Query 027878
Match_columns 217
No_of_seqs 160 out of 1209
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02584 5'-methylthioadenosin 100.0 1.6E-42 3.5E-47 290.3 24.9 203 10-217 41-249 (249)
2 PRK14697 bifunctional 5'-methy 100.0 2.1E-39 4.6E-44 269.5 23.3 193 6-213 25-231 (233)
3 TIGR01704 MTA/SAH-Nsdase 5'-me 100.0 3.9E-39 8.5E-44 267.1 23.7 189 5-208 22-227 (228)
4 PRK06714 S-adenosylhomocystein 100.0 5.8E-39 1.3E-43 267.0 23.4 193 5-210 24-229 (236)
5 PRK07164 5'-methylthioadenosin 100.0 5.5E-37 1.2E-41 252.0 24.1 188 4-209 26-218 (218)
6 PRK06698 bifunctional 5'-methy 100.0 1.1E-36 2.4E-41 275.7 24.0 197 4-215 23-233 (459)
7 PRK05584 5'-methylthioadenosin 100.0 8.7E-36 1.9E-40 247.2 24.1 192 4-209 22-229 (230)
8 COG0775 Pfs Nucleoside phospho 100.0 3.4E-35 7.4E-40 244.0 21.3 191 3-208 23-232 (234)
9 TIGR03664 fut_nucase futalosin 100.0 1.8E-33 3.9E-38 232.4 18.1 176 16-204 22-220 (222)
10 TIGR01705 MTA/SAH-nuc-hyp 5'-m 100.0 7.2E-33 1.6E-37 224.9 18.0 163 29-211 30-207 (212)
11 PRK13374 purine nucleoside pho 100.0 2.2E-32 4.7E-37 227.3 21.2 162 7-181 40-211 (233)
12 PRK06026 5'-methylthioadenosin 100.0 9.2E-33 2E-37 224.7 17.7 167 30-210 31-206 (212)
13 PRK08236 hypothetical protein; 100.0 1.6E-32 3.5E-37 224.8 18.1 161 32-201 29-207 (212)
14 PRK05819 deoD purine nucleosid 100.0 1.1E-31 2.4E-36 223.4 22.5 160 9-181 41-210 (235)
15 TIGR00107 deoD purine-nucleosi 100.0 2.5E-31 5.3E-36 220.9 22.2 179 6-197 35-224 (232)
16 PF01048 PNP_UDP_1: Phosphoryl 100.0 3.9E-31 8.6E-36 218.9 20.3 188 11-207 30-234 (234)
17 PRK05634 nucleosidase; Provisi 100.0 1.7E-30 3.8E-35 208.7 17.5 157 29-204 22-183 (185)
18 TIGR01718 Uridine-psphlse urid 100.0 1.3E-29 2.8E-34 212.2 21.4 158 8-180 38-218 (245)
19 PRK11178 uridine phosphorylase 100.0 2.5E-29 5.5E-34 211.0 22.3 157 8-179 43-223 (251)
20 PRK07115 AMP nucleosidase; Pro 100.0 1.9E-29 4.2E-34 211.8 20.3 144 22-180 59-213 (258)
21 TIGR01697 PNPH-PUNA-XAPA inosi 100.0 2.8E-29 6.2E-34 210.5 20.7 183 14-206 42-247 (248)
22 PRK08666 5'-methylthioadenosin 100.0 9E-28 1.9E-32 202.8 21.6 197 4-210 24-245 (261)
23 TIGR01700 PNPH purine nucleosi 100.0 6.1E-28 1.3E-32 202.4 20.0 180 14-203 42-245 (249)
24 TIGR01721 AMN-like AMP nucleos 100.0 1.9E-27 4E-32 199.9 20.9 142 31-181 63-215 (266)
25 TIGR01694 MTAP 5'-deoxy-5'-met 100.0 1.7E-27 3.8E-32 198.9 19.5 185 13-207 33-240 (241)
26 PRK08202 purine nucleoside pho 100.0 3.7E-27 8E-32 200.0 21.7 187 13-209 63-272 (272)
27 PRK08292 AMP nucleosidase; Pro 100.0 4.3E-27 9.3E-32 209.6 21.2 159 8-181 260-439 (489)
28 TIGR01717 AMP-nucleosdse AMP n 100.0 1.2E-26 2.7E-31 206.2 21.8 158 9-181 249-427 (477)
29 TIGR03468 HpnG hopanoid-associ 100.0 4.5E-27 9.7E-32 192.9 16.4 159 32-207 24-187 (212)
30 TIGR01719 euk_UDPppase uridine 99.9 3.2E-26 6.9E-31 195.4 19.6 157 10-180 62-257 (287)
31 COG0813 DeoD Purine-nucleoside 99.9 8.6E-26 1.9E-30 181.1 17.4 159 9-180 42-210 (236)
32 PRK07077 hypothetical protein; 99.9 5.1E-25 1.1E-29 182.6 19.2 149 33-197 33-202 (238)
33 COG2820 Udp Uridine phosphoryl 99.9 5.7E-24 1.2E-28 172.9 16.7 158 9-181 44-223 (248)
34 TIGR01699 XAPA xanthosine phos 99.9 1.2E-23 2.5E-28 175.8 18.0 180 14-206 42-247 (248)
35 PRK09136 5'-methylthioadenosin 99.9 1.7E-22 3.7E-27 168.7 20.6 182 12-206 32-242 (245)
36 PRK08931 5'-methylthioadenosin 99.6 5.6E-14 1.2E-18 119.6 19.5 188 14-210 38-248 (289)
37 TIGR01698 PUNP purine nucleoti 99.6 9.6E-14 2.1E-18 115.2 20.3 185 14-207 42-237 (237)
38 PRK08564 5'-methylthioadenosin 99.6 1E-13 2.2E-18 117.2 20.2 189 13-211 41-252 (267)
39 PRK07432 5'-methylthioadenosin 99.6 2.6E-13 5.6E-18 115.6 20.7 190 14-211 38-252 (290)
40 PRK07823 5'-methylthioadenosin 99.5 2E-12 4.4E-17 109.0 20.2 188 14-211 39-244 (264)
41 COG0005 Pnp Purine nucleoside 99.4 1.9E-11 4.2E-16 102.1 15.5 186 12-208 50-261 (262)
42 KOG3985 Methylthioadenosine ph 99.0 1.1E-08 2.3E-13 83.1 14.6 194 11-211 41-260 (283)
43 KOG3984 Purine nucleoside phos 99.0 2.2E-08 4.8E-13 81.8 15.9 189 14-210 67-285 (286)
44 KOG3728 Uridine phosphorylase 98.6 6.3E-07 1.4E-11 73.4 11.1 163 5-181 81-279 (308)
45 PF06516 NUP: Purine nucleosid 98.4 1.4E-05 3.1E-10 68.7 15.2 172 33-208 51-308 (314)
46 COG5042 NUP Purine nucleoside 86.9 0.5 1.1E-05 40.3 2.4 175 31-209 83-342 (349)
47 PRK13195 pyrrolidone-carboxyla 68.1 11 0.00024 31.2 4.8 36 45-82 49-84 (222)
48 PF01470 Peptidase_C15: Pyrogl 62.0 32 0.00069 27.8 6.4 28 44-71 47-74 (202)
49 PRK00994 F420-dependent methyl 57.2 31 0.00067 29.0 5.5 40 33-73 37-76 (277)
50 COG2039 Pcp Pyrrolidone-carbox 56.9 46 0.00099 27.0 6.2 37 44-82 47-83 (207)
51 PRK13196 pyrrolidone-carboxyla 51.4 43 0.00094 27.4 5.5 27 45-71 49-75 (211)
52 PRK13194 pyrrolidone-carboxyla 48.1 54 0.0012 26.8 5.6 28 44-71 47-74 (208)
53 PRK13193 pyrrolidone-carboxyla 45.1 30 0.00065 28.3 3.7 28 44-71 47-74 (209)
54 PRK14815 NADH dehydrogenase su 42.6 79 0.0017 25.4 5.5 36 33-71 78-114 (183)
55 COG1927 Mtd Coenzyme F420-depe 39.2 70 0.0015 26.5 4.8 40 32-72 36-75 (277)
56 TIGR00504 pyro_pdase pyrogluta 36.8 47 0.001 27.1 3.6 27 45-71 46-72 (212)
57 cd01983 Fer4_NifH The Fer4_Nif 33.9 1.1E+02 0.0024 20.0 4.7 27 34-60 4-30 (99)
58 KOG1468 Predicted translation 33.7 57 0.0012 28.1 3.6 40 122-171 235-274 (354)
59 TIGR01957 nuoB_fam NADH-quinon 33.7 98 0.0021 23.8 4.7 36 33-71 62-98 (145)
60 PRK13197 pyrrolidone-carboxyla 33.2 58 0.0013 26.7 3.6 27 45-71 49-75 (215)
61 PF02374 ArsA_ATPase: Anion-tr 32.1 58 0.0013 28.1 3.6 30 33-62 5-34 (305)
62 cd00501 Peptidase_C15 Pyroglut 31.2 69 0.0015 25.5 3.7 27 45-71 48-74 (194)
63 PRK13236 nitrogenase reductase 30.6 1.1E+02 0.0023 26.2 5.0 29 35-63 12-40 (296)
64 PF01583 APS_kinase: Adenylyls 30.5 1.4E+02 0.0031 23.1 5.3 33 31-63 4-36 (156)
65 PRK14813 NADH dehydrogenase su 28.4 1.1E+02 0.0025 24.6 4.4 36 33-71 72-108 (189)
66 COG0182 Predicted translation 28.2 87 0.0019 27.6 3.9 44 123-176 231-274 (346)
67 PRK14818 NADH dehydrogenase su 27.9 97 0.0021 24.6 3.8 36 33-71 75-111 (173)
68 CHL00175 minD septum-site dete 27.1 1.4E+02 0.003 24.9 5.1 28 33-60 20-47 (281)
69 PF00512 HisKA: His Kinase A ( 26.9 6 0.00013 25.4 -2.7 54 156-209 6-63 (68)
70 COG0455 flhG Antiactivator of 25.6 1.7E+02 0.0037 24.7 5.3 32 33-64 7-38 (262)
71 COG0003 ArsA Predicted ATPase 25.6 1.5E+02 0.0033 25.9 5.1 45 33-83 6-50 (322)
72 KOG3022 Predicted ATPase, nucl 25.3 1.6E+02 0.0036 25.4 5.0 39 30-68 49-88 (300)
73 PRK10818 cell division inhibit 24.7 1.7E+02 0.0037 24.2 5.1 27 33-59 7-33 (270)
74 CHL00023 ndhK NADH dehydrogena 24.7 1.1E+02 0.0024 25.3 3.8 36 33-71 76-112 (225)
75 PRK13230 nitrogenase reductase 23.2 1.6E+02 0.0035 24.5 4.8 28 35-62 7-34 (279)
76 PF06415 iPGM_N: BPG-independe 23.1 3.8E+02 0.0082 22.2 6.7 57 119-190 29-85 (223)
77 PF00142 Fer4_NifH: 4Fe-4S iro 22.9 1.8E+02 0.0039 24.9 4.8 32 34-66 5-36 (273)
78 cd02032 Bchl_like This family 22.7 1.8E+02 0.0039 24.0 4.9 27 35-61 6-32 (267)
79 PRK14816 NADH dehydrogenase su 22.4 1E+02 0.0022 24.8 3.1 36 33-71 86-122 (182)
80 PF12641 Flavodoxin_3: Flavodo 22.0 1.1E+02 0.0024 23.8 3.3 36 33-71 45-80 (160)
81 PF01008 IF-2B: Initiation fac 22.0 1.5E+02 0.0033 24.8 4.3 29 145-173 191-219 (282)
82 CHL00072 chlL photochlorophyll 21.4 1.9E+02 0.0041 24.6 4.8 28 33-60 4-31 (290)
83 PRK06371 translation initiatio 21.3 1.4E+02 0.0031 26.2 4.1 29 145-173 230-258 (329)
84 COG2894 MinD Septum formation 20.8 1.6E+02 0.0035 24.8 4.0 47 31-83 5-51 (272)
85 TIGR01968 minD_bact septum sit 20.8 2.3E+02 0.0049 23.0 5.1 28 33-60 6-33 (261)
86 COG3260 Ni,Fe-hydrogenase III 20.7 2.2E+02 0.0047 21.9 4.4 36 33-71 54-90 (148)
87 PRK06372 translation initiatio 20.4 89 0.0019 26.4 2.5 28 145-172 166-193 (253)
88 PRK06411 NADH dehydrogenase su 20.0 1.5E+02 0.0032 23.8 3.6 36 33-71 79-115 (183)
No 1
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=100.00 E-value=1.6e-42 Score=290.31 Aligned_cols=203 Identities=69% Similarity=0.975 Sum_probs=184.0
Q ss_pred ecCcEEEEEEEcceeEEEeeeeeEeeC------CCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 10 VVGHTCTQQEYEIHDLFFANLNLILSE------VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 10 ~~g~~~~~G~~~~~~v~~~~v~~~~~G------~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
..++.+|+|+|+|++|.+ +.+| +||||++|||+++++++.+++|+.||++|+|||++++++++||+|++
T Consensus 41 ~~~~~~~~G~~~g~~V~v-----~~sG~~~~~~i~~IGkvnAA~~~~~li~~~~~~~II~~G~aG~l~~~~l~vGDvVia 115 (249)
T PLN02584 41 GVPWVRYSGTHKGLRVHV-----VCPGKDKALGVDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLA 115 (249)
T ss_pred cCCeeEEEEEECCEEEEE-----EecCCccccccCccCHHHHHHHHHHHHHhcCCCEEEEEecccCcCcCCCCcCCEEEE
Confidence 678899999999999999 8898 88899999999999999999999999999999998337999999999
Q ss_pred cceeeccCCCCCCCcccCCCCccCCCCChhHhhcCcceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhC
Q 027878 84 SDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLF 163 (217)
Q Consensus 84 ~~~~~~d~~~~~p~f~~y~~g~~p~~~~~~l~~~~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~ 163 (217)
++++++|.+...|.|+.|.+++.|.++++.+.....++.|.++|+|.|+.+.+..+.+++++++++|||+||+|++|+.+
T Consensus 116 ~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~G~i~SgD~F~~~~~~~~~~~~~~a~~vDME~aAia~va~~~ 195 (249)
T PLN02584 116 TAVANHDRRIPIPVFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNSLDMTEQDEESIKANDATVKDMEGAAVAYVADLL 195 (249)
T ss_pred CeeEecccCCCcccccccccCccccCCCHHHHhhCCCeEEEEEEeCEEeCCHHHHHHHHHcCCcEEechHHHHHHHHHHh
Confidence 99999998655556666777777777777777777889999999999998877666677789999999999999999999
Q ss_pred CCCEEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCC
Q 027878 164 KVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL 217 (217)
Q Consensus 164 ~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~~~~~~~~~ 217 (217)
++||++||+|||.++++..++++|.++...+++.+.+.+.++++.+.+|-+|+|
T Consensus 196 gvp~~~IR~ISD~~~~~~~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 249 (249)
T PLN02584 196 KVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAALQGAVPKVLDFISGKCLSEL 249 (249)
T ss_pred CCCEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 999999999999998766578999999999999999999999999999999987
No 2
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=100.00 E-value=2.1e-39 Score=269.48 Aligned_cols=193 Identities=20% Similarity=0.359 Sum_probs=161.5
Q ss_pred eeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcc
Q 027878 6 TDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISD 85 (217)
Q Consensus 6 ~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~ 85 (217)
+..+.+++++|.|++++++|.+ +.|| ||++|||+++++||++|+|+.||++|+|||++ +++++|||||+++
T Consensus 25 ~~~~~~~~~~~~G~~~g~~v~v-----~~sG---iG~vnAA~~~~~li~~f~~~~II~~G~AG~l~-~~l~iGDvVi~~~ 95 (233)
T PRK14697 25 EEQIIAGMPFYVGEFMGTEVIV-----TRCG---VGKVNAAACTQTLIHKFDVDAIINTGVAGGLH-PDVKVGDIVISTN 95 (233)
T ss_pred ceEEECCeEEEEEEECCEEEEE-----EECC---CCHHHHHHHHHHHHHhcCCCEEEEEecccCCC-CCCCcCCEEEECe
Confidence 5678999999999999999998 8999 99999999999999999999999999999999 7999999999999
Q ss_pred eeeccCCCCCCCcccCCCCccCCC-CChhHh-----------hcCcceEEEEeecCceecChHhHHHHH-hCCCcEEccc
Q 027878 86 VAFHDRRIPIPVFDLYGVGQRQAF-STPNLL-----------RELNLKVCKLSTGDSLDMSSQDETSIT-ANDATIKDME 152 (217)
Q Consensus 86 ~~~~d~~~~~p~f~~y~~g~~p~~-~~~~l~-----------~~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~~a~~vdME 152 (217)
++++|.+.+. +..+ .+..+.+ ++.+|+ .+++++.|+++|||.|+.+++.++++. +++++++|||
T Consensus 96 ~~~~D~~~~~--~~~~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~i~SgD~fi~~~~~~~~l~~~~~~~~vdME 172 (233)
T PRK14697 96 VTHHDVSKTQ--MKNL-FPFQEEFIASKELVELARKACNSSSLHIEIHEGRIVSGECFVEDSKLKAKLIDEYAPHCTEME 172 (233)
T ss_pred eEEcCCChhh--hccc-CCCCcccCCCHHHHHHHHHHhhhccCCccEEEeEEEEcCeecCCHHHHHHHHHhcCCeEEEeh
Confidence 9999986431 1111 1111223 244442 135789999999999999988877776 5899999999
Q ss_pred chHHHHHHHhCCCCEEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 027878 153 GAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFINGKR 213 (217)
Q Consensus 153 ~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~~~~ 213 (217)
++|++++|+.+++||++||+|||.++++.. +|++| ...+++...++++++|+.+.+++
T Consensus 173 ~aAva~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~---~~~aa~~~~~~~~~~l~~~~~~~ 231 (233)
T PRK14697 173 GAAIGHVAYINEVPFLVIRCISDSADDEAQISYDDF---AKTAANYCSEIIVEMLKNISSKT 231 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHH---HHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999998765 55655 55677777889999999988764
No 3
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=100.00 E-value=3.9e-39 Score=267.14 Aligned_cols=189 Identities=25% Similarity=0.399 Sum_probs=159.7
Q ss_pred CeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEc
Q 027878 5 GTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLIS 84 (217)
Q Consensus 5 ~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~ 84 (217)
