BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027878
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 155/181 (85%)
Query: 37 VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
+DSVGT+ ASL+T+ASIQALKPD+IIN +IGDVFL+SDV FHDRRIPIP
Sbjct: 87 IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146
Query: 97 VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
+FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDMEGAAV
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAV 206
Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
AYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL VTAALE + ++VI+FING+ S+
Sbjct: 207 AYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD 266
Query: 217 L 217
L
Sbjct: 267 L 267
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 118/181 (65%), Positives = 148/181 (81%)
Query: 37 VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
V+SVGT+ ASLVTYASI A++PDLIIN I DV+++S VAFHDRRIP+P
Sbjct: 74 VESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAFHDRRIPVP 133
Query: 97 VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
V D+YGVG R F TPNL++ELNLKV +LSTGDS+DMS DE SITANDAT+KDMEGAAV
Sbjct: 134 VLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATVKDMEGAAV 193
Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
AYVAD+FKVP + +K VTD+VDG++PT+EEF++NL AVTA L++S+++VIDFI+GK S+
Sbjct: 194 AYVADIFKVPTILIKGVTDIVDGNRPTSEEFLENLAAVTAKLDESLTKVIDFISGKCLSD 253
Query: 217 L 217
L
Sbjct: 254 L 254
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus
5'-MethylthioadenosineS- Adenosylhomocysteine
Nucleosidase
Length = 230
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 40 VGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVFD 99
+G ++A++ T I KPD+IIN ++GDV + DV +HD ++
Sbjct: 51 IGKVNAAISTTLLINKFKPDVIINTGSAGALDESL-NVGDVLISDDVKYHDADATAFGYE 109
Query: 100 LYGVGQRQ-AFSTPNLLRE----------LNLKVCKLSTGDSLDMSSQDETSITAN--DA 146
+ Q AF + L E L KV + +GDS S + I +A
Sbjct: 110 YGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNA 169
Query: 147 TIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFMQN-LVAVTAALEQSVSQ 204
+ME A+A F VP + V+AV+DL +G+ + E F++ V+ + +E VSQ
Sbjct: 170 MAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQ 229
Query: 205 V 205
+
Sbjct: 230 L 230
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-
MethylthioadenosineS-Adenosylhomocysteine Nucleosidase
In Complex With Formycin A
Length = 230
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 40 VGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVFD 99
+G ++A++ T I KPD+IIN ++GDV + DV +HD ++
Sbjct: 51 IGKVNAAISTTLLINKFKPDVIINTGSAGALDESL-NVGDVLISDDVKYHDADATAFGYE 109
Query: 100 LYGVGQRQ-AFSTPNLLRE----------LNLKVCKLSTGDSLDMSSQDETSITAN--DA 146
+ Q AF + L E L KV + +GDS S + I +A
Sbjct: 110 YGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNA 169
Query: 147 TIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFMQN-LVAVTAALEQSVSQ 204
+ME A+A F VP + V+AV+DL +G+ + E F++ V+ + +E VSQ
Sbjct: 170 MAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQ 229
Query: 205 V 205
+
Sbjct: 230 L 230
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
pdb|3DP9|C Chain C, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
Length = 231
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 98
+G +SA+L T I PD++IN ++GDV + S+V HD + +
Sbjct: 49 GIGKVSAALGTALLISQYAPDVVINTGSAGGFDASL-NVGDVVISSEVRHHDADVTAFGY 107
Query: 99 DLYGV-GQRQAFSTPNLLREL---------NLKVCK--LSTGDSLDMSSQDETSITANDA 146
++ + GQ AF L + N + + TGD+ +++ + I +
Sbjct: 108 EIGQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVCTAERQQFIRQHFP 167
Query: 147 TIK--DMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFM 188
++ +ME +A+A FKVP + V+A++D+ D + P + EEF+
Sbjct: 168 SVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFL 212
>pdb|4G89|A Chain A, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
pdb|4G89|B Chain B, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
Length = 237
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 98
+G ++A++ ++ +PD+IIN +GD+ + + +HD + +
Sbjct: 54 GIGKVAAAMGATLLLERCQPDVIINTGSAGGLASTL-KVGDIVVSDEARYHDADVTAFGY 112
Query: 99 DLYG----------VGQRQAFSTPNLLRELNLKVCK--LSTGDSLDMSSQDETSITAN-- 144
+ YG ++ + + ++ L+L + + +GD+ S I N
Sbjct: 113 E-YGQLPGCPAGFKADEKLVAAAESCIKALDLNAVRGLIVSGDAFINGSVGLAKIRHNFP 171
Query: 145 DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFM 188
A +ME A+A+V FKVP + V+A++D+ D + EEF+
Sbjct: 172 QAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFL 216
>pdb|3NM4|A Chain A, Helicobacter Pylori Mtan
pdb|3NM4|B Chain B, Helicobacter Pylori Mtan
pdb|3NM5|A Chain A, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM5|B Chain B, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM6|B Chain B, Helicobacter Pylori Mtan Complexed With Adenine And Tris
Length = 230
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 116 RELNLKVCKLSTGDSLDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVT 174
+ + LK +++GD S + E ++ A+ +MEGA+VA+V F VP +++++
Sbjct: 138 QHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSIS 197
Query: 175 DLVDGDKPTA-EEFMQNLVAVTAALEQSV 202
D D + +EF++ +A +S+
Sbjct: 198 DNADEKAGMSFDEFLEKSAHTSAKFLKSM 226
>pdb|4FFS|A Chain A, Crystal Structure Of
5'-MethylthioadenosineS-Adenosylhomocysteine
Nucleosidase From Helicobacter Pylori With
Butyl-Thio-Dadme- Immucillin-A
Length = 239
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 116 RELNLKVCKLSTGDSLDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVT 174
+ + LK +++GD S + E ++ A+ +MEGA+VA+V F VP +++++
