Query 027877
Match_columns 217
No_of_seqs 148 out of 1819
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 1.1E-22 2.5E-27 158.5 12.1 119 49-191 13-133 (136)
2 cd01533 4RHOD_Repeat_2 Member 99.9 1.5E-22 3.2E-27 151.4 11.0 100 48-181 7-109 (109)
3 KOG1530 Rhodanese-related sulf 99.9 1.3E-22 2.9E-27 153.9 10.5 115 48-185 20-135 (136)
4 cd01518 RHOD_YceA Member of th 99.9 2.3E-22 4.9E-27 148.3 9.0 97 52-178 3-100 (101)
5 PRK00162 glpE thiosulfate sulf 99.9 2.9E-21 6.3E-26 144.1 11.9 103 49-187 3-106 (108)
6 cd01527 RHOD_YgaP Member of th 99.9 1.4E-21 3E-26 143.3 9.6 98 51-184 2-99 (99)
7 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 3.7E-21 8.1E-26 154.2 11.3 114 48-184 33-162 (162)
8 cd01534 4RHOD_Repeat_3 Member 99.8 5.5E-21 1.2E-25 139.5 9.8 91 53-178 1-94 (95)
9 cd01523 RHOD_Lact_B Member of 99.8 1.4E-20 3E-25 138.3 10.0 97 53-178 1-99 (100)
10 cd01519 RHOD_HSP67B2 Member of 99.8 8.9E-21 1.9E-25 140.4 8.7 102 54-178 2-105 (106)
11 cd01520 RHOD_YbbB Member of th 99.8 3.8E-20 8.3E-25 142.5 12.2 124 53-179 1-126 (128)
12 cd01521 RHOD_PspE2 Member of t 99.8 2.7E-20 5.9E-25 139.5 10.7 99 50-184 7-110 (110)
13 cd01448 TST_Repeat_1 Thiosulfa 99.8 5.4E-20 1.2E-24 139.8 10.4 112 53-181 2-122 (122)
14 cd01526 RHOD_ThiF Member of th 99.8 3.9E-20 8.5E-25 141.1 9.6 110 48-184 5-118 (122)
15 cd01522 RHOD_1 Member of the R 99.8 4.1E-20 9E-25 140.2 9.5 102 53-180 1-105 (117)
16 smart00450 RHOD Rhodanese Homo 99.8 6E-20 1.3E-24 132.4 9.7 98 64-183 3-100 (100)
17 cd01528 RHOD_2 Member of the R 99.8 8.8E-20 1.9E-24 134.4 10.3 94 53-179 2-98 (101)
18 cd01524 RHOD_Pyr_redox Member 99.8 1.1E-19 2.4E-24 131.3 10.1 89 53-178 1-89 (90)
19 cd01447 Polysulfide_ST Polysul 99.8 7.6E-20 1.6E-24 134.4 9.0 101 53-181 1-103 (103)
20 cd01449 TST_Repeat_2 Thiosulfa 99.8 6.3E-20 1.4E-24 138.4 8.6 104 53-178 1-117 (118)
21 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.9E-19 4E-24 130.8 10.4 91 52-178 1-95 (96)
22 cd01530 Cdc25 Cdc25 phosphatas 99.8 1.5E-19 3.3E-24 138.1 10.1 95 51-178 2-120 (121)
23 cd01525 RHOD_Kc Member of the 99.8 7.5E-20 1.6E-24 135.3 8.1 101 53-178 1-104 (105)
24 PF00581 Rhodanese: Rhodanese- 99.8 1.6E-19 3.4E-24 133.9 8.5 106 54-179 1-112 (113)
25 PRK08762 molybdopterin biosynt 99.8 3.3E-19 7.2E-24 160.3 11.6 104 50-187 2-105 (376)
26 cd01535 4RHOD_Repeat_4 Member 99.8 3.4E-19 7.5E-24 140.3 10.0 93 59-187 3-97 (145)
27 cd01529 4RHOD_Repeats Member o 99.8 2.6E-19 5.5E-24 130.8 8.6 87 63-179 10-96 (96)
28 PRK11493 sseA 3-mercaptopyruva 99.8 3.5E-19 7.7E-24 154.2 11.0 121 51-189 5-138 (281)
29 cd01532 4RHOD_Repeat_1 Member 99.8 5.4E-19 1.2E-23 128.4 8.8 83 63-179 8-92 (92)
30 PLN02723 3-mercaptopyruvate su 99.8 6E-19 1.3E-23 155.5 10.8 122 51-189 22-154 (320)
31 PRK09629 bifunctional thiosulf 99.8 1.1E-18 2.3E-23 165.3 11.6 122 51-189 9-132 (610)
32 PRK11784 tRNA 2-selenouridine 99.8 7.5E-19 1.6E-23 156.1 9.6 153 54-211 4-162 (345)
33 cd01445 TST_Repeats Thiosulfat 99.8 1.3E-18 2.8E-23 136.0 9.3 108 53-178 1-137 (138)
34 TIGR03167 tRNA_sel_U_synt tRNA 99.8 7.1E-19 1.5E-23 154.3 7.8 128 65-198 2-134 (311)
35 cd00158 RHOD Rhodanese Homolog 99.8 2.1E-18 4.6E-23 122.6 8.1 86 59-178 3-89 (89)
36 cd01531 Acr2p Eukaryotic arsen 99.8 3.2E-18 6.9E-23 128.7 9.0 99 50-180 1-112 (113)
37 TIGR02981 phageshock_pspE phag 99.8 4.2E-18 9.2E-23 126.3 9.2 82 63-179 16-97 (101)
38 PRK01415 hypothetical protein; 99.8 2.8E-18 6.1E-23 145.6 9.1 103 49-181 110-213 (247)
39 PRK05320 rhodanese superfamily 99.7 4.1E-18 8.8E-23 145.9 9.0 120 30-180 90-216 (257)
40 PLN02723 3-mercaptopyruvate su 99.7 4.3E-18 9.3E-23 150.1 9.4 115 52-187 191-318 (320)
41 PRK10287 thiosulfate:cyanide s 99.7 8E-18 1.7E-22 125.4 8.8 82 63-179 18-99 (104)
42 COG0607 PspE Rhodanese-related 99.7 1.2E-17 2.6E-22 123.7 9.7 91 63-187 18-109 (110)
43 PRK11493 sseA 3-mercaptopyruva 99.7 6E-18 1.3E-22 146.5 9.1 113 53-187 155-280 (281)
44 PRK00142 putative rhodanese-re 99.7 1.5E-17 3.2E-22 146.3 10.4 102 48-180 109-212 (314)
45 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1.4E-17 3E-22 125.3 8.3 97 51-178 2-112 (113)
46 COG2897 SseA Rhodanese-related 99.7 3.7E-17 8.1E-22 141.3 10.7 124 49-189 9-141 (285)
47 PRK09629 bifunctional thiosulf 99.7 6E-17 1.3E-21 153.5 10.5 115 52-187 148-272 (610)
48 COG2897 SseA Rhodanese-related 99.7 1E-16 2.3E-21 138.5 10.5 116 51-188 156-284 (285)
49 PRK07878 molybdopterin biosynt 99.7 1.4E-16 3.1E-21 144.0 10.3 102 48-183 284-387 (392)
50 PRK05597 molybdopterin biosynt 99.6 3.9E-16 8.6E-21 139.5 9.2 97 48-179 258-354 (355)
51 PRK07411 hypothetical protein; 99.6 6.5E-16 1.4E-20 139.7 9.8 105 48-184 279-386 (390)
52 cd01446 DSP_MapKP N-terminal r 99.6 2.4E-15 5.2E-20 116.0 8.8 111 53-179 2-126 (132)
53 PRK05600 thiamine biosynthesis 99.5 1.4E-14 2.9E-19 130.2 7.0 93 52-175 272-369 (370)
54 KOG1529 Mercaptopyruvate sulfu 99.4 2.7E-12 5.8E-17 109.7 10.1 122 52-190 6-140 (286)
55 COG1054 Predicted sulfurtransf 99.4 7.7E-13 1.7E-17 113.6 6.2 100 49-178 111-211 (308)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.3 8.9E-12 1.9E-16 115.6 8.7 78 58-171 400-481 (482)
57 KOG3772 M-phase inducer phosph 99.2 5.1E-11 1.1E-15 103.8 7.2 103 47-180 152-276 (325)
58 KOG2017 Molybdopterin synthase 99.1 5.5E-11 1.2E-15 104.1 5.6 103 48-180 314-419 (427)
59 KOG1529 Mercaptopyruvate sulfu 98.8 9.7E-09 2.1E-13 88.1 7.4 96 63-180 170-276 (286)
60 COG5105 MIH1 Mitotic inducer, 98.4 4.3E-07 9.4E-12 79.0 6.1 100 48-180 239-358 (427)
61 COG2603 Predicted ATPase [Gene 98.1 1.9E-06 4.1E-11 74.3 3.9 119 58-179 8-128 (334)
62 PF04273 DUF442: Putative phos 97.0 0.0033 7.2E-08 47.2 6.9 78 51-158 13-105 (110)
63 TIGR01244 conserved hypothetic 96.9 0.0064 1.4E-07 47.1 8.4 103 51-185 13-129 (135)
64 KOG1093 Predicted protein kina 96.0 0.0038 8.2E-08 58.7 2.3 106 42-177 613-718 (725)
65 PF13350 Y_phosphatase3: Tyros 94.6 0.14 3E-06 40.6 6.7 117 47-166 24-153 (164)
66 KOG1717 Dual specificity phosp 93.9 0.1 2.2E-06 45.1 4.7 106 52-180 5-124 (343)
67 PRK00142 putative rhodanese-re 93.7 0.011 2.5E-07 52.2 -1.3 40 53-92 16-55 (314)
68 KOG3636 Uncharacterized conser 90.2 0.59 1.3E-05 43.2 5.3 40 52-91 308-352 (669)
69 COG3453 Uncharacterized protei 89.0 2.3 5E-05 32.5 6.8 80 49-158 12-106 (130)
70 cd00127 DSPc Dual specificity 89.0 1.1 2.3E-05 33.8 5.3 28 137-164 79-109 (139)
71 PF01451 LMWPc: Low molecular 85.7 0.61 1.3E-05 35.6 2.3 36 142-177 1-41 (138)
72 PLN02727 NAD kinase 81.9 6.7 0.00014 39.6 8.1 83 50-160 266-364 (986)
73 smart00195 DSPc Dual specifici 81.5 6.2 0.00013 29.7 6.4 29 137-165 76-107 (138)
74 smart00226 LMWPc Low molecular 79.2 2 4.4E-05 32.8 3.0 36 142-177 1-37 (140)
75 TIGR03167 tRNA_sel_U_synt tRNA 78.8 3.3 7.1E-05 36.6 4.5 34 50-83 135-172 (311)
76 COG0062 Uncharacterized conser 78.2 4.9 0.00011 33.4 5.1 40 129-169 38-81 (203)
77 TIGR02689 ars_reduc_gluta arse 76.1 4 8.6E-05 30.8 3.8 46 140-185 1-57 (126)
78 PRK10126 tyrosine phosphatase; 74.6 3.7 8.1E-05 31.9 3.3 37 140-177 3-40 (147)
79 PRK11391 etp phosphotyrosine-p 72.9 4.8 0.0001 31.3 3.5 37 140-177 3-40 (144)
80 PF05706 CDKN3: Cyclin-depende 72.9 4.4 9.5E-05 32.7 3.3 35 128-163 123-159 (168)
81 COG2453 CDC14 Predicted protei 72.4 7.6 0.00017 31.2 4.8 29 137-165 103-134 (180)
82 TIGR00197 yjeF_nterm yjeF N-te 69.8 9.7 0.00021 31.4 4.9 33 137-170 43-78 (205)
83 PLN03049 pyridoxine (pyridoxam 67.9 9.3 0.0002 35.7 4.9 45 139-184 59-116 (462)
84 PLN02918 pyridoxine (pyridoxam 67.9 9.6 0.00021 36.4 5.0 45 139-184 135-192 (544)
85 PF03853 YjeF_N: YjeF-related 67.3 9.1 0.0002 30.5 4.1 50 137-187 23-87 (169)
86 PRK13530 arsenate reductase; P 66.9 8.7 0.00019 29.4 3.8 36 139-174 3-39 (133)
87 PRK10565 putative carbohydrate 66.8 10 0.00022 35.8 5.0 33 137-170 58-93 (508)
88 PF09992 DUF2233: Predicted pe 66.0 7.8 0.00017 30.5 3.5 41 137-177 98-143 (170)
89 COG4822 CbiK Cobalamin biosynt 65.9 17 0.00037 30.7 5.5 45 125-169 121-172 (265)
90 cd00115 LMWPc Substituted upda 64.9 7.7 0.00017 29.6 3.2 37 141-177 2-40 (141)
91 PLN03050 pyridoxine (pyridoxam 63.3 11 0.00025 32.1 4.2 31 139-170 60-93 (246)
92 COG0394 Wzb Protein-tyrosine-p 61.9 10 0.00022 29.4 3.4 36 140-175 3-39 (139)
93 TIGR02691 arsC_pI258_fam arsen 57.7 12 0.00026 28.5 3.0 33 142-174 1-34 (129)
94 cd02071 MM_CoA_mut_B12_BD meth 55.8 32 0.00069 25.7 5.1 46 137-182 48-103 (122)
95 COG2519 GCD14 tRNA(1-methylade 55.1 68 0.0015 27.7 7.4 54 124-178 174-227 (256)
96 PTZ00393 protein tyrosine phos 53.2 29 0.00064 29.6 4.9 29 137-165 168-198 (241)
97 PF00782 DSPc: Dual specificit 53.1 25 0.00054 26.1 4.1 28 137-164 71-101 (133)
98 COG2518 Pcm Protein-L-isoaspar 52.7 33 0.00071 28.7 5.1 58 123-180 56-136 (209)
99 PF15654 Tox-WTIP: Toxin with 52.6 3.5 7.5E-05 26.7 -0.6 37 177-213 3-39 (54)
100 TIGR00640 acid_CoA_mut_C methy 52.2 36 0.00078 26.1 4.9 54 125-182 43-106 (132)
101 KOG0333 U5 snRNP-like RNA heli 48.6 27 0.00059 33.4 4.3 36 138-174 516-551 (673)
102 TIGR00853 pts-lac PTS system, 47.5 27 0.00059 25.1 3.4 38 139-177 3-44 (95)
103 COG2185 Sbm Methylmalonyl-CoA 46.1 64 0.0014 25.3 5.5 38 137-174 61-102 (143)
104 smart00012 PTPc_DSPc Protein t 44.8 32 0.00069 23.8 3.4 16 139-154 39-55 (105)
105 smart00404 PTPc_motif Protein 44.8 32 0.00069 23.8 3.4 16 139-154 39-55 (105)
106 PF02302 PTS_IIB: PTS system, 44.2 32 0.00069 23.7 3.3 25 141-165 1-30 (90)
107 PRK10310 PTS system galactitol 44.0 66 0.0014 23.0 5.0 37 141-178 4-45 (94)
108 PF04722 Ssu72: Ssu72-like pro 44.0 35 0.00077 28.1 3.9 29 141-170 3-32 (195)
109 PRK08117 4-aminobutyrate amino 43.7 30 0.00065 31.6 3.9 55 125-180 89-145 (433)
110 cd05565 PTS_IIB_lactose PTS_II 43.6 30 0.00065 25.3 3.1 37 141-178 2-42 (99)
111 cd00079 HELICc Helicase superf 43.4 61 0.0013 23.2 4.9 37 137-174 26-62 (131)
112 cd05567 PTS_IIB_mannitol PTS_I 42.5 35 0.00076 23.8 3.3 37 140-177 1-42 (87)
113 PTZ00242 protein tyrosine phos 42.1 60 0.0013 25.7 5.0 27 137-163 96-124 (166)
114 PRK09590 celB cellobiose phosp 41.5 34 0.00073 25.2 3.2 37 140-177 2-42 (104)
115 TIGR03372 putres_am_tran putre 41.2 44 0.00095 30.9 4.6 52 126-178 121-177 (442)
116 PF13344 Hydrolase_6: Haloacid 40.6 51 0.0011 23.8 4.0 36 126-165 21-57 (101)
117 PRK07688 thiamine/molybdopteri 40.5 21 0.00046 31.8 2.3 40 48-88 274-320 (339)
118 PF02590 SPOUT_MTase: Predicte 40.4 54 0.0012 25.9 4.4 47 130-177 59-110 (155)
119 PRK07481 hypothetical protein; 39.7 47 0.001 30.7 4.5 56 125-180 89-152 (449)
120 PRK06918 4-aminobutyrate amino 39.0 58 0.0013 30.0 5.0 57 125-181 100-158 (451)
121 TIGR01587 cas3_core CRISPR-ass 39.0 53 0.0011 28.8 4.6 46 128-174 212-258 (358)
122 PRK10499 PTS system N,N'-diace 38.9 44 0.00096 24.5 3.5 26 140-165 4-33 (106)
123 cd05564 PTS_IIB_chitobiose_lic 37.8 39 0.00085 24.2 3.0 36 141-177 1-40 (96)
124 PRK11070 ssDNA exonuclease Rec 37.6 65 0.0014 31.0 5.2 78 123-208 115-201 (575)
125 PRK05298 excinuclease ABC subu 36.3 54 0.0012 32.0 4.5 48 126-175 434-481 (652)
126 PRK06917 hypothetical protein; 35.7 66 0.0014 29.7 4.9 53 125-178 77-137 (447)
127 PRK08674 bifunctional phosphog 35.6 2.2E+02 0.0049 25.0 8.1 77 137-215 77-157 (337)
128 PTZ00110 helicase; Provisional 34.4 79 0.0017 30.0 5.2 37 137-174 375-411 (545)
129 PF03610 EIIA-man: PTS system 34.4 93 0.002 22.7 4.7 34 137-172 55-90 (116)
130 PF03162 Y_phosphatase2: Tyros 34.0 42 0.0009 26.7 2.8 40 125-164 76-118 (164)
131 TIGR00700 GABAtrnsam 4-aminobu 33.9 73 0.0016 28.9 4.8 54 125-178 79-134 (420)
132 PRK08593 4-aminobutyrate amino 33.7 68 0.0015 29.6 4.6 54 125-178 88-143 (445)
133 TIGR00631 uvrb excinuclease AB 33.3 72 0.0016 31.2 4.8 48 126-175 430-477 (655)
134 PRK06148 hypothetical protein; 33.0 64 0.0014 33.2 4.6 54 125-179 666-721 (1013)
135 cd00133 PTS_IIB PTS_IIB: subun 32.9 45 0.00098 22.0 2.5 21 141-161 1-22 (84)
136 COG0514 RecQ Superfamily II DN 32.8 52 0.0011 31.8 3.7 47 137-184 228-283 (590)
137 COG2117 Predicted subunit of t 32.6 56 0.0012 26.5 3.3 18 147-164 8-25 (198)
138 TIGR00824 EIIA-man PTS system, 32.4 75 0.0016 23.5 3.9 45 126-172 43-91 (116)
139 PRK04837 ATP-dependent RNA hel 31.9 92 0.002 28.2 5.1 36 138-174 254-289 (423)
140 PRK06916 adenosylmethionine--8 31.4 80 0.0017 29.3 4.7 54 125-179 102-163 (460)
141 PRK11192 ATP-dependent RNA hel 31.4 97 0.0021 28.1 5.2 36 138-174 244-279 (434)
142 PF13580 SIS_2: SIS domain; PD 30.5 1.2E+02 0.0025 23.0 4.8 41 124-165 88-132 (138)
143 KOG0330 ATP-dependent RNA heli 30.4 72 0.0016 29.5 3.9 36 138-174 299-334 (476)
144 KOG0352 ATP-dependent DNA heli 30.3 44 0.00095 31.3 2.6 47 140-187 256-311 (641)
145 cd00047 PTPc Protein tyrosine 30.2 55 0.0012 26.8 3.1 17 138-154 165-182 (231)
146 COG0513 SrmB Superfamily II DN 30.0 91 0.002 29.4 4.8 34 140-174 274-307 (513)
147 PRK05769 4-aminobutyrate amino 29.9 95 0.002 28.6 4.8 54 125-178 100-155 (441)
148 TIGR00201 comF comF family pro 29.9 75 0.0016 25.5 3.8 33 138-170 151-186 (190)
149 PRK00615 glutamate-1-semialdeh 29.8 79 0.0017 29.1 4.3 53 125-178 96-150 (433)
150 PF14606 Lipase_GDSL_3: GDSL-l 29.7 1.2E+02 0.0025 24.7 4.7 45 126-172 82-144 (178)
151 PRK05964 adenosylmethionine--8 29.6 1.1E+02 0.0023 27.9 5.1 53 126-179 89-149 (423)
152 PRK06058 4-aminobutyrate amino 29.0 1E+02 0.0022 28.3 5.0 54 125-178 102-157 (443)
153 cd05566 PTS_IIB_galactitol PTS 28.8 79 0.0017 21.8 3.3 24 141-164 2-30 (89)
154 PRK00103 rRNA large subunit me 28.6 1.5E+02 0.0032 23.5 5.1 47 130-177 59-110 (157)
155 cd05563 PTS_IIB_ascorbate PTS_ 28.6 70 0.0015 21.9 3.0 24 141-164 1-29 (86)
156 PRK06062 hypothetical protein; 28.0 89 0.0019 28.9 4.3 53 125-178 98-152 (451)
157 PRK09792 4-aminobutyrate trans 28.0 1E+02 0.0022 28.1 4.6 53 126-178 87-141 (421)
158 PRK07482 hypothetical protein; 27.9 1E+02 0.0022 28.6 4.7 53 125-178 97-157 (461)
159 PRK07495 4-aminobutyrate amino 27.6 1E+02 0.0022 28.3 4.6 54 125-178 86-141 (425)
160 TIGR00537 hemK_rel_arch HemK-r 27.3 1.4E+02 0.003 23.4 4.9 48 125-173 120-167 (179)
161 PRK11776 ATP-dependent RNA hel 27.3 1.1E+02 0.0023 28.1 4.8 37 138-175 241-277 (460)
162 KOG1716 Dual specificity phosp 27.3 1.2E+02 0.0026 26.2 4.8 29 137-165 153-184 (285)
163 PRK08297 L-lysine aminotransfe 27.2 1.1E+02 0.0024 28.2 4.8 55 126-180 96-164 (443)
164 PRK06777 4-aminobutyrate amino 27.2 1.1E+02 0.0023 28.0 4.7 53 126-178 87-141 (421)
165 PRK10590 ATP-dependent RNA hel 26.7 1.1E+02 0.0023 28.2 4.6 36 138-174 244-279 (456)
166 COG1440 CelA Phosphotransferas 26.5 80 0.0017 23.3 3.0 22 140-161 2-23 (102)
167 PF02879 PGM_PMM_II: Phosphogl 26.5 1.4E+02 0.0031 21.1 4.4 33 138-171 20-52 (104)
168 PLN02482 glutamate-1-semialdeh 26.4 1E+02 0.0022 28.9 4.4 52 125-178 142-195 (474)
169 PRK06082 4-aminobutyrate amino 26.3 1E+02 0.0022 28.6 4.4 53 125-178 116-170 (459)
170 COG3414 SgaB Phosphotransferas 26.2 1E+02 0.0022 22.3 3.5 26 140-165 2-32 (93)
171 PRK08349 hypothetical protein; 25.9 91 0.002 25.2 3.6 27 141-168 2-28 (198)
172 TIGR00709 dat 2,4-diaminobutyr 25.9 1.1E+02 0.0023 28.2 4.4 54 125-178 85-142 (442)
173 PRK13360 omega amino acid--pyr 25.8 1.1E+02 0.0024 28.2 4.5 52 126-178 93-152 (442)
174 PRK06541 hypothetical protein; 25.6 1.1E+02 0.0024 28.4 4.5 54 125-179 98-159 (460)
175 PRK07986 adenosylmethionine--8 25.6 1.2E+02 0.0026 27.9 4.7 53 125-178 89-148 (428)
176 PRK05965 hypothetical protein; 25.4 1.3E+02 0.0028 27.9 4.9 52 126-178 94-153 (459)
177 PRK11784 tRNA 2-selenouridine 25.4 1.9E+02 0.004 26.0 5.8 25 55-79 154-179 (345)
178 cd05568 PTS_IIB_bgl_like PTS_I 25.3 90 0.002 21.0 3.0 21 141-161 2-23 (85)
179 PRK11522 putrescine--2-oxoglut 25.2 1E+02 0.0023 28.6 4.3 52 126-178 128-184 (459)
180 TIGR00614 recQ_fam ATP-depende 25.1 76 0.0016 29.4 3.3 36 138-174 225-260 (470)
181 PRK06105 aminotransferase; Pro 25.1 1.4E+02 0.0031 27.6 5.1 59 125-184 95-161 (460)
182 COG4992 ArgD Ornithine/acetylo 24.9 1.8E+02 0.0039 26.8 5.6 61 125-187 87-165 (404)
183 PRK07678 aminotransferase; Val 24.7 1.2E+02 0.0026 28.0 4.5 53 125-179 92-152 (451)
184 PF02780 Transketolase_C: Tran 24.5 1.1E+02 0.0023 22.6 3.5 29 137-165 7-37 (124)
185 PRK04537 ATP-dependent RNA hel 24.5 83 0.0018 30.1 3.5 36 138-174 256-291 (572)
186 PRK08384 thiamine biosynthesis 24.5 92 0.002 28.4 3.6 27 139-165 180-206 (381)
187 PRK05639 4-aminobutyrate amino 24.4 1.2E+02 0.0026 28.1 4.5 54 125-179 99-154 (457)
188 PF01488 Shikimate_DH: Shikima 24.4 1.3E+02 0.0029 22.6 4.1 37 138-175 11-47 (135)
189 smart00194 PTPc Protein tyrosi 24.2 86 0.0019 26.2 3.3 16 139-154 193-209 (258)
190 PRK14665 mnmA tRNA-specific 2- 24.1 1.2E+02 0.0025 27.4 4.2 29 137-165 3-31 (360)
191 KOG2882 p-Nitrophenyl phosphat 23.7 3.1E+02 0.0067 24.3 6.6 30 56-85 13-43 (306)
192 PF00156 Pribosyltran: Phospho 23.6 1.6E+02 0.0034 21.2 4.2 33 137-169 86-121 (125)
193 PF04122 CW_binding_2: Putativ 23.6 1.1E+02 0.0023 21.3 3.2 35 138-175 49-83 (92)
194 PRK08360 4-aminobutyrate amino 23.5 1.2E+02 0.0026 28.0 4.3 53 125-178 87-141 (443)
195 PRK07030 adenosylmethionine--8 23.4 1.4E+02 0.003 27.8 4.7 53 125-178 93-153 (466)
196 PF07755 DUF1611: Protein of u 23.3 1.5E+02 0.0032 26.2 4.6 46 139-185 111-164 (301)
197 PRK11057 ATP-dependent DNA hel 23.1 88 0.0019 30.1 3.4 37 137-174 234-270 (607)
198 cd01423 MGS_CPS_I_III Methylgl 23.1 2.1E+02 0.0046 20.8 4.9 33 151-184 14-46 (116)
199 PRK09426 methylmalonyl-CoA mut 23.1 1.1E+02 0.0023 30.5 4.0 74 96-174 595-672 (714)
200 COG0160 GabT 4-aminobutyrate a 23.1 1.4E+02 0.0031 27.9 4.6 62 123-184 100-163 (447)
201 PF03054 tRNA_Me_trans: tRNA m 22.9 94 0.002 28.1 3.4 25 141-165 2-26 (356)
202 PRK03092 ribose-phosphate pyro 22.8 1.6E+02 0.0036 25.8 4.8 46 138-183 200-255 (304)
203 TIGR00342 thiazole biosynthesi 22.8 1.1E+02 0.0025 27.4 3.9 29 138-167 171-199 (371)
204 COG1077 MreB Actin-like ATPase 22.3 4E+02 0.0088 24.0 7.1 58 141-198 103-163 (342)
205 PLN02760 4-aminobutyrate:pyruv 22.2 1.5E+02 0.0032 28.0 4.7 57 125-181 136-200 (504)
206 PRK07036 hypothetical protein; 22.1 1.6E+02 0.0034 27.4 4.8 53 125-178 98-158 (466)
207 PRK13809 orotate phosphoribosy 21.9 2.2E+02 0.0047 23.5 5.1 50 137-186 116-174 (206)
208 PRK04192 V-type ATP synthase s 21.7 1.4E+02 0.0031 28.8 4.5 58 153-212 313-370 (586)
209 TIGR02801 tolR TolR protein. T 21.7 2.7E+02 0.0058 20.7 5.3 34 137-170 91-127 (129)
210 PF00102 Y_phosphatase: Protei 21.5 1.1E+02 0.0025 24.5 3.4 18 137-154 168-186 (235)
211 KOG2424 Protein involved in tr 21.3 1.2E+02 0.0025 24.9 3.2 30 140-170 6-36 (195)
212 KOG0331 ATP-dependent RNA heli 21.3 1.8E+02 0.0039 27.8 4.9 37 137-174 339-375 (519)
213 PRK01297 ATP-dependent RNA hel 21.1 1.8E+02 0.0038 26.9 4.9 37 138-175 334-370 (475)
214 PRK07483 hypothetical protein; 21.0 1.7E+02 0.0037 26.9 4.8 52 126-178 77-136 (443)
215 PRK00121 trmB tRNA (guanine-N( 21.0 2.2E+02 0.0048 23.0 5.0 48 124-173 135-182 (202)
216 PRK07199 phosphoribosylpyropho 20.7 1.3E+02 0.0028 26.3 3.8 33 138-170 210-245 (301)
217 PF02863 Arg_repressor_C: Argi 20.7 1.5E+02 0.0033 19.8 3.4 25 137-161 45-69 (70)
218 TIGR01389 recQ ATP-dependent D 20.2 1E+02 0.0023 29.4 3.3 35 139-174 224-258 (591)
219 PRK06149 hypothetical protein; 20.0 1.6E+02 0.0035 30.1 4.7 53 125-178 627-681 (972)
220 COG1891 Uncharacterized protei 20.0 2.1E+02 0.0046 23.5 4.5 36 51-91 6-41 (235)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.89 E-value=1.1e-22 Score=158.51 Aligned_cols=119 Identities=22% Similarity=0.432 Sum_probs=96.9
Q ss_pred CCcccCHHHHHHHhhCCcEEEecCChhhhhhccCCCc--EeccCcccccchhHHHHHHhhhhccccccccCCcccCCChh
Q 027877 49 AIQPFTPKEAAAAMKEGFMLLDIRPIWETEKARVKGS--LHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPN 126 (217)