-+.++..++++|+|++++++|.+ +.|| ||++|||+++++||.+|+|+.||++|+|||++ +++++||+||++
T Consensus 22 ~~~~~~~~~~~~~g~~~g~~v~i-----~~sG---iG~vnAA~~~~~li~~~~p~~II~~G~aG~l~-~~l~~GDvvi~~ 92 (228)
T TIGR01704 22 RQTISLGGCEIYTGQLNGTEVAL-----LKSG---IGKVAAALGATLLLEHCKPDVIINTGSAGGLA-PTLKVGDIVVSD 92 (228)
T ss_pred CceEEECCeEEEEEEECCEEEEE-----EECC---CCHHHHHHHHHHHHHhCCCCEEEEEeeccCCC-CCCccCCEEEEE
Confidence 45778999999999999999998 9999 99999999999999999999999999999999 799999999999
Q ss_pred ceeeccCCCCCCCcccCCCCccCCC-----CChhHhh---------cCcceEEEEeecCceecChHhHHHHHh-C-CCcE
Q 027878 85 DVAFHDRRIPIPVFDLYGVGQRQAF-----STPNLLR---------ELNLKVCKLSTGDSLDMSSQDETSITA-N-DATI 148 (217)
Q Consensus 85 ~~~~~d~~~~~p~f~~y~~g~~p~~-----~~~~l~~---------~~~~~~G~i~Sgd~~~~~~~~~~~l~~-~-~a~~ 148 (217)
+++++|.+.+ .| .|++|+.|.. ++++|.+ +++++.|+++|+|.|+.+++.++++++ + ++++
T Consensus 93 ~~~~~d~~~~--~~-~~~~g~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~i~T~d~f~~~~~~~~~l~~~~~~~~~ 169 (228)
T TIGR01704 93 EARYHDADVT--AF-GYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIA 169 (228)
T ss_pred EEEEccCccc--cc-CCcCCcCCCCCceeeCCHHHHHHHHHHHHhcCCCeEEEEEEEcChhcCCHHHHHHHHHHCCcccE
Confidence 9999998654 23 2555555543 3555432 467899999999999999988888874 5 8999
Q ss_pred EcccchHHHHHHHhCCCCEEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 149 KDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDF 208 (217)
Q Consensus 149 vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~ 208 (217)
+|||++|++++|+++++||++||+|||.+++++. +|++| ...++....++++++|++
T Consensus 170 vdME~aAva~va~~~~ip~~~iR~ISD~a~~~~~~~~~~~---~~~aa~~~~~~~~~~~~~ 227 (228)
T TIGR01704 170 VEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEF---LAVAAKQSSLMVESLVQK 227 (228)
T ss_pred ecccHHHHHHHHHHhCCCEEEEEEecccCCCccccCHHHH---HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998765 55555 555666666778887775
No 4
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=5.8e-39 Score=266.99 Aligned_cols=193 Identities=19% Similarity=0.233 Sum_probs=157.5
Q ss_pred CeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEc
Q 027878 5 GTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLIS 84 (217)
Q Consensus 5 ~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~ 84 (217)
-+..+..+++||.|++++++|.+ +.|| |||+|||++++.||++|+|+.||++|+|||++ +++++|||||++
T Consensus 24 ~~~~~~~~~~~~~g~~~~~~vv~-----~~sG---iGkvnAA~~~~~li~~f~~~~IIn~G~aG~l~-~~l~iGDvVi~~ 94 (236)
T PRK06714 24 ERIEKRAAWEFHFHTINDLEIIS-----VITG---VGKVSCASCVQLLISEFQPDELFMTGICGSLS-NKVKNGHIVVAL 94 (236)
T ss_pred cceEEEcCeEEEEEEECCEEEEE-----EeCC---CCHHHHHHHHHHHHHhCCCCEEEEEEcccCCC-CCCCCCCEEEEC
Confidence 35778999999999999999999 9999 99999999999999999999999999999999 799999999999
Q ss_pred ceeeccCCCCCCC---cccCCCCccCCCC-ChhHhh-------cCcceEEEEeecCceecChHhHHHHH-hCCCcEEccc
Q 027878 85 DVAFHDRRIPIPV---FDLYGVGQRQAFS-TPNLLR-------ELNLKVCKLSTGDSLDMSSQDETSIT-ANDATIKDME 152 (217)
Q Consensus 85 ~~~~~d~~~~~p~---f~~y~~g~~p~~~-~~~l~~-------~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~~a~~vdME 152 (217)
++++||.+.+..+ |..| .+..+.++ ++.|.. ..+++.|+++|||.|+.+++.++++. +++++++|||
T Consensus 95 ~~~~~D~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~SgD~Fv~~~~~~~~l~~~~~a~~vdME 173 (236)
T PRK06714 95 NAIQHDVTAAGSGEDVFNLY-NGRTAPIETTKSLVRRIKKIRSYDPIHFGTFLSGDQRIRSSEMRYLLHTVYGALAVDQE 173 (236)
T ss_pred eeeeccCccccCCccccccc-CCccccccCCHHHHHHHHHHhccCCeEEeEEEecCeecCCHHHHHHHHHHCCCeEEEeh
Confidence 9999997543211 2112 12222344 444432 24689999999999999888777776 5799999999
Q ss_pred chHHHHHHHhCCCCEEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027878 153 GAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFIN 210 (217)
Q Consensus 153 ~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~ 210 (217)
+||+|++|+.+++||++||+|||.++++.. +|++| ..+++....++++.+|+.+.
T Consensus 174 ~aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f---~~~aa~~sa~~~~~~l~~~~ 229 (236)
T PRK06714 174 VAAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIF---KMLACERACEHLIAFLRVYE 229 (236)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHH---HHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999997765 55555 55555555677777777763
No 5
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=100.00 E-value=5.5e-37 Score=252.01 Aligned_cols=188 Identities=21% Similarity=0.259 Sum_probs=159.2
Q ss_pred CCeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 4 NGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 4 ~~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
+-+.+...++++|.|+++++++.+ +.|| ||++|||++++.||.+|+|+.||++|+|||+ + ++++||+|++
T Consensus 26 ~~~~~~~~~~~~y~~~~~g~~v~~-----~~sG---iGkv~aa~~~~~lI~~~~~~~iI~~G~aG~l-~-~~~~gdvvi~ 95 (218)
T PRK07164 26 LLKNIESFQKKIAIFRYKNYNILY-----INTG---IGLINAALATQKLIEKYQIEIIINYGAVGSN-I-NIDLGQVVYP 95 (218)
T ss_pred cceeEEecCceEEEEEECCEEEEE-----EECC---CCHHHHHHHHHHHHHHcCCCEEEEEEcccCc-C-CCCCCCEEEE
Confidence 335678899999999999999999 8999 9999999999999999999999999999999 3 7999999999
Q ss_pred cceeeccCCCCCCCcccCCCCccCCC----CChhHhhcCcceEEEEeecCceecChHhHHHHHhC-CCcEEcccchHHHH
Q 027878 84 SDVAFHDRRIPIPVFDLYGVGQRQAF----STPNLLRELNLKVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAY 158 (217)
Q Consensus 84 ~~~~~~d~~~~~p~f~~y~~g~~p~~----~~~~l~~~~~~~~G~i~Sgd~~~~~~~~~~~l~~~-~a~~vdME~aava~ 158 (217)
+++++||... + + |.+++.|.. ++..+ ...++.|.++|||.|+.+++.+++++++ ++++||||+||+|+
T Consensus 96 ~~~~~~D~~~--~-~--~~~g~~p~~~~~~~~~~~--~~~~~~~~i~SgD~Fi~~~~~~~~l~~~~~a~~vDME~aAiaq 168 (218)
T PRK07164 96 EKFYLLDAIT--P-W--YPPGQTPGEKEFYENNKI--NKNFNKIHLGSSNSFIFDLDKLKIIKDFIFVSFFDMEAFALAQ 168 (218)
T ss_pred eeeEEcccCC--c-C--CCcccCCCCcccccchhh--hcCCcEEEEEeCCccCCCHHHHHHHHhcCCCcEEEchHHHHHH
Confidence 9999999852 2 2 455666543 33333 2345678899999999998888888766 99999999999999
Q ss_pred HHHhCCCCEEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027878 159 VADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFI 209 (217)
Q Consensus 159 ~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~ 209 (217)
+|+++++||++||+|||.+++.. ++++|.++..+++...++.+.++|+.+
T Consensus 169 v~~~~~vpf~~ir~ISD~~~~~~-~~~~~~~~~~~a~~~~~~~v~~~l~~~ 218 (218)
T PRK07164 169 VCFKNKVKFYCIKYVSDFIENNS-DIEIVNNNIKKGSKKALEFIFELLENI 218 (218)
T ss_pred HHHHcCCCEEEEEEEccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999997544 567777778888888888888888753
No 6
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=100.00 E-value=1.1e-36 Score=275.69 Aligned_cols=197 Identities=20% Similarity=0.365 Sum_probs=162.9
Q ss_pred CCeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 4 NGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 4 ~~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
+.+..+++|.+||+|+++|++|.+ +.|| ||++|||++++.||.+|+|+.||++|+|||++ +++++|||||+
T Consensus 23 ~~~~~~~~~~~~~~G~~~g~~v~v-----~~sG---iG~v~AA~~~~~li~~~~~~~ii~~G~aG~l~-~~l~~gDvvi~ 93 (459)
T PRK06698 23 MQEEQIIAGMPFYVGEFMGTEVIV-----TRCG---VGKVNAAACTQTLIHKFDVDAIINTGVAGGLH-PDVKVGDIVIS 93 (459)
T ss_pred ccceEEECCeEEEEEEECCEEEEE-----EECC---CCHHHHHHHHHHHHHhcCCCEEEEEecccCCC-CCCcCCCEEEE
Confidence 346778999999999999999998 8999 99999999999999999999999999999999 89999999999
Q ss_pred cceeeccCCCCCCCcccCCCCccCCC-CChhHh-------h----cCcceEEEEeecCceecChHhHHHHH-hCCCcEEc
Q 027878 84 SDVAFHDRRIPIPVFDLYGVGQRQAF-STPNLL-------R----ELNLKVCKLSTGDSLDMSSQDETSIT-ANDATIKD 150 (217)
Q Consensus 84 ~~~~~~d~~~~~p~f~~y~~g~~p~~-~~~~l~-------~----~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~~a~~vd 150 (217)
++++++|.+.+ .+..+ .+..+.+ ++.+|+ + +.+++.|+++|||.|+.+++.++++. ++++.+||
T Consensus 94 ~~~~~~d~~~~--~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~G~i~sgd~f~~~~~~~~~l~~~~~a~~ve 170 (459)
T PRK06698 94 TNVTHHDVSKT--QMKNL-FPFQEEFIASKELVELARKACNSSSLHMEIHEGRIVSGECFVEDSKLKAKLIDEYAPHCTE 170 (459)
T ss_pred ceeEEccCCcc--ccCCc-CCCCCCcCCCHHHHHHHHHHHHhccCCccEEEeeEEecCeecCCHHHHHHHHHHcCCcEEe
Confidence 99999998643 12111 1111223 344443 1 24689999999999999988888776 58999999
Q ss_pred ccchHHHHHHHhCCCCEEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC
Q 027878 151 MEGAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFINGKRFS 215 (217)
Q Consensus 151 ME~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~~~~~~ 215 (217)
||+||++++|+++++||++||+|||.++++.. +|++| ...+++...++++.+|+.+..+..+
T Consensus 171 ME~aava~va~~~~vp~~~iR~iSD~a~~~~~~~~~~~---~~~a~~~~~~~v~~~l~~~~~~~~~ 233 (459)
T PRK06698 171 MEGAAIGHVAYINEVPFLVIRCISDSADDEAQISYDDF---AKTAANYCSEIIVEMLKTISSKTYS 233 (459)
T ss_pred hhhHHHHHHHHHcCCCEEEEEEeccCCCCCCccCHHHH---HHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999998776 55555 4566666678888888888765443
No 7
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=8.7e-36 Score=247.15 Aligned_cols=192 Identities=27% Similarity=0.442 Sum_probs=159.1
Q ss_pred CCeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 4 NGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 4 ~~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
+.+.+...+.+||.|++++++|.+ +.+| ||+++||+++++++.+++|+.||++|+||+++ +++++|||+++
T Consensus 22 ~~~~~~~~~~~~~~g~~~g~~v~v-----~~tG---~G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~-~~~~~GDvvi~ 92 (230)
T PRK05584 22 NAQTITLAGREFYTGTLHGHEVVL-----VLSG---IGKVAAALTATILIEHFKVDAVINTGVAGGLA-PGLKVGDVVVA 92 (230)
T ss_pred ccceEecCCcEEEEEEECCEEEEE-----EECC---cCHHHHHHHHHHHHHhcCCCEEEEEEecCCCC-CCCccCCEEEE
Confidence 346678899999999999999998 8899 99999999999999999999999999999999 79999999999
Q ss_pred cceeeccCCCCCCCcccCCCCccCC----C-CChhHhh---------cCcceEEEEeecCceecChHhHHHHHh-C-CCc
Q 027878 84 SDVAFHDRRIPIPVFDLYGVGQRQA----F-STPNLLR---------ELNLKVCKLSTGDSLDMSSQDETSITA-N-DAT 147 (217)
Q Consensus 84 ~~~~~~d~~~~~p~f~~y~~g~~p~----~-~~~~l~~---------~~~~~~G~i~Sgd~~~~~~~~~~~l~~-~-~a~ 147 (217)
++++++|.+.+..+| ..+..|. + ++++|.+ +++++.|.++|+|.|+.+++..+++++ + +++
T Consensus 93 ~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~~~s~d~f~~~~~~~~~l~~~~~~~~ 169 (230)
T PRK05584 93 DELVQHDVDVTAFGY---PYGQVPGLPAAFKADEKLVALAEKAAKELNLNVHRGLIASGDQFIAGAEKVAAIRAEFPDAL 169 (230)
T ss_pred CeEEEeccCccccCC---cCCccCCCCcceeCCHHHHHHHHHHHHhcCCcEEEEEEEEcchhcCCHHHHHHHHHhCCCCe
Confidence 999999876432112 2222232 2 3555531 477899999999999999888888875 6 999
Q ss_pred EEcccchHHHHHHHhCCCCEEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027878 148 IKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFI 209 (217)
Q Consensus 148 ~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~ 209 (217)
++|||++|++++|+++++||++||+|||.+++++. ++|.+++..+++...+++.++|+.+
T Consensus 170 ~veME~aa~a~va~~~~vp~~~ir~vSd~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (230)
T PRK05584 170 AVEMEGAAIAQVCHEFGVPFVVVRAISDTADDEAH--VSFDEFLAVAAKYSANILKRMLEKL 229 (230)
T ss_pred EEechHHHHHHHHHHcCCCEEEEEEeccCCCCccc--ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998875 4555555566666667777777754
No 8
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=244.01 Aligned_cols=191 Identities=28% Similarity=0.492 Sum_probs=161.9
Q ss_pred CCCeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEE
Q 027878 3 TNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFL 82 (217)
Q Consensus 3 ~~~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi 82 (217)
.+-+.+.+.+..+|.|++.++++.+ +.+| ||+++||.+++.++..|+|+.|||+|+|||++ +++++||+|+
T Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~vvl-----~~sg---IG~v~aA~~t~~~i~~~~p~~iI~~G~aGgl~-~~~~iGDvvv 93 (234)
T COG0775 23 GDAEEIAIAGTKFYTGQMAGKEVVL-----VLSG---IGKVNAALTTTLLLAKFSPDAVINTGSAGGLV-SSLAIGDVVV 93 (234)
T ss_pred cCceEEEecceEEEEEEEcCeEEEE-----EEeC---cCHHHHHHHHHHHHHhcCCCEEEEeeeccCcC-CCCccccEEE
Confidence 3567778888999999999999888 9999 99999999999999999999999999999999 7999999999
Q ss_pred EcceeeccCCCCCCCcccCCCCccC-CC-----CChhHh---------hcCcceEEEEeecCceecChHhHHHHH-hC-C
Q 027878 83 ISDVAFHDRRIPIPVFDLYGVGQRQ-AF-----STPNLL---------RELNLKVCKLSTGDSLDMSSQDETSIT-AN-D 145 (217)
Q Consensus 83 ~~~~~~~d~~~~~p~f~~y~~g~~p-~~-----~~~~l~---------~~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~-~ 145 (217)
++++.+||.+.+ .|. |+.|+.| .. +++.+. ...+++.|.++|||+|+.+.+...+++ .+ +
T Consensus 94 s~~~~~~D~d~~--~~~-~~~g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~Gli~tgd~fv~~~~~~~~~~~~~~~ 170 (234)
T COG0775 94 SDALSYHDVDLT--AFG-YEIGQIPTGEPALFEADEELLDLAGEVAGEGKLRLRTGLIVTGDRFVTLGEPVAKLRKAFPD 170 (234)
T ss_pred EhhHhhhhcccc--ccc-ccCCCCCCccchhccccHHHHHHHHHHHHhcCcceeEEEEEcchhhhhcchhHHHHHHHCCC
Confidence 999999999865 454 7788877 22 334442 146899999999999999888766666 45 9
Q ss_pred CcEEcccchHHHHHHHhCCCCEEEEEeeecCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 146 ATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP--TAEEFMQNLVAVTAALEQSVSQVIDF 208 (217)
Q Consensus 146 a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~--~~~~~~~~~~~a~~~~~~~l~~~l~~ 208 (217)
+.+||||++|+|++|+++++||+.||+|||.+++++. +|++|...+++.+..+ ++.+++.
