BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027877
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I2V|A Chain A, Crystal Structure Of Human Mocs3 Rhodanese-Like Domain
Length = 127
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 67 MLLDIRPIWETEKARVKGSLHVPL-FVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNP 125
+LLD+RP E + R+ +LH+PL +E RD ++ LLK+ +W ++ T
Sbjct: 19 LLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKE-------AIWEEKQGT---- 67
Query: 126 NFVRQVEAAVPDKESKLLVACGEG---------LRSMMAASKLYEGGYRNLGWLAGGFNR 176
Q AAVP + V C G L+S+ AA +L R++ +
Sbjct: 68 ----QEGAAVP-----IYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLXAWAA 118
Query: 177 AIEGDFPE 184
I+G FP+
Sbjct: 119 KIDGTFPQ 126
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Query: 65 GFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFN 124
G LD+R E + G+++VP +++ G G+ N
Sbjct: 32 GHRYLDVRTPEEFSQGHACGAINVP----------------YMNRGASGMSK-------N 68
Query: 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175
+F+ QV + ++ ++V C G RS+ A + L G+ + + GG++
Sbjct: 69 TDFLEQVSSHFGQSDN-IIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 55 PKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVP 89
P E A +EG ++LD+RP K + GSL++P
Sbjct: 276 PPERVRAWREGGVVLDVRPADAFAKRHLAGSLNIP 310
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 90 LFVEDRDYSA-ITLLKKWVHFGYIGLWTGQKFT--MFNPNFVRQVEAAVPDKESKLLVAC 146
LFV + A L ++ G+ GL Q F+ + +RQ PD + V
Sbjct: 57 LFVSNNSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLG 116
Query: 147 GEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178
GEGLR+ + A+ L G + G A RA+
Sbjct: 117 GEGLRAELRAAGLRLAGDPSAGDGAAPRVRAV 148
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 90 LFVEDRDYSA-ITLLKKWVHFGYIGLWTGQKFT--MFNPNFVRQVEAAVPDKESKLLVAC 146
LFV + A L ++ G+ GL Q F+ + +RQ PD + V
Sbjct: 57 LFVSNNSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLG 116
Query: 147 GEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178
GEGLR+ + A+ L G + G A RA+
Sbjct: 117 GEGLRAELRAAGLRLAGDPSAGDGAAPRVRAV 148
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 74 IWETEKA---------RVKGSLHVPLFVEDRDYSA-ITLLKKWVHFGYIGLWTGQKFT-- 121
+W E+A R+ + LFV + A L ++ G+ GL Q F+
Sbjct: 32 LWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSA 91
Query: 122 MFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178
+ +RQ PD + V GEGLR+ + A+ L G + G A RA+
Sbjct: 92 LCAARLLRQRLPGPPDAPGAVFVLGGEGLRAELRAAGLRLAGDPSAGDGAAPRVRAV 148
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 130 QVEAAVPDKESKLLV-ACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175
++ A VP +++ + V GEGL + +AA +L++ GY ++ L GG +
Sbjct: 54 EIHARVPRRDTPITVYDDGEGL-APVAAQRLHDLGYSDVALLDGGLS 99
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 41/151 (27%)
Query: 24 FTTGKTKSLQINAKASNARQLIQSGAIQPFTPKEAAAAMKEGFMLLDIRPIWETEKARVK 83
+++ K + ASN I G + E ++ G L+D+R E ++ +K
Sbjct: 466 YSSAKDPVNXVGYAASN----IVDGFVDTVQWHEIDRIVENGGYLIDVREPNELKQGXIK 521
Query: 84 GSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKLL 143
GS+++PL E RD ++E DK+ +
Sbjct: 522 GSINIPLD-ELRD---------------------------------RLEEVPVDKD--IY 545
Query: 144 VACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174
+ C G R +AA L E GY+ + + GGF
Sbjct: 546 ITCQLGXRGYVAARXLXEKGYK-VKNVDGGF 575
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 126 NFVRQVE--AAVPDKESKLLV--ACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178
N RQ+ A +P ++ + + CG GLRS+ AS+L G ++ + G N ++
Sbjct: 69 NIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSM 125
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIE 186
D E ++V C R+ +A L E G++ + GG ++ +E P ++
Sbjct: 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 130 QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174
++ AVPDK + V C G +S A L E GY ++ AGG
Sbjct: 32 RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV-ENAGGL 75
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175
++ K + C GLRS +AA + G + + + GGF
Sbjct: 85 EDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFG 122
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine
Fyn-Related Kinase
Length = 121
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 2 AIQPNHFYASALKHADQNKQLIFTTGKTKSLQINAKASN----ARQLIQSGAIQPFTPKE 57
++Q ++ A+K AD KQL+++ +T + I S + ++ G ++ + +
Sbjct: 12 SLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRR 71
Query: 58 AAAAMKEGFMLLDIRPIWET 77
+ EG L R ++ T
Sbjct: 72 ----LDEGGFFLTRRKVFST 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,255,217
Number of Sequences: 62578
Number of extensions: 247515
Number of successful extensions: 526
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 17
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)