Q Consensus 49 ~~~~is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (217)
.+..++++++.+.++++.+|||||++.||..|||||| +|+|+..+... ....+++
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-----------------------~~l~~~~ 69 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-----------------------GRVKNQE 69 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcc-----------------------cccCCHH
Confidence 4678999999998855678999999999999999999 89998532110 0112245
Q ss_pred HHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCccc
Q 027877 127 FVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKEKL 191 (217)
Q Consensus 127 ~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~~~ 191 (217)
+...+...+ +++++||+||++|.||..++..|.+.||++|+.|.||+.+|.++|+|+.+..++.
T Consensus 70 ~~~~~~~~~-~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~ 133 (136)
T PLN02160 70 FLEQVSSLL-NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEEP 133 (136)
T ss_pred HHHHHHhcc-CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccCC
Confidence 555554433 6788999999999999999999999999999999999999999999999886654
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.89 E-value=1.5e-22 Score=151.41 Aligned_cols=100 Identities=25% Similarity=0.307 Sum_probs=83.8
Q ss_pred CCCcccCHHHHHHHh-hC-CcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCCh
Q 027877 48 GAIQPFTPKEAAAAM-KE-GFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNP 125 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-~~-~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (217)
.....++++++.+.+ +. +.+|||||++.||..||||||+|+|+..+
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l-------------------------------- 54 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAEL-------------------------------- 54 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHH--------------------------------
Confidence 456789999999988 33 57899999999999999999999999632
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcc-eeeccccHHHHHhCC
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRN-LGWLAGGFNRAIEGD 181 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~n-v~~l~GG~~~W~~~g 181 (217)
...+.....+++++||+||++|.||..++..|+..||+| +++|+||+.+|..+|
T Consensus 55 --~~~~~~l~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 55 --VLRVGELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred --HHHHHhcCCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 222223333567899999999999999999999999998 999999999999875
No 3
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-22 Score=153.90 Aligned_cols=115 Identities=23% Similarity=0.454 Sum_probs=101.1
Q ss_pred CCCcccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChh
Q 027877 48 GAIQPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPN 126 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (217)
.....++.+++++++ ..+.++||||.++||..||||.++|||+.... +.+...+++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~-----------------------~~~~l~~~e 76 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRP-----------------------GAGALKNPE 76 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccc-----------------------cccccCCHH
Confidence 567789999999999 55599999999999999999999999995321 223345789
Q ss_pred HHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcc
Q 027877 127 FVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEI 185 (217)
Q Consensus 127 ~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~ 185 (217)
|.+++....+..+++|||+|++|.||..|...|..+||+||.++.|||.+|.+.++|..
T Consensus 77 F~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 77 FLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred HHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 99999888878888999999999999999999999999999999999999999888764
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.88 E-value=2.3e-22 Score=148.31 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=80.1
Q ss_pred ccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHH
Q 027877 52 PFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQ 130 (217)
Q Consensus 52 ~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (217)
.|+++++.+++ +++++|||||++.||..||||||+|+|+..+... .+...+
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~----------------------------~~~~~~ 54 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF----------------------------PFWLDE 54 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHh----------------------------HHHHHh
Confidence 58899999988 6678999999999999999999999999754210 011111
Q ss_pred HHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 131 VEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 131 ~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
+.. . +++++||+||++|.||..++..|+.+||+||++|+||+.+|.
T Consensus 55 ~~~-~-~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 55 NLD-L-LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hhh-h-cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 111 2 678899999999999999999999999999999999999996
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.86 E-value=2.9e-21 Score=144.14 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCcccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhH
Q 027877 49 AIQPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNF 127 (217)
Q Consensus 49 ~~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
..+.++++++.+.+ +.+.++||+|++.||..||||||+|+|+.. +
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~----------------------------------l 48 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDS----------------------------------L 48 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHH----------------------------------H
Confidence 46789999999988 567899999999999999999999999852 2
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccC
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEG 187 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~ 187 (217)
.+.+ ..+ +.+++|++||.+|.++..++..|+..||+||++++||+.+|+..++|++..
T Consensus 49 ~~~~-~~~-~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 49 GAFM-RQA-DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred HHHH-Hhc-CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 2222 224 678899999999999999999999999999999999999999999998764
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.86 E-value=1.4e-21 Score=143.35 Aligned_cols=98 Identities=22% Similarity=0.350 Sum_probs=84.5
Q ss_pred cccCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHH
Q 027877 51 QPFTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQ 130 (217)
Q Consensus 51 ~~is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (217)
..++++++.+.++.+.+|||+|++.+|..+|||||+|+|+..+.. .
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~----------------------------------~ 47 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLSQLES----------------------------------E 47 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChhHhcc----------------------------------c
Confidence 468999999988555899999999999999999999999974321 0
Q ss_pred HHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCc
Q 027877 131 VEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 131 ~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~ 184 (217)
.... +++++||+||++|.++..++..|.+.||+|+++|+||+.+|+..|+|+
T Consensus 48 -~~~~-~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 48 -GLPL-VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred -ccCC-CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 0113 678899999999999999999999999999999999999999999874
No 7
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.86 E-value=3.7e-21 Score=154.16 Aligned_cols=114 Identities=23% Similarity=0.311 Sum_probs=88.3
Q ss_pred CCCcccCHHHHHHHh-hCCcEEEecCChh----hhhhc---------cCCCcEeccCcccccchhHHHHHHhhhhccccc
Q 027877 48 GAIQPFTPKEAAAAM-KEGFMLLDIRPIW----ETEKA---------RVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIG 113 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-~~~~~lIDvR~~~----ey~~g---------hIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~ 113 (217)
.....++++|+.+++ +++.+|||||++. ||..| |||||+|+|+.....
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~------------------ 94 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN------------------ 94 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC------------------
Confidence 567889999999999 6678999999865 45544 999999999642110
Q ss_pred cccCCcccCCChhHHHHHHHhCC-CCCCeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCc
Q 027877 114 LWTGQKFTMFNPNFVRQVEAAVP-DKESKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~ 184 (217)
+. ....+.|.+.+.+... +++++||+||++|. +|..+++.|+.+||+||++|+||+.+|+.+|+|+
T Consensus 95 -l~----~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 95 -LA----PAWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred -CC----CchhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 00 0011234555544332 68899999999987 8999999999999999999999999999999985
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.85 E-value=5.5e-21 Score=139.47 Aligned_cols=91 Identities=24% Similarity=0.294 Sum_probs=75.0
Q ss_pred cCHHHHHHHh-h--CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 53 FTPKEAAAAM-K--EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 53 is~~e~~~~l-~--~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
|+++++.+++ + +++++||||++.||..||||||+|+|+..+. .
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~----------------------------------~ 46 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLV----------------------------------Q 46 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHH----------------------------------H
Confidence 5788999888 3 2578999999999999999999999985321 1
Q ss_pred HHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 130 QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
......+.++++||+||++|.|+..++..|+.+||+ |++|+||+.+|.
T Consensus 47 ~~~~~~~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 47 ETDHFAPVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHhcccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 111222245779999999999999999999999998 999999999996
No 9
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.84 E-value=1.4e-20 Score=138.35 Aligned_cols=97 Identities=24% Similarity=0.416 Sum_probs=78.2
Q ss_pred cCHHHHHHHh--hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHH
Q 027877 53 FTPKEAAAAM--KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQ 130 (217)
Q Consensus 53 is~~e~~~~l--~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (217)
|+++++.+++ +.+++|||||++.||..||||||+|+|+..+... . .+....
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~--------------------------~-~~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD--------------------------F-LEIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH--------------------------H-HHhhHH
Confidence 5788999988 3568999999999999999999999999754210 0 000112
Q ss_pred HHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 131 VEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 131 ~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
....+ +++++||+||++|.||..++..|++.||+ ++.|.||+.+|.
T Consensus 54 ~~~~~-~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 54 ILDQL-PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHhhC-CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 23344 67889999999999999999999999997 999999999995
No 10
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.84 E-value=8.9e-21 Score=140.37 Aligned_cols=102 Identities=23% Similarity=0.362 Sum_probs=80.7
Q ss_pred CHHHHHHHhh--CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHH
Q 027877 54 TPKEAAAAMK--EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQV 131 (217)
Q Consensus 54 s~~e~~~~l~--~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (217)
+++++.++++ ++.+|||+|++.+|..||||||+|+|+..+... ......+|.+.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~-----------------------~~~~~~~~~~~~ 58 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDA-----------------------LALSEEEFEKKY 58 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhh-----------------------hCCCHHHHHHHh
Confidence 5678888774 469999999999999999999999999753210 001123454444
Q ss_pred HHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 132 EAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 132 ~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
.....+++++||+||++|.+|..+++.|+..||+||++|+||+.+|.
T Consensus 59 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 59 GFPKPSKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred cccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 33343678899999999999999999999999999999999999995
No 11
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.84 E-value=3.8e-20 Score=142.48 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=81.2
Q ss_pred cCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCccc-CCChhHHHHH
Q 027877 53 FTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFT-MFNPNFVRQV 131 (217)
Q Consensus 53 is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 131 (217)
|+++|+.++++++.+|||||++.||..||||||+|+|+..+..+....++.++...... .+-+.... ...+++.+.+
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAA--IELGLELVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHH--HHHHHHHHhhhHHHHHHHH
Confidence 67899998887778999999999999999999999999754321000000000000000 00000000 0001222232
Q ss_pred HHhCCCCCCeEEEEeC-CCchHHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 132 EAAVPDKESKLLVACG-EGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 132 ~~~~~~~~~~IvlyC~-~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
.....+++++||+||+ +|.||..+++.|+.+|| ++++|+||+.+|+.
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 WEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 2122388999999997 68899999999999999 79999999999974
No 12
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.83 E-value=2.7e-20 Score=139.48 Aligned_cols=99 Identities=23% Similarity=0.291 Sum_probs=82.9
Q ss_pred CcccCHHHHHHHh-h--CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChh
Q 027877 50 IQPFTPKEAAAAM-K--EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPN 126 (217)
Q Consensus 50 ~~~is~~e~~~~l-~--~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (217)
...++++++.+++ . ++.+|||+|++.+|..||||||+|+|...+.
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~-------------------------------- 54 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC-------------------------------- 54 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh--------------------------------
Confidence 4578999999988 3 4589999999999999999999999986321
Q ss_pred HHHHHHHhCCCCCCeEEEEeCCCc--hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCc
Q 027877 127 FVRQVEAAVPDKESKLLVACGEGL--RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 127 ~~~~~~~~~~~~~~~IvlyC~~G~--ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~ 184 (217)
......+ +++++||+||++|. ++..+++.|++.|| ++++|+||+.+|+.+|+|+
T Consensus 55 --~~~~~~i-~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 55 --ENATAKL-DKEKLFVVYCDGPGCNGATKAALKLAELGF-PVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred --hHhhhcC-CCCCeEEEEECCCCCchHHHHHHHHHHcCC-eEEEecCCHHHHHHCCCCC
Confidence 0111234 77899999999874 89999999999999 5999999999999999875
No 13
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.82 E-value=5.4e-20 Score=139.79 Aligned_cols=112 Identities=18% Similarity=0.107 Sum_probs=86.1
Q ss_pred cCHHHHHHHh-hCCcEEEecCCh-------hhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCC
Q 027877 53 FTPKEAAAAM-KEGFMLLDIRPI-------WETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFN 124 (217)
Q Consensus 53 is~~e~~~~l-~~~~~lIDvR~~-------~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (217)
++++++.+++ +.+.+|||+|++ .+|..||||||+|+|+..+..... .+ .......
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~---------------~~--~~~~~~~ 64 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS---------------PG--PHMLPSP 64 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC---------------CC--CCCCCCH
Confidence 6889999988 557899999999 999999999999999975432100 00 0111122
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCC-CchHHHHHHHHHHcCCcceeeccccHHHHHhCC
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGE-GLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGD 181 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~-G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g 181 (217)
+++.+.+.....+++++||+||++ |.++..+++.|+..||+||++|+||+.+|..+|
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 345555444333788999999999 589999999999999999999999999998765
No 14
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.82 E-value=3.9e-20 Score=141.14 Aligned_cols=110 Identities=25% Similarity=0.283 Sum_probs=85.7
Q ss_pred CCCcccCHHHHHHHh-h-CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCCh
Q 027877 48 GAIQPFTPKEAAAAM-K-EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNP 125 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-~-~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (217)
.....++++++.+++ . .+++|||+|++.||..+|||||+|+|+..+.... .
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~---------------------------~ 57 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKA---------------------------A 57 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhh---------------------------h
Confidence 445679999999988 3 6789999999999999999999999997542110 0
Q ss_pred hHHH-HHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCC-cceeeccccHHHHHhCCCCc
Q 027877 126 NFVR-QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGY-RNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 126 ~~~~-~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~-~nv~~l~GG~~~W~~~g~p~ 184 (217)
++.. .......+++++||+||++|.||..++..|++.|| +|++.++||+.+|.....+.
T Consensus 58 ~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 58 ELKSLQELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred hhhhhhhcccccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 0000 00011227789999999999999999999999999 79999999999998765543
No 15
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.82 E-value=4.1e-20 Score=140.24 Aligned_cols=102 Identities=30% Similarity=0.441 Sum_probs=84.3
Q ss_pred cCHHHHHHHh-h-CCcEEEecCChhhhh-hccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 53 FTPKEAAAAM-K-EGFMLLDIRPIWETE-KARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 53 is~~e~~~~l-~-~~~~lIDvR~~~ey~-~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
|+++++.+++ + ++.+|||||++.||+ .||||||+|+|+..+... .....+..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~-------------------------~~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM-------------------------EINPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc-------------------------ccCHHHHH
Confidence 5789999988 4 579999999999999 999999999999754210 11234555
Q ss_pred HHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhC
Q 027877 130 QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~ 180 (217)
.+.... +++++||+||++|.+|..++..|.+.||+|++.+.||+.+|++.