T Consensus 171 a~aveME~aaia~v~~~~~vP~~~ir~ISD~a~~~~~~~~~~~f~~~aa~~s~~~---~~~~~~~ 232 (234)
T COG0775 171 ALAVEMEGAAIAQVCYRFGVPFLVLRAISDIADGGADPVSFDEFLAEAAKQSALV---LLSALEK 232 (234)
T ss_pred cEEEEecHHHHHHHHHHhCCCEEEEEEeccCCCCcCCcccHHHHHHHHHHHHHHH---HHHHHHh
Confidence 9999999999999999999999999999999998853 7888877776666554 5555544
No 9
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=100.00 E-value=1.8e-33 Score=232.35 Aligned_cols=176 Identities=22% Similarity=0.298 Sum_probs=141.8
Q ss_pred EEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCC
Q 027878 16 TQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPI 95 (217)
Q Consensus 16 ~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~ 95 (217)
|+|+|+++++.+ +.+| ||+++||+++++++.+|+|+.||++|+||+++ +++++||+|++++++++|.+...
T Consensus 22 ~~G~~~g~~v~v-----~~tG---iG~v~aA~~~~~~i~~~~~~~ii~~G~aG~l~-~~~~~GDvvv~~~~~~~d~g~~~ 92 (222)
T TIGR03664 22 YAGSVGGAGFDV-----LVTG---VGPVNAAAATARLLARAPYELVINAGIAGGFP-GSAAVGDLVVADSEIAADLGAET 92 (222)
T ss_pred cceeeCCeeEEE-----EECC---cCHHHHHHHHHHHHHhCCCCEEEEEEEcccCC-CCCCCcCEEEeeeEEEcccCccC
Confidence 899999999988 8899 99999999999999999999999999999999 78999999999999999987532
Q ss_pred C-Cccc---CCCCccC--------CCC-ChhHhh---------cCcceEEEEeecCceecChHhHHHHH-hCCCcEEccc
Q 027878 96 P-VFDL---YGVGQRQ--------AFS-TPNLLR---------ELNLKVCKLSTGDSLDMSSQDETSIT-ANDATIKDME 152 (217)
Q Consensus 96 p-~f~~---y~~g~~p--------~~~-~~~l~~---------~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~~a~~vdME 152 (217)
| .|.+ ..++..| .++ ++.|.. +++++.|+++|+|.|+.+++.++++. +++++++|||
T Consensus 93 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~i~T~d~~~~~~~~~~~l~~~~~a~aveME 172 (222)
T TIGR03664 93 PEGFLPLEALGFPQLPGGGSSYFNRIPLDPDLVERAVQLLRALGLPVARGPFLTVSTVSGTAARAEALARRFGAVAENME 172 (222)
T ss_pred CCCccccccCCCCcCCCCCccccccccCCHHHHHHHHHHhhccCcceeEeeeeeecceeCCHHHHHHHHHhcchHHHHhh
Confidence 2 1211 1111111 133 455531 36789999999999999988777766 5799999999
Q ss_pred chHHHHHHHhCCCCEEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 027878 153 GAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQ 204 (217)
Q Consensus 153 ~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 204 (217)
++|++++|+.+++||++||+|||.+++++. ++|+..++.++ +.+.+..
T Consensus 173 saava~va~~~~vP~~~IR~ISD~~~~~~~--~~w~~~~a~~~--~~~~~~~ 220 (222)
T TIGR03664 173 GFAVALAALRYGVPFLELRGISNLVGPRDR--SRWRIKEALAA--LQRAAAK 220 (222)
T ss_pred HHHHHHHHHHhCCCEEEEEeeccCCCCcch--hhcChHHHHHH--HHHHHHh
Confidence 999999999999999999999999998775 77866544443 4444443
No 10
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=100.00 E-value=7.2e-33 Score=224.94 Aligned_cols=163 Identities=20% Similarity=0.307 Sum_probs=130.0
Q ss_pred eeeeEeeCCCCcCHHHHHHHHHHHHHhc-----CCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcccCCC
Q 027878 29 NLNLILSEVDSVGTISASLVTYASIQAL-----KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGV 103 (217)
Q Consensus 29 ~v~~~~~G~~gvG~~~Aa~~~~~li~~~-----~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~~y~~ 103 (217)
++.++.|| |||+|||+++++||.+| +|+.|||+|+||+++ +++||||++++++|||.+.+ .| .|++
T Consensus 30 ~~~l~~sG---IGKVNAA~~~~~lI~~f~~~~~~pd~VIN~GvAG~~~---~~igDIVi~t~~~~hDvd~t--~~-gy~~ 100 (212)
T TIGR01705 30 LFAPLMTG---VGPVEAAIRVGAELAGLDAADALPDLVVSLGSAGSRT---LEQTEIYQAVSVSYRDIDAS--AF-GFEK 100 (212)
T ss_pred CeeEEEcC---ccHHHHHHHHHHHHHhhhhccCCCCEEEEecccCCCC---CccCCEEEEeeEEEcCcCcc--cc-CCcc
Confidence 34558999 99999999999999985 899999999999965 67999999999999998765 34 4777
Q ss_pred CccCCCC---ChhHh-------hcCcceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEEee
Q 027878 104 GQRQAFS---TPNLL-------RELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAV 173 (217)
Q Consensus 104 g~~p~~~---~~~l~-------~~~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir~I 173 (217)
|+.|..| +..+. .....+.|.++|||.| .+++++++|||++|++++|+++++||++||+|
T Consensus 101 GqiP~~~~~~~~~l~~~~~~~~~~~~~~~g~~vSgd~f----------~~~~a~~vdME~aAia~vc~~~~vpf~~iR~I 170 (212)
T TIGR01705 101 GATPFLDLPAEAALPFRIPDIAEARLSTGGAIISGAAY----------DAIAADMVDMETFACLRACQLFDVPLIGLRGI 170 (212)
T ss_pred ccCCCCCCCchhhHHHHHHHHHhccCcceeEEEECcch----------hhCCceEEechHHHHHHHHHHcCCCEEEEEEE
Confidence 8887642 22222 1223567888888876 23589999999999999999999999999999
Q ss_pred ecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027878 174 TDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFING 211 (217)
Q Consensus 174 SD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~~~ 211 (217)
||.+++++. .++|.++..+++++..+.+.++|+++..
T Consensus 171 SD~a~~~~~-~~df~~f~~~aa~~sa~~v~~ll~~~~~ 207 (212)
T TIGR01705 171 SDGAADLNH-VDDWTAYLDIIDEKLADAVDRLCQAIED 207 (212)
T ss_pred ecCCCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999876553 2345555666777777888888888753
No 11
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=100.00 E-value=2.2e-32 Score=227.32 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=134.3
Q ss_pred eEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcce
Q 027878 7 DIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (217)
Q Consensus 7 ~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~ 86 (217)
-.+.+++.+|+|+|++++|.+ +.+| ||+++|++++++|+.+|+|+.||++|+||+++ +++++||+||++.+
T Consensus 40 ~~~~~~~~~~~G~~~g~~v~v-----~~~G---iG~~~Aai~~~eLi~~~g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a 110 (233)
T PRK13374 40 VTDVRNMFGFTGTYKGKKVSV-----MGHG---MGIPSMVIYVHELIATFGVKNIIRVGSCGATQ-DDVKLMDVIIAQGA 110 (233)
T ss_pred eecccceEEEEEEECCEEEEE-----EeCC---CCHhHHHHHHHHHHHHcCCcEEEEEeccccCC-CCCCCCCEEEEeee
Confidence 456899999999999999999 9999 99999999999999999999999999999999 79999999999988
Q ss_pred eeccCCCCCCCcccCCCCccCCCCChhHh---------hcCcceEEEEeecCceecChHhHH-HHHhCCCcEEcccchHH
Q 027878 87 AFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQDET-SITANDATIKDMEGAAV 156 (217)
Q Consensus 87 ~~~d~~~~~p~f~~y~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~~~~~~~~-~l~~~~a~~vdME~aav 156 (217)
+ +|.+.. .+ .+.....|..+++.|. .+++++.|+++|+|.|+.+.+.+. .+++++++++|||++|+
T Consensus 111 ~-~d~~~~--~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G~i~T~D~F~~~~~~~~~~~~~~g~~~vEME~aAl 186 (233)
T PRK13374 111 S-TDSKTN--RI-RFSGHDFAAIADYQLLEKAVETAREKGVPVKVGNVFSSDLFYDPDEDAIEAMERFGILGVDMEVAGL 186 (233)
T ss_pred E-ecCchh--hh-ccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEEEEEEcCcccCCChHHHHHHHHcCCeEEehhHHHH
Confidence 6 565432 11 1111122333454443 246889999999999999765444 44568999999999999
Q ss_pred HHHHHhCCCCEEEEEeeecCCCCCC
Q 027878 157 AYVADLFKVPALFVKAVTDLVDGDK 181 (217)
Q Consensus 157 a~~a~~~~ip~~~ir~ISD~~~~~~ 181 (217)
+++|+.+++|+++||+|||.+....
T Consensus 187 ~~va~~~gip~~~i~~isD~~~~~~ 211 (233)
T PRK13374 187 YGLAAYLGAEALAILTVSDHIITGE 211 (233)
T ss_pred HHHHHHcCCCEEEEEEEEeeeccCC
Confidence 9999999999999999999998654
No 12
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=9.2e-33 Score=224.68 Aligned_cols=167 Identities=23% Similarity=0.343 Sum_probs=126.7
Q ss_pred eeeEeeCCCCcCHHHHHHHHHHHHHhcC-----CCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcccCCCC
Q 027878 30 LNLILSEVDSVGTISASLVTYASIQALK-----PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG 104 (217)
Q Consensus 30 v~~~~~G~~gvG~~~Aa~~~~~li~~~~-----~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~~y~~g 104 (217)
+.++.|| |||+|||++++.||.+|+ |+.|||+|+|||. ++++||||++++++|||.+.+ .| .|+.|
T Consensus 31 v~l~~sG---IGKVnAA~~t~~lI~~f~~~~~~pd~IIn~GvAGg~---~l~igDvViat~~~~hD~d~~--~~-g~~~g 101 (212)
T PRK06026 31 FTPLMTG---VGPVEAAVNLTAALARLKAAGDLPDLVVSLGSAGSA---KLEQTEVYQVSSVSYRDMDAS--PL-GFEKG 101 (212)
T ss_pred eEEEEcC---eeHHHHHHHHHHHHHHhhccCCCCCEEEEecccCCC---CCccCCEEEEeeEEEcCCCCc--cc-CCccc
Confidence 4448999 999999999999999998 9999999999994 489999999999999998765 34 36677
Q ss_pred ccCCCCChhH---hhc-CcceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCCC
Q 027878 105 QRQAFSTPNL---LRE-LNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD 180 (217)
Q Consensus 105 ~~p~~~~~~l---~~~-~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~ 180 (217)
+.|..+.+.+ ... .....+.+.|++.|++... +++++++++|||++|++++|+++++||++||+|||.++++
T Consensus 102 ~~p~~~~~~~~~l~~~~~~~~~~~i~tgg~~vsgd~----f~~~~a~~vdMEgaAvAqVc~~~~vPfl~iR~ISD~a~~~ 177 (212)
T PRK06026 102 VTPFLDLPATVELPLRIPGIPEASLSTGGNIVSGAA----YDAIDADMVDMETYAVLRACQAFGVPLIGLRGISDGAAEL 177 (212)
T ss_pred ccCCCCCchhHHHHHHHhhhhcccceecCEEeeCch----hhhcCCeEEechHHHHHHHHHHcCCCEEEEEEEecCCCcc
Confidence 7775443222 111 1233456667777776532 3457999999999999999999999999999999999876
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027878 181 KPTAEEFMQNLVAVTAALEQSVSQVIDFIN 210 (217)
Q Consensus 181 ~~~~~~~~~~~~~a~~~~~~~l~~~l~~~~ 210 (217)
.. .++|.++..+++++..+.+..++..++
T Consensus 178 a~-~~df~~f~~~aa~~sa~~v~~~~~~~~ 206 (212)
T PRK06026 178 KH-VGDWTEYLHVIDEKLAGAVDRLERALE 206 (212)
T ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 133444455555555666666666554
No 13
>PRK08236 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=224.77 Aligned_cols=161 Identities=25% Similarity=0.377 Sum_probs=128.3
Q ss_pred eEeeCCCCcCHHHHHHHHHHHHHhc--CCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCC-Cccc---CCCCc
Q 027878 32 LILSEVDSVGTISASLVTYASIQAL--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP-VFDL---YGVGQ 105 (217)
Q Consensus 32 ~~~~G~~gvG~~~Aa~~~~~li~~~--~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p-~f~~---y~~g~ 105 (217)
++.|| |||+|||++++++|.+| +|+.||++|+|||++ +++++||+|+++++++||.|...| +|.. ..++.