Sbjct: 147 QHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSIS 206
Query: 175 DLVDGDKPTA-EEFMQNLVAVTAALEQSV 202
D D + +EF++ +A +S+
Sbjct: 207 DNADEKAGMSFDEFLEKSAHTSAKFLKSM 235
>pdb|1ZOS|A Chain A, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|B Chain B, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|C Chain C, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|D Chain D, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|E Chain E, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|F Chain F, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
Length = 230
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 76 SIGDVFLISDVAFHDRRIPIPVFDL-YGVGQRQAF---STPNLLRELNLKVCKLSTGDSL 131
++GDV + +A+HD + + F YG +Q S + ++ + +L L
Sbjct: 85 AVGDVVIADKLAYHD--VDVTAFGYAYGQMAQQPLYFESDKTFVAQIQESLSQLDQNWHL 142
Query: 132 DMSSQDETSITANDA--TIK---------DMEGAAVAYVADLFKVPALFVKAVTD 175
+ + ++ + ND IK +MEGAA+A A +P L ++A++D
Sbjct: 143 GLIATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHTLNLPVLVIRAMSD 197
>pdb|3EEI|A Chain A, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
pdb|3EEI|B Chain B, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
Length = 233
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 27 FANLNLILSEVDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDV 86
A ++L+ + +G ++A++ T I+ D +IN DV + ++
Sbjct: 41 LAGKRMVLA-LSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVG-DVVIGTET 98
Query: 87 AFHDRRIPIPVFDLYGVGQ----RQAFSTPNLLRELNLKVCK-----------LSTGDSL 131
A HD + + F Y GQ F++ +L E + + + +GD
Sbjct: 99 AHHD--VDVTAFG-YAWGQVPQLPARFASDGILIEAAKRAARTFEGAAVEQGLIVSGDRF 155
Query: 132 DMSSQDETSITANDATIK--DMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTA-EEFM 188
SS+ I + +K +ME AA+A + P + ++AV+D D + +EF+
Sbjct: 156 VHSSEGVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFL 215
Query: 189 QNLVAVTAAL 198
+ A +A +
Sbjct: 216 KTAAANSAKM 225
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1NC3|A Chain A, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC3|B Chain B, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC1|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1NC1|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1Y6Q|A Chain A, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6Q|B Chain B, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6R|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Y6R|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Z5P|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE WITH A
LIGAND-Free Purine Binding Site
pdb|3DF9|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
pdb|3DF9|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
Length = 242
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 98
+G ++A+L ++ KPD+IIN +GD+ + + +HD + +
Sbjct: 59 GIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYHDADVTAFGY 117
Query: 99 DLYG--VGQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQDETSITAN-- 144
+ YG G F + LN + +GD+ S I N
Sbjct: 118 E-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP 176
Query: 145 DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 178
A +ME A+A+V F VP + V+A++D+ D
Sbjct: 177 QAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|1Z5N|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
pdb|1Z5N|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
Length = 242
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 98
+G ++A+L ++ KPD+IIN +GD+ + + +HD + +
Sbjct: 59 GIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYHDADVTAFGY 117
Query: 99 DLYG--VGQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQDETSITAN-- 144
+ YG G F + LN + +GD+ S I N
Sbjct: 118 E-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP 176
Query: 145 DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 178
A +ME A+A+V F VP + V+A++D+ D
Sbjct: 177 QAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|3O4V|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
pdb|3O4V|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
Length = 234
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 98
+G ++A+L ++ KPD+IIN +GD+ + + +HD + +
Sbjct: 51 GIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYHDADVTAFGY 109
Query: 99 DLYG--VGQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQDETSITAN-- 144
+ YG G F + LN + +GD+ S I N
Sbjct: 110 E-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP 168
Query: 145 DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 178
A +ME A+A+V F VP + V+A++D+ D
Sbjct: 169 QAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 202
>pdb|1Z5O|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
pdb|1Z5O|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
Length = 242
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIPVF 98
+G ++A+L ++ KPD+IIN +GD+ + + +HD + +
Sbjct: 59 GIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTL-KVGDIVVSDEARYHDADVTAFGY 117
Query: 99 DLYG--VGQRQAFSTPN----------LLRELNLKVCKLSTGDSLDMSSQDETSITAN-- 144
+ YG G F + LN + +GD+ S I N
Sbjct: 118 E-YGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP 176
Query: 145 DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD 178
A +ME A+A+V F VP + V+A++++ D
Sbjct: 177 QAIAVEMEATAIAHVCHNFNVPFVVVRAISNVAD 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,383,969
Number of Sequences: 62578
Number of extensions: 181184
Number of successful extensions: 376
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 21
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)