T Consensus 56 ~l~~~~-~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 56 ELEEKV-GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHhhC-CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 555545 77889999999999999999999999999999999999999743
No 16
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.82 E-value=6e-20 Score=132.43 Aligned_cols=98 Identities=29% Similarity=0.354 Sum_probs=77.2
Q ss_pred CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeEE
Q 027877 64 EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKLL 143 (217)
Q Consensus 64 ~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iv 143 (217)
++++|||+|++.||..+|||||+|+|+..+...... .....+.+.......+++++||
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~iv 60 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGE----------------------LDILEFEELLKRLGLDKDKPVV 60 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCC----------------------cCHHHHHHHHHHcCCCCCCeEE
Confidence 578999999999999999999999999754321000 0001233333333347889999
Q ss_pred EEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCC
Q 027877 144 VACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFP 183 (217)
Q Consensus 144 lyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p 183 (217)
+||.+|.++..++..|++.||++|++|+||+.+|...+.|
T Consensus 61 ~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 61 VYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred EEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 9999999999999999999999999999999999988764
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.82 E-value=8.8e-20 Score=134.43 Aligned_cols=94 Identities=28% Similarity=0.363 Sum_probs=77.7
Q ss_pred cCHHHHHHHh-hC--CcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 53 FTPKEAAAAM-KE--GFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 53 is~~e~~~~l-~~--~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
|+++++.+++ .+ +.+|||+|++.||..+|||||+|+|+..+. ++.+
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~-------------------------------~~~~ 50 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIP-------------------------------ERSK 50 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHH-------------------------------HHHH
Confidence 6889999988 32 589999999999999999999999986321 1122
Q ss_pred HHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 130 QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
.+.. . +++++||+||++|.||..++..|.+.||++|++|+||+.+|..
T Consensus 51 ~~~~-~-~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 51 ELDS-D-NPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred Hhcc-c-CCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 2211 1 4688999999999999999999999999999999999999964
No 18
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.82 E-value=1.1e-19 Score=131.26 Aligned_cols=89 Identities=28% Similarity=0.479 Sum_probs=76.5
Q ss_pred cCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHH
Q 027877 53 FTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVE 132 (217)
Q Consensus 53 is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (217)
++++++.+++.++.++||+|+..+|..||||||+|+|+..+ .+.+
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~----------------------------------~~~~- 45 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDEL----------------------------------RDRL- 45 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHHHH----------------------------------HHHH-
Confidence 46888888887788999999999999999999999998522 2222
Q ss_pred HhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 133 AAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 133 ~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
..+ +.+++||+||++|.++..++..|++.|| ++++|+||+.+|+
T Consensus 46 ~~~-~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 46 NEL-PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred Hhc-CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 224 6678999999999999999999999999 9999999999996
No 19
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.81 E-value=7.6e-20 Score=134.41 Aligned_cols=101 Identities=23% Similarity=0.408 Sum_probs=78.6
Q ss_pred cCHHHHHHHh-hCCcEEEecCChhhh-hhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHH
Q 027877 53 FTPKEAAAAM-KEGFMLLDIRPIWET-EKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQ 130 (217)
Q Consensus 53 is~~e~~~~l-~~~~~lIDvR~~~ey-~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (217)
|+++++.+.+ +.+.+|||+|++.+| ..||||||+|+|+..+... .+ ....+.
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~-------------------~~-----~~~~~~-- 54 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFW-------------------AD-----PDSPYH-- 54 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhh-------------------cC-----cccccc--
Confidence 5788998888 567899999999998 5799999999998643210 00 000000
Q ss_pred HHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCC
Q 027877 131 VEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGD 181 (217)
Q Consensus 131 ~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g 181 (217)
...+ +++++||+||++|.++..+++.|+..||+||++|+||+.+|..+|
T Consensus 55 -~~~~-~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 55 -KPAF-AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred -ccCC-CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 0113 678899999999999999999999999999999999999998664
No 20
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.81 E-value=6.3e-20 Score=138.41 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=81.5
Q ss_pred cCHHHHHHHh-hCCcEEEecCChhhhhh-----------ccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcc
Q 027877 53 FTPKEAAAAM-KEGFMLLDIRPIWETEK-----------ARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKF 120 (217)
Q Consensus 53 is~~e~~~~l-~~~~~lIDvR~~~ey~~-----------ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (217)
++++++.+++ +.+.+|||+|+..||.. ||||||+|+|+..+... ..
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~----------------------~~ 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE----------------------DG 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCC----------------------CC
Confidence 4678888888 55689999999999987 99999999999744211 00
Q ss_pred cCCCh-hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 121 TMFNP-NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 121 ~~~~~-~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
...++ ++.+.+.....+++++||+||++|.+|..+++.|+.+||+|+++|+||+.+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 11223 33333333333688999999999999999999999999999999999999996
No 21
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.81 E-value=1.9e-19 Score=130.83 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=78.0
Q ss_pred ccCHHHHHHHh-h-CCcEEEecCChhhhhh--ccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhH
Q 027877 52 PFTPKEAAAAM-K-EGFMLLDIRPIWETEK--ARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNF 127 (217)
Q Consensus 52 ~is~~e~~~~l-~-~~~~lIDvR~~~ey~~--ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
.++++++.+++ + .+++|||+|++.+|.. ||||||+|+|+..+
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~---------------------------------- 46 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSL---------------------------------- 46 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHH----------------------------------
Confidence 36788998888 3 5689999999999999 99999999999632
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
.+. ...+ +++++||+||++|.+|..++..|+..||+||++|+||+.+|.
T Consensus 47 ~~~-~~~~-~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 47 DDW-LGDL-DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHH-Hhhc-CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 111 2234 688899999999999999999999999999999999999995
No 22
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.81 E-value=1.5e-19 Score=138.09 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=77.6
Q ss_pred cccCHHHHHHHh-h------CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCC
Q 027877 51 QPFTPKEAAAAM-K------EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMF 123 (217)
Q Consensus 51 ~~is~~e~~~~l-~------~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (217)
..|+++++.+++ + ++++|||||++.||..||||||+|+|+..
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~------------------------------- 50 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKD------------------------------- 50 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHH-------------------------------
Confidence 468999999998 3 36899999999999999999999999851
Q ss_pred ChhHHHHHHH----hCCCCCCeEEEEeC-CCchHHHHHHHHHHc------------CCcceeeccccHHHHH
Q 027877 124 NPNFVRQVEA----AVPDKESKLLVACG-EGLRSMMAASKLYEG------------GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 124 ~~~~~~~~~~----~~~~~~~~IvlyC~-~G~ra~~aa~~L~~~------------G~~nv~~l~GG~~~W~ 178 (217)
++...+.. ...+++++||+||+ +|.||..+++.|+.. ||++|++|+|||.+|.
T Consensus 51 --~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 51 --ELEEFFLDKPGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred --HHHHHHHHhhcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 11111111 11278899999997 999999999999985 9999999999999984
No 23
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.81 E-value=7.5e-20 Score=135.26 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=77.1
Q ss_pred cCHHHHHHHh-h--CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 53 FTPKEAAAAM-K--EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 53 is~~e~~~~l-~--~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
|+++++.+++ + .+++|||+|++.||..||||||+|+|+..+....+ ....... .+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~--------------------~~~~~~~--~~ 58 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEG--------------------ELEQLPT--VP 58 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccc--------------------ccccccc--hH
Confidence 6889999998 3 26899999999999999999999999874421000 0000000 11
Q ss_pred HHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 130 QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
.+.. ..+++||+||++|.+|..+++.|+..||+||++|+||+.+|+
T Consensus 59 ~~~~---~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 59 RLEN---YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHh---hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 1111 347799999999999999999999999999999999999995
No 24
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.80 E-value=1.6e-19 Score=133.92 Aligned_cols=106 Identities=26% Similarity=0.455 Sum_probs=77.7
Q ss_pred CHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHH
Q 027877 54 TPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVE 132 (217)
Q Consensus 54 s~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (217)
|++|+++.+ +++++|||+|++.+|..||||||+|+|+..+... .. ........+......
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~-~~------------------~~~~~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPD-EP------------------SLSEDKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSS-SS------------------BCHHHHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccc-cc------------------ccccccccccccccc
Confidence 688999998 8899999999999999999999999999643100 00 000000011122222
Q ss_pred HhCCCCCCeEEEEeCCCchHHHHHHH-----HHHcCCcceeeccccHHHHHh
Q 027877 133 AAVPDKESKLLVACGEGLRSMMAASK-----LYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 133 ~~~~~~~~~IvlyC~~G~ra~~aa~~-----L~~~G~~nv~~l~GG~~~W~~ 179 (217)
... +.+++||+||.+|.++..++.. |..+||++|++|+|||.+|.+
T Consensus 62 ~~~-~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 62 KKI-DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HGS-TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccc-cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 223 7888999999988887776666 889999999999999999975
No 25
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.80 E-value=3.3e-19 Score=160.31 Aligned_cols=104 Identities=30% Similarity=0.526 Sum_probs=89.7
Q ss_pred CcccCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 50 IQPFTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 50 ~~~is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
+..++++++.+.++++.+|||+|++.||..||||||+|+|+..+ .+
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~~l----------------------------------~~ 47 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGFL----------------------------------EL 47 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHHHH----------------------------------HH
Confidence 46789999999886679999999999999999999999998522 11
Q ss_pred HHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccC
Q 027877 130 QVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEG 187 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~ 187 (217)
.+....++++++||+||++|.||..+++.|++.||+||++|+||+.+|+.+|+|++..
T Consensus 48 ~~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 48 RIETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred HHhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 2222233678999999999999999999999999999999999999999999999876
No 26
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.80 E-value=3.4e-19 Score=140.32 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=78.9
Q ss_pred HHHh--hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCC
Q 027877 59 AAAM--KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVP 136 (217)
Q Consensus 59 ~~~l--~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (217)
.+++ +.+++|||||++.+|..||||||+|+|.. ++.+.+.+ +
T Consensus 3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~----------------------------------~l~~~l~~-l- 46 (145)
T cd01535 3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRA----------------------------------QLAQALEK-L- 46 (145)
T ss_pred HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHH----------------------------------HHHHHHHh-c-
Confidence 4444 34589999999999999999999999874 23333333 4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccC
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEG 187 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~ 187 (217)
+.+.+||+||.+|.+|..++..|+..||++|++|+||+.+|+.+|+|++++
T Consensus 47 ~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 47 PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 567899999999999999999999999999999999999999999999876
No 27
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.80 E-value=2.6e-19 Score=130.76 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=70.4
Q ss_pred hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeE
Q 027877 63 KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKL 142 (217)
Q Consensus 63 ~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 142 (217)
+++++|||+|++.+|..||||||+|+|+..+.. ..+..+.+ ... +++++|
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~----------------------------~~~~~~~~-~~~-~~~~~i 59 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVL----------------------------RSQELQAL-EAP-GRATRY 59 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcC----------------------------CHHHHHHh-hcC-CCCCCE
Confidence 467899999999999999999999999864321 11112221 222 678899
Q ss_pred EEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 143 LVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 143 vlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
|+||++|.++..++..|+..||+||++|+||+.+|.+
T Consensus 60 vv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 60 VLTCDGSLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999999999963
No 28
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.80 E-value=3.5e-19 Score=154.23 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=94.1
Q ss_pred cccCHHHHHHHh-hCCcEEEecCC----------hhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCc
Q 027877 51 QPFTPKEAAAAM-KEGFMLLDIRP----------IWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQK 119 (217)
Q Consensus 51 ~~is~~e~~~~l-~~~~~lIDvR~----------~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (217)
..++++++.+.+ +++++|||+|+ +.+|..||||||+|+|+..+.....+ ..
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~------------------~~ 66 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSP------------------LP 66 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCC------------------CC
Confidence 458999999999 77899999996 68899999999999998643211000 00
Q ss_pred ccCC-ChhHHHHHHHhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCc
Q 027877 120 FTMF-NPNFVRQVEAAVPDKESKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKE 189 (217)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~ 189 (217)
.... ..+|.+.+.+...+++++||+||+++. .+.++++.|+.+||+||++|+||+.+|.++|+|+++...
T Consensus 67 ~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 67 HMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 1112 235555555554588999999999876 577889999999999999999999999999999988753
No 29
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=5.4e-19 Score=128.40 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=68.3
Q ss_pred hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeE
Q 027877 63 KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKL 142 (217)
Q Consensus 63 ~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 142 (217)
+++++|||+|++.||..+|||||+|+|+..+. .......++++++|
T Consensus 8 ~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~----------------------------------~~~~~~~~~~~~~i 53 (92)
T cd01532 8 REEIALIDVREEDPFAQSHPLWAANLPLSRLE----------------------------------LDAWVRIPRRDTPI 53 (92)
T ss_pred CCCeEEEECCCHHHHhhCCcccCeeCCHHHHH----------------------------------hhhHhhCCCCCCeE
Confidence 57789999999999999999999999985321 00111232458899
Q ss_pred EEEeCCCch--HHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 143 LVACGEGLR--SMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 143 vlyC~~G~r--a~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
|+||++|.+ |..+++.|++.||+||++|+||+.+|++
T Consensus 54 vl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 54 VVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred EEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 999999876 6899999999999999999999999963
No 30
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.79 E-value=6e-19 Score=155.53 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=94.1
Q ss_pred cccCHHHHHHHh-hCCcEEEecC--------C-hhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcc
Q 027877 51 QPFTPKEAAAAM-KEGFMLLDIR--------P-IWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKF 120 (217)
Q Consensus 51 ~~is~~e~~~~l-~~~~~lIDvR--------~-~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (217)
..|+++++.+.+ +++++|||+| + ..+|..||||||+|+|+..+.....+ ....
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~-----------------~~~~ 84 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD-----------------LPHM 84 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC-----------------cCCC
Confidence 579999999999 6779999996 3 37899999999999998654321000 0001
Q ss_pred cCCChhHHHHHHHhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCc
Q 027877 121 TMFNPNFVRQVEAAVPDKESKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKE 189 (217)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~ 189 (217)
.....+|.+.+.+...+++++||+||++|. .+.++++.|+.+||+||++|+||+.+|..+|+|++++.+
T Consensus 85 lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~ 154 (320)
T PLN02723 85 LPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSAS 154 (320)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCC
Confidence 112245666665555578899999998876 567888999999999999999999999999999988653
No 31
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.78 E-value=1.1e-18 Score=165.30 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=96.4
Q ss_pred cccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 51 QPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 51 ~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
..|+++|+.+++ +++++|||+|+..+|..||||||+|+|+..+..... ..........+|.+
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~-----------------~~~~~lp~~~~l~~ 71 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP-----------------PAPGLLPDTADLEQ 71 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC-----------------CCCCCCCCHHHHHH
Confidence 469999999999 667999999999999999999999999864211000 00011111245666
Q ss_pred HHHHhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCc
Q 027877 130 QVEAAVPDKESKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKE 189 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~ 189 (217)
.+.+...+++++||+||++|. ++.++++.|+.+|+++|++|+||+.+|+.+|+|++++.+
T Consensus 72 ~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~ 132 (610)
T PRK09629 72 LFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP 132 (610)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence 666655588999999999774 888999999999999999999999999999999988754
No 32
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.78 E-value=7.5e-19 Score=156.12 Aligned_cols=153 Identities=22% Similarity=0.311 Sum_probs=105.6
Q ss_pred CHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHH
Q 027877 54 TPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEA 133 (217)
Q Consensus 54 s~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (217)
+..++.+.+.++.+|||||++.||..||||||+|+|+....++...++++++..+...... +.....+++.+.+.+
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~l----g~~lv~~~l~~~~~~ 79 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIAL----GHALVAGNIAAHREE 79 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHh----hhhhcchhHHHHHHH
Confidence 4567777666789999999999999999999999999876666666667765433211000 001222333333322
Q ss_pred ---hCCCCCCeEEEEe-CCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccC-CccccccccCc-hHHHHHHHH
Q 027877 134 ---AVPDKESKLLVAC-GEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEG-KEKLQYATIGG-VSYYFLRLL 207 (217)
Q Consensus 134 ---~~~~~~~~IvlyC-~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~-~~~~~~~~~~~-~~~~~~~~~ 207 (217)
..++++++||+|| ++|.||..+++.|...|| +++.|+||+.+|+..+.+.... +.+..+..++| ++---+.++
T Consensus 80 ~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL 158 (345)
T PRK11784 80 AWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELL 158 (345)
T ss_pred HHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHH
Confidence 2223788999999 578899999999999999 7999999999999999877665 34556665665 333333444
Q ss_pred HHHH
Q 027877 208 LLLQ 211 (217)
Q Consensus 208 ~~~~ 211 (217)
.-|.
T Consensus 159 ~~L~ 162 (345)
T PRK11784 159 QALA 162 (345)
T ss_pred HHHH
Confidence 3333
No 33
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.77 E-value=1.3e-18 Score=135.96 Aligned_cols=108 Identities=20% Similarity=0.221 Sum_probs=82.8
Q ss_pred cCHHHHHHHhh-----CCcEEEecCCh--------hhhhh------------ccCCCcEeccCcccccchhHHHHHHhhh
Q 027877 53 FTPKEAAAAMK-----EGFMLLDIRPI--------WETEK------------ARVKGSLHVPLFVEDRDYSAITLLKKWV 107 (217)
Q Consensus 53 is~~e~~~~l~-----~~~~lIDvR~~--------~ey~~------------ghIpGAinip~~~~~~~~~~~~~~~~~~ 107 (217)
++++++.+.++ ++++|||+|+. .+|.. ||||||+|+|+..+......
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~-------- 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGF-------- 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCC--------
Confidence 57889988884 56999999987 89998 99999999998643211000
Q ss_pred hccccccccCCcccCCC-hhHHHHHHHhCCCCCCeEEEEeCC---CchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 108 HFGYIGLWTGQKFTMFN-PNFVRQVEAAVPDKESKLLVACGE---GLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~IvlyC~~---G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
......+ .+|.+.+.+..++.+++||+||++ |..+.++++.|+.+|++||++|+||+.+|+
T Consensus 73 ----------~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 ----------EESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred ----------CCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 0011112 356666655555889999999986 678999999999999999999999999996
No 34
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.77 E-value=7.1e-19 Score=154.25 Aligned_cols=128 Identities=24% Similarity=0.302 Sum_probs=91.3
Q ss_pred CcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCC---hhHHHHHHHhCCCCCCe
Q 027877 65 GFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFN---PNFVRQVEAAVPDKESK 141 (217)
Q Consensus 65 ~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 141 (217)
+.+|||||++.||..||||||+|+|+....++...++++++.........-. .... +++++++.... +.+++
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~----~~v~~~l~~~i~~~~~~~-~~~~~ 76 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGL----ALVSPNLAAHVEQWRAFA-DGPPQ 76 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhH----hhhhHHHHHHHHHHHhhc-CCCCc
Confidence 4689999999999999999999999987766666777777544321100000 0111 12334443333 55567
Q ss_pred EEEEeC-CCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccC-CccccccccCc
Q 027877 142 LLVACG-EGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEG-KEKLQYATIGG 198 (217)
Q Consensus 142 IvlyC~-~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~-~~~~~~~~~~~ 198 (217)
||+||. +|.||..+++.|+.+|| ++++|+||+.+|+..+.+.... +.+.++..++|
T Consensus 77 vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g 134 (311)
T TIGR03167 77 PLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGG 134 (311)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCceeccCC
Confidence 999995 78899999999999999 7999999999999999888775 33444443444
No 35
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.76 E-value=2.1e-18 Score=122.56 Aligned_cols=86 Identities=28% Similarity=0.354 Sum_probs=71.6
Q ss_pred HHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCC
Q 027877 59 AAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPD 137 (217)
Q Consensus 59 ~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (217)
.+++ .++..|||+|++.+|..+|||||+|+|+..+.. .......+
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~----------------------------------~~~~~~~~ 48 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEE----------------------------------RAALLELD 48 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhh----------------------------------HHHhhccC
Confidence 3344 678999999999999999999999999963211 10112227
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
++++||+||++|.++..++..|+..||.++++|+||+.+|.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 88999999999999999999999999999999999999994
No 36
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.76 E-value=3.2e-18 Score=128.72 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=75.9
Q ss_pred CcccCHHHHHHHh-h--CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChh
Q 027877 50 IQPFTPKEAAAAM-K--EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPN 126 (217)
Q Consensus 50 ~~~is~~e~~~~l-~--~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (217)
+..|+++++.+++ . ++.+|||||+. ||..||||||+|+|+..+.. .
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~------------------------------~ 49 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKA------------------------------Q 49 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhh------------------------------C
Confidence 3578999999988 3 45789999999 99999999999999974321 1
Q ss_pred HHHHHHH-hCCCCCCeEEEEeC-CCchHHHHHHHHHH--------cCCcceeeccccHHHHHhC
Q 027877 127 FVRQVEA-AVPDKESKLLVACG-EGLRSMMAASKLYE--------GGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 127 ~~~~~~~-~~~~~~~~IvlyC~-~G~ra~~aa~~L~~--------~G~~nv~~l~GG~~~W~~~ 180 (217)
...+.. ...+++++||+||. +|.|+..++..|.+ .|+.||++|+||+.+|++.