T Consensus 29 v~~sG---iGkv~AA~~~~~li~~~~~~p~~vI~~GvAGgl~-~~l~vGDvVva~~~~~~D~g~~~~~g~~~~~~~~~~~ 104 (212)
T PRK08236 29 VLAAG---VGPAAAAASTARALAAAAAPYDLVVSAGIAGGFP-GKAEVGSLVVADEIIAADLGAETPDGFLPVDELGFGT 104 (212)
T ss_pred EEEcC---cCHHHHHHHHHHHHHHhccCCCEEEEEecccCCC-CCCCCCCEEEEeeEEeccCCCCCccCcCccccccCCc
Confidence 38899 99999999999999999 999999999999999 799999999999999999876432 2210 01111
Q ss_pred cCCC-CChhHhh---------cCcceEEEEeecCceecChHhHHHHHh-C-CCcEEcccchHHHHHHHhCCCCEEEEEee
Q 027878 106 RQAF-STPNLLR---------ELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKDMEGAAVAYVADLFKVPALFVKAV 173 (217)
Q Consensus 106 ~p~~-~~~~l~~---------~~~~~~G~i~Sgd~~~~~~~~~~~l~~-~-~a~~vdME~aava~~a~~~~ip~~~ir~I 173 (217)
. .| .++.|.+ .++++.|+++|+|.|+.+++.++.|.+ + ++.++|||++|++++|+++++||++||+|
T Consensus 105 ~-~~~~d~~l~~~~~~~l~~~~~~~~~G~i~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~I 183 (212)
T PRK08236 105 T-TIQVDPALVRQLTEALLAAALGATAGPVLTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAI 183 (212)
T ss_pred c-eecCCHHHHHHHHHHHHhcCCCeEEeeEEecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEe
Confidence 1 12 2444431 367899999999999999998888874 6 89999999999999999999999999999
Q ss_pred ecCCCCCCccHHHHHHHHHHHHHHHHHH
Q 027878 174 TDLVDGDKPTAEEFMQNLVAVTAALEQS 201 (217)
Q Consensus 174 SD~~~~~~~~~~~~~~~~~~a~~~~~~~ 201 (217)
||.++.++. ++|+ ...|-+.+.+.
T Consensus 184 SD~~~~rd~--~~W~--~~~A~~~l~~~ 207 (212)
T PRK08236 184 SNPVGPRDR--AAWR--IKEALAALTAA 207 (212)
T ss_pred cCCCCccch--hccC--HHHHHHHHHHH
Confidence 999998765 5664 33344444433
No 14
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=1.1e-31 Score=223.43 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=134.8
Q ss_pred EecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceee
Q 027878 9 DVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (217)
Q Consensus 9 ~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~ 88 (217)
+.+++++|+|+|++++|.+ +.+| ||+++|++++++|+..++|+.||++|+|||++ +++++||+||++.+++
T Consensus 41 ~~r~~~~~~G~~~g~~v~v-----~~tG---iG~~~aai~~~eLi~~~~~~~iI~~GtaG~l~-~~l~iGDvVI~~~a~~ 111 (235)
T PRK05819 41 EVRGMLGFTGTYKGKRVSV-----MGTG---MGIPSISIYANELITDYGVKKLIRVGSCGALQ-EDVKVRDVVIAMGAST 111 (235)
T ss_pred eeccEEEEEEEECCEEEEE-----EecC---CChhHHHHHHHHHHHhcCCcEEEEEecccCCC-CCCCCCCEEEEceeEe
Confidence 7889999999999999999 8999 99999999999999989999999999999999 7999999999999875
Q ss_pred ccCCCCCCCcccCCCCccCCCCChhHhh---------cCcceEEEEeecCceecChHh-HHHHHhCCCcEEcccchHHHH
Q 027878 89 HDRRIPIPVFDLYGVGQRQAFSTPNLLR---------ELNLKVCKLSTGDSLDMSSQD-ETSITANDATIKDMEGAAVAY 158 (217)
Q Consensus 89 ~d~~~~~p~f~~y~~g~~p~~~~~~l~~---------~~~~~~G~i~Sgd~~~~~~~~-~~~l~~~~a~~vdME~aava~ 158 (217)
|.+.+. + .|.+...|..|+++|++ +++++.|+++|+|.|+.+.+. .+.+++++++++|||++|+++
T Consensus 112 -~~~~~~--~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G~v~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva~ 187 (235)
T PRK05819 112 -DSNVNR--I-RFKGHDFAPIADFDLLRKAYDAAKEKGITVHVGNVFSADLFYNPDPEMFDVLEKYGVLGVEMEAAALYG 187 (235)
T ss_pred -cCCccc--c-ccCCCCcCccCCHHHHHHHHHHHHHCCCcEEEEEEEecCcccCCCHHHHHHHHHcCCeEEeccHHHHHH
Confidence 444331 1 23332334445655541 467899999999999987654 445567899999999999999
Q ss_pred HHHhCCCCEEEEEeeecCCCCCC
Q 027878 159 VADLFKVPALFVKAVTDLVDGDK 181 (217)
Q Consensus 159 ~a~~~~ip~~~ir~ISD~~~~~~ 181 (217)
+|+.+++|+++||+|||......
T Consensus 188 va~~~~ip~~~i~~isd~~~~~~ 210 (235)
T PRK05819 188 LAAKYGVKALTILTVSDHIVTGE 210 (235)
T ss_pred HHHHhCCCEEEEEEEeeecccCC
Confidence 99999999999999999988754
No 15
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=100.00 E-value=2.5e-31 Score=220.92 Aligned_cols=179 Identities=18% Similarity=0.176 Sum_probs=141.5
Q ss_pred eeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcc
Q 027878 6 TDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISD 85 (217)
Q Consensus 6 ~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~ 85 (217)
..-+.+++++|+|+|++++|.+ +.+| ||+++|++++++|+..++|+.||++|+|||++ +++++||+||++.
T Consensus 35 ~~~~~r~~~~~~G~~~g~~v~v-----~~~G---~G~~~aai~~~eli~~~~~~~iI~~Gt~G~l~-~~~~~GdvvI~~~ 105 (232)
T TIGR00107 35 EVNEVRGMLGFTGTYKGKKISV-----MGHG---MGIPSISIYVYELIKFYEVKTIIRIGSCGAIR-PDVKLRDVIIAMG 105 (232)
T ss_pred eeeeecceEEEEEEECCEEEEE-----EeCC---CCHhHHHHHHHHHHHHcCCCEEEEEeccccCC-CCCCCCCEEEECc
Confidence 3446899999999999999999 8999 99999999999999989999999999999999 7999999999999
Q ss_pred eeeccCCCCCCCcccCCCCccCCCCChhHh---------hcCcceEEEEeecCceecChH-hHHHHHhCCCcEEcccchH
Q 027878 86 VAFHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQ-DETSITANDATIKDMEGAA 155 (217)
Q Consensus 86 ~~~~d~~~~~p~f~~y~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~~~~~-~~~~l~~~~a~~vdME~aa 155 (217)
++++|. .. +. .|.....|..|+++|. .+++++.|+++|+|.|+.+.+ ..+.+++++++++|||++|
T Consensus 106 a~~~~~-~~-~~--~~~~~~~~~~ad~~l~~~l~~~~~~~~~~~~~G~~~S~D~f~~~~~~~~~~~~~~g~~~vEME~aa 181 (232)
T TIGR00107 106 ASTDSK-YN-RV--RFVEVDFAAIADFELVELAYQTAKALGLDFHVGNVFSADAFYQPDKDVFDLMAKYGILAVEMEAAA 181 (232)
T ss_pred eeccCC-cc-hh--hcCCCCcCccCCHHHHHHHHHHHHHCCCCeEEEEEeEcCcccCCCHHHHHHHHHcCCeEEehhHHH
Confidence 987763 22 10 1211122333555543 146799999999999998654 4455667899999999999
Q ss_pred HHHHHHhCCCCEEEEEeeecCCCCCCc-cHHHHHHHHHHHHHH
Q 027878 156 VAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAA 197 (217)
Q Consensus 156 va~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~a~~~ 197 (217)
++++|+.+++|+++||+|||....... +.+++.+..+++...
T Consensus 182 l~~va~~~~~~~~~i~~vsd~~~~~~~~~~~~~~~~~~~~~~~ 224 (232)
T TIGR00107 182 LYANAAELGAKALTILTVSDHLVTHEALTAEERQTTFKDMIIL 224 (232)
T ss_pred HHHHHHHcCCcEEEEEEEEeecccCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999998876543 334444444333333
No 16
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.98 E-value=3.9e-31 Score=218.93 Aligned_cols=188 Identities=26% Similarity=0.376 Sum_probs=149.6
Q ss_pred cCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHH-HHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeec
Q 027878 11 VGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISAS-LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 89 (217)
Q Consensus 11 ~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa-~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~ 89 (217)
++.+++.|+++++++.+ +.+| ||+++++ .++++++.+++|+.||++|+|||++ +++++||||+++.++++
T Consensus 30 ~~~~~~~g~~~~~~v~i-----~~~g---~G~~~aa~~~~~~~l~~~~~~~vi~~G~~G~~~-~~~~~GDvvi~~~~~~~ 100 (234)
T PF01048_consen 30 RGFTYYTGKYGGKNVVI-----VSTG---MGPVNAAVIATQRLLEEFGPDLVIMIGICGGLD-PDIKLGDVVIPQDAIRY 100 (234)
T ss_dssp TTEEEEEEEETTEEEEE-----EEES---SSHHHHHHHHHHHHHHHCTSSEEEEEEEEEESS-TTS-TTEEEEEEEEEEE
T ss_pred CCcEEEEEEECCEEEEE-----EECC---cCCchHHHHHHHHHHHhCCCeEEEEeccccccc-cccccceEEecccEEec
Confidence 79999999999999998 9999 9999999 9999999999999999999999999 79999999999999998
Q ss_pred cCCCCCCCcc---cCCCCccCCCCChhHh---------hcCcceEEEEeecCceecChHhH-HHHHhCCCcEEcccchHH
Q 027878 90 DRRIPIPVFD---LYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQDE-TSITANDATIKDMEGAAV 156 (217)
Q Consensus 90 d~~~~~p~f~---~y~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~~~~~~~-~~l~~~~a~~vdME~aav 156 (217)
|.......++ .|.....+..+++.|. .+++++.|+++|+|.|+.+.+.. +.+++++++++|||++++
T Consensus 101 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~ 180 (234)
T PF01048_consen 101 DGDSPSFFFDEEPPYAPVSRPAPADPDLREALKEAAKALGIPVHEGPIASGDSFYRETEAEIELLQKFGADAVDMESAAV 180 (234)
T ss_dssp SSHHGHHSSETTSGTSTSCSTEESHHHHHHHHHHHHHHTTSTEEEEEEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHH
T ss_pred cCccccccccccccccccccccccCHHHHHHHHHhhhccccccccceEEEEeeeccchhhHHHHHHhcccccccchHHHH
Confidence 8753211111 1111111111334443 14789999999999999987544 445578999999999999
Q ss_pred HHHHHhCCCCEEEEEeeecCCCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 157 AYVADLFKVPALFVKAVTDLVDGDK---PTAEEFMQNLVAVTAALEQSVSQVID 207 (217)
Q Consensus 157 a~~a~~~~ip~~~ir~ISD~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~l~ 207 (217)
+++|+++++||++||+|||+++... .+.+++.+....++....+++.++|+
T Consensus 181 ~~~a~~~~ip~~~i~~isD~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~ 234 (234)
T PF01048_consen 181 AQAARERGIPFIAIRGISDYADGGDDDEWTFEEFKEFLQLAAENAAAILEELLK 234 (234)
T ss_dssp HHHHHHTT-EEEEEEEEEEETTTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEEcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999877522 24577888888888888888888774
No 17
>PRK05634 nucleosidase; Provisional
Probab=99.97 E-value=1.7e-30 Score=208.74 Aligned_cols=157 Identities=28% Similarity=0.381 Sum_probs=122.5
Q ss_pred eeeeEeeCCCCcCHHHHHHHHHHHHH--hcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcc---cCCC
Q 027878 29 NLNLILSEVDSVGTISASLVTYASIQ--ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD---LYGV 103 (217)
Q Consensus 29 ~v~~~~~G~~gvG~~~Aa~~~~~li~--~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~---~y~~ 103 (217)
++.++.|| |||+|||++++++|. +++|+.||++|+|||++ ++++ |++++++++++|.+.. .+. .|..
T Consensus 22 ~~~~~~sG---IGkvnaA~~~~~~L~~~~~~p~~iIn~G~AG~l~-~~l~--~vv~~~~v~~~D~~~~--~~~~~~~~~~ 93 (185)
T PRK05634 22 GLPLLITG---IGKVAAAVALTRALARRGVLPPRVVNIGTAGALR-DGLS--GVFEPSHVINHDFSSD--LIRALTGHPV 93 (185)
T ss_pred CCEEEEcC---CCHHHHHHHHHHHHHhcCCCCCEEEEeecccCCC-cCCC--eEEEEeeEEEcccCcc--ccccccCccc
Confidence 34558899 999999999988776 59999999999999999 6664 8999999999997653 121 1211
Q ss_pred CccCCCCChhHhhcCcceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCCCCcc
Q 027878 104 GQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPT 183 (217)
Q Consensus 104 g~~p~~~~~~l~~~~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~ 183 (217)
++.+.++ ....|.+.|||.|+.+++.++++++ ++++||||++|++++|+++++||++||+|||.++++..
T Consensus 94 ~~~~~~~--------~~~~g~i~sgD~fvs~~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR~ISD~a~~~~~- 163 (185)
T PRK05634 94 ANRLELP--------TGDGAVLATGDAFISDTATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVKHVSDSADESAL- 163 (185)
T ss_pred ccccccc--------cCCCceEecCCceecCHHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEEEeccCCCCccc-
Confidence 1111111 1235889999999999887777765 78999999999999999999999999999999998665
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027878 184 AEEFMQNLVAVTAALEQSVSQ 204 (217)
Q Consensus 184 ~~~~~~~~~~a~~~~~~~l~~ 204 (217)
++|..+...+++++.+.+++
T Consensus 164 -~~~~~~~~~aa~~~~~~~~~ 183 (185)
T PRK05634 164 -GSWPEAVDASARELGEWLAE 183 (185)
T ss_pred -ccHHHHHHHHHHHHHHHHHh
Confidence 56666667777776665543
No 18
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.97 E-value=1.3e-29 Score=212.17 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=133.2
Q ss_pred EEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEccee
Q 027878 8 IDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (217)
Q Consensus 8 ~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~ 87 (217)
.+.+++++|+|++++++|.+ +.+| ||+++|++++++|+. ++|+.||++|+|||++ +++++||+||++.++
T Consensus 38 ~~~r~~~~~~G~~~g~~v~v-----~~~G---iG~~~aai~~~eLi~-~g~~~iIr~GtaG~l~-~~~~~GDiVI~~~a~ 107 (245)
T TIGR01718 38 ASNREFVTYRGELDGKPVIV-----CSTG---IGGPSTAIAVEELAQ-LGARTFIRVGTTGAIQ-PHINVGDVLITTAAV 107 (245)
T ss_pred eccCCEEEEEEEECCEEEEE-----EcCC---CCHHHHHHHHHHHHH-hCCCEEEEeeccccCC-CCCCCCCEEEeCcee
Confidence 46788899999999999999 9999 999999999999997 7999999999999999 899999999999999
Q ss_pred eccCCCCCCCcccCCCCccCCCCChhHh---------hcCcceEEEEeecCceecChHh--------------HHHHHhC
Q 027878 88 FHDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQD--------------ETSITAN 144 (217)
Q Consensus 88 ~~d~~~~~p~f~~y~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~~~~~~--------------~~~l~~~ 144 (217)
++|.. . + .|.++..|..|+..+. .+.+++.|+++|+|.|+.+.+. .+.++++
T Consensus 108 ~~Dg~-~---~-~y~~~~~p~~~d~~l~~~l~~~~~~~~~~~~~G~v~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (245)
T TIGR01718 108 RLDGA-S---L-HYAPLEFPAVADFEVTTALVEAAESIGVRHHVGVVASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAM 182 (245)
T ss_pred cCCCc-c---c-ccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEEEEEECCcCcCCCCccccccccchhHHHHHHHHHHc
Confidence 98853 2 1 3556666666665442 1578999999999999976431 1233457
Q ss_pred CCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCCC
Q 027878 145 DATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGD 180 (217)
Q Consensus 145 ~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~ 180 (217)
+++++|||++|++++|+.+++|+.++-++++.....
T Consensus 183 g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~~~~ 218 (245)
T TIGR01718 183 GVLNYEMESATLFTLCSSQGLRAGMVAGVIVNRTQQ 218 (245)
T ss_pred CceEehhhHHHHHHHHHHcCCcEEEEEEEEeccccc
Confidence 999999999999999999999999999988886543
No 19
>PRK11178 uridine phosphorylase; Provisional
Probab=99.97 E-value=2.5e-29 Score=210.99 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=131.3
Q ss_pred EEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEccee
Q 027878 8 IDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (217)
Q Consensus 8 ~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~ 87 (217)
.+.+++++|+|+|+|++|.+ +.+| ||+++|++++++|+. ++|+.||++|+|||++ +++++||+||++.++
T Consensus 43 ~~~~~~~~~~G~~~g~~v~v-----~~~G---iG~~~Aa~~~~eLi~-~g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~ 112 (251)
T PRK11178 43 ASHREFTSWRAELDGKPVIV-----CSTG---IGGPSTSIAVEELAQ-LGVRTFLRIGTTGAIQ-PHINVGDVLVTTASV 112 (251)
T ss_pred eeccCeEEEEEEEcCEEEEE-----EecC---CCHHHHHHHHHHHHH-cCCCEEEEEeccccCC-CCCCCCCEEEeccee
Confidence 46899999999999999999 9999 999999999999986 7999999999999999 899999999999999
Q ss_pred eccCCCCCCCcccCCCCccCCCCChh----Hh-----hcCcceEEEEeecCceecChH---------------hHHHHHh
Q 027878 88 FHDRRIPIPVFDLYGVGQRQAFSTPN----LL-----RELNLKVCKLSTGDSLDMSSQ---------------DETSITA 143 (217)
Q Consensus 88 ~~d~~~~~p~f~~y~~g~~p~~~~~~----l~-----~~~~~~~G~i~Sgd~~~~~~~---------------~~~~l~~ 143 (217)
++|.... .|.+++.|..++.. |. .+.+++.|.++|+|.|+.+.+ ..+++++
T Consensus 113 ~~Dg~s~-----~y~~~~~p~~~~~~~~~~L~~~~~~~~~~~~~G~i~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~ 187 (251)
T PRK11178 113 RLDGASL-----HFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQA 187 (251)
T ss_pred cCCCCcc-----ccCCCCcCCCCCHHHHHHHHHHHHHcCCCEEEEEEeecCcccCCCCccccccccchhhHHHHHHHHHH
Confidence 9996422 46666666555432 22 157899999999999997543 1233445
Q ss_pred CCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCC
Q 027878 144 NDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG 179 (217)
Q Consensus 144 ~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~ 179 (217)
++++++|||++|++++|+.+|+|+.+|-.+......
T Consensus 188 ~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~r~~ 223 (251)
T PRK11178 188 MGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQ 223 (251)
T ss_pred cCCeEEehhHHHHHHHHHHcCCcEEEEEEEEecccc
Confidence 699999999999999999999999999877776544
No 20
>PRK07115 AMP nucleosidase; Provisional
Probab=99.97 E-value=1.9e-29 Score=211.83 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=120.9
Q ss_pred ceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcccC
Q 027878 22 IHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLY 101 (217)
Q Consensus 22 ~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~~y 101 (217)
|.+|.+ +.+| ||+++|+++++.|+. ++++.+|++|+||+++ +++++||+||++.++++|. .. .+|
T Consensus 59 g~~vsv-----~~~G---IG~psAai~~eeL~~-~g~~~iIr~GtaGaL~-~~l~~GDiVI~t~avr~dg-ts----~~Y 123 (258)
T PRK07115 59 AEGITI-----INFG---MGSPNAATIMDLLSA-LNPKAVLFLGKCGGLK-SKYQVGDYFLPIAAIRGEG-TS----DDY 123 (258)
T ss_pred CCEEEE-----EeCC---CCHHHHHHHHHHHHH-cCCCEEEEEecccCcC-CCCCCCCEEEEEEEEEcCC-cc----ccc
Confidence 788888 9999 999999999997755 6999999999999999 7999999999999998874 32 246
Q ss_pred CCCccCCCCChhHh---------hcCcceEEEEeecCceec--ChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEE
Q 027878 102 GVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDM--SSQDETSITANDATIKDMEGAAVAYVADLFKVPALFV 170 (217)
Q Consensus 102 ~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~~--~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~i 170 (217)
.+++.|..|+..|. .+.+++.|+++|+|.|+. +.+..+.+++++++++|||+||++++|+.+|+|+.+|
T Consensus 124 ~p~~~pa~~d~~l~~~l~~~~~~~~~~~~~G~v~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~~gv~~~~i 203 (258)
T PRK07115 124 FPPEVPALPNFVLQKAVSSIIRDKGLDYWTGTVYTTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFANNIPTGAL 203 (258)
T ss_pred cCCccCcCCCHHHHHHHHHHHHHcCCCeEEEEEEecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEE
Confidence 66777777765543 257899999999998553 3344455667899999999999999999999999999
Q ss_pred EeeecCCCCC
Q 027878 171 KAVTDLVDGD 180 (217)
Q Consensus 171 r~ISD~~~~~ 180 (217)
|+|||.+...
T Consensus 204 ~~isD~~~~~ 213 (258)
T PRK07115 204 LLISDLPLRP 213 (258)
T ss_pred EEEecccCCC
Confidence 9999999543
No 21
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.97 E-value=2.8e-29 Score=210.47 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=143.1
Q ss_pred EEEEEEEcceeEEEeeeeeEeeCCCCc----CHHHHHHHH-HHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceee
Q 027878 14 TCTQQEYEIHDLFFANLNLILSEVDSV----GTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~~G~~gv----G~~~Aa~~~-~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~ 88 (217)
.++.|++++++|.+ +.+| + |++++++++ .+++.+++++.||++|+||+++ +++++||+||++.+++
T Consensus 42 ~~~~G~~~g~~Vv~-----~~~g---ih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~-~~l~~GDiVI~~~~i~ 112 (248)
T TIGR01697 42 ELVFGRLGGKPVVC-----MQGR---FHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLN-PDFKPGDLMIIKDHIN 112 (248)
T ss_pred cEEEEEECCEEEEE-----EcCC---CcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhhhh
Confidence 49999999999988 7777 8 999998888 5699999999999999999999 8999999999999999
Q ss_pred ccCCCCCCCcc-cCCCCccCC---CCChhHh---------hcCcceEEE--EeecCceecChHhHHHHHhCCCcEEcccc
Q 027878 89 HDRRIPIPVFD-LYGVGQRQA---FSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEG 153 (217)
Q Consensus 89 ~d~~~~~p~f~-~y~~g~~p~---~~~~~l~---------~~~~~~~G~--i~Sgd~~~~~~~~~~~l~~~~a~~vdME~ 153 (217)
+|.......+. .+.....|. ..|++|. .+++++.|+ +.|||+|.+.++ .+.++++++++||||+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~G~~~~~~G~~f~t~~e-~~~~~~~g~~~VeME~ 191 (248)
T TIGR01697 113 LPGLNPLVGPNDDRFGTRFPDLSNAYDRELRKLAQDVAKELGFPLTEGVYVMVSGPSYETPAE-IRMLRILGADAVGMST 191 (248)
T ss_pred cCCCCCccCCCcccCCceeCCCCcccCHHHHHHHHHHHHHcCCceeeEEEEEEECCCcCCHHH-HHHHHHcCCeEEccCh
Confidence 88652100110 000011222 2355553 146788998 789999996655 4667789999999999
Q ss_pred hHHHHHHHhCCCCEEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 154 AAVAYVADLFKVPALFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVI 206 (217)
Q Consensus 154 aava~~a~~~~ip~~~ir~ISD~~~~--~~~-~~~~~~~~~~~a~~~~~~~l~~~l 206 (217)
++++++|+++++|+++||.|||.++. +.. +|++|...++++++.+.+.+..+|
T Consensus 192 aa~a~lA~~~gv~~~~i~~Vsd~a~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 247 (248)
T TIGR01697 192 VPEVIVARHCGIKVLAVSLITNMAAGITDVPLSHEEVLAAAAAAAERFISLLEDII 247 (248)
T ss_pred HHHHHHHHHCCCcEEEEEEEEecCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999984 334 889988877666666666666554
No 22
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.96 E-value=9e-28 Score=202.81 Aligned_cols=197 Identities=14% Similarity=0.162 Sum_probs=156.2
Q ss_pred CCeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcC------HHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCc
Q 027878 4 NGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVG------TISASLVTYASIQALKPDLIINAGTAGGFKAKGASI 77 (217)
Q Consensus 4 ~~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG------~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~ 77 (217)
+-..+.+.+.+++.|+++|++|.+. ..+| +| ++|+++.++. +.+++++.||++|+|||++ +++++
T Consensus 24 ~~~~~~~g~~~~~~G~~~g~~Vv~l----~~~G---~gh~~~~~kVn~~a~~~~-l~~~Gv~~II~tgsaGsl~-~~l~~ 94 (261)
T PRK08666 24 ETVETPYGEVKVKIGTYAGEEVAFL----ARHG---EGHSVPPHKINYRANIWA-LKELGVERILATSAVGSLN-PNMKP 94 (261)
T ss_pred ceeEeeCCCCEEEEEEECCEEEEEE----eCCC---CCCccChhhcchHHHHHH-HHHCCCCEEEEeccccccC-CCCCC
Confidence 3466778889999999999999751 5688 99 9997766666 7889999999999999999 89999
Q ss_pred ccEEEEcceeeccCCCCCCCcccCCCCc--cC-CC-CChhHh---------hcCcceEEEE---eecCceecChHhHHHH
Q 027878 78 GDVFLISDVAFHDRRIPIPVFDLYGVGQ--RQ-AF-STPNLL---------RELNLKVCKL---STGDSLDMSSQDETSI 141 (217)
Q Consensus 78 GDvvi~~~~~~~d~~~~~p~f~~y~~g~--~p-~~-~~~~l~---------~~~~~~~G~i---~Sgd~~~~~~~~~~~l 141 (217)
||+||++++++++.+.....|+....+. .+ .+ .|++|. .+++++.|.+ .+||+|.+.++. +.+
T Consensus 95 GDiVi~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~ggvy~~~~Gp~fet~ae~-~~~ 173 (261)
T PRK08666 95 GDFVILDQFLDFTKNRHYTFYDGGESGVVHVDFTDPYCPELRKALITAARELGLTYHPGGTYVCTEGPRFETAAEI-RMF 173 (261)
T ss_pred CCEEeehhhhhcCCCCCccccCCCCCCcCCCCCCcccCHHHHHHHHHHHHHCCCceEeccEEEEeeCCCcCCHHHH-HHH
Confidence 9999999999988753211121111111 11 11 245553 1467777544 779999776654 567
Q ss_pred HhCCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027878 142 TANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVIDFIN 210 (217)
Q Consensus 142 ~~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~--~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~ 210 (217)
+++|+++||||+++++++|+++|+|+++|+.|||+++. +.+ +|++|...++++++.+.+.+..+++.+.
T Consensus 174 ~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~~~~~~ 245 (261)
T PRK08666 174 RILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAGISPTKLTHSEVVELMAQNSENIKKLIMKAIELIP 245 (261)
T ss_pred HHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999999999999983 334 8999999999999999999999999885
No 23
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.96 E-value=6.1e-28 Score=202.40 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=135.8
Q ss_pred EEEEEEEcceeEEEeeeeeEeeCCCCc----CHHHHHHHH-HHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceee
Q 027878 14 TCTQQEYEIHDLFFANLNLILSEVDSV----GTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~~G~~gv----G~~~Aa~~~-~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~ 88 (217)
.++.|++++++|.+ +.+| + |+++++++. .+|+.+|+++.||++|+|||++ +++++||+|+++++++
T Consensus 42 ~~~~G~i~g~~Vv~-----~~~~---iH~~~Gk~~a~i~~~~~ll~~~gv~~II~~gsaGsl~-~~l~~GDiVi~~d~i~ 112 (249)
T TIGR01700 42 NLVFGILGGKPVVA-----MQGR---FHMYEGYDMAKVTFPVRVMKLLGVETLVVTNAAGGIN-PEFKVGDLMLIRDHIN 112 (249)
T ss_pred cEEEEEECCEEEEE-----EcCC---ccccCCcCHHHccHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhHhh
Confidence 48999999999998 7777 8 999999995 9999999999999999999999 8999999999999999
Q ss_pred ccCCCCCCCcccCCCC-ccCC---CCChhHh---------hcCcceEEE--EeecCceecChHhHHHHHhCCCcEEcccc
Q 027878 89 HDRRIPIPVFDLYGVG-QRQA---FSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEG 153 (217)
Q Consensus 89 ~d~~~~~p~f~~y~~g-~~p~---~~~~~l~---------~~~~~~~G~--i~Sgd~~~~~~~~~~~l~~~~a~~vdME~ 153 (217)
++.......++.-.++ +.|. ..|++|. .+.+++.|+ +.|||+|.+.++. +.++++++++||||+
T Consensus 113 ~~~~~~l~g~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~G~y~~~sGp~F~t~aE~-~~~~~~gad~V~Me~ 191 (249)
T TIGR01700 113 LPGFNPLRGPNEERFGVRFPDMSDAYDRDLRQKAHSIAKQLNIPLQEGVYVMLGGPSYETPAEV-RLLRTLGADAVGMST 191 (249)
T ss_pred CCCCCCccCCCCcCCCCeeCCCCcccCHHHHHHHHHHHHHcCCccceEEEEEeeCCCcCCHHHH-HHHHHcCCCEEecch
Confidence 8863210011100011 1121 2355553 146788998 8999999976655 567789999999999
Q ss_pred hHHHHHHHhCCCCEEEEEeeecCCCC--CCc-cHHHHHH-HHHHHHHHHHHHHH
Q 027878 154 AAVAYVADLFKVPALFVKAVTDLVDG--DKP-TAEEFMQ-NLVAVTAALEQSVS 203 (217)
Q Consensus 154 aava~~a~~~~ip~~~ir~ISD~~~~--~~~-~~~~~~~-~~~~a~~~~~~~l~ 203 (217)
++++++|+++|+|+++||.|||+++. +.+ +|.++.. .++++++.+.+.+.