T Consensus 50 -~~~~~~~~~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 50 -LNQLVQLLSGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred -HHHHHHHHhcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 111111 11156789999998 66788888877654 4999999999999999753
No 37
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.76 E-value=4.2e-18 Score=126.30 Aligned_cols=82 Identities=24% Similarity=0.382 Sum_probs=68.8
Q ss_pred hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeE
Q 027877 63 KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKL 142 (217)
Q Consensus 63 ~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 142 (217)
.....+||+|++.||..||||||+|+|+.++ ...+.....+++.+|
T Consensus 16 ~~~~~lIDvR~~~ef~~ghIpgAinip~~~l----------------------------------~~~l~~~~~~~~~~v 61 (101)
T TIGR02981 16 FAAEHWIDVRIPEQYQQEHIQGAINIPLKEI----------------------------------KEHIATAVPDKNDTV 61 (101)
T ss_pred ccCCEEEECCCHHHHhcCCCCCCEECCHHHH----------------------------------HHHHHHhCCCCCCeE
Confidence 5677899999999999999999999999632 222222233667899
Q ss_pred EEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 143 LVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 143 vlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
|+||++|.+|..++..|++.||+|++.+ ||+.+|.-
T Consensus 62 vlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 62 KLYCNAGRQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 9999999999999999999999999985 99999964
No 38
>PRK01415 hypothetical protein; Validated
Probab=99.75 E-value=2.8e-18 Score=145.63 Aligned_cols=103 Identities=23% Similarity=0.339 Sum_probs=85.1
Q ss_pred CCcccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhH
Q 027877 49 AIQPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNF 127 (217)
Q Consensus 49 ~~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
.-..|+++++.+++ +++++|||||++.||..||||||+|+|...+.+ .++.
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e----------------------------~~~~ 161 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ----------------------------FPAW 161 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh----------------------------hHHH
Confidence 45689999999999 788999999999999999999999999864321 0111
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCC
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGD 181 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g 181 (217)
.+... .. +++++|++||.+|.||..|+..|++.||+||+.|.||+.+|.+..
T Consensus 162 ~~~~~-~~-~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 162 VQQNQ-EL-LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred Hhhhh-hh-cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 11111 12 678899999999999999999999999999999999999998653
No 39
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.75 E-value=4.1e-18 Score=145.94 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=89.3
Q ss_pred cccchhhhhhhHHHHhhcCCCcccCHHHHHHHh-h------CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHH
Q 027877 30 KSLQINAKASNARQLIQSGAIQPFTPKEAAAAM-K------EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITL 102 (217)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~is~~e~~~~l-~------~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~ 102 (217)
.++++.. .+....+........++++++.+++ + ++.+|||||++.||+.||||||+|+|+..+.+
T Consensus 90 ~k~eiv~-~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~------- 161 (257)
T PRK05320 90 LKREIIT-MKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE------- 161 (257)
T ss_pred hhhHHhh-cCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-------
Confidence 3344443 3333333344567889999999888 2 24799999999999999999999999964321
Q ss_pred HHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhC
Q 027877 103 LKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~ 180 (217)
.+..+...... .++++|++||++|.|+..|+..|++.||+||+.|+||+.+|.+.
T Consensus 162 ---------------------~~~~l~~~~~~--~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 162 ---------------------FPEALAAHRAD--LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ---------------------hHHHHHhhhhh--cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 01111111122 26789999999999999999999999999999999999999753
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.75 E-value=4.3e-18 Score=150.13 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=89.7
Q ss_pred ccCHHHHHHHh-hCCcEEEecCChhhh-----------hhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCc
Q 027877 52 PFTPKEAAAAM-KEGFMLLDIRPIWET-----------EKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQK 119 (217)
Q Consensus 52 ~is~~e~~~~l-~~~~~lIDvR~~~ey-----------~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (217)
.++.+++.+.+ +++++|||+|++.+| ..||||||+|+|+..+.+. ..
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~---------------------~~ 249 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDS---------------------SQ 249 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCC---------------------CC
Confidence 46888998888 567899999999888 4699999999999643221 01
Q ss_pred ccCCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh-CCCCcccC
Q 027877 120 FTMFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE-GDFPEIEG 187 (217)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~-~g~p~~~~ 187 (217)
.....+++.+.+.+...+++++||+||++|.+|..++..|+.+||+||++|+|||..|.. ..+|++++
T Consensus 250 ~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 250 TLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred CCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 111224555555544447889999999999999999999999999999999999999974 46787764
No 41
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.74 E-value=8e-18 Score=125.44 Aligned_cols=82 Identities=27% Similarity=0.391 Sum_probs=68.1
Q ss_pred hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeE
Q 027877 63 KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKL 142 (217)
Q Consensus 63 ~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 142 (217)
..+-.|||+|++.||..+|||||+|+|+.+ +.+.+.....+.+++|
T Consensus 18 ~~~~~lIDvR~~~ef~~ghIpGAiniP~~~----------------------------------l~~~l~~l~~~~~~~I 63 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQEHVQGAINIPLKE----------------------------------VKERIATAVPDKNDTV 63 (104)
T ss_pred cCCCEEEECCCHHHHhcCCCCccEECCHHH----------------------------------HHHHHHhcCCCCCCeE
Confidence 455679999999999999999999999852 2223333333567889
Q ss_pred EEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 143 LVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 143 vlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
|+||++|.+|..++..|.+.||+++++ .||+.+|.-
T Consensus 64 VlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 64 KLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred EEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 999999999999999999999999987 699999963
No 42
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.2e-17 Score=123.74 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=78.0
Q ss_pred hCCcEEEecCChhhhhhccCCC-cEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCe
Q 027877 63 KEGFMLLDIRPIWETEKARVKG-SLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESK 141 (217)
Q Consensus 63 ~~~~~lIDvR~~~ey~~ghIpG-Ainip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (217)
.++.+|||||++.||..+|||| ++|+|...+... .... . .+++++
T Consensus 18 ~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~-------------------------------~~~~-~--~~~~~~ 63 (110)
T COG0607 18 GEDAVLLDVREPEEYERGHIPGAAINIPLSELKAA-------------------------------ENLL-E--LPDDDP 63 (110)
T ss_pred cCCCEEEeccChhHhhhcCCCcceeeeecccchhh-------------------------------hccc-c--cCCCCe
Confidence 6789999999999999999999 999999855321 0000 0 268899
Q ss_pred EEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccC
Q 027877 142 LLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEG 187 (217)
Q Consensus 142 IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~ 187 (217)
||+||++|.||..++..|+.+||++++.+.||+.+|..++.|+...
T Consensus 64 ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 64 IVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 9999999999999999999999998999999999999999988653
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.74 E-value=6e-18 Score=146.53 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=86.8
Q ss_pred cCHHHHHHHh-hCCcEEEecCChhhhh-----------hccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcc
Q 027877 53 FTPKEAAAAM-KEGFMLLDIRPIWETE-----------KARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKF 120 (217)
Q Consensus 53 is~~e~~~~l-~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (217)
.+.+++.+.+ +.+++|||+|++.||. .||||||+|+|+..+.++ ..
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~----------------------~~ 212 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE----------------------GE 212 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC----------------------CC
Confidence 3455666555 5568999999999985 699999999998754321 00
Q ss_pred cCCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh-CCCCcccC
Q 027877 121 TMFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE-GDFPEIEG 187 (217)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~-~g~p~~~~ 187 (217)
.....++.+.+.....+++++||+||++|.+|..++..|+.+||+||++|+|||..|.. .++|++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 213 LKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred cCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 11123444444444447788999999999999999999999999999999999999986 79998865
No 44
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.73 E-value=1.5e-17 Score=146.25 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=84.2
Q ss_pred CCCcccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChh
Q 027877 48 GAIQPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPN 126 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (217)
.....++++++.+++ +++++|||||++.||..||||||+|+|+..+.+
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~------------------------------- 157 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE------------------------------- 157 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh-------------------------------
Confidence 445689999999988 778999999999999999999999999974421
Q ss_pred HHHHHHHh-CCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhC
Q 027877 127 FVRQVEAA-VPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 127 ~~~~~~~~-~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~ 180 (217)
+...+.+. ...++++||+||.+|.|+..++..|++.||+||+.|+||+.+|.+.
T Consensus 158 ~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 158 FPPWVEENLDPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred hHHHHHHhcCCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 11111111 1257889999999999999999999999999999999999999653
No 45
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=1.4e-17 Score=125.31 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=71.1
Q ss_pred cccCHHHHHHHh-h------CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCC
Q 027877 51 QPFTPKEAAAAM-K------EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMF 123 (217)
Q Consensus 51 ~~is~~e~~~~l-~------~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (217)
..++++++++++ + ++++|||||++ ||..||||||+|+|+..+...
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~--------------------------- 53 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQT--------------------------- 53 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHH---------------------------
Confidence 568999999998 3 35899999999 999999999999999743210
Q ss_pred ChhHHHHHHHhCCCCCCeEEEEeCC-CchHHHHHHHHH----HcCC--cceeeccccHHHHH
Q 027877 124 NPNFVRQVEAAVPDKESKLLVACGE-GLRSMMAASKLY----EGGY--RNLGWLAGGFNRAI 178 (217)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~IvlyC~~-G~ra~~aa~~L~----~~G~--~nv~~l~GG~~~W~ 178 (217)
-.+..+.+ ......+||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 54 ~~~~~~~~---~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 54 LPQVYALF---SLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHHHHHh---hhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 00111111 11345789999986 568877776544 4475 68999999999995
No 46
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.7e-17 Score=141.26 Aligned_cols=124 Identities=14% Similarity=0.029 Sum_probs=97.5
Q ss_pred CCcccCHHHHHHHh-hC-----CcEEEecCCh--hhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcc
Q 027877 49 AIQPFTPKEAAAAM-KE-----GFMLLDIRPI--WETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKF 120 (217)
Q Consensus 49 ~~~~is~~e~~~~l-~~-----~~~lIDvR~~--~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (217)
....++++++.+.+ ++ +..+++++.. .+|..+|||||+++++..+..+..+ +.+.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~-----------------~~~~ 71 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP-----------------LPHM 71 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC-----------------CCCC
Confidence 34568999999988 44 5566666655 8999999999999999865432110 1223
Q ss_pred cCCChhHHHHHHHhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCc
Q 027877 121 TMFNPNFVRQVEAAVPDKESKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKE 189 (217)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~ 189 (217)
....++|.+.+.+..++.+.+||+|++.+. .|.++++.|+.+|++||++|+||+.+|+++|+|+++.++
T Consensus 72 lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~ 141 (285)
T COG2897 72 LPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP 141 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC
Confidence 333457777777776699999999997665 899999999999999999999999999999999998643
No 47
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.70 E-value=6e-17 Score=153.47 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=90.3
Q ss_pred ccCHHHHHHHh-hCCcEEEecCChhhhh--------hccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccC
Q 027877 52 PFTPKEAAAAM-KEGFMLLDIRPIWETE--------KARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTM 122 (217)
Q Consensus 52 ~is~~e~~~~l-~~~~~lIDvR~~~ey~--------~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (217)
.++.+++.+.+ +.++.|||+|+++||. .||||||+|+|+..+.+. .+...
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~---------------------~~~lk 206 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDK---------------------ARNLR 206 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCC---------------------CCCCC
Confidence 57889999888 6678999999999995 699999999998643221 00011
Q ss_pred CChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh-CCCCcccC
Q 027877 123 FNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE-GDFPEIEG 187 (217)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~-~g~p~~~~ 187 (217)
..+++.+.+.+...+++++||+||++|.+|..+++.|+.+||+||++|+|||.+|.. .++|++++
T Consensus 207 ~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 207 IRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 123444444444447889999999999999999999999999999999999999975 57888865
No 48
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1e-16 Score=138.50 Aligned_cols=116 Identities=21% Similarity=0.242 Sum_probs=93.2
Q ss_pred cccCHHHHHHHh-hCCcEEEecCChhhhhh----------ccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCc
Q 027877 51 QPFTPKEAAAAM-KEGFMLLDIRPIWETEK----------ARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQK 119 (217)
Q Consensus 51 ~~is~~e~~~~l-~~~~~lIDvR~~~ey~~----------ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (217)
...+.++++..+ ....+|||+|++++|.. ||||||+|+|+..+.+ .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~----------------------~~ 213 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVD----------------------DG 213 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhc----------------------CC
Confidence 356667777777 66788999999999998 9999999999986543 12
Q ss_pred ccCCChhHHHHHHH-hCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH-hCCCCcccCC
Q 027877 120 FTMFNPNFVRQVEA-AVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI-EGDFPEIEGK 188 (217)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~-~~g~p~~~~~ 188 (217)
.....++..+.+.+ ...+.+++||+||++|.+|+..+..|+.+|+.+.++|+|++..|. ..+.|+++++
T Consensus 214 ~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 214 GLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 23334555556553 334899999999999999999999999999998899999999996 5556888765
No 49
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.68 E-value=1.4e-16 Score=144.01 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=85.0
Q ss_pred CCCcccCHHHHHHHh--hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCCh
Q 027877 48 GAIQPFTPKEAAAAM--KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNP 125 (217)
Q Consensus 48 ~~~~~is~~e~~~~l--~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (217)
.....++++++.+++ +.+++|||+|++.||..+|||||+|+|+..+.. .
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~-----------------------------~ 334 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILS-----------------------------G 334 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcc-----------------------------h
Confidence 455789999999988 345799999999999999999999999964321 0
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCC
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFP 183 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p 183 (217)
..+ ..+ +++++||+||++|.||..++..|++.||+||++|+||+.+|..+..+
T Consensus 335 ---~~~-~~l-~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 335 ---EAL-AKL-PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred ---hHH-hhC-CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 011 224 67889999999999999999999999999999999999999876543
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.65 E-value=3.9e-16 Score=139.46 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=79.2
Q ss_pred CCCcccCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhH
Q 027877 48 GAIQPFTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNF 127 (217)
Q Consensus 48 ~~~~~is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
.....++++++.+. ..+.+|||+|++.||..+|||||+|+|+..+..
T Consensus 258 ~~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~-------------------------------- 304 (355)
T PRK05597 258 GFGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLSAIRE-------------------------------- 304 (355)
T ss_pred CcccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHHHhhh--------------------------------
Confidence 34457888888855 466899999999999999999999999964321
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHh
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~ 179 (217)
.......+++++||+||++|.+|..+++.|++.||+||++|+||+.+|.+
T Consensus 305 --~~~~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 305 --GANPPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred --ccccccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 00011126778999999999999999999999999999999999999975
No 51
>PRK07411 hypothetical protein; Validated
Probab=99.64 E-value=6.5e-16 Score=139.66 Aligned_cols=105 Identities=30% Similarity=0.337 Sum_probs=84.2
Q ss_pred CCCcccCHHHHHHHh-hC--CcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCC
Q 027877 48 GAIQPFTPKEAAAAM-KE--GFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFN 124 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-~~--~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (217)
.....++++++.+++ .. +++|||||++.||..||||||+|+|+..+...
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~---------------------------- 330 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG---------------------------- 330 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc----------------------------
Confidence 556789999999988 22 57999999999999999999999999744210
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCCc
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~ 184 (217)
...+++.+ + .++++||+||++|.||..++..|+++||++ +.++||+.+|.+...|.
T Consensus 331 -~~~~~l~~-l-~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 331 -PGVEKVKE-L-LNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred -cchHHHhh-c-CCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 01122222 3 568899999999999999999999999975 57999999998776554
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.61 E-value=2.4e-15 Score=116.00 Aligned_cols=111 Identities=21% Similarity=0.194 Sum_probs=75.7
Q ss_pred cCHHHHHHHh-h--CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHH
Q 027877 53 FTPKEAAAAM-K--EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVR 129 (217)
Q Consensus 53 is~~e~~~~l-~--~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
|+++++.+.+ . ++++|||+|+..+|..+|||||+|+|+..+..+ ....+.... ......++..+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~---------~~~~~~~~~----~~~~~~~~~~~ 68 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRR---------RLQGGKILL----QQLLSCPEDRD 68 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHH---------hhcccchhh----hhhcCCHHHHH
Confidence 7899999998 3 579999999999999999999999999743211 000000000 00111223223
Q ss_pred HHHHhCCCCCCeEEEEeCCCch---------HHHHHHHHHH--cCCcceeeccccHHHHHh
Q 027877 130 QVEAAVPDKESKLLVACGEGLR---------SMMAASKLYE--GGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~r---------a~~aa~~L~~--~G~~nv~~l~GG~~~W~~ 179 (217)
.+.. ..+++|||||+++.+ +..++..|.. .|+.+|++|+||+.+|..
T Consensus 69 ~l~~---~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 69 RLRR---GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred HHhc---CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 3322 257899999988764 6666677777 467799999999999965
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.53 E-value=1.4e-14 Score=130.20 Aligned_cols=93 Identities=26% Similarity=0.339 Sum_probs=73.9
Q ss_pred ccCHHHHHHHh-hCCcEEEecCChhhhhhccCC---CcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhH
Q 027877 52 PFTPKEAAAAM-KEGFMLLDIRPIWETEKARVK---GSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNF 127 (217)
Q Consensus 52 ~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIp---GAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
.++++++.+++ +++.+|||||++.||+.+||| ||+|+|+..+... .++
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~----------------------------~~~ 323 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD----------------------------ADI 323 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc----------------------------hhh
Confidence 68999999988 556799999999999999998 5999999754210 011
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcc-eeeccccHH
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRN-LGWLAGGFN 175 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~n-v~~l~GG~~ 175 (217)
..++. .. +++ +||+||++|.||..++..|++.||++ |+.|.||+.
T Consensus 324 ~~~l~-~~-~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 324 LHALS-PI-DGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhhcc-cc-CCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 12221 12 333 89999999999999999999999986 999999985
No 54
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.38 E-value=2.7e-12 Score=109.75 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=96.9
Q ss_pred ccCHHHHHHHh-hCCcEEEecC---------ChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCccc
Q 027877 52 PFTPKEAAAAM-KEGFMLLDIR---------PIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFT 121 (217)
Q Consensus 52 ~is~~e~~~~l-~~~~~lIDvR---------~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (217)
.++++++.+.+ +.+..|||.- ...||...|||||.++.++.+.....+. .+..
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~-----------------~~~l 68 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPY-----------------RHML 68 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcc-----------------cccC
Confidence 47888898888 6779999975 3577888999999999998765332221 1222
Q ss_pred CCChhHHHHHHHhCCCCCCeEEEEeC--CCc-hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCcc
Q 027877 122 MFNPNFVRQVEAAVPDKESKLLVACG--EGL-RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKEK 190 (217)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~IvlyC~--~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~~ 190 (217)
...+.|.+.......+.+..+|||++ .|. .|.+++|.++.+|+++|+.|+||+.+|+..|+|+.++..+
T Consensus 69 p~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~ 140 (286)
T KOG1529|consen 69 PTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE 140 (286)
T ss_pred ccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc
Confidence 33356666666655588899999999 777 7999999999999999999999999999999999998754
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.37 E-value=7.7e-13 Score=113.63 Aligned_cols=100 Identities=19% Similarity=0.355 Sum_probs=84.8
Q ss_pred CCcccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhH
Q 027877 49 AIQPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNF 127 (217)
Q Consensus 49 ~~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
.-..|++++..+++ ++++++||+|+.-||+.||+.||++.+...+.+ -++.
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre----------------------------fP~~ 162 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE----------------------------FPAW 162 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh----------------------------hHHH
Confidence 35679999999999 999999999999999999999999999875532 2334
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
+++..+.. ++++|+.||.+|.|.-.+..+|+..||++||.|+||+-.+-
T Consensus 163 v~~~~~~~--~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~ 211 (308)
T COG1054 163 VEENLDLL--KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYL 211 (308)
T ss_pred HHHHHHhc--cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHh
Confidence 44444443 56699999999999999999999999999999999998774
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.29 E-value=8.9e-12 Score=115.63 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=64.4
Q ss_pred HHHHhhCCcEEEecCChhhhhhccCCC----cEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHH
Q 027877 58 AAAAMKEGFMLLDIRPIWETEKARVKG----SLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEA 133 (217)
Q Consensus 58 ~~~~l~~~~~lIDvR~~~ey~~ghIpG----Ainip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (217)
..+.+..+.++||||++.||..+|||| |+|+|+..+ ...+.
T Consensus 400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l----------------------------------~~~~~- 444 (482)
T PRK01269 400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKL----------------------------------STQFG- 444 (482)
T ss_pred HHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHH----------------------------------HHHHh-
Confidence 333336789999999999999999999 999999633 22222
Q ss_pred hCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeecc
Q 027877 134 AVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLA 171 (217)
Q Consensus 134 ~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~ 171 (217)
.+ +++++||+||++|.||..++..|+..||+||++|.
T Consensus 445 ~l-~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 445 DL-DQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred hc-CCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 23 67789999999999999999999999999999875
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=5.1e-11 Score=103.81 Aligned_cols=103 Identities=22% Similarity=0.333 Sum_probs=75.1
Q ss_pred cCCCcccCHHHHHHHh-h------CCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCc
Q 027877 47 SGAIQPFTPKEAAAAM-K------EGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQK 119 (217)
Q Consensus 47 ~~~~~~is~~e~~~~l-~------~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (217)
...++.|+++.++.++ + ..+.|||+|-+.||.+|||+||+|++..+...
T Consensus 152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~------------------------ 207 (325)
T KOG3772|consen 152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQ------------------------ 207 (325)
T ss_pred cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhh------------------------
Confidence 3568899999999998 2 23679999999999999999999999863211
Q ss_pred ccCCChhHHHHHHHhCC--CCCCeEEEEeCCC-chHHHHHHHHHH------------cCCcceeeccccHHHHHhC
Q 027877 120 FTMFNPNFVRQVEAAVP--DKESKLLVACGEG-LRSMMAASKLYE------------GGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 120 ~~~~~~~~~~~~~~~~~--~~~~~IvlyC~~G-~ra~~aa~~L~~------------~G~~nv~~l~GG~~~W~~~ 180 (217)
..|... .... .....+||||.-. .|+..+|..|+. +-|.++|+|+|||..|-..
T Consensus 208 -----~~f~~~--~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 208 -----DFFLLK--DGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred -----hhhccc--cccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 000000 0010 2334688999754 499999999994 3567899999999999643
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.14 E-value=5.5e-11 Score=104.07 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=83.7
Q ss_pred CCCcccCHHHHHHHh--hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCCh
Q 027877 48 GAIQPFTPKEAAAAM--KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNP 125 (217)
Q Consensus 48 ~~~~~is~~e~~~~l--~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (217)
....++++.++++.+ +...+++|||++.||+.-|+|.|+|||+.+++.+..
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~--------------------------- 366 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG--------------------------- 366 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh---------------------------
Confidence 456789999999999 578999999999999999999999999987653211
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCc-ceeeccccHHHHHhC
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYR-NLGWLAGGFNRAIEG 180 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~-nv~~l~GG~~~W~~~ 180 (217)
++.........++|++.|+.|+.|++|++.|++...+ +|+-+.||+.+|...
T Consensus 367 ---~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 367 ---KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred ---hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 1222233356778999999999999999999986654 688899999999754
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.83 E-value=9.7e-09 Score=88.07 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=75.2
Q ss_pred hCCcEEEecCChhhhh-----------hccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHH
Q 027877 63 KEGFMLLDIRPIWETE-----------KARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQV 131 (217)
Q Consensus 63 ~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (217)
..++.++|.|+..+|. .||||||+|+|+..+-.- ..+....+++...+
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~---------------------~g~~k~~edl~~~f 228 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDP---------------------DGFIKPAEDLKHLF 228 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccc---------------------ccccCCHHHHHHHH
Confidence 5679999999988875 489999999999754320 11122235555555
Q ss_pred HHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhC
Q 027877 132 EAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 132 ~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~ 180 (217)
.+.....++++|+-|..|..++..+..|...| .++.+|+|++..|...
T Consensus 229 ~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 229 AQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred HhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhhc
Confidence 55544678999999999999999999999999 7999999999999753
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.42 E-value=4.3e-07 Score=79.03 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=74.6
Q ss_pred CCCcccCHHHHHHHhh----CC---cEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcc
Q 027877 48 GAIQPFTPKEAAAAMK----EG---FMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKF 120 (217)
Q Consensus 48 ~~~~~is~~e~~~~l~----~~---~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (217)
-.+++|+++.++..++ .. -.|||+|=+.||.+|||-+|+||.-.+
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~---------------------------- 290 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK---------------------------- 290 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH----------------------------
Confidence 3578999999999882 23 459999999999999999999998641
Q ss_pred cCCChhHHHHHHHhCCCCCCeEEEEeCC-CchHHHHHHHHHHcC------------CcceeeccccHHHHHhC
Q 027877 121 TMFNPNFVRQVEAAVPDKESKLLVACGE-GLRSMMAASKLYEGG------------YRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~IvlyC~~-G~ra~~aa~~L~~~G------------~~nv~~l~GG~~~W~~~ 180 (217)
++...+.........-+|+.|.- ..|+...|.+|+.+. |.+||+|+|||.++-..
T Consensus 291 -----~l~~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 291 -----KLGLLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred -----HHHHHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 22222222221345678899974 459999999998543 56899999999988654
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=98.14 E-value=1.9e-06 Score=74.28 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=82.2
Q ss_pred HHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCC
Q 027877 58 AAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPD 137 (217)
Q Consensus 58 ~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (217)
..+++-++..+||||++.||..||.|+++|+|...-......++.+++..+....+...+..+.....+.++..++. -
T Consensus 8 ~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f--~ 85 (334)
T COG2603 8 YRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF--Q 85 (334)
T ss_pred HHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH--H
Confidence 33344678899999999999999999999999998888888888888866543333333322222222333332222 2
Q ss_pred CCCeEEEEeC-CCchHHHHHHHH-HHcCCcceeeccccHHHHHh
Q 027877 138 KESKLLVACG-EGLRSMMAASKL-YEGGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 138 ~~~~IvlyC~-~G~ra~~aa~~L-~~~G~~nv~~l~GG~~~W~~ 179 (217)
.+.++-++|. +|.|+...+.+| ...|+ +..-+.||+.+.+.
T Consensus 86 e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~-~~~r~iGGeKalrt 128 (334)
T COG2603 86 EENPVGILCARGGLRSKIVQKWLGYAAGI-DYPRVIGGEKALRT 128 (334)
T ss_pred HhCCcceeeccccchhHHHHHHHHHHHHh-hhhhhhchHHHHHH
Confidence 3445556684 666999999999 66887 56677899987753
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.98 E-value=0.0033 Score=47.19 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=41.0
Q ss_pred cccCHHHHHHHhhCC-cEEEecCChhhhhhccCC--------------CcEeccCcccccchhHHHHHHhhhhccccccc
Q 027877 51 QPFTPKEAAAAMKEG-FMLLDIRPIWETEKARVK--------------GSLHVPLFVEDRDYSAITLLKKWVHFGYIGLW 115 (217)
Q Consensus 51 ~~is~~e~~~~l~~~-~~lIDvR~~~ey~~ghIp--------------GAinip~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (217)
..++++++.++...+ -.||+.|+..|- .+-| ..+|+|+..
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~--~~qp~~~~~~~~a~~~Gl~y~~iPv~~----------------------- 67 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEE--PGQPSSAEEAAAAEALGLQYVHIPVDG----------------------- 67 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTST--TT-T-HHCHHHHHHHCT-EEEE----T-----------------------
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC--CCCCCHHHHHHHHHHcCCeEEEeecCC-----------------------
Confidence 368889998877444 599999987552 1112 146777642
Q ss_pred cCCcccCCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHH
Q 027877 116 TGQKFTMFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASK 158 (217)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~ 158 (217)
....++-++.+.+.+....++|++||++|.|+...+..
T Consensus 68 -----~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 68 -----GAITEEDVEAFADALESLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp -----TT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHH
Confidence 12234444444444424567999999999998766554
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.94 E-value=0.0064 Score=47.06 Aligned_cols=103 Identities=23% Similarity=0.234 Sum_probs=58.6
Q ss_pred cccCHHHHHHHhh-CCcEEEecCChhhhhhcc----------CCC--cEeccCcccccchhHHHHHHhhhhccccccccC
Q 027877 51 QPFTPKEAAAAMK-EGFMLLDIRPIWETEKAR----------VKG--SLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTG 117 (217)
Q Consensus 51 ~~is~~e~~~~l~-~~~~lIDvR~~~ey~~gh----------IpG--Ainip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (217)
..++++++..+.+ .=-.|||.|+..|-.... -+| -+++|+..-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~------------------------ 68 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG------------------------ 68 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC------------------------
Confidence 4678888776553 345999999876633210 122 356665410
Q ss_pred CcccCCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHH-HHHcCCcceeeccccHHHHHhCCCCcc
Q 027877 118 QKFTMFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASK-LYEGGYRNLGWLAGGFNRAIEGDFPEI 185 (217)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~-L~~~G~~nv~~l~GG~~~W~~~g~p~~ 185 (217)
..+++-.+.+...+...+++|++||.+|.|+..++.. +...|...-.++ ..-+..|+.++
T Consensus 69 ----~~~~~~v~~f~~~~~~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i~----~~~~~~G~~~~ 129 (135)
T TIGR01244 69 ----DITPDDVETFRAAIGAAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEIV----RRAQAAGYDLS 129 (135)
T ss_pred ----CCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHHH----HHHHHcCCCcc
Confidence 1123333344333323467999999999997776544 344576433333 33456666665
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.03 E-value=0.0038 Score=58.68 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=74.7
Q ss_pred HHHhhcCCCcccCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhccccccccCCccc
Q 027877 42 RQLIQSGAIQPFTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWTGQKFT 121 (217)
Q Consensus 42 ~~~~~~~~~~~is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (217)
.....+..+++|+++++... ....++|.|...||..+|+++++|+|++.-+. -..|+
T Consensus 613 l~~l~se~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea-------~l~~~-------------- 669 (725)
T KOG1093|consen 613 LQQLSSEHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFNNHEA-------DLDWL-------------- 669 (725)
T ss_pred hHHhhhhcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCccchHH-------HHHHh--------------
Confidence 34555678899999998776 66899999999999999999999999972110 00111
Q ss_pred CCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHH
Q 027877 122 MFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W 177 (217)
.+...... ..++.++++......+......+..+-+.++.++.+|+++.
T Consensus 670 ----~~l~~~~~---~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 670 ----RFLPGIVC---SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred ----hcchHhHH---hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 11111111 34566677766666677777777777788899999999844
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.55 E-value=0.14 Score=40.57 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=47.0
Q ss_pred cCCCcccCHHHHHHHhh-CCcEEEecCChhhhhh---ccCCCc--EeccCcccccchhHHHHHHh-----hhhccccccc
Q 027877 47 SGAIQPFTPKEAAAAMK-EGFMLLDIRPIWETEK---ARVKGS--LHVPLFVEDRDYSAITLLKK-----WVHFGYIGLW 115 (217)
Q Consensus 47 ~~~~~~is~~e~~~~l~-~~~~lIDvR~~~ey~~---ghIpGA--inip~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 115 (217)
+.....++.++...+.. .=-.|||.|++.|... -.++|. +|+|+....... +..+-.. .........+
T Consensus 24 S~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Y 102 (164)
T PF13350_consen 24 SGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASS-PDKLAELLQSSADAPRGMLEFY 102 (164)
T ss_dssp ES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH-----------HHHHHHHHHHHH
T ss_pred cCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeeccccccccc-ccccccccccccchhhHHHHHH
Confidence 56677888888776653 3359999999999766 334453 555554332210 0000000 0000000011
Q ss_pred cCCcccCCChhHHHHHHHhCCCCCCeEEEEeCCCc-h-HHHHHHHHHHcCCcc
Q 027877 116 TGQKFTMFNPNFVRQVEAAVPDKESKLLVACGEGL-R-SMMAASKLYEGGYRN 166 (217)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~-r-a~~aa~~L~~~G~~n 166 (217)
.. +.....+...++...+.+...+++++|..|. | ...++..|.-+|...
T Consensus 103 ~~--~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 103 RE--MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp HH--GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HH--HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 00 1112122233333332244479999999998 5 556666777799864
No 66
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.88 E-value=0.1 Score=45.12 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=61.4
Q ss_pred ccCHHHHHHHh-hCCcEEEecCChhhhhhccCCCcEeccCcccccchhHHHHHHhhhhcccc---ccccCCcccCCChhH
Q 027877 52 PFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKGSLHVPLFVEDRDYSAITLLKKWVHFGYI---GLWTGQKFTMFNPNF 127 (217)
Q Consensus 52 ~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGAinip~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 127 (217)
.++++|+.+.+ ..+.+++|+|+ +..||.+|+|+-+-.++ -+.+.-|.. +++++ ...
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalm---------lrrl~~g~l~~ra~~p~-------~~d 64 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALM---------LRRLTGGNLPVRALFPR-------SCD 64 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHH---------HHHHhCCCCcceeccCC-------ccc
Confidence 36788888888 67799999999 56899999998875332 222211111 11111 110
Q ss_pred HHHHHHhCCCCCCeEEEEeCCC--ch----H-H---HHHHHHHHcCCcceeeccccHHHHHhC
Q 027877 128 VRQVEAAVPDKESKLLVACGEG--LR----S-M---MAASKLYEGGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G--~r----a-~---~aa~~L~~~G~~nv~~l~GG~~~W~~~ 180 (217)
........ +...+|+|+.+. +. + . ..-..++..|+ .+++|.|||..++.+
T Consensus 65 ~~~~~~~c--~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 65 DKRFPARC--GTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred cccccccC--CcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 00111111 235788888762 11 1 1 11244666787 699999999888644
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=93.70 E-value=0.011 Score=52.18 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=33.8
Q ss_pred cCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCcc
Q 027877 53 FTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLFV 92 (217)
Q Consensus 53 is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~~ 92 (217)
-+++++.+.+.....++|+|.+..|+.+||||++|+|...
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~ 55 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQ 55 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHH
Confidence 4567777777556789999999999999999999999853
No 68
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=90.15 E-value=0.59 Score=43.25 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=30.4
Q ss_pred ccCHHHHHHHh-----hCCcEEEecCChhhhhhccCCCcEeccCc
Q 027877 52 PFTPKEAAAAM-----KEGFMLLDIRPIWETEKARVKGSLHVPLF 91 (217)
Q Consensus 52 ~is~~e~~~~l-----~~~~~lIDvR~~~ey~~ghIpGAinip~~ 91 (217)
.|++-|+.+.- .-++.+||+|+.++|..||+..|.|.+-.
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~ 352 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCV 352 (669)
T ss_pred chhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHH
Confidence 45555554432 23589999999999999999999998764
No 69
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.97 E-value=2.3 Score=32.51 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCcccCHHHHHHHh-hCCcEEEecCChhhhhhccCCC--------------cEeccCcccccchhHHHHHHhhhhccccc
Q 027877 49 AIQPFTPKEAAAAM-KEGFMLLDIRPIWETEKARVKG--------------SLHVPLFVEDRDYSAITLLKKWVHFGYIG 113 (217)
Q Consensus 49 ~~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~ghIpG--------------Ainip~~~~~~~~~~~~~~~~~~~~~~~~ 113 (217)
....++++++.+.. ..-..||--|+..|=. .=|+ ..+||...
T Consensus 12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~--~QP~~~~i~~aa~~aGl~y~~iPV~~--------------------- 68 (130)
T COG3453 12 VSGQISPADIASIAALGFKSIICNRPDGEEP--GQPGFAAIAAAAEAAGLTYTHIPVTG--------------------- 68 (130)
T ss_pred ecCCCCHHHHHHHHHhccceecccCCCCCCC--CCCChHHHHHHHHhcCCceEEeecCC---------------------
Confidence 34568888888877 3445888999865421 1111 33444431
Q ss_pred cccCCcccCCChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHH
Q 027877 114 LWTGQKFTMFNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASK 158 (217)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~ 158 (217)
....++-++.+.+.+...+.+|+.||++|.||...+..
T Consensus 69 -------~~iT~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 69 -------GGITEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred -------CCCCHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHH
Confidence 12233333333333324577999999999998776654
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=88.97 E-value=1.1 Score=33.79 Aligned_cols=28 Identities=36% Similarity=0.460 Sum_probs=18.8
Q ss_pred CCCCeEEEEeCCCc-hHHH--HHHHHHHcCC
Q 027877 137 DKESKLLVACGEGL-RSMM--AASKLYEGGY 164 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~~--aa~~L~~~G~ 164 (217)
..+++|+++|..|. ||.. +++.++..|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 45679999999887 7653 3444555554
No 71
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=85.71 E-value=0.61 Score=35.58 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=29.7
Q ss_pred EEEEeCCCc-hHHHHHHHHHHc----CCcceeeccccHHHH
Q 027877 142 LLVACGEGL-RSMMAASKLYEG----GYRNLGWLAGGFNRA 177 (217)
Q Consensus 142 IvlyC~~G~-ra~~aa~~L~~~----G~~nv~~l~GG~~~W 177 (217)
|+|.|.++. ||.+|...|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 688998866 999999998887 666888888888755
No 72
>PLN02727 NAD kinase
Probab=81.87 E-value=6.7 Score=39.65 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=50.0
Q ss_pred CcccCHHHHHHHhhCC-cEEEecCChhhhhhccC------------CCcEeccCcccccchhHHHHHHhhhhcccccccc
Q 027877 50 IQPFTPKEAAAAMKEG-FMLLDIRPIWETEKARV------------KGSLHVPLFVEDRDYSAITLLKKWVHFGYIGLWT 116 (217)
Q Consensus 50 ~~~is~~e~~~~l~~~-~~lIDvR~~~ey~~ghI------------pGAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (217)
...++++++.++.+.+ -.||+.|+..|- .+.. -..+|+|+..-
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~----------------------- 321 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVR----------------------- 321 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCC-----------------------
Confidence 4578999998776445 499999997661 1111 12466776311
Q ss_pred CCcccCCChhHHHHHHHhC-CCCCCeEEEEeCCCc-hH-HHHHHHHH
Q 027877 117 GQKFTMFNPNFVRQVEAAV-PDKESKLLVACGEGL-RS-MMAASKLY 160 (217)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~~~~~~IvlyC~~G~-ra-~~aa~~L~ 160 (217)
....++.++++.+.+ ....++|++||.+|. |+ .+++.++.
T Consensus 322 ----~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 322 ----TAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred ----CCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHH
Confidence 112345555555554 235789999999998 43 34444443
No 73
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=81.48 E-value=6.2 Score=29.73 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCCCeEEEEeCCCc-hHHH--HHHHHHHcCCc
Q 027877 137 DKESKLLVACGEGL-RSMM--AASKLYEGGYR 165 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~~--aa~~L~~~G~~ 165 (217)
..+++|+++|..|. ||.. +++.+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 66789999999986 6553 44556667763
No 74
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=79.17 E-value=2 Score=32.76 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=27.6
Q ss_pred EEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHH
Q 027877 142 LLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 142 IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W 177 (217)
|+|+|.+.. ||.+|...|++..-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578897765 999999999886534677788888755
No 75
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=78.83 E-value=3.3 Score=36.63 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=28.3
Q ss_pred CcccCHHHHHHHh-hCCcEEEecCChhhhhh---ccCC
Q 027877 50 IQPFTPKEAAAAM-KEGFMLLDIRPIWETEK---ARVK 83 (217)
Q Consensus 50 ~~~is~~e~~~~l-~~~~~lIDvR~~~ey~~---ghIp 83 (217)
...+...++.+.+ ..+..|||+|+..+|.+ |||+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 3556778888887 66789999999999998 8888
No 76
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=78.20 E-value=4.9 Score=33.39 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=28.6
Q ss_pred HHHHHhCCCC-CCeEEEEeCCCc---hHHHHHHHHHHcCCcceee
Q 027877 129 RQVEAAVPDK-ESKLLVACGEGL---RSMMAASKLYEGGYRNLGW 169 (217)
Q Consensus 129 ~~~~~~~~~~-~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~ 169 (217)
+.+.+..+.. ..+|+++|..|+ -+..+|.+|...|+ .|.+
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~-~V~v 81 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGY-AVTV 81 (203)
T ss_pred HHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCC-ceEE
Confidence 3444555322 678999998766 57899999999997 4443
No 77
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=76.13 E-value=4 Score=30.83 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=32.3
Q ss_pred CeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccH----------HHHHhCCCCcc
Q 027877 140 SKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGF----------NRAIEGDFPEI 185 (217)
Q Consensus 140 ~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~----------~~W~~~g~p~~ 185 (217)
++|+|.|.+.. ||.+|...|+.++-.++.+...|. ...++.|+++.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 36889997765 899999999887655666666665 34455566653
No 78
>PRK10126 tyrosine phosphatase; Provisional
Probab=74.59 E-value=3.7 Score=31.89 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=28.6
Q ss_pred CeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHH
Q 027877 140 SKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 140 ~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W 177 (217)
.+|+|+|.+.. ||.+|...|+..+ .++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCC
Confidence 47999998766 9999999999876 3466667777554
No 79
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=72.92 E-value=4.8 Score=31.31 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=28.4
Q ss_pred CeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHHHH
Q 027877 140 SKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 140 ~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~~W 177 (217)
++|+|+|.+.. ||.+|...|+... .++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCC
Confidence 47999998765 9999999998865 2566677777655
No 80
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=72.88 E-value=4.4 Score=32.68 Aligned_cols=35 Identities=37% Similarity=0.638 Sum_probs=21.0
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCc-hH-HHHHHHHHHcC
Q 027877 128 VRQVEAAVPDKESKLLVACGEGL-RS-MMAASKLYEGG 163 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~-ra-~~aa~~L~~~G 163 (217)
..++.+.+ ..+++|+++|.+|. |+ ..|+..|.++|
T Consensus 123 ~~eL~~~L-~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 123 LEELAARL-ENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHH-HTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHH-HcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 34444444 66789999999987 65 45667777766
No 81
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=72.43 E-value=7.6 Score=31.25 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=19.3
Q ss_pred CCCCeEEEEeCCCc-hHH--HHHHHHHHcCCc
Q 027877 137 DKESKLLVACGEGL-RSM--MAASKLYEGGYR 165 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~--~aa~~L~~~G~~ 165 (217)
...++|+++|..|. ||. .+|+.|...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 56679999999987 643 344555554543
No 82
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=69.79 E-value=9.7 Score=31.40 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCCeEEEEeCCCc---hHHHHHHHHHHcCCcceeec
Q 027877 137 DKESKLLVACGEGL---RSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 137 ~~~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~l 170 (217)
...++|+++|..|+ .+..++++|...|+ .|+.+
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 44578999997665 67889999988776 56654
No 83
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=67.93 E-value=9.3 Score=35.69 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCcceeecc-cc---------HHHHHhCCCCc
Q 027877 139 ESKLLVACGEGL---RSMMAASKLYEGGYRNLGWLA-GG---------FNRAIEGDFPE 184 (217)
Q Consensus 139 ~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~l~-GG---------~~~W~~~g~p~ 184 (217)
.++|+++|..|+ .+..+|.+|...|| +|.++- +. +..|...|.++
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGY-KPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCC-ceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 368999998776 57789999999999 454431 21 34566666554
No 84
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=67.92 E-value=9.6 Score=36.37 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=31.3
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCcceeecc-----cc-----HHHHHhCCCCc
Q 027877 139 ESKLLVACGEGL---RSMMAASKLYEGGYRNLGWLA-----GG-----FNRAIEGDFPE 184 (217)
Q Consensus 139 ~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~l~-----GG-----~~~W~~~g~p~ 184 (217)
.++|+|+|..|+ .+..+|.+|...|| +|.++- .. +..|...|.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~-~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGY-KPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCC-ceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 368999998776 56789999999999 455432 12 34566667654
No 85
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=67.27 E-value=9.1 Score=30.47 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCCeEEEEeCCCc---hHHHHHHHHHHcCCcceee--ccc----------cHHHHHhCCCCcccC
Q 027877 137 DKESKLLVACGEGL---RSMMAASKLYEGGYRNLGW--LAG----------GFNRAIEGDFPEIEG 187 (217)
Q Consensus 137 ~~~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~--l~G----------G~~~W~~~g~p~~~~ 187 (217)
...++|+++|..|. .+..++++|...|++ |.+ +.. -++.+++.|.++...