T Consensus 192 aaea~~A~~~gv~~~~i~~vsd~a~~~~~~~~~~~~~v~~~~~~~~~~~~~ll~ 245 (249)
T TIGR01700 192 VPEVIVARHCGLRVFGFSLITNKAAGILDYELSVHEEVMEAAKQAAEKLEKFVS 245 (249)
T ss_pred HHHHHHHHHcCCcEEEEEEEeecccccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 333 6444443 33333433333333
No 24
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.96 E-value=1.9e-27 Score=199.86 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=119.6
Q ss_pred eeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcccCCCCccCCCC
Q 027878 31 NLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS 110 (217)
Q Consensus 31 ~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~~y~~g~~p~~~ 110 (217)
.++.+| ||+++|+++++.|+..++|+.||++|+||||+ +++++||+||++.++++|.. . ..|.++..|..|
T Consensus 63 tv~~~G---vG~psAai~~eeL~~~~G~k~iIriGtcG~L~-~~i~iGDiVI~~aAir~dgt-s----~~Y~p~~~p~~~ 133 (266)
T TIGR01721 63 SIIDFK---LGSPGAALIXDLCSFLPHPKAAIMLGMCGGLR-SHYQVGDYFVPVASIRGEGT-S----DAYFPPEVPALA 133 (266)
T ss_pred EEEECC---CCHHHHHHHHHHHHHhcCCCEEEEEEeccCCC-CCCCCCCEEEEcceEeccCc-h----hhcCCcccCCCC
Confidence 339999 99999999999887778999999999999999 79999999999999977753 2 257677777777
Q ss_pred ChhHh---------hcCcceEEEEeecCc-eecC-hHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCC
Q 027878 111 TPNLL---------RELNLKVCKLSTGDS-LDMS-SQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDG 179 (217)
Q Consensus 111 ~~~l~---------~~~~~~~G~i~Sgd~-~~~~-~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~ 179 (217)
+..+. .+.+++.|+++|+|. |+.. .+.++.+++.++++||||+|+++++|+.+++|+.+|+.|||.+..
T Consensus 134 d~~l~~~l~~a~~~~g~~~~~G~v~TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ava~~~~vp~~~il~VSD~~~~ 213 (266)
T TIGR01721 134 NFVVQKAITSALENKGKDYHIGITHTTNIRFWEFNKKFRDKLYETKAQGVEMECATLFTAGYRRNLPXGALLLISDLPLR 213 (266)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEEEcCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 76543 257899999999997 5543 344566777899999999999999999999999999999999865
Q ss_pred CC
Q 027878 180 DK 181 (217)
Q Consensus 180 ~~ 181 (217)
..
T Consensus 214 ~e 215 (266)
T TIGR01721 214 PE 215 (266)
T ss_pred CC
Confidence 43
No 25
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.96 E-value=1.7e-27 Score=198.94 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=145.1
Q ss_pred cEEEEEEEcceeEEEeeeeeEeeCCCCcCH------HHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcce
Q 027878 13 HTCTQQEYEIHDLFFANLNLILSEVDSVGT------ISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (217)
Q Consensus 13 ~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~------~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~ 86 (217)
.++|.|++++++|.+. ..+| +|+ +|+++.++.| .+++++.||++|+||+++ +++++||+||++++
T Consensus 33 ~~~~~G~~~g~~vv~~----~~~G---~g~~~~~~~vn~~a~~~~L-~~~Gv~~iI~~GsaG~l~-~~l~~GDlVI~~~~ 103 (241)
T TIGR01694 33 APIVVGRVAGVDVAFL----PRHG---RGHDIPPHEVNYRANIWAL-KSLGVKYVISVNAVGSLR-EEYPPGDLVVPDQF 103 (241)
T ss_pred CCEEEEEECCEEEEEE----eCCC---CCCccChHHCCcHHHHHHH-HHcCCCEEEEeccccccC-CCCCCCCEEEEhhH
Confidence 4699999999998862 4568 999 9888877777 789999999999999999 89999999999999
Q ss_pred eeccCCCCCCCcccCCCCcc--CCCCChhHh---------hcCcce-EEEEe--ecCceecChHhHHHHHhCCCcEEccc
Q 027878 87 AFHDRRIPIPVFDLYGVGQR--QAFSTPNLL---------RELNLK-VCKLS--TGDSLDMSSQDETSITANDATIKDME 152 (217)
Q Consensus 87 ~~~d~~~~~p~f~~y~~g~~--p~~~~~~l~---------~~~~~~-~G~i~--Sgd~~~~~~~~~~~l~~~~a~~vdME 152 (217)
++++.+.....|+....++. |..+|++|. .+++++ .|.++ +||.|.+.++ .++++++|+++||||
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~~G~~~~~~G~~f~t~~e-~~~~~~~Ga~aVeME 182 (241)
T TIGR01694 104 IDRTSGRPSTFFDGGKVVHVDFGDPYCEDLRQRLIESLRRLGLTVHDGGTYVCTEGPRFSTRAE-SRMFKSWGADIVGMT 182 (241)
T ss_pred hhccCCCCCccCCCCccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEeceEEEeCcCCCcCCHHH-HHHHHHcCCeEEecc
Confidence 98886522111211001111 112455553 146778 79888 7779976544 467778999999999
Q ss_pred chHHHHHHHhCCCCEEEEEeeecCCCC--CCc-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 153 GAAVAYVADLFKVPALFVKAVTDLVDG--DKP-TAEEFMQNLVAVTAALEQSVSQVID 207 (217)
Q Consensus 153 ~aava~~a~~~~ip~~~ir~ISD~~~~--~~~-~~~~~~~~~~~a~~~~~~~l~~~l~ 207 (217)
+++++++|+++|+|+++|+.|||.++. +.+ ++++|...+++..+.+.+.+..+|.
T Consensus 183 ~aa~~~vA~~~gv~~~~i~~Vsd~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (241)
T TIGR01694 183 GVPEAVLARELELCYATLALVTDYDCWISADHVTAEEVEEVMGENVEKAKRILLEAIK 240 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998873 334 8999999999999888888887764
No 26
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.96 E-value=3.7e-27 Score=199.99 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=152.1
Q ss_pred cEEEEEEEcceeEEEeeeeeEeeCCCCc----CHHHHHHHHH-HHHHhcCCCEEEEEeeecccCCCCCCcccEEEEccee
Q 027878 13 HTCTQQEYEIHDLFFANLNLILSEVDSV----GTISASLVTY-ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (217)
Q Consensus 13 ~~~~~G~~~~~~v~~~~v~~~~~G~~gv----G~~~Aa~~~~-~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~ 87 (217)
-+++.|++++++|.+ +.+| + |++++++++. +++.+++++.||++|+|||++ +++++||+||+++++
T Consensus 63 ~~~~~G~l~g~~Vv~-----~~g~---~H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL~-~~l~~GDiVi~~d~i 133 (272)
T PRK08202 63 GELVLGRLGGKPVLA-----MQGR---FHYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLN-PDFGPGDLMLISDHI 133 (272)
T ss_pred ceEEEEEECCEEEEE-----EccC---CcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEchhh
Confidence 359999999999998 7766 8 9999999886 699999999999999999999 899999999999999
Q ss_pred eccCCCCCCCcccCCCC-ccCCC---CChhHh---------hcCcceEEEE--eecCceecChHhHHHHHhCCCcEEccc
Q 027878 88 FHDRRIPIPVFDLYGVG-QRQAF---STPNLL---------RELNLKVCKL--STGDSLDMSSQDETSITANDATIKDME 152 (217)
Q Consensus 88 ~~d~~~~~p~f~~y~~g-~~p~~---~~~~l~---------~~~~~~~G~i--~Sgd~~~~~~~~~~~l~~~~a~~vdME 152 (217)
+++.......++.-..+ ..+.+ .|++|. .+++++.|++ .+||+|.+.++. +.++.+|+++|+||
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~G~y~~~~Gp~feT~aE~-~~~~~~Gad~VgMe 212 (272)
T PRK08202 134 NLTGRNPLIGPNDDEFGPRFPDMSDAYDPELRALAKKVAKELGIPLQEGVYVGVSGPSYETPAEI-RMLRTLGADAVGMS 212 (272)
T ss_pred hhCCCCcccCCCcccCCCccCCCCcccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEecC
Confidence 98764321111100011 11111 255553 1467889987 999999988874 56777899999999
Q ss_pred chHHHHHHHhCCCCEEEEEeeecCCCCC--Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027878 153 GAAVAYVADLFKVPALFVKAVTDLVDGD--KP-TAEEFMQNLVAVTAALEQSVSQVIDFI 209 (217)
Q Consensus 153 ~aava~~a~~~~ip~~~ir~ISD~~~~~--~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~ 209 (217)
+++++++|+++|+||++||.|||++.+. .+ +++++...++.++..+.+.+..+|+.+
T Consensus 213 ~~~ea~lA~~~gi~~~~i~~Vsd~a~~~~~~~~~~~ev~~~~~~~~~~~~~l~~~~i~~~ 272 (272)
T PRK08202 213 TVPEVIVARHCGLKVLGISCITNLAAGISDEPLSHEEVLEVAERAAPKFGRLVKAILARL 272 (272)
T ss_pred hHHHHHHHHHCCCcEEEEEEEeccCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999863 34 899999999999999999998888653
No 27
>PRK08292 AMP nucleosidase; Provisional
Probab=99.96 E-value=4.3e-27 Score=209.62 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=123.9
Q ss_pred EEecCcEEEEEE-EcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcce
Q 027878 8 IDVVGHTCTQQE-YEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (217)
Q Consensus 8 ~~~~g~~~~~G~-~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~ 86 (217)
+...+.++|.+. ..|++|++ +.+| |||+||+++++.| ..++|+.||++|+|||++ +++++||+||++.+
T Consensus 260 ~~~~~mp~y~l~~~~G~~Vtv-----vssG---IGpsnAA~ateeL-a~lgpd~iIriGtAGgL~-~~lkiGDvVIA~aa 329 (489)
T PRK08292 260 WRLPQMPAYHLIRADGQGITL-----VNIG---VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-NSQRIGDYVLAHAY 329 (489)
T ss_pred hhccCCcceEeeccCCceEEE-----EEcC---CCHHHHHHHHHHH-HHcCCCEEEEEEehhcCC-CCCCCCCEEEECce
Confidence 346677777655 45688888 9999 9999999888765 568999999999999999 79999999999999
Q ss_pred eeccCCCCCCCcccCCCCccCCCCCh----hHh---h----------cCcceEEEEeecCceecCh---HhHHHHHhCCC
Q 027878 87 AFHDRRIPIPVFDLYGVGQRQAFSTP----NLL---R----------ELNLKVCKLSTGDSLDMSS---QDETSITANDA 146 (217)
Q Consensus 87 ~~~d~~~~~p~f~~y~~g~~p~~~~~----~l~---~----------~~~~~~G~i~Sgd~~~~~~---~~~~~l~~~~a 146 (217)
+++|... +.|.+++.|..++. .|. + +.+++.|+++|+|.|++.. +.++++++.++
T Consensus 330 vr~DGt~-----d~~~p~evPa~a~~el~~aL~~aa~ev~~~~g~elg~~~h~G~V~SgD~F~~e~~~~~l~~~~~~~gA 404 (489)
T PRK08292 330 LRDDHVL-----DAVLPPWIPIPAIAEVQVALEDAVAEVTGLPGEELKRRMRTGTVVTTDDRNWELRYSASALRFNQSRA 404 (489)
T ss_pred EeCCccc-----ccccccccCcCCcHHHHHHHHHHHHHHhhhcccccCCceEEEEEEecCcCCCcCchHHHHHHhhhcCC
Confidence 9988532 12323334432221 111 0 3579999999999997543 33445556699
Q ss_pred cEEcccchHHHHHHHhCCCCEEEEEeeecCCCCCC
Q 027878 147 TIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK 181 (217)
Q Consensus 147 ~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~ 181 (217)
+++|||+|+++++|+++++|+.+||+|||...+..
T Consensus 405 lAVEMESAALa~va~~~gVP~gaIr~VSD~~~~~E 439 (489)
T PRK08292 405 VALDMESATIAANGYRFRVPYGTLLCVSDKPLHGE 439 (489)
T ss_pred EEEehhHHHHHHHHHHhCCCEEEEEEEEecCCCCC
Confidence 99999999999999999999999999999987643
No 28
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.95 E-value=1.2e-26 Score=206.18 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=123.6
Q ss_pred EecCcEEEE-EEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEccee
Q 027878 9 DVVGHTCTQ-QEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (217)
Q Consensus 9 ~~~g~~~~~-G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~ 87 (217)
...+.++|. +..++++|++ +.+| ||++||+++++.| ..++|+.+|++|+|||++ +++++||+||++.++
T Consensus 249 ~~~~mp~Y~l~~~~g~~Itv-----vstG---IGpsnAaaiteeL-a~lgp~~iI~iGscGgL~-~~ikiGDlVIataAv 318 (477)
T TIGR01717 249 KRHQMPAYHLITADGDGITL-----VNIG---VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-ESQRIGDYVLAHAYL 318 (477)
T ss_pred ccCCCceEEEEeeCCceEEE-----EECC---CCHHHHHHHHHHH-HHcCCCEEEEEEccccCC-CCCCCCCEEEEeeEE
Confidence 356677666 6677888888 9999 9999999987775 669999999999999999 799999999999999
Q ss_pred eccCCCCCCCcccCCCCccCCCCChhH----h---h----------cCcceEEEEeecCceec---ChHhHHHHHhCCCc
Q 027878 88 FHDRRIPIPVFDLYGVGQRQAFSTPNL----L---R----------ELNLKVCKLSTGDSLDM---SSQDETSITANDAT 147 (217)
Q Consensus 88 ~~d~~~~~p~f~~y~~g~~p~~~~~~l----~---~----------~~~~~~G~i~Sgd~~~~---~~~~~~~l~~~~a~ 147 (217)
++|.... .|.+...|..++..+ . + +.+++.|+++|+|.|++ +.+..++++..+++
T Consensus 319 R~DGtsd-----~ylp~~~Papa~~~l~~aL~~Aa~~~~g~~g~el~~~~h~G~V~StD~F~~el~~~~~~~~l~~~gAl 393 (477)
T TIGR01717 319 REDHVLD-----AVLPPDIPIPAIAEVQRALEDAVAEVTGRPGEELKRRLRTGTVLTTDDRNWELRYSASALRLNLSRAI 393 (477)
T ss_pred ecCcchh-----hhcccccCCCCcHHHHHHHHHHHHHhhcccccccCCceEEEEEEecCcCcccCCCHHHHHHHHhCCCE
Confidence 8885321 232222332222211 1 1 23689999999999863 45555566667999
Q ss_pred EEcccchHHHHHHHhCCCCEEEEEeeecCCCCCC
Q 027878 148 IKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK 181 (217)
Q Consensus 148 ~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~ 181 (217)
++|||+|+++++|+.+++|+.+||+|||...+..
T Consensus 394 AVEMESAALaava~~~gVP~gaLr~VSD~~l~~E 427 (477)
T TIGR01717 394 AVDMESATIAAQGYRFRVPYGTLLCVSDKPLHGE 427 (477)
T ss_pred EEehhHHHHHHHHHHhCCCEEEEEEEEEcCCCCC
Confidence 9999999999999999999999999999987653
No 29
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.95 E-value=4.5e-27 Score=192.91 Aligned_cols=159 Identities=22% Similarity=0.266 Sum_probs=120.9
Q ss_pred eEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcccCCCCccCCCC-
Q 027878 32 LILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFS- 110 (217)
Q Consensus 32 ~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~~y~~g~~p~~~- 110 (217)
++.+| ||+++|+.+++.|+ +++|+.||++|+|||++ +++++||+|+++++.+++ .. | .. .+.+.