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 66789999998876 577899999999994 554 321 134566777776654
No 86
>PRK13530 arsenate reductase; Provisional
Probab=66.95 E-value=8.7 Score=29.38 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=27.2
Q ss_pred CCeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccH
Q 027877 139 ESKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 139 ~~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
.++|+|.|.+.. ||.+|..+++.+.-.++.+...|.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 357999997766 999999999875434676777776
No 87
>PRK10565 putative carbohydrate kinase; Provisional
Probab=66.77 E-value=10 Score=35.77 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=24.9
Q ss_pred CCCCeEEEEeCCCc---hHHHHHHHHHHcCCcceeec
Q 027877 137 DKESKLLVACGEGL---RSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 137 ~~~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~l 170 (217)
...++|+++|..|+ .+..++++|...|| +|.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~-~V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGI-DVTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCC-ceEEE
Confidence 34567999997665 57889999999999 55433
No 88
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=66.03 E-value=7.8 Score=30.54 Aligned_cols=41 Identities=24% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCCeEEEEe-CC----CchHHHHHHHHHHcCCcceeeccccHHHH
Q 027877 137 DKESKLLVAC-GE----GLRSMMAASKLYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 137 ~~~~~IvlyC-~~----G~ra~~aa~~L~~~G~~nv~~l~GG~~~W 177 (217)
+++.++++++ ++ |..-..++..|+++|..+...||||-..-
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 4555666665 42 55677888899999999999999987654
No 89
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=65.89 E-value=17 Score=30.73 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=30.5
Q ss_pred hhHHHHHHHhCC--CCCCeEEEEeCCCchHHHHH-----HHHHHcCCcceee
Q 027877 125 PNFVRQVEAAVP--DKESKLLVACGEGLRSMMAA-----SKLYEGGYRNLGW 169 (217)
Q Consensus 125 ~~~~~~~~~~~~--~~~~~IvlyC~~G~ra~~aa-----~~L~~~G~~nv~~ 169 (217)
+.+++.++...+ .++..+|++|.+......++ ..|...||+||++
T Consensus 121 e~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 121 EICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 456777777775 46778999998765332222 3477889988774
No 90
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=64.87 E-value=7.7 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=28.5
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCc-ceeeccccHHHH
Q 027877 141 KLLVACGEGL-RSMMAASKLYEGGYR-NLGWLAGGFNRA 177 (217)
Q Consensus 141 ~IvlyC~~G~-ra~~aa~~L~~~G~~-nv~~l~GG~~~W 177 (217)
+|+|.|.+.. ||.+|...+++..-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6899997765 999999999886543 677788887544
No 91
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=63.31 E-value=11 Score=32.06 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCcceeec
Q 027877 139 ESKLLVACGEGL---RSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 139 ~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~l 170 (217)
.++|+++|..|+ .+..+|++|...|| +|.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 368999997665 67899999999999 55544
No 92
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=61.89 E-value=10 Score=29.40 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=29.0
Q ss_pred CeEEEEeCCCc-hHHHHHHHHHHcCCcceeeccccHH
Q 027877 140 SKLLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 140 ~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
.+|+|+|.+.. ||.+|-..+++..-.++.+...|..
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~ 39 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTG 39 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccC
Confidence 47999998766 9999999999864468888888853
No 93
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=57.70 E-value=12 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=21.6
Q ss_pred EEEEeCCCc-hHHHHHHHHHHcCCcceeeccccH
Q 027877 142 LLVACGEGL-RSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 142 IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
|+|.|.+.. ||.+|..+++.+.=.++.+...|+
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~ 34 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGI 34 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 467776654 777777777765324566666665
No 94
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=55.81 E-value=32 Score=25.66 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=31.1
Q ss_pred CCCCeEEEEeCCCc----hHHHHHHHHHHcCCcceeecccc------HHHHHhCCC
Q 027877 137 DKESKLLVACGEGL----RSMMAASKLYEGGYRNLGWLAGG------FNRAIEGDF 182 (217)
Q Consensus 137 ~~~~~IvlyC~~G~----ra~~aa~~L~~~G~~nv~~l~GG------~~~W~~~g~ 182 (217)
..+.++|++|..-. ........|++.|+.++.++.|| +..|++.|+
T Consensus 48 ~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 48 QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 34557888885432 34455677888999888888886 244666774
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=55.12 E-value=68 Score=27.66 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=41.2
Q ss_pred ChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHH
Q 027877 124 NPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~ 178 (217)
+.+.++.+...+ .++..+++||..-.........|++.||.++...+==...|.
T Consensus 174 PW~~le~~~~~L-kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~ 227 (256)
T COG2519 174 PWNVLEHVSDAL-KPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWE 227 (256)
T ss_pred hHHHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheee
Confidence 346777777777 777999999999889999999999999987665443234453
No 96
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=53.25 E-value=29 Score=29.60 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=21.3
Q ss_pred CCCCeEEEEeCCCc-hH-HHHHHHHHHcCCc
Q 027877 137 DKESKLLVACGEGL-RS-MMAASKLYEGGYR 165 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra-~~aa~~L~~~G~~ 165 (217)
..+..|+|+|..|. |+ ..++..|.+.|++
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 46778999999886 54 4566667677874
No 97
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=53.12 E-value=25 Score=26.07 Aligned_cols=28 Identities=39% Similarity=0.549 Sum_probs=19.1
Q ss_pred CCCCeEEEEeCCCc-hHHH--HHHHHHHcCC
Q 027877 137 DKESKLLVACGEGL-RSMM--AASKLYEGGY 164 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~~--aa~~L~~~G~ 164 (217)
..+.+|+|+|..|. ||.. ++..+...|+
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 56789999999987 6543 3344544665
No 98
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.66 E-value=33 Score=28.66 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=34.7
Q ss_pred CChhHHHHHHHhCC-CCCCeEEEE-eCCCchHHH--------------------HHHHHHHcCCcceeeccc-cHHHHHh
Q 027877 123 FNPNFVRQVEAAVP-DKESKLLVA-CGEGLRSMM--------------------AASKLYEGGYRNLGWLAG-GFNRAIE 179 (217)
Q Consensus 123 ~~~~~~~~~~~~~~-~~~~~Ivly-C~~G~ra~~--------------------aa~~L~~~G~~nv~~l~G-G~~~W~~ 179 (217)
..+...+.+.+.+. .+..+|+-. |.+|..+.. |-..|+.+||.||.+..| |..+|..
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 34555555555432 444555533 566654433 334588999999876665 8888865
Q ss_pred C
Q 027877 180 G 180 (217)
Q Consensus 180 ~ 180 (217)
.
T Consensus 136 ~ 136 (209)
T COG2518 136 E 136 (209)
T ss_pred C
Confidence 3
No 99
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=52.64 E-value=3.5 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHhCCCCcccCCccccccccCchHHHHHHHHHHHHHh
Q 027877 177 AIEGDFPEIEGKEKLQYATIGGVSYYFLRLLLLLQAV 213 (217)
Q Consensus 177 W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (217)
|....-+.++.+.....++.+|++|.+-|.+-+||.+
T Consensus 3 ~~~~~~~~~t~e~~~~~va~~G~gY~iYR~vRmlPSL 39 (54)
T PF15654_consen 3 PPNPNTPVSTAETAAKIVAGVGAGYLIYRGVRMLPSL 39 (54)
T ss_pred CCCCCCcchHHHHhhhheeecchhhhhhhHHhhcccc
Confidence 4444455666677778889999999999988887754
No 100
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.18 E-value=36 Score=26.06 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=36.0
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCc----hHHHHHHHHHHcCCcceeecccc------HHHHHhCCC
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGL----RSMMAASKLYEGGYRNLGWLAGG------FNRAIEGDF 182 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~----ra~~aa~~L~~~G~~nv~~l~GG------~~~W~~~g~ 182 (217)
+++.+... ..+.++|++|..-. ........|++.|..++.++.|| +..|++.|.
T Consensus 43 e~~v~aa~----e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 43 EEIARQAV----EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HHHHHHHH----HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 35554443 45667899986422 34567777999998788888897 345566664
No 101
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=48.58 E-value=27 Score=33.38 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
-+.+||++.+.-..+...|..|.++|| +++.|.||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 377899999998889999999999999 899999985
No 102
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.48 E-value=27 Score=25.12 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=25.8
Q ss_pred CCeEEEEeCCCchHHHHHHH----HHHcCCcceeeccccHHHH
Q 027877 139 ESKLLVACGEGLRSMMAASK----LYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 139 ~~~IvlyC~~G~ra~~aa~~----L~~~G~~nv~~l~GG~~~W 177 (217)
.++|++.|.+|..+..++.. +++.|+ ++.+-..++...
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi-~~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGV-PVKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCC-cEEEEEecHHHH
Confidence 46899999999866555544 566787 455555566554
No 103
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.05 E-value=64 Score=25.32 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCCCeEEEEeCC-C-c--hHHHHHHHHHHcCCcceeeccccH
Q 027877 137 DKESKLLVACGE-G-L--RSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 137 ~~~~~IvlyC~~-G-~--ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
..+..+|..|.- | . -...+...|++.|..++.++.||.
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 567788888842 2 2 356778889999999999888886
No 104
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=44.75 E-value=32 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.2
Q ss_pred CCeEEEEeCCCc-hHHH
Q 027877 139 ESKLLVACGEGL-RSMM 154 (217)
Q Consensus 139 ~~~IvlyC~~G~-ra~~ 154 (217)
..+|++.|..|. |+..
T Consensus 39 ~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 39 SGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCEEEEeCCCCChhhH
Confidence 579999998876 6543
No 105
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=44.75 E-value=32 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=12.2
Q ss_pred CCeEEEEeCCCc-hHHH
Q 027877 139 ESKLLVACGEGL-RSMM 154 (217)
Q Consensus 139 ~~~IvlyC~~G~-ra~~ 154 (217)
..+|++.|..|. |+..
T Consensus 39 ~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 39 SGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCEEEEeCCCCChhhH
Confidence 579999998876 6543
No 106
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=44.17 E-value=32 Score=23.73 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=17.0
Q ss_pred eEEEEeCCCchHH-HHHH----HHHHcCCc
Q 027877 141 KLLVACGEGLRSM-MAAS----KLYEGGYR 165 (217)
Q Consensus 141 ~IvlyC~~G~ra~-~aa~----~L~~~G~~ 165 (217)
+|++.|.+|..+. .++. .+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999998544 4434 46678874
No 107
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=44.04 E-value=66 Score=22.96 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=24.0
Q ss_pred eEEEEeCCCc-hHHHHHH----HHHHcCCcceeeccccHHHHH
Q 027877 141 KLLVACGEGL-RSMMAAS----KLYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 141 ~IvlyC~~G~-ra~~aa~----~L~~~G~~nv~~l~GG~~~W~ 178 (217)
+|++.|.+|. .|..++. .|.+.|+ ++.+....+....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi-~~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNI-PVELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCC-eEEEEEecHHHHh
Confidence 6999999998 4444444 4667888 4555555555553
No 108
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=44.00 E-value=35 Score=28.14 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=23.9
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCcceeec
Q 027877 141 KLLVACGEGL-RSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 141 ~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l 170 (217)
++-+.|.+.. ||..|-..|++.|| +|..+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 5678898876 99999999999999 78766
No 109
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=43.66 E-value=30 Score=31.56 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=37.8
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHHhC
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~~~ 180 (217)
.++.+++.+.. +....-+++|++|..|..++..|.. .|-++|..++|+|-+|...
T Consensus 89 ~~la~~L~~~~-~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~ 145 (433)
T PRK08117 89 LKLAEELAEIT-PGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLG 145 (433)
T ss_pred HHHHHHHHHhC-CCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHH
Confidence 45666666655 3334567899999988877776644 3555788888988887543
No 110
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.60 E-value=30 Score=25.27 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=25.9
Q ss_pred eEEEEeCCCchHHHHHHH----HHHcCCcceeeccccHHHHH
Q 027877 141 KLLVACGEGLRSMMAASK----LYEGGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 141 ~IvlyC~~G~ra~~aa~~----L~~~G~~nv~~l~GG~~~W~ 178 (217)
+|++.|.+|..|..++.. +++.|+ ++.+-..+.....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~~ 42 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSHY 42 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHHH
Confidence 588999999877766655 556788 5666666666543
No 111
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=43.39 E-value=61 Score=23.17 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
+.+.++++||..-.........|.+.+. ++..+.|++
T Consensus 26 ~~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 26 KKGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 3567899999997788888888888766 688888875
No 112
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=42.54 E-value=35 Score=23.78 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=21.3
Q ss_pred CeEEEEeCCCch-HHHHHH----HHHHcCCcceeeccccHHHH
Q 027877 140 SKLLVACGEGLR-SMMAAS----KLYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 140 ~~IvlyC~~G~r-a~~aa~----~L~~~G~~nv~~l~GG~~~W 177 (217)
++|+++|.+|.. |..+.. .+.+.|.. +.+-..++..+
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 368999999984 444343 35556653 33333445444
No 113
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=42.14 E-value=60 Score=25.74 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=18.3
Q ss_pred CCCCeEEEEeCCCc-hHHH-HHHHHHHcC
Q 027877 137 DKESKLLVACGEGL-RSMM-AASKLYEGG 163 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~~-aa~~L~~~G 163 (217)
..+.+|+|+|..|. ||.. ++..|.+.|
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 45789999999886 6544 445555544
No 114
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.49 E-value=34 Score=25.19 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=24.4
Q ss_pred CeEEEEeCCCchHHHHHHH----HHHcCCcceeeccccHHHH
Q 027877 140 SKLLVACGEGLRSMMAASK----LYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 140 ~~IvlyC~~G~ra~~aa~~----L~~~G~~nv~~l~GG~~~W 177 (217)
++|++.|.+|..+..++.. +++.|+ ++.+-..+....
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi-~~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGK-DIEVDAITATEG 42 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCC-ceEEEEecHHHH
Confidence 3689999999866665554 556787 455544555444
No 115
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=41.20 E-value=44 Score=30.94 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=34.5
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc-----CCcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG-----GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~-----G~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+.. +.+-..++||++|..|..+|..|... |-..|....|+|-+|.
T Consensus 121 ~lAe~L~~~~-p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 121 LLAKTLAALT-PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHHHhC-CCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 4556665555 33335678899999887777665542 5446778888887664
No 116
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=40.65 E-value=51 Score=23.76 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=25.8
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchH-HHHHHHHHHcCCc
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRS-MMAASKLYEGGYR 165 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra-~~aa~~L~~~G~~ 165 (217)
++++.+. ..++++++..+++.++ ...+..|+.+|+.
T Consensus 21 e~l~~L~----~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALR----ERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHH----HTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHH----HcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 5555554 4568999999988765 6788889999995
No 117
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=40.53 E-value=21 Score=31.84 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=31.8
Q ss_pred CCCcccCHHHHHHHh-------hCCcEEEecCChhhhhhccCCCcEec
Q 027877 48 GAIQPFTPKEAAAAM-------KEGFMLLDIRPIWETEKARVKGSLHV 88 (217)
Q Consensus 48 ~~~~~is~~e~~~~l-------~~~~~lIDvR~~~ey~~ghIpGAini 88 (217)
.....++++++.+.+ +.+..+||+|.+. |+..++|+..-+
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~ 320 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVL 320 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEE
Confidence 455789999998877 3578999999988 999999865433
No 118
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=40.36 E-value=54 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHhCCCCCCeEEEEeCCCc--hHHHHHHHHHH---cCCcceeeccccHHHH
Q 027877 130 QVEAAVPDKESKLLVACGEGL--RSMMAASKLYE---GGYRNLGWLAGGFNRA 177 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~--ra~~aa~~L~~---~G~~nv~~l~GG~~~W 177 (217)
.+...+ +++..+|+.+..|. .|...|..|.. .|..++..+.||-.++
T Consensus 59 ~il~~i-~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKI-PPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTS-HTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhc-cCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 444444 67778888888886 57777777665 6888999999986444
No 119
>PRK07481 hypothetical protein; Provisional
Probab=39.68 E-value=47 Score=30.66 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=36.9
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--------CCcceeeccccHHHHHhC
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--------GYRNLGWLAGGFNRAIEG 180 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--------G~~nv~~l~GG~~~W~~~ 180 (217)
.++.+.+.+..+..+-.-++||++|..|..+|..|... |-.+|..+.|||-+|...
T Consensus 89 ~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~g 152 (449)
T PRK07481 89 IELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFG 152 (449)
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchh
Confidence 35666666655323334678899999887777665542 334588889999888643
No 120
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=39.02 E-value=58 Score=29.97 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=37.9
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHHhCC
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAIEGD 181 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~~~g 181 (217)
.++.+.+.+..+.....-++||++|..|..+|..|.. -|-..|..+.|||-+|....
T Consensus 100 ~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ 158 (451)
T PRK06918 100 IELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMT 158 (451)
T ss_pred HHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhh
Confidence 4566666666532222367999999988887777654 24446778888888776433
No 121
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=39.01 E-value=53 Score=28.83 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=35.0
Q ss_pred HHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCc-ceeeccccH
Q 027877 128 VRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYR-NLGWLAGGF 174 (217)
Q Consensus 128 ~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~-nv~~l~GG~ 174 (217)
...+.... ..+.+++++|++-..+...+..|++.+.. ++..+.|++
T Consensus 212 l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 212 LERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 33343333 45678999999977888899999998874 688888886
No 122
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=38.91 E-value=44 Score=24.54 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=18.6
Q ss_pred CeEEEEeCCCchHHHHHHH----HHHcCCc
Q 027877 140 SKLLVACGEGLRSMMAASK----LYEGGYR 165 (217)
Q Consensus 140 ~~IvlyC~~G~ra~~aa~~----L~~~G~~ 165 (217)
++|++.|.+|..+...+.. .++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 4799999999977666633 3456663
No 123
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.78 E-value=39 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=24.1
Q ss_pred eEEEEeCCCchHHHHHHH----HHHcCCcceeeccccHHHH
Q 027877 141 KLLVACGEGLRSMMAASK----LYEGGYRNLGWLAGGFNRA 177 (217)
Q Consensus 141 ~IvlyC~~G~ra~~aa~~----L~~~G~~nv~~l~GG~~~W 177 (217)
+|++.|.+|..+..++.. +++.|+ ++.+-..++..-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~-~~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGI-DAEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCC-ceEEEEecHHHH
Confidence 488999999866655554 556787 455555566554
No 124
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=37.56 E-value=65 Score=31.03 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=48.3
Q ss_pred CChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHHHHHhCCCC----ccc-CCc----cccc
Q 027877 123 FNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFP----EIE-GKE----KLQY 193 (217)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p----~~~-~~~----~~~~ 193 (217)
++++.++++.+ .+..+|+.|+.|..+......++++|+ +|.+.|==. .....| +.. ... +.+.
T Consensus 115 l~~~~i~~~~~----~~~~LiItvD~Gi~~~e~i~~a~~~gi-dvIVtDHH~---~~~~~P~a~a~iNP~~~~~~yp~~~ 186 (575)
T PRK11070 115 LSPEVVDQAHA----RGAQLIVTVDNGISSHAGVAHAHALGI-PVLVTDHHL---PGETLPAADAIINPNLRDCNFPSKS 186 (575)
T ss_pred CCHHHHHHHHh----cCCCEEEEEcCCcCCHHHHHHHHHCCC-CEEEECCCC---CCCCCCCCeEEECCCCcCCCCCCCc
Confidence 45555555543 345699999999999999999999998 566554100 011122 111 111 3344
Q ss_pred cccCchHHHHHHHHH
Q 027877 194 ATIGGVSYYFLRLLL 208 (217)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (217)
...+|++|++.+++.
T Consensus 187 L~g~Gvaf~l~~al~ 201 (575)
T PRK11070 187 LAGVGVAFYLMLALR 201 (575)
T ss_pred chHHHHHHHHHHHHH
Confidence 566679999988774
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=36.33 E-value=54 Score=31.96 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=37.2
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
.+.+.+.... ..+.+++++|++-.++...+..|...|+ ++..+.|++.
T Consensus 434 ~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCC
Confidence 4555555544 5677899999998899999999999998 6777777654
No 126
>PRK06917 hypothetical protein; Provisional
Probab=35.72 E-value=66 Score=29.68 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=35.7
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-----cCC---cceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-----GGY---RNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-----~G~---~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.....++||++|..|..+|..|.. .|+ +.|..++|||-+|.
T Consensus 77 ~~lae~L~~~~-p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 77 EKLAKKLSDLS-PGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHHHHHHHhC-CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 35666666655 3333468899999988887776653 344 35778888887775
No 127
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=35.62 E-value=2.2e+02 Score=25.00 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=46.5
Q ss_pred CCCCeEEEEeCCCc--hHHHHHHHHHHcCCcceeecccc-HHHHHhC-CCCcccCCccccccccCchHHHHHHHHHHHHH
Q 027877 137 DKESKLLVACGEGL--RSMMAASKLYEGGYRNLGWLAGG-FNRAIEG-DFPEIEGKEKLQYATIGGVSYYFLRLLLLLQA 212 (217)
Q Consensus 137 ~~~~~IvlyC~~G~--ra~~aa~~L~~~G~~nv~~l~GG-~~~W~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (217)
++++-+|+.+.+|. ....++..+++.|.+=|.+-.+| +..+.+. +.++..-+... ..---..|+++.++.++..
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip~~~--~~r~s~~~ll~~l~~~l~~ 154 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVPGGY--QPRAALGYLFTPLLKILEK 154 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeCCCC--cchhhHHHHHHHHHHHHHH
Confidence 55556667777776 45677888999998433343433 3444332 55554433222 1112367888899999988
Q ss_pred hcC
Q 027877 213 VGK 215 (217)
Q Consensus 213 ~~~ 215 (217)
+|-
T Consensus 155 ~Gl 157 (337)
T PRK08674 155 LGL 157 (337)
T ss_pred cCC
Confidence 874
No 128
>PTZ00110 helicase; Provisional
Probab=34.43 E-value=79 Score=30.03 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
....++||||++-..+...+..|+..|+ .+..+.|++
T Consensus 375 ~~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~ 411 (545)
T PTZ00110 375 RDGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDK 411 (545)
T ss_pred ccCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCC
Confidence 3667999999998888999999999998 566677775
No 129
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=34.40 E-value=93 Score=22.72 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=19.3
Q ss_pred CCCCeEEEEeCCCch--HHHHHHHHHHcCCcceeeccc
Q 027877 137 DKESKLLVACGEGLR--SMMAASKLYEGGYRNLGWLAG 172 (217)
Q Consensus 137 ~~~~~IvlyC~~G~r--a~~aa~~L~~~G~~nv~~l~G 172 (217)
+.+..|+++|+-+.. ...++..+ ..+++++++.|
T Consensus 55 ~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 55 DEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp CTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred cCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 567788888875443 33333333 34445666554
No 130
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=34.05 E-value=42 Score=26.70 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=23.3
Q ss_pred hhHHHHHHHh-CCCCCCeEEEEeCCCc-hHHHHHHHHHH-cCC
Q 027877 125 PNFVRQVEAA-VPDKESKLLVACGEGL-RSMMAASKLYE-GGY 164 (217)
Q Consensus 125 ~~~~~~~~~~-~~~~~~~IvlyC~~G~-ra~~aa~~L~~-~G~ 164 (217)
++.+.+..+. +....-+|+++|..|. |...+...|++ .|+
T Consensus 76 ~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W 118 (164)
T PF03162_consen 76 EEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGW 118 (164)
T ss_dssp HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCC
Confidence 4444444443 2235679999999887 77666666665 455
No 131
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=33.91 E-value=73 Score=28.95 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=35.3
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+..+..-++||++|..+..+|..|.. -|-+.|....|||-+|.
T Consensus 79 ~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 79 VALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 3566666665532333457889999988887777654 35446777788886653
No 132
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=33.72 E-value=68 Score=29.56 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=36.1
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+.....-|+||++|..+..+|..|.. -|-+.|..++|||-+|.
T Consensus 88 ~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 88 VRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred HHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 3566666665532222467889999988887777644 35456788889887775
No 133
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=33.33 E-value=72 Score=31.24 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
.+.+.+.... ..+.+++++|.+-.++...+..|...|+ ++..+.|++.
T Consensus 430 ~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCCC
Confidence 4556665555 6677899999998889999999999998 6777777654
No 134
>PRK06148 hypothetical protein; Provisional
Probab=33.02 E-value=64 Score=33.24 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=38.5
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--CCcceeeccccHHHHHh
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--GYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--G~~nv~~l~GG~~~W~~ 179 (217)
.++.+.+.+.. +.+-..+++|++|..|..+|..|... |-++|..++|||-+|..
T Consensus 666 ~~lAe~L~~~~-p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 666 VAYAERLTATL-PDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 35666666655 33335789999999888877776653 55578888999988864
No 135
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=32.90 E-value=45 Score=21.95 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=14.5
Q ss_pred eEEEEeCCCc-hHHHHHHHHHH
Q 027877 141 KLLVACGEGL-RSMMAASKLYE 161 (217)
Q Consensus 141 ~IvlyC~~G~-ra~~aa~~L~~ 161 (217)
++++.|.+|. .+..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 4789999985 56666655544
No 136
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=32.81 E-value=52 Score=31.84 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH---------HHHHhCCCCc
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF---------NRAIEGDFPE 184 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~---------~~W~~~g~p~ 184 (217)
..+..-|+||.+-..+-..+.+|...|+ ++..|.||+ ++|.....++
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~~~eR~~~q~~f~~~~~~i 283 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLSNEERERVQQAFLNDEIKV 283 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCCHHHHHHHHHHHhcCCCcE
Confidence 4456679999998888999999999998 788888988 4666555554
No 137
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=32.65 E-value=56 Score=26.47 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=10.3
Q ss_pred CCCchHHHHHHHHHHcCC
Q 027877 147 GEGLRSMMAASKLYEGGY 164 (217)
Q Consensus 147 ~~G~ra~~aa~~L~~~G~ 164 (217)
.+|..|..+|+.|.++||
T Consensus 8 SGGKDSSLaA~iL~klgy 25 (198)
T COG2117 8 SGGKDSSLAALILDKLGY 25 (198)
T ss_pred cCCCchhHHHHHHHHhCC
Confidence 344555566666666666
No 138
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=32.38 E-value=75 Score=23.53 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=24.5
Q ss_pred hHHHHHHHhCC--CCCCeEEEEeC--CCchHHHHHHHHHHcCCcceeeccc
Q 027877 126 NFVRQVEAAVP--DKESKLLVACG--EGLRSMMAASKLYEGGYRNLGWLAG 172 (217)
Q Consensus 126 ~~~~~~~~~~~--~~~~~IvlyC~--~G~ra~~aa~~L~~~G~~nv~~l~G 172 (217)
++.+++.+.+. +.+..|++.++ +|.-...+...+.+ +++++++.|
T Consensus 43 ~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 43 TLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 44444433321 44566777775 46665555555533 457776655
No 139
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.94 E-value=92 Score=28.21 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=30.7
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
...++++||++-..+...+..|...|+ ++..+.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 356899999998888889999999998 788888876
No 140
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=31.42 E-value=80 Score=29.27 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=36.4
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc-----CC---cceeeccccHHHHHh
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG-----GY---RNLGWLAGGFNRAIE 179 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~-----G~---~nv~~l~GG~~~W~~ 179 (217)
.++.+.+.+.. +..-.-++||++|..+..+|..|... |+ ++|..+.|||-+|..
T Consensus 102 ~~lae~L~~~~-p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 102 ILLAEKLIEVV-PEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred HHHHHHHHHhC-CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccH
Confidence 35666666655 33324689999999888777766553 43 357788888877754
No 141
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=31.35 E-value=97 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
...++++||++-..+...+..|...|+ ++..+.|++
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~ 279 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEM 279 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCC
Confidence 457899999998889999999999998 688888886
No 142
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.46 E-value=1.2e+02 Score=23.02 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=27.3
Q ss_pred ChhHHHHHHHh--CCCCCCeEEEEeCCCc--hHHHHHHHHHHcCCc
Q 027877 124 NPNFVRQVEAA--VPDKESKLLVACGEGL--RSMMAASKLYEGGYR 165 (217)
Q Consensus 124 ~~~~~~~~~~~--~~~~~~~IvlyC~~G~--ra~~aa~~L~~~G~~ 165 (217)
.+.|.+++... + .+++-+|+++.+|. ....++...++.|..
T Consensus 88 ~~~~~~~~~~~~~~-~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 88 DEGFARQLLALYDI-RPGDVLIVISNSGNSPNVIEAAEEAKERGMK 132 (138)
T ss_dssp GGTHHHHHHHHTT---TT-EEEEEESSS-SHHHHHHHHHHHHTT-E
T ss_pred hhHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Confidence 35677777776 4 67778888898887 355688888999973
No 143
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.36 E-value=72 Score=29.50 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
.+..++++|++...+.+.+..|+.+|| +..-|.|-+
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~-~a~~LhGqm 334 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGF-QAIPLHGQM 334 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCc-ceecccchh
Confidence 457899999999999999999999999 455555544
No 144
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=30.28 E-value=44 Score=31.34 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=37.0
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH---------HHHHhCCCCcccC
Q 027877 140 SKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF---------NRAIEGDFPEIEG 187 (217)
Q Consensus 140 ~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~---------~~W~~~g~p~~~~ 187 (217)
..-|+||++....-+++-.|...|+ +...|..|+ ++|.+...|+...
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 3578999997777788888999998 555555666 6899999998654
No 145
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=30.16 E-value=55 Score=26.85 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=12.5
Q ss_pred CCCeEEEEeCCCc-hHHH
Q 027877 138 KESKLLVACGEGL-RSMM 154 (217)
Q Consensus 138 ~~~~IvlyC~~G~-ra~~ 154 (217)
.+.+|+++|..|. |+..
T Consensus 165 ~~~pivVHC~~G~gRsg~ 182 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGT 182 (231)
T ss_pred CCCCeEEECCCCCCccch
Confidence 3679999998775 6543
No 146
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=29.96 E-value=91 Score=29.43 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 140 SKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 140 ~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
..+|++|++...+...+..|...|| ++..+.|++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l 307 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDL 307 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCC
Confidence 3599999998899999999999998 799999986
No 147
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=29.92 E-value=95 Score=28.59 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=35.5
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+...-.-|+||++|..|..+|..|.. -|-++|..+.|||-+|.
T Consensus 100 ~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 100 VELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred HHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 3566666555532223468999999988777766544 35456778888887765
No 148
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=29.87 E-value=75 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCcceeec
Q 027877 138 KESKLLVACG---EGLRSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 138 ~~~~IvlyC~---~G~ra~~aa~~L~~~G~~nv~~l 170 (217)
.+++|+++++ +|.....++..|++.|...|+.+
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578999875 78888899999999998877764
No 149
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=29.82 E-value=79 Score=29.14 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=36.5
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--CCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+ .+..-+++|++|..|..+|..|... |-+.|..+.|||-+|.
T Consensus 96 ~~la~~L~~~~~-~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 96 ILFAEELFSYLG-LEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHHHHhCC-CCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 456667666553 3224578899999888877776552 5456777889888876
No 150
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.67 E-value=1.2e+02 Score=24.74 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=25.9
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCC----c--------------hHHHHHHHHHHcCCcceeeccc
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEG----L--------------RSMMAASKLYEGGYRNLGWLAG 172 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G----~--------------ra~~aa~~L~~~G~~nv~~l~G 172 (217)
.|++.+.+. .++.+||+...-. . ....+...|++.|.+|+++++|
T Consensus 82 ~fv~~iR~~--hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 82 GFVKTIREA--HPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHTT---SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHHh--CCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 567676654 5678898875211 0 0123555677889999999987
No 151
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=29.62 E-value=1.1e+02 Score=27.88 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=34.1
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-c-------CCcceeeccccHHHHHh
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-G-------GYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-~-------G~~nv~~l~GG~~~W~~ 179 (217)
++.+.+.+..+ .+-.-+++|++|..|..+|..|.. . |-++|..+.|||-+|..
T Consensus 89 ~la~~l~~~~p-~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~ 149 (423)
T PRK05964 89 RLAQRLVALTP-GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTI 149 (423)
T ss_pred HHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccH
Confidence 55666655553 223457889999987777666543 1 33468888898877653
No 152
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=29.04 E-value=1e+02 Score=28.25 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=35.1
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+.....-+++|++|..|..++..|.. .|-++|....|||-+|.
T Consensus 102 ~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 102 VAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 3566666555532222457889999887777766544 25456878888887775
No 153
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=28.75 E-value=79 Score=21.77 Aligned_cols=24 Identities=58% Similarity=0.895 Sum_probs=15.9
Q ss_pred eEEEEeCCCch-HHHHHHH----HHHcCC
Q 027877 141 KLLVACGEGLR-SMMAASK----LYEGGY 164 (217)
Q Consensus 141 ~IvlyC~~G~r-a~~aa~~----L~~~G~ 164 (217)
+|+++|.+|.. |...... +.+.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 68999999984 4344444 445565
No 154
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=28.62 E-value=1.5e+02 Score=23.46 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=32.5
Q ss_pred HHHHhCCCCCCeEEEEeCCCc--hHHHHHHHHHH---cCCcceeeccccHHHH
Q 027877 130 QVEAAVPDKESKLLVACGEGL--RSMMAASKLYE---GGYRNLGWLAGGFNRA 177 (217)
Q Consensus 130 ~~~~~~~~~~~~IvlyC~~G~--ra~~aa~~L~~---~G~~nv~~l~GG~~~W 177 (217)
.+...+ ++++-+|+.|..|. .|...|..|.. .|..++..+.||-.++
T Consensus 59 ~il~~l-~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 59 RILAAL-PKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHhhC-CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 444445 55667888887776 67777777755 4655899999986554
No 155
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.60 E-value=70 Score=21.89 Aligned_cols=24 Identities=46% Similarity=0.736 Sum_probs=15.5
Q ss_pred eEEEEeCCCc-hHHHHHHH----HHHcCC
Q 027877 141 KLLVACGEGL-RSMMAASK----LYEGGY 164 (217)
Q Consensus 141 ~IvlyC~~G~-ra~~aa~~----L~~~G~ 164 (217)
++++.|.+|. .|...... +.+.|+
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i 29 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGI 29 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 3789999998 44544444 445565
No 156
>PRK06062 hypothetical protein; Provisional
Probab=28.00 E-value=89 Score=28.89 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=35.8
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.+-.-|++|++|..+..+|..|.. -|-++|....|||-+|.
T Consensus 98 ~~lae~L~~~~-p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 98 SEAARLIAERA-PGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred HHHHHHHHHhC-CCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 45666666655 3333457889999988887777654 25456778888887774
No 157
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=27.99 E-value=1e+02 Score=28.14 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=34.0
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--CCcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--G~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+..+..+..-++||++|..|..+|..|... |-++|..+.|||-+|.
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 87 TLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 5566665554322223567777998888777766552 4446778888887774
No 158
>PRK07482 hypothetical protein; Provisional
Probab=27.91 E-value=1e+02 Score=28.56 Aligned_cols=53 Identities=9% Similarity=-0.049 Sum_probs=34.9
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-----cCC---cceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-----GGY---RNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-----~G~---~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.+-.-++||++|..|..+|..+.. .|. ++|..+.|||-+|.
T Consensus 97 ~~lAe~L~~~~-p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 97 ITLSKRIIDRA-PAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 45666766655 3333457889999987776666553 253 34777888888774
No 159
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=27.57 E-value=1e+02 Score=28.26 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=35.6
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+.....-++||++|..+..+|..|.. -|-.+|....|||-+|.
T Consensus 86 ~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 86 VRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred HHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 3566666665532222457899999988877776654 25456777888887774
No 160
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=27.34 E-value=1.4e+02 Score=23.38 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=30.6
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeecccc
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGG 173 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG 173 (217)
.++++++...+ .++..++++..+......+...|++.||.-..+-+.|
T Consensus 120 ~~~l~~~~~~L-k~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 120 DRFLDELPEIL-KEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHHhHHHhh-CCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 34555555555 5666666655444457788899999999654444444
No 161
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=27.32 E-value=1.1e+02 Score=28.10 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
....+++||++-..+...+..|...|+ ++..+.|++.
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 345789999998889999999999998 7888888763
No 162
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=27.26 E-value=1.2e+02 Score=26.21 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCCCeEEEEeCCCc-hHH--HHHHHHHHcCCc
Q 027877 137 DKESKLLVACGEGL-RSM--MAASKLYEGGYR 165 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~--~aa~~L~~~G~~ 165 (217)
..+..|+++|..|. ||. ..|..++..|..
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~ 184 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLS 184 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCCC
Confidence 56889999999886 655 567777777753
No 163
>PRK08297 L-lysine aminotransferase; Provisional
Probab=27.20 E-value=1.1e+02 Score=28.15 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=34.8
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH---------cCC-----cceeeccccHHHHHhC
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE---------GGY-----RNLGWLAGGFNRAIEG 180 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~---------~G~-----~nv~~l~GG~~~W~~~ 180 (217)
++.+.+.+...+.+-.-|++|++|..|..+|..|.. .|. ++|..+.|||-+|...
T Consensus 96 ~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~ 164 (443)
T PRK08297 96 RFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGY 164 (443)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchh
Confidence 455555444312333567899999987777766652 365 3587888888777543
No 164
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=27.17 E-value=1.1e+02 Score=27.96 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=33.9
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--CCcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--G~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+..+..+..-++||++|..|..+|..|... |-+.|....|||-+|.
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 87 TLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 5566665554322233567788999888777766542 4445777888887774
No 165
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.65 E-value=1.1e+02 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
...++++||++-..+...+..|...|+ ++..+.|++
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~ 279 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNK 279 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 346799999997788889999999998 677777876
No 166
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.53 E-value=80 Score=23.35 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=15.9
Q ss_pred CeEEEEeCCCchHHHHHHHHHH
Q 027877 140 SKLLVACGEGLRSMMAASKLYE 161 (217)
Q Consensus 140 ~~IvlyC~~G~ra~~aa~~L~~ 161 (217)
++|+++|+.|..+...+..+++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~ 23 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKK 23 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 4789999999876665555443
No 167
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=26.50 E-value=1.4e+02 Score=21.10 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeecc
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLA 171 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~ 171 (217)
.+-+|++-|..|..+..+...|+++|.+ +..+.
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~~-~~~~n 52 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGCD-VIELN 52 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTCE-EEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCc-EEEEe
Confidence 3458999999999999999999999984 43343
No 168
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=26.39 E-value=1e+02 Score=28.90 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=36.6
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--CCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.++. -.-+.+|++|..+..++..|... |-++|..+.|+|-+|.
T Consensus 142 ~~lAe~l~~~~p~--~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 142 NVLAEMVIDAVPS--VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred HHHHHHHHHhCCC--CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 3555666655532 34678999999988888776552 5556778889888875
No 169
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=26.33 E-value=1e+02 Score=28.59 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=36.0
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +....-+++|++|..+..++..|.. .|-.++..+.|||-+|.
T Consensus 116 ~~lae~L~~~~-p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 116 IECAEKLTEIA-GGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred HHHHHHHHHhC-CCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 35666666655 3333467899999988887777654 35456778888887664
No 170
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=26.21 E-value=1e+02 Score=22.25 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=18.9
Q ss_pred CeEEEEeCCCchHHH-----HHHHHHHcCCc
Q 027877 140 SKLLVACGEGLRSMM-----AASKLYEGGYR 165 (217)
Q Consensus 140 ~~IvlyC~~G~ra~~-----aa~~L~~~G~~ 165 (217)
.+|++.|..|..+.. .-..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 378999999985433 33458899995
No 171
>PRK08349 hypothetical protein; Validated
Probab=25.86 E-value=91 Score=25.17 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=19.6
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCccee
Q 027877 141 KLLVACGEGLRSMMAASKLYEGGYRNLG 168 (217)
Q Consensus 141 ~IvlyC~~G~ra~~aa~~L~~~G~~nv~ 168 (217)
++|+.+.+|.-|..+++.|.+.|+ +|.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~-~v~ 28 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGV-EVY 28 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCC-eEE
Confidence 456777777888888888877887 443
No 172
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=25.85 E-value=1.1e+02 Score=28.18 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=35.5
Q ss_pred hhHHHHHHHhCCCC--CCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDK--ESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+.. +..++++|++|..|..+|..|.. -|-++|....|||-+|.
T Consensus 85 ~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 85 DAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred HHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 35556666655321 24677888999988877776654 25446778888887664
No 173
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=25.76 E-value=1.1e+02 Score=28.23 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=33.7
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--------CCcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--------GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--------G~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+.. +.+-.-|++|++|..|..+|..|... |-.+|..+.|||-+|.
T Consensus 93 ~la~~l~~~~-p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 93 ELANRIAEIA-PGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 5556665555 33334678999999877766665442 2346778888887774
No 174
>PRK06541 hypothetical protein; Provisional
Probab=25.64 E-value=1.1e+02 Score=28.37 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=34.9
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc-----C---CcceeeccccHHHHHh
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG-----G---YRNLGWLAGGFNRAIE 179 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~-----G---~~nv~~l~GG~~~W~~ 179 (217)
.++.+++.+..+ .+-.-++||++|..|..+|..|... | -.+|..+.|||-+|..
T Consensus 98 ~~la~~l~~~~p-~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 159 (460)
T PRK06541 98 IELAERLAALAP-GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQ 159 (460)
T ss_pred HHHHHHHHHhCC-CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcch
Confidence 356666665553 2234578899999887777665442 2 3457788888877754
No 175
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=25.61 E-value=1.2e+02 Score=27.86 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=34.3
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc-------CCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG-------GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~-------G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.+-.-++||++|..|..+|..|... |-.+|..+.|||-+|.
T Consensus 89 ~~la~~L~~~~-p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 89 IELCRKLVAMT-PQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred HHHHHHHHhhC-CCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 34556665555 33334689999999887776665442 3346778888887664
No 176
>PRK05965 hypothetical protein; Provisional
Probab=25.44 E-value=1.3e+02 Score=27.90 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=34.2
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-c----C---CcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-G----G---YRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-~----G---~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+.. +.+-.-+++|++|..|..+|..|.. + | -++|..+.+||-+|.
T Consensus 94 ~lae~L~~~~-p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 94 RLAAKLAERA-PGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHHHHHhhC-CCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 5666666655 3334467889999987776666533 2 4 235778888887774
No 177
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=25.41 E-value=1.9e+02 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=18.5
Q ss_pred HHHHHHHh-hCCcEEEecCChhhhhh
Q 027877 55 PKEAAAAM-KEGFMLLDIRPIWETEK 79 (217)
Q Consensus 55 ~~e~~~~l-~~~~~lIDvR~~~ey~~ 79 (217)
-.++...+ +.+..+||+|+..+|..
T Consensus 154 KT~iL~~L~~~~~~vlDlE~~aehrG 179 (345)
T PRK11784 154 KTELLQALANAGAQVLDLEGLANHRG 179 (345)
T ss_pred HHHHHHHHHhcCCeEEECCchhhhcc
Confidence 34455555 55788999999999984
No 178
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.25 E-value=90 Score=20.96 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=16.1
Q ss_pred eEEEEeCCCc-hHHHHHHHHHH
Q 027877 141 KLLVACGEGL-RSMMAASKLYE 161 (217)
Q Consensus 141 ~IvlyC~~G~-ra~~aa~~L~~ 161 (217)
+++++|++|. .+......|++
T Consensus 2 kilivC~~G~~~s~~l~~~l~~ 23 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKK 23 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHH
Confidence 5899999997 45567777766
No 179
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=25.18 E-value=1e+02 Score=28.57 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=33.7
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc-----CCcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG-----GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~-----G~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+.. +.+-..+++|++|..|..+|..|... |-.+|..+.|||-+|.
T Consensus 128 ~lae~L~~~~-p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t 184 (459)
T PRK11522 128 MLAKTLAALT-PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS 184 (459)
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCc
Confidence 4555655555 33335678899999887777665542 3235777788887775
No 180
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.08 E-value=76 Score=29.37 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
.++..|+||++-..+...+..|...|+ ++..+.||+
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~-~~~~~H~~l 260 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGI-AAGAYHAGL 260 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCC-CeeEeeCCC
Confidence 456779999998889999999999998 677777876
No 181
>PRK06105 aminotransferase; Provisional
Probab=25.06 E-value=1.4e+02 Score=27.59 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=37.6
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-----cCC---cceeeccccHHHHHhCCCCc
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-----GGY---RNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-----~G~---~nv~~l~GG~~~W~~~g~p~ 184 (217)
.++.+++.+..+ .+-.-+++|++|..|..+|..|.. .|+ .+|..+.+||-+|......+
T Consensus 95 ~~lae~L~~~~p-~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~ 161 (460)
T PRK06105 95 IDLAEKLVAMAP-VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASL 161 (460)
T ss_pred HHHHHHHHHhCC-CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheec
Confidence 356666666553 333467889999987777666532 243 35778889998887544433
No 182
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.90 E-value=1.8e+02 Score=26.81 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=37.9
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-cCC--c--ceeeccccH-------------HHHHhCCCCccc
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-GGY--R--NLGWLAGGF-------------NRAIEGDFPEIE 186 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-~G~--~--nv~~l~GG~-------------~~W~~~g~p~~~ 186 (217)
.++.+.+.+.. + +.+-|++|++|..|..+|..|.+ .++ + ++....++| ..|++...|+..