T Consensus 24 ~~~sG---iG~~~aa~~~~~l~-~~~~~~vI~~G~aG~l~-~~l~~Gdvvi~~~~~~~g--~~---~---~~--d~~l~~ 88 (212)
T TIGR03468 24 VCLSG---GGPERARAAAARLM-AAGAAGLVSFGTAGALD-PALQPGDLVVPEEVRADG--DR---F---PT--DPAWRR 88 (212)
T ss_pred EEEcC---CCHHHHHHHHHHHH-HcCCCEEEEEEecccCC-CCCCCCCEEeehhheeCC--Ce---e---cC--CHHHHH
Confidence 38899 99999999999995 79999999999999999 899999999999976542 21 1 10 01000
Q ss_pred --ChhHhhcCcceEEEEeecCceecChHhHHHHH-hCCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCCCCccHHHH
Q 027878 111 --TPNLLRELNLKVCKLSTGDSLDMSSQDETSIT-ANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEF 187 (217)
Q Consensus 111 --~~~l~~~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~ 187 (217)
...+..+++++.|+++|+|.|+.+++.++++. .+++++||||+++++++|+.+++||++||+|||.++++.+ .+|
T Consensus 89 ~l~~~l~~~~~~~~G~~~t~d~~~~~~~~~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~~~--~~~ 166 (212)
T TIGR03468 89 RLLEALPAGLRVHRGVLAASDTVVSTAAAKAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRALP--RAA 166 (212)
T ss_pred HHHHHHHhCCCeEEEEEEEeCeEecCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCcCc--hhH
Confidence 00111245789999999999999887777775 5899999999999999999999999999999999998876 334
Q ss_pred HHHH-HHHHHHHHHHHHHHHH
Q 027878 188 MQNL-VAVTAALEQSVSQVID 207 (217)
Q Consensus 188 ~~~~-~~a~~~~~~~l~~~l~ 207 (217)
.... ..........+..+++
T Consensus 167 ~~~~~~~g~~~~~~ll~~l~~ 187 (212)
T TIGR03468 167 LDALRPDGSTALAALLRGLLR 187 (212)
T ss_pred HHhcCcccCccHHHHHHHHHh
Confidence 3333 3333444444444444
No 30
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.95 E-value=3.2e-26 Score=195.41 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=121.3
Q ss_pred ecCcEEEE---EEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHh-----cCCCEEEEEeeecccCCCCCCcccEE
Q 027878 10 VVGHTCTQ---QEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQA-----LKPDLIINAGTAGGFKAKGASIGDVF 81 (217)
Q Consensus 10 ~~g~~~~~---G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~-----~~~~~ii~~G~aG~l~~~~~~~GDvv 81 (217)
++++..|+ |.|+|.+|++ +.|| ||++||++++++|+.. .+++.||++|+|||+ ++++||+|
T Consensus 62 ~r~~~~~t~r~g~ykg~~V~v-----~stG---IG~psaaI~~~ELi~~~~~~~~~~~~IIRiGtaG~l---~i~iGDvV 130 (287)
T TIGR01719 62 YPNISERGDRFAMYKVGPVLC-----VSHG---MGIPSISIMLHELIKLLYYARCKNPTFIRIGTSGGI---GVPPGTVV 130 (287)
T ss_pred ceeeeeeccccEEEccEEEEE-----EecC---CCcchHHHHHHHHHHhhhhcCCCCceEEEEeccccC---CCCCCCEE
Confidence 44444444 8999999999 9999 9999999999999985 355699999999999 39999999
Q ss_pred EEcceeeccCCCCCCCcccCCCCc---cCCCCChhHh-----------hcCcceEEEEeecCceecC-------------
Q 027878 82 LISDVAFHDRRIPIPVFDLYGVGQ---RQAFSTPNLL-----------RELNLKVCKLSTGDSLDMS------------- 134 (217)
Q Consensus 82 i~~~~~~~d~~~~~p~f~~y~~g~---~p~~~~~~l~-----------~~~~~~~G~i~Sgd~~~~~------------- 134 (217)
|++.++++|.+.. +..+..+. .|..+|++|. .+.+++.|.++|+|.|+.+
T Consensus 131 Iat~a~~~d~~~~---~~~~~~~~~~~~~~~aD~~L~~~l~~aa~~~~~~~~~~~G~i~S~D~Fy~~q~r~~~~~~~~~~ 207 (287)
T TIGR01719 131 VSSEAVDACLKPE---YEQIVLGKRVIRPTQLDEALVQELLLCGAEGLDEFTTVSGNTMCTDDFYEGQGRLDGAFCEYTE 207 (287)
T ss_pred EEchhhhcccCch---HhhcccCCCcccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEEccCCcccCCCCcccccccccch
Confidence 9999998875321 21222211 1333565553 1367999999999999986
Q ss_pred hHhHHHHH---hCCCcEEcccchHHHHHHHhCCCCEEEEE-eeecCCCCC
Q 027878 135 SQDETSIT---ANDATIKDMEGAAVAYVADLFKVPALFVK-AVTDLVDGD 180 (217)
Q Consensus 135 ~~~~~~l~---~~~a~~vdME~aava~~a~~~~ip~~~ir-~ISD~~~~~ 180 (217)
.+..+.++ +++++++|||++|++++|+.+|+|+++|+ +++|..+++
T Consensus 208 ~~~~~~i~~~~~~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~~~ 257 (287)
T TIGR01719 208 KDKMAYLRKLYALGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLEGD 257 (287)
T ss_pred hhhHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEeeeccccCC
Confidence 22233333 45999999999999999999999999999 778876665
No 31
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.94 E-value=8.6e-26 Score=181.06 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=134.0
Q ss_pred EecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceee
Q 027878 9 DVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (217)
Q Consensus 9 ~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~ 88 (217)
+++|...|+|+|+|++|.+ ..+| ||.++..+.+.+|+..|+++.||++|+||+++ ++++++|+||+..++
T Consensus 42 evR~mlgfTGtYKGk~iSv-----mg~G---mGipS~sIY~~ELi~~y~Vk~iIRvGt~Gal~-~~v~l~DvVia~~A~- 111 (236)
T COG0813 42 EVRGMLGFTGTYKGKKISV-----MGHG---MGIPSISIYSRELITDYGVKKIIRVGTCGALS-EDVKLRDVVIAQGAS- 111 (236)
T ss_pred hhcchhcccceecCcEEEE-----EEec---CCCccHHHHHHHHHHHhCcceEEEEEcccccc-CCcccceEEEecccc-
Confidence 6789999999999999999 8999 99999999999999999999999999999999 899999999999875
Q ss_pred ccCCCCCCCcccCCCCccCCCCChhHh---------hcCcceEEEEeecCceecC-hHhHHHHHhCCCcEEcccchHHHH
Q 027878 89 HDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMS-SQDETSITANDATIKDMEGAAVAY 158 (217)
Q Consensus 89 ~d~~~~~p~f~~y~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~~~-~~~~~~l~~~~a~~vdME~aava~ 158 (217)
.|+....-.|.++. .+..||.+|+ .+.++|.|.+.|+|.|+.+ ++..+.+.++|+++||||++|++.
T Consensus 112 tds~~~~~~f~~~d---f~~~ad~~Ll~~a~~~A~e~gi~~hvgnv~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY~ 188 (236)
T COG0813 112 TDSNVNRIRFKPHD---FAPIADFELLEKAYETAKELGIDTHVGNVFSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALYA 188 (236)
T ss_pred CcchhhhcccCccc---ccccCCHHHHHHHHHHHHHhCCceeeeeeeeeecccCCCHHHHHHHHHhCCcEEEeeHHHHHH
Confidence 55533211121111 1224566665 2688999999999999976 455566778999999999999999
Q ss_pred HHHhCCCCEEEEEeeecCCCCC
Q 027878 159 VADLFKVPALFVKAVTDLVDGD 180 (217)
Q Consensus 159 ~a~~~~ip~~~ir~ISD~~~~~ 180 (217)
+|.++|...+.|..|||+.-..
T Consensus 189 ~A~~~~~~Al~ilTVSD~l~t~ 210 (236)
T COG0813 189 VAAEYGKKALTILTVSDHLVTG 210 (236)
T ss_pred HHHHhCcceEEEEEeeccccCc
Confidence 9999999999999999998644
No 32
>PRK07077 hypothetical protein; Provisional
Probab=99.94 E-value=5.1e-25 Score=182.65 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=114.1
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCCCCCCCcccCCCCccCCCCCh
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTP 112 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~~p~f~~y~~g~~p~~~~~ 112 (217)
+..| .|+..++...+ ++...+|+.||++|+|||++ +++++||+||++++++++. . |... +.+. .
T Consensus 33 ~~~g---~~~~~~~a~~~-~~~~~~~~~vIs~G~AGgL~-p~l~vGDvVva~~v~~~~g--~------~~~d--~~l~-~ 96 (238)
T PRK07077 33 VCAA---RADRLERALLA-AFDARGCAGIVSFGVAGGLD-PDLAPGDLVVATAVDAPFG--R------VDTD--ARWS-A 96 (238)
T ss_pred EecC---CCHHHHHHHHH-HHHhcCCCEEEEEEeccccC-CCCCCCcEEEEeeeecCCC--c------CcCC--HHHH-H
Confidence 6667 78877777666 66678999999999999999 8999999999999875442 1 1110 0000 0
Q ss_pred hH---hh----cCcceEEEEeecCceecChHhHHHHHh-CCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCC------
Q 027878 113 NL---LR----ELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVD------ 178 (217)
Q Consensus 113 ~l---~~----~~~~~~G~i~Sgd~~~~~~~~~~~l~~-~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~------ 178 (217)
.+ ++ ..+++.|+++|+|.|+.+.+.++.|++ +++.+||||+++++++|+++++||++||+|||.++
T Consensus 97 ~l~~~l~~~~~~~~v~~G~i~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~~~LP~~ 176 (238)
T PRK07077 97 RLAAALELTPVARRVVRGGLAGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAWRTLPAA 176 (238)
T ss_pred HHHHHHHhccCCCceEEEEEEecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccCccCchh
Confidence 11 11 246899999999999999988888874 79999999999999999999999999999999999
Q ss_pred ------CCCc-cHHHHHHHHHHHHHH
Q 027878 179 ------GDKP-TAEEFMQNLVAVTAA 197 (217)
Q Consensus 179 ------~~~~-~~~~~~~~~~~a~~~ 197 (217)
++.. ++..+.....+....
T Consensus 177 ~~~~~~~~g~~~~~~~l~~l~r~P~~ 202 (238)
T PRK07077 177 ATAGLRDDGSTDILPILRGLARQPSQ 202 (238)
T ss_pred HHhhcCCCcCcCHHHHHHHHHhChHH
Confidence 4443 566666554444433
No 33
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.92 E-value=5.7e-24 Score=172.89 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=133.7
Q ss_pred EecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceee
Q 027878 9 DVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (217)
Q Consensus 9 ~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~ 88 (217)
..+.++.|+|+|++.+|.+ +.|| ||.++|+++.++|.. .+.+.+|.+|++|++. +++++||+||++..+.
T Consensus 44 ~~Ref~~~~g~~~g~~v~v-----~StG---IGgPSaaIAvEEL~~-lGa~tfiRVGT~Galq-~~i~~Gdvvi~tgAvr 113 (248)
T COG2820 44 SNREFRTYTGTYNGKPVTV-----CSTG---IGGPSAAIAVEELAR-LGAKTFIRVGTTGALQ-PDINVGDVVVATGAVR 113 (248)
T ss_pred hccceEEEEEEEcCeEEEE-----EecC---CCCchHHHHHHHHHh-cCCeEEEEeecccccc-CCCCCCCEEEeccccc
Confidence 3567899999999999999 9999 999999999999965 7999999999999999 8999999999999998
Q ss_pred ccCCCCCCCcccCCCCccCCCCChhHh---------hcCcceEEEEeecCcee-----------c-ChHhHHHHHhCCCc
Q 027878 89 HDRRIPIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLD-----------M-SSQDETSITANDAT 147 (217)
Q Consensus 89 ~d~~~~~p~f~~y~~g~~p~~~~~~l~---------~~~~~~~G~i~Sgd~~~-----------~-~~~~~~~l~~~~a~ 147 (217)
.|. .+ .+|.+.+.|..|+..+. .+.++|.|++.|+|.|+ . .++..+.|++.|..
T Consensus 114 ~dG-~s----~~y~~~~~PAv~d~~~t~al~~aa~~~~~~~~vG~v~S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~gv~ 188 (248)
T COG2820 114 LDG-AS----KHYAPEEFPAVADFELTNALVEAAESLGVTVHVGVVASSDAFYGQERYYSGFVTPEFKESWEEWQDLGVL 188 (248)
T ss_pred ccc-cc----ccccCCCCCCCCCHHHHHHHHHHHHhcCCceEEEEEeecccccccccccccccCcchHHHHHHHHHcCch
Confidence 886 32 24655556666665442 24788999999999999 3 24556777888999
Q ss_pred EEcccchHHHHHHHhCCCCEEEEEe-eecCCCCCC
Q 027878 148 IKDMEGAAVAYVADLFKVPALFVKA-VTDLVDGDK 181 (217)
Q Consensus 148 ~vdME~aava~~a~~~~ip~~~ir~-ISD~~~~~~ 181 (217)
.+|||+++++.+|+..|++..++.. |+|..+.+.
T Consensus 189 ~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~e~ 223 (248)
T COG2820 189 NIEMESATLFTLGSLRGLRAGAVLGVIANRTQGEQ 223 (248)
T ss_pred hhHHHHHHHHHHHHHcCcccccEEEEEcccccccc
Confidence 9999999999999999999777777 899887654
No 34
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.92 E-value=1.2e-23 Score=175.76 Aligned_cols=180 Identities=10% Similarity=0.111 Sum_probs=145.5
Q ss_pred EEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHH------HhcCCCEEEEEeeecccCCCCCCcccEEEEccee
Q 027878 14 TCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASI------QALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li------~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~ 87 (217)
.++.|+++|++|.+ .+| .|+.+++..++.++ .+++++.||++|.+||++ +++++||+|++++.+
T Consensus 42 ~l~~G~l~g~~Vv~------~~G---r~h~y~g~~~~~~~~~i~~l~~lGv~~iI~t~aaG~l~-~~l~~Gdlvi~~d~i 111 (248)
T TIGR01699 42 ELVLGHLQGVPVVC------MKG---RGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLR-PEVGAGSLVALKDHI 111 (248)
T ss_pred eEEEEEECCEEEEE------EeC---CCcccCCcchhhhcchHHHHHHcCCCEEEEecceeccC-CCCCCCCEECHHHHh
Confidence 48999999999887 468 99999888888777 899999999999999999 899999999999999
Q ss_pred eccCCCCCCCcccCCCCccCCC------CChhHh---------hcCcceEEEEee--cCceecChHhHHHHHhCCCcEEc
Q 027878 88 FHDRRIPIPVFDLYGVGQRQAF------STPNLL---------RELNLKVCKLST--GDSLDMSSQDETSITANDATIKD 150 (217)
Q Consensus 88 ~~d~~~~~p~f~~y~~g~~p~~------~~~~l~---------~~~~~~~G~i~S--gd~~~~~~~~~~~l~~~~a~~vd 150 (217)
++..+...-.++.-..+ +.+ -|++|. .+++++.|+.++ ||+|.+.+|. +.++.+|+++|+
T Consensus 112 ~~t~~~p~~~~~~~~~g--~~~~~~~~~yd~~Lr~~~~~~a~~~~~~~~~Gvy~~~~GP~FeT~AE~-r~~~~~Gad~Vg 188 (248)
T TIGR01699 112 NTMPGTPMVGLNDDRFG--ERFFSLANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAEI-RMMQIIGGDVVG 188 (248)
T ss_pred hcCCCCCccCCCcccCC--CCCCCCCCccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEc
Confidence 88543210011100011 111 145543 146788999998 9999988875 677789999999
Q ss_pred ccchHHHHHHHhCCCCEEEEEeeecCCCCCC--c-cHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 151 MEGAAVAYVADLFKVPALFVKAVTDLVDGDK--P-TAEEFMQNLVAVTAALEQSVSQVI 206 (217)
Q Consensus 151 ME~aava~~a~~~~ip~~~ir~ISD~~~~~~--~-~~~~~~~~~~~a~~~~~~~l~~~l 206 (217)
||+++.+++|+++++|+++|+.|||++.+.. + +.++..+.++++...+.+.+..++
T Consensus 189 Ms~vpEa~~A~~~g~~~~~i~~Vtn~a~g~~~~~lt~~ev~~~~~~~~~~~~~ll~~~~ 247 (248)
T TIGR01699 189 MSVVPEVISARHCDLKVVAVSAITNMAEGLSDVKLSHAQTLAAAELSKQNFINLICGFL 247 (248)
T ss_pred cchhHHHHHHHHCCCcEEEEEEEeecCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998643 3 889999999999999888887765
No 35
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.91 E-value=1.7e-22 Score=168.74 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=142.1
Q ss_pred CcEEEEEEEcceeEEEeeeeeEeeCCCCcC------HHHH--HHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 12 GHTCTQQEYEIHDLFFANLNLILSEVDSVG------TISA--SLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 12 g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG------~~~A--a~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
+.+++.|++++++|.+. ..+| .| ++|. .+.+ +.+++++.||++|.|||++ +++++||+||+
T Consensus 32 ~~~l~~G~l~g~~Vv~l----~RhG---~~h~~~~~~V~~~A~i~a---l~~lGv~~ii~t~aaG~l~-~~l~~Gdlvi~ 100 (245)
T PRK09136 32 SGPLTFGTLAGREVVFL----ARHG---HGHTIPPHKVNYRANIWA---LKQAGATRVLAVNTVGGIH-ADMGPGTLVVP 100 (245)
T ss_pred cccEEEEEECCEEEEEE----ecCC---CCCCCChHHcCcHHHHHH---HHHcCCCEEEEecccccCC-CCCCCCCEEEE
Confidence 56799999999999863 3567 88 7773 4433 6889999999999999999 89999999999
Q ss_pred cceeeccCCCCCCCcccCCCCccCC----CC-ChhHh---------hcCcce-EEEEe--ecCceecChHhHHHHHhCCC
Q 027878 84 SDVAFHDRRIPIPVFDLYGVGQRQA----FS-TPNLL---------RELNLK-VCKLS--TGDSLDMSSQDETSITANDA 146 (217)
Q Consensus 84 ~~~~~~d~~~~~p~f~~y~~g~~p~----~~-~~~l~---------~~~~~~-~G~i~--Sgd~~~~~~~~~~~l~~~~a 146 (217)
+++++++.+.....|+ ++....|. .| |++|. .+++++ .|+.+ +||+| .++...+++++.|+
T Consensus 101 ~d~i~~~~~~p~t~~~-~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~f-eT~AE~r~lr~~Ga 178 (245)
T PRK09136 101 DQIIDYTWGRKSTFFE-GDGEEVTHIDFTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRL-ETAAEIARLERDGC 178 (245)
T ss_pred HHHhhccCCCCCCCCC-CCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCc-CCHHHHHHHHHcCC
Confidence 9999888753212232 22111221 12 45553 145666 58776 99999 66666788888999
Q ss_pred cEEcccchHHHHHHHhCCCCEEEEEeeecCCCCCC----ccHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 147 TIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK----PTAEEFMQNLVAVTAALEQSVSQVI 206 (217)
Q Consensus 147 ~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~----~~~~~~~~~~~~a~~~~~~~l~~~l 206 (217)
++|+||+++.+++|+++|+|+++|+.|||++.... .+++++.+.++++++++.+.+..+|
T Consensus 179 d~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~~~~~~~~~~ev~~~~~~~~~~~~~l~~~~i 242 (245)
T PRK09136 179 DLVGMTGMPEAALARELGLPYACLALVANWAAGRGDSAEITMAEIEAALDAAMGRVRELLERLV 242 (245)
T ss_pred CEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999997642 2789999999999999888887765
No 36
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=99.63 E-value=5.6e-14 Score=119.63 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=138.5
Q ss_pred EEEEEEEcceeEEEeeeeeEe-eCCCCcCHHHHH----HHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceee
Q 027878 14 TCTQQEYEIHDLFFANLNLIL-SEVDSVGTISAS----LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~-~G~~gvG~~~Aa----~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~ 88 (217)
.+..|+++|.+|.+ +. +|+ ....... -+--++++..+++.||.++.|||++ +++++||++++++.++
T Consensus 38 ~l~~G~l~G~~V~~-----l~RhGr--~H~y~p~~i~~rAni~alk~lGv~~ii~tnA~Gsln-~~~~pGd~vi~~D~In 109 (289)
T PRK08931 38 ALLFGRLGGVPMVF-----LPRHGR--GHRLSPSDINYRANIDALKRAGVTDIVSLSACGSFR-EELPPGTFVIVDQFID 109 (289)
T ss_pred cEEEEEECCEEEEE-----EeCCCC--CCccChHHcccHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEeehhhhc
Confidence 58899999999988 43 562 2211111 1134577889999999999999999 8999999999999987
Q ss_pred ccCCCCCCCcccCCCCccCCC-C-ChhHh-------h--cCcceE-E--EEeecCceecChHhHHHHHhCCCcEEcccch
Q 027878 89 HDRRIPIPVFDLYGVGQRQAF-S-TPNLL-------R--ELNLKV-C--KLSTGDSLDMSSQDETSITANDATIKDMEGA 154 (217)
Q Consensus 89 ~d~~~~~p~f~~y~~g~~p~~-~-~~~l~-------~--~~~~~~-G--~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~a 154 (217)
...+...+.|+.....+.+.. | +++|. + +++++. | ....|++|.+.+| .++++..|+++|.|-+.
T Consensus 110 ~t~~~~~~~~g~~~~~f~~m~~~y~~~Lr~~l~~~a~~~~~~~~~~GvYv~~~GPrfET~AE-ir~~r~~GaDvVGMStv 188 (289)
T PRK08931 110 RTFAREKSFFGTGCVAHVSMAHPVCPRLGDRLAAAARAEGITVHRGGTYLCMEGPQFSTLAE-SKLYRSWGCDVIGMTNM 188 (289)
T ss_pred cCCCCCCCccCCCcccCCCCCcccCHHHHHHHHHHHHHcCCeEecceEEEEeeCCCCCCHHH-HHHHHHcCCCEeccCcc
Confidence 654322222321100011100 1 34442 1 455563 3 4678999976555 67788899999999999
Q ss_pred HHHHHHHhCCCCEEEEEeeecCCCCC---Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027878 155 AVAYVADLFKVPALFVKAVTDLVDGD---KP-TAEEFMQNLVAVTAALEQSVSQVIDFIN 210 (217)
Q Consensus 155 ava~~a~~~~ip~~~ir~ISD~~~~~---~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~ 210 (217)
..+.+|++.|++++.|-.|+|++... .+ ++++..+.++++..++.+.+..+|+.+.
T Consensus 189 PEvilAre~Gl~~a~is~VTN~a~g~~~~~~~t~eeV~~~~~~~~~~~~~ll~~~i~~l~ 248 (289)
T PRK08931 189 PEAKLAREAEICYATVAMVTDYDCWHPDHDAVTVDAVIAVLLANADKARALVARLAPDLG 248 (289)
T ss_pred HHHHHHHHcCCceEEEEEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998542 23 8899999999999999999999999984
No 37
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=99.63 E-value=9.6e-14 Score=115.19 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=138.6
Q ss_pred EEEEEEEcceeEEEeeeee-EeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccCC
Q 027878 14 TCTQQEYEIHDLFFANLNL-ILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRR 92 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~-~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~ 92 (217)
++..|++++++|.+..-.. ..-| ..++...+--+++...+++.+|.++.+||++ +++++||++++++.+++...
T Consensus 42 ~l~~G~l~g~~V~~l~Gr~H~yeg----~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~-~~~~pGdlv~~~D~I~~t~~ 116 (237)
T TIGR01698 42 ELIRVRIGDGPVLVLGGRTHAYEG----GDARAVVHPVRTARATGAETLILTNAAGGLR-QDWGPGTPVLISDHINLTAR 116 (237)
T ss_pred eEEEEEECCEEEEEEcCCCcccCC----CcHHHhHHHHHHHHHcCCCEEEEEcccccCC-CCCCCCCEEeechhcccCCC
Confidence 5889999999998843221 1122 3455445556778889999999999999999 89999999999999876543
Q ss_pred CCCCCcccCCCCccCCCCChhHh---h--cCcceEEE--EeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCC
Q 027878 93 IPIPVFDLYGVGQRQAFSTPNLL---R--ELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKV 165 (217)
Q Consensus 93 ~~~p~f~~y~~g~~p~~~~~~l~---~--~~~~~~G~--i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~i 165 (217)
.|.+....+.....| |++|. + +++++.|+ ...|++|.+.+| .++++..|+++|-|-+...+.+|++.|+
T Consensus 117 --~pl~g~~~~d~~~~y-d~~Lr~~a~~~~~~~~~GvY~~~~GP~fET~AE-ir~~r~~GaD~VGMS~vpEvilAre~g~ 192 (237)
T TIGR01698 117 --SPLIGPRFVDLTDAY-SPRLRELAERVDPPLAEGVYAWFPGPHYETPAE-IRMAGILGADLVGMSTVPETIAARFCGL 192 (237)
T ss_pred --CCCCCCccCCCCccc-CHHHHHHHHHcCCCccCEEEEEecCCCcCCHHH-HHHHHHcCCCEeccCchHHHHHHHHCCC
Confidence 232210001101111 34443 1 45567775 678999876555 6788889999999999999999999999
Q ss_pred CEEEEEeeecCCCCCC--c-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 166 PALFVKAVTDLVDGDK--P-TAEEFMQNLVAVTAALEQSVSQVID 207 (217)
Q Consensus 166 p~~~ir~ISD~~~~~~--~-~~~~~~~~~~~a~~~~~~~l~~~l~ 207 (217)
+++.|-.|+|++.... + ++++..+.+++++.++.+.+..+|+
T Consensus 193 ~~a~is~VtN~a~g~~~~~~th~ev~~~~~~~~~~~~~ll~~~i~ 237 (237)
T TIGR01698 193 EVLGVSLVTNLAAGITGTPLSHAEVKAAGAAAGTRLAALLADIIK 237 (237)
T ss_pred cEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999996542 3 8899999999999999988888763
No 38
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=99.62 E-value=1e-13 Score=117.25 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=139.0
Q ss_pred cEEEEEEEcceeEEEeeeeeEeeCCCC---cCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeec
Q 027878 13 HTCTQQEYEIHDLFFANLNLILSEVDS---VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 89 (217)
Q Consensus 13 ~~~~~G~~~~~~v~~~~v~~~~~G~~g---vG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~ 89 (217)
-.+..|++.|++|.+. ...|+.- --.+|. .+--+.+.+.+++.||.+|.+||++ +++++||+|++++.++.
T Consensus 41 ~~l~~g~l~g~~v~~l----~RhGr~H~y~~~~i~~-~a~i~aLk~LGvk~iI~tnavGsl~-~~~~pGDlVv~~D~I~~ 114 (267)
T PRK08564 41 DNIIIGEIEGVEVAFL----PRHGRGHRIPPHKINY-RANIWALKELGVEWVIAVSAVGSLR-EDYKPGDFVIPDQFIDM 114 (267)
T ss_pred cCEEEEEECCEEEEEE----eCCCCCcccCCccCcc-hHHHHHHHHCCCcEEEEeccccccC-CCCCCCCEEeehhhhcc
Confidence 3577799999998883 1234100 022343 2334666889999999999999999 89999999999999876
Q ss_pred cCCCCCCCcccCCCCccC--CC--C-ChhHh---------hcCcce-EEE--EeecCceecChHhHHHHHhC-CCcEEcc
Q 027878 90 DRRIPIPVFDLYGVGQRQ--AF--S-TPNLL---------RELNLK-VCK--LSTGDSLDMSSQDETSITAN-DATIKDM 151 (217)
Q Consensus 90 d~~~~~p~f~~y~~g~~p--~~--~-~~~l~---------~~~~~~-~G~--i~Sgd~~~~~~~~~~~l~~~-~a~~vdM 151 (217)
.... |. ..+..+..+ .+ | |++|. .+++++ .|+ ...|++|.+.+| .++++.. |+++|.|
T Consensus 115 tg~~--p~-t~~~g~~~~~~~~~~~y~~~Lr~~l~~aA~~~g~~~~~~GvY~~~~GP~fET~AE-ir~~r~~~GaD~VGM 190 (267)
T PRK08564 115 TKKR--EY-TFYDGPVVAHVSMADPFCPELRKIIIETAKELGIRTHEKGTYICIEGPRFSTRAE-SRMWREVFKADIIGM 190 (267)
T ss_pred CCCC--Cc-ccCCCCccccCCCCcccCHHHHHHHHHHHHHcCCceecceEEEEeeCCCcCCHHH-HHHHHHccCCCEecc
Confidence 6532 21 011111111 11 1 33442 145677 465 678899876555 6788886 9999999
Q ss_pred cchHHHHHHHhCCCCEEEEEeeecCCCCCC-c-cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027878 152 EGAAVAYVADLFKVPALFVKAVTDLVDGDK-P-TAEEFMQNLVAVTAALEQSVSQVIDFING 211 (217)
Q Consensus 152 E~aava~~a~~~~ip~~~ir~ISD~~~~~~-~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~~ 211 (217)
-+...+.+|++.|++++.|-.|+|++.... + ++++..+.+++++.++.+.+..+|+.+..
T Consensus 191 S~vpEvilAre~g~~~~~is~VtN~a~g~~~~~t~~ev~~~~~~~~~~~~~ll~~~i~~l~~ 252 (267)
T PRK08564 191 TLVPEVNLACELGMCYATIAMVTDYDVWAEKPVTAEEVTRVMAENTEKAKKLLYEAIPRIPE 252 (267)
T ss_pred CccHHHHHHHHcCCceEEEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999997643 3 88999999999999999999999998853
No 39
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=99.60 E-value=2.6e-13 Score=115.57 Aligned_cols=190 Identities=15% Similarity=0.104 Sum_probs=138.4
Q ss_pred EEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHH-H---HHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeec
Q 027878 14 TCTQQEYEIHDLFFANLNLILSEVDSVGTISAS-L---VTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 89 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa-~---~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~ 89 (217)
.+..|+++|+++.+. ...|+ ....... + +.-++++..+++.||.+..+||++ +++++||+|++++.++.
T Consensus 38 ~l~~G~l~g~~v~~l----~RhGr--~H~y~p~~i~~rAni~alk~lGv~~ii~tna~Gsln-~~~~pGdlvv~~D~Id~ 110 (290)
T PRK07432 38 ALIVGTLDGTRVAFL----ARHGR--NHTLLPTELPFRANIYAMKQLGVEYLISASAVGSLK-EEAKPLDMVVPDQFIDR 110 (290)
T ss_pred CEEEEEECCEEEEEE----ECCCC--CCccChhhcCcHHHHHHHHHcCCCEEEEEecccccc-CCCCCCCEEeecceecC
Confidence 477899999998872 23552 2211111 1 124577889999999999999999 89999999999999976
Q ss_pred cCCCCCCCcccCCCCccCCC