T Consensus 87 ~~la~~L~~~s-~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~ 164 (404)
T COG4992 87 AELAEKLVELS-P-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP 164 (404)
T ss_pred HHHHHHHHhhC-c-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC
Confidence 35555554444 3 57789999999988887776554 443 1 455556665 346555556655
Q ss_pred C
Q 027877 187 G 187 (217)
Q Consensus 187 ~ 187 (217)
+
T Consensus 165 g 165 (404)
T COG4992 165 G 165 (404)
T ss_pred C
Confidence 4
No 183
>PRK07678 aminotransferase; Validated
Probab=24.66 E-value=1.2e+02 Score=28.03 Aligned_cols=53 Identities=8% Similarity=-0.019 Sum_probs=34.6
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--------CCcceeeccccHHHHHh
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--------GYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--------G~~nv~~l~GG~~~W~~ 179 (217)
.++.+.+.+..+ .. .-++||++|..|..+|..|... |-+.|..+.|||-+|..
T Consensus 92 ~~lae~l~~~~~-~~-~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 92 IKLAEKLNEWLG-GE-YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred HHHHHHHHHhCC-CC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 356666666552 23 3578999999877766665442 33357788888877753
No 184
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.52 E-value=1.1e+02 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=21.8
Q ss_pred CCCCeEEEEeCCCc--hHHHHHHHHHHcCCc
Q 027877 137 DKESKLLVACGEGL--RSMMAASKLYEGGYR 165 (217)
Q Consensus 137 ~~~~~IvlyC~~G~--ra~~aa~~L~~~G~~ 165 (217)
..++++.+.|-+.. .+..|+..|++.|++
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 45567777776654 788899999999974
No 185
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.48 E-value=83 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
...+++|||++-..+...+..|...|+ ++..+.|++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l 291 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDV 291 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCC
Confidence 456899999998889999999999998 788888875
No 186
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=24.47 E-value=92 Score=28.39 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCc
Q 027877 139 ESKLLVACGEGLRSMMAASKLYEGGYR 165 (217)
Q Consensus 139 ~~~IvlyC~~G~ra~~aa~~L~~~G~~ 165 (217)
..++++.-.+|.-|..|++.|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 456777778888999999999999985
No 187
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=24.42 E-value=1.2e+02 Score=28.08 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=35.7
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHHh
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAIE 179 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~~ 179 (217)
.++.+.+.+.. +.+..-+++|++|..|..+|..|.. -|-+.|....|||-+|..
T Consensus 99 ~~lae~L~~~~-p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 99 IRVAEKLAEIS-PIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTL 154 (457)
T ss_pred HHHHHHHHhhC-CCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 35666666655 3322467889999988877777655 244457777888877753
No 188
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=24.37 E-value=1.3e+02 Score=22.58 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
++++++++.. |..+..++..|...|.++++++.--..
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 4566766665 556777888888889988888765543
No 189
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=24.23 E-value=86 Score=26.22 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=12.0
Q ss_pred CCeEEEEeCCCc-hHHH
Q 027877 139 ESKLLVACGEGL-RSMM 154 (217)
Q Consensus 139 ~~~IvlyC~~G~-ra~~ 154 (217)
..+||++|..|. |+..
T Consensus 193 ~~pivVHC~~G~gRsg~ 209 (258)
T smart00194 193 TGPIVVHCSAGVGRTGT 209 (258)
T ss_pred CCCEEEEeCCCCCccch
Confidence 679999998775 5543
No 190
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=24.07 E-value=1.2e+02 Score=27.45 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=25.2
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCc
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYR 165 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~ 165 (217)
..+.+|++-..+|.-|..++..|++.|++
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G~~ 31 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAGYE 31 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcCCe
Confidence 45678999999999999999999999984
No 191
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=23.75 E-value=3.1e+02 Score=24.33 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHHh-hCCcEEEecCChhhhhhccCCCc
Q 027877 56 KEAAAAM-KEGFMLLDIRPIWETEKARVKGS 85 (217)
Q Consensus 56 ~e~~~~l-~~~~~lIDvR~~~ey~~ghIpGA 85 (217)
+++.+++ .-+.++.|+-..-..-..-|||+
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs 43 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGS 43 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCCh
Confidence 5566666 66788889876555444555554
No 192
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=23.61 E-value=1.6e+02 Score=21.24 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCCCeEEEEe---CCCchHHHHHHHHHHcCCcceee
Q 027877 137 DKESKLLVAC---GEGLRSMMAASKLYEGGYRNLGW 169 (217)
Q Consensus 137 ~~~~~IvlyC---~~G~ra~~aa~~L~~~G~~nv~~ 169 (217)
.++++|++.+ ++|.....+...|++.|.+.|..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 4567888876 68888889999999999865543
No 193
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.60 E-value=1.1e+02 Score=21.35 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
.+.+|++ ++ ..-.......|+..+..+++++ ||-.
T Consensus 49 ~~~PIll-~~-~~l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILL-VN-NSLPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEE-EC-CCCCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 3445544 44 4444777778888888888888 7653
No 194
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=23.50 E-value=1.2e+02 Score=27.99 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=34.9
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+..+ ..-.-++||++|..|..+|..|.. -|-+.|..+.|||-+|.
T Consensus 87 ~~la~~L~~~~p-~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 87 LLLAEKLIEIAP-GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHHHHHHHhCC-CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 456666666553 322357899999988887777654 35446777778776653
No 195
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.40 E-value=1.4e+02 Score=27.83 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=34.4
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-----cCC---cceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-----GGY---RNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-----~G~---~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.+-.-|+||++|..|..+|..|.. .|. .+|..+.|||-+|.
T Consensus 93 ~~lae~L~~~~-p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 93 IELSERLVKIT-PPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 35566665555 3333467889999987777766542 243 35778888887764
No 196
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.28 E-value=1.5e+02 Score=26.21 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=25.9
Q ss_pred CCeEEEE----eCCCch--HHHHHHHHHHcCCcceeeccccHHHHH--hCCCCcc
Q 027877 139 ESKLLVA----CGEGLR--SMMAASKLYEGGYRNLGWLAGGFNRAI--EGDFPEI 185 (217)
Q Consensus 139 ~~~Ivly----C~~G~r--a~~aa~~L~~~G~~nv~~l~GG~~~W~--~~g~p~~ 185 (217)
+.++|+. |..|.+ +......|++.|+ |...+.=|-.+|. ..|.++.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~-~a~fvaTGQTGimia~~Gv~iD 164 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGI-NAGFVATGQTGIMIAGYGVPID 164 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--GG
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCC-CceEEecCCceEEEecCCeecc
Confidence 3345554 556664 5667788999999 6666655667775 4445443
No 197
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.14 E-value=88 Score=30.14 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
..+...|+||++-..+...+..|...|+ ++..+.||+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l 270 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGL 270 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCC
Confidence 4557889999997788899999999998 688888887
No 198
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=23.07 E-value=2.1e+02 Score=20.76 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHcCCcceeeccccHHHHHhCCCCc
Q 027877 151 RSMMAASKLYEGGYRNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 151 ra~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~ 184 (217)
.....+..|..+|| +++.-.|-.+...+.|.++
T Consensus 14 ~~~~~a~~l~~~G~-~i~aT~gTa~~L~~~gi~~ 46 (116)
T cd01423 14 ELLPTAQKLSKLGY-KLYATEGTADFLLENGIPV 46 (116)
T ss_pred hHHHHHHHHHHCCC-EEEEccHHHHHHHHcCCCc
Confidence 45667788889999 6877655555556667654
No 199
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.06 E-value=1.1e+02 Score=30.47 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=44.6
Q ss_pred chhHHHHHHhhhhccccccccCCcccCCChhHHHHHHHhCCCCCCeEEEEeCCCc----hHHHHHHHHHHcCCcceeecc
Q 027877 96 DYSAITLLKKWVHFGYIGLWTGQKFTMFNPNFVRQVEAAVPDKESKLLVACGEGL----RSMMAASKLYEGGYRNLGWLA 171 (217)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvlyC~~G~----ra~~aa~~L~~~G~~nv~~l~ 171 (217)
+..+....+..+..+-+..-.+..+ ...+++.+... ..+.+||++|..-. ....++..|++.|.+++.++.
T Consensus 595 H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~----~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~ 669 (714)
T PRK09426 595 HDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAV----ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVV 669 (714)
T ss_pred hhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHH----HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEE
Confidence 4555566666666554444211111 12234443332 45678999996432 456788889999987898888
Q ss_pred ccH
Q 027877 172 GGF 174 (217)
Q Consensus 172 GG~ 174 (217)
||.
T Consensus 670 GG~ 672 (714)
T PRK09426 670 GGV 672 (714)
T ss_pred eCC
Confidence 875
No 200
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=23.05 E-value=1.4e+02 Score=27.86 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=42.8
Q ss_pred CChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHc--CCcceeeccccHHHHHhCCCCc
Q 027877 123 FNPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEG--GYRNLGWLAGGFNRAIEGDFPE 184 (217)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~--G~~nv~~l~GG~~~W~~~g~p~ 184 (217)
...++.+++.+..+....+.+++.++|..|..+|-.+.+. |-.+|..+.|+|-+....-..+
T Consensus 100 ~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galsl 163 (447)
T COG0160 100 PYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSL 163 (447)
T ss_pred hHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHh
Confidence 3457778887777544667788889999888877776653 4457888888886554443333
No 201
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=22.92 E-value=94 Score=28.09 Aligned_cols=25 Identities=48% Similarity=0.619 Sum_probs=19.2
Q ss_pred eEEEEeCCCchHHHHHHHHHHcCCc
Q 027877 141 KLLVACGEGLRSMMAASKLYEGGYR 165 (217)
Q Consensus 141 ~IvlyC~~G~ra~~aa~~L~~~G~~ 165 (217)
+|++--.+|.-|..+|..|++.||+
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~ 26 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYD 26 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-E
T ss_pred eEEEEccCCHHHHHHHHHHHhhccc
Confidence 5677777888999999999999994
No 202
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.80 E-value=1.6e+02 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=33.8
Q ss_pred CCCeEEEEe---CCCchHHHHHHHHHHcCCcceeecc-------ccHHHHHhCCCC
Q 027877 138 KESKLLVAC---GEGLRSMMAASKLYEGGYRNLGWLA-------GGFNRAIEGDFP 183 (217)
Q Consensus 138 ~~~~IvlyC---~~G~ra~~aa~~L~~~G~~nv~~l~-------GG~~~W~~~g~p 183 (217)
+++++++++ ++|..-..++..|++.|-++|+.+. +++..+.++|..
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~ 255 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAR 255 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCC
Confidence 456788875 5777888999999999998876444 455677666543
No 203
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.80 E-value=1.1e+02 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=21.9
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcce
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNL 167 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv 167 (217)
.+.++++...+|.-|..+++.|.+.|+ +|
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~-~V 199 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGC-RV 199 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCC-eE
Confidence 345677777888888888888888887 44
No 204
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=22.30 E-value=4e+02 Score=23.96 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=41.8
Q ss_pred eEEEEeCCCchH---HHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCccccccccCc
Q 027877 141 KLLVACGEGLRS---MMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKEKLQYATIGG 198 (217)
Q Consensus 141 ~IvlyC~~G~ra---~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~ 198 (217)
.|++.|.+|... ..+-..++..|-++|++.+-++.+-..+|+|+......+=+-+.||
T Consensus 103 rI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgG 163 (342)
T COG1077 103 RIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGG 163 (342)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCC
Confidence 466666777632 2344557889999999999999999999999988764444444444
No 205
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=22.22 E-value=1.5e+02 Score=27.96 Aligned_cols=57 Identities=7% Similarity=0.006 Sum_probs=36.5
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-----cCC---cceeeccccHHHHHhCC
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-----GGY---RNLGWLAGGFNRAIEGD 181 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-----~G~---~nv~~l~GG~~~W~~~g 181 (217)
.++.+.+.+.++..+...+++|++|..|..++..+.. .|. ++|..++++|-+|.-.+
T Consensus 136 ~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a 200 (504)
T PLN02760 136 LDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLIS 200 (504)
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhh
Confidence 3555665555433333467889999887776666543 254 35788899998886433
No 206
>PRK07036 hypothetical protein; Provisional
Probab=22.13 E-value=1.6e+02 Score=27.39 Aligned_cols=53 Identities=6% Similarity=0.110 Sum_probs=34.7
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-----cC---CcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-----GG---YRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-----~G---~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.+-.-|+||++|..|..+|..|.. .| -+.|..+.|+|-+|.
T Consensus 98 ~~lae~L~~~~-p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 98 AELAAKLAELA-PGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 35666666555 3333468899999887777666543 13 245778888887775
No 207
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=21.89 E-value=2.2e+02 Score=23.53 Aligned_cols=50 Identities=20% Similarity=0.113 Sum_probs=34.3
Q ss_pred CCCCeEEEEeC---CCchHHHHHHHHHHcCCcc---eeecc---ccHHHHHhCCCCccc
Q 027877 137 DKESKLLVACG---EGLRSMMAASKLYEGGYRN---LGWLA---GGFNRAIEGDFPEIE 186 (217)
Q Consensus 137 ~~~~~IvlyC~---~G~ra~~aa~~L~~~G~~n---v~~l~---GG~~~W~~~g~p~~~ 186 (217)
.++++|++.++ +|.....++..|++.|..- +.+++ ||.......|.|+.+
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~s 174 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSS 174 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEE
Confidence 56778988885 7778888999999999752 22444 444444456766654
No 208
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=21.74 E-value=1.4e+02 Score=28.83 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCcceeeccccHHHHHhCCCCcccCCccccccccCchHHHHHHHHHHHHH
Q 027877 153 MMAASKLYEGGYRNLGWLAGGFNRAIEGDFPEIEGKEKLQYATIGGVSYYFLRLLLLLQA 212 (217)
Q Consensus 153 ~~aa~~L~~~G~~nv~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (217)
...|..++..|+ ||.++......|.++...++.-..+++-. .|=-+|++.++--+..-
T Consensus 313 iTiAEYfRd~G~-~Vllm~DStSR~AeAlREIS~~l~E~P~~-eGYP~yL~S~La~~yER 370 (586)
T PRK04192 313 ITIAEYYRDMGY-DVLLMADSTSRWAEALREISGRLEEMPGE-EGYPAYLASRLAEFYER 370 (586)
T ss_pred HHHHHHHHHCCC-CEEEEecChHHHHHHHHHHHHhcCCCCcc-CCcCccHHHHHHHHHHh
Confidence 446677999998 89999999999998887776544333322 12234777776555443
No 209
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=21.70 E-value=2.7e+02 Score=20.68 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCCeEEEEeCCCc---hHHHHHHHHHHcCCcceeec
Q 027877 137 DKESKLLVACGEGL---RSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 137 ~~~~~IvlyC~~G~---ra~~aa~~L~~~G~~nv~~l 170 (217)
+++..|++-++... .-..+...+++.|++++.+.
T Consensus 91 ~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 91 NPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 45567888887665 34556778999999988653
No 210
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=21.53 E-value=1.1e+02 Score=24.50 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=13.7
Q ss_pred CCCCeEEEEeCCCc-hHHH
Q 027877 137 DKESKLLVACGEGL-RSMM 154 (217)
Q Consensus 137 ~~~~~IvlyC~~G~-ra~~ 154 (217)
....+|+++|..|. ||..
T Consensus 168 ~~~~pivVhc~~G~gRsg~ 186 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSGT 186 (235)
T ss_dssp TTSSEEEEESSSSSHHHHH
T ss_pred CCccceEeecccccccccc
Confidence 46789999998876 5543
No 211
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=21.31 E-value=1.2e+02 Score=24.94 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=25.0
Q ss_pred CeEEEEeCCCc-hHHHHHHHHHHcCCcceeec
Q 027877 140 SKLLVACGEGL-RSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 140 ~~IvlyC~~G~-ra~~aa~~L~~~G~~nv~~l 170 (217)
-.+.+.|.+.. ||..+-..|++.|| +|..+
T Consensus 6 l~~avvC~sN~NRSMeaH~~L~~~G~-~v~S~ 36 (195)
T KOG2424|consen 6 LRVAVVCASNQNRSMEAHNILKKKGL-NVRSF 36 (195)
T ss_pred ceeeeeehhcccchHHHHHHHHHcCC-cceee
Confidence 35778898765 99999999999999 77765
No 212
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.29 E-value=1.8e+02 Score=27.79 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
+.+.++||||.+-..+...+..|+..|| +...+.|..
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~ 375 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDK 375 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcCc-ceeeecccc
Confidence 5667899999998899999999999998 677777765
No 213
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.07 E-value=1.8e+02 Score=26.87 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.2
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccHH
Q 027877 138 KESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGFN 175 (217)
Q Consensus 138 ~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~~ 175 (217)
...++++||++-..+...+..|...|+ .+..+.|++.
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~ 370 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVP 370 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCC
Confidence 345899999998888888999999998 5777778764
No 214
>PRK07483 hypothetical protein; Provisional
Probab=21.02 E-value=1.7e+02 Score=26.94 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=32.3
Q ss_pred hHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH-c-------CCcceeeccccHHHHH
Q 027877 126 NFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE-G-------GYRNLGWLAGGFNRAI 178 (217)
Q Consensus 126 ~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~-~-------G~~nv~~l~GG~~~W~ 178 (217)
++.+.+.+.. +.+-.-++||++|..|..+|..|.. . |-.+|..+.|+|-+|.
T Consensus 77 ~lae~L~~~~-p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t 136 (443)
T PRK07483 77 ALADRLVAAA-PAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNT 136 (443)
T ss_pred HHHHHHHHhC-CCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcC
Confidence 4555665554 3333457889999877776655443 1 2234777788887774
No 215
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=20.98 E-value=2.2e+02 Score=22.97 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=34.2
Q ss_pred ChhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCcceeecccc
Q 027877 124 NPNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGG 173 (217)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG 173 (217)
.+.+++++...+ .++..+++.+............+.+.|+ .+.+.+||
T Consensus 135 ~~~~l~~i~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 182 (202)
T PRK00121 135 QPEFLALYARKL-KPGGEIHFATDWEGYAEYMLEVLSAEGG-FLVSEAGD 182 (202)
T ss_pred CHHHHHHHHHHc-CCCCEEEEEcCCHHHHHHHHHHHHhCcc-cccccchh
Confidence 456778877777 6777888877765666678888888997 45544543
No 216
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=20.74 E-value=1.3e+02 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.5
Q ss_pred CCCeEEEEe---CCCchHHHHHHHHHHcCCcceeec
Q 027877 138 KESKLLVAC---GEGLRSMMAASKLYEGGYRNLGWL 170 (217)
Q Consensus 138 ~~~~IvlyC---~~G~ra~~aa~~L~~~G~~nv~~l 170 (217)
+++++++++ ++|..-..++..|++.|-.+|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 567888875 578888899999999999877643
No 217
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=20.70 E-value=1.5e+02 Score=19.82 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHH
Q 027877 137 DKESKLLVACGEGLRSMMAASKLYE 161 (217)
Q Consensus 137 ~~~~~IvlyC~~G~ra~~aa~~L~~ 161 (217)
..+.+|++.|+++..+......+++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4578999999999988888888765
No 218
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=20.25 E-value=1e+02 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=29.4
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCcceeeccccH
Q 027877 139 ESKLLVACGEGLRSMMAASKLYEGGYRNLGWLAGGF 174 (217)
Q Consensus 139 ~~~IvlyC~~G~ra~~aa~~L~~~G~~nv~~l~GG~ 174 (217)
+...|+||++-..+...+..|...|+ ++..+.||+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~-~~~~~H~~l 258 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGI-SALAYHAGL 258 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CEEEEECCC
Confidence 56789999997788889999999998 677777876
No 219
>PRK06149 hypothetical protein; Provisional
Probab=20.04 E-value=1.6e+02 Score=30.15 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=37.1
Q ss_pred hhHHHHHHHhCCCCCCeEEEEeCCCchHHHHHHHHHH--cCCcceeeccccHHHHH
Q 027877 125 PNFVRQVEAAVPDKESKLLVACGEGLRSMMAASKLYE--GGYRNLGWLAGGFNRAI 178 (217)
Q Consensus 125 ~~~~~~~~~~~~~~~~~IvlyC~~G~ra~~aa~~L~~--~G~~nv~~l~GG~~~W~ 178 (217)
.++.+.+.+.. +.+...+++|++|..|..+|..|.. .|-+++..+++||-+|.
T Consensus 627 ~elae~L~~~~-p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 627 AEFSERLAALA-PDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 45666666655 3334568889999988877776544 46556888889888776
No 220
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.02 E-value=2.1e+02 Score=23.55 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=26.7
Q ss_pred cccCHHHHHHHhhCCcEEEecCChhhhhhccCCCcEeccCc
Q 027877 51 QPFTPKEAAAAMKEGFMLLDIRPIWETEKARVKGSLHVPLF 91 (217)
Q Consensus 51 ~~is~~e~~~~l~~~~~lIDvR~~~ey~~ghIpGAinip~~ 91 (217)
..|+.+|..+.+..+.-||||.++.|=. + || |+||-
T Consensus 6 SPin~eEA~eAieGGAdIiDVKNP~EGS---L-GA-NFPWv 41 (235)
T COG1891 6 SPINREEAIEAIEGGADIIDVKNPAEGS---L-GA-NFPWV 41 (235)
T ss_pred ccCCHHHHHHHhhCCCceEeccCcccCc---c-cC-CChHH
Confidence 4578888888888889999999998722 1 23 77763
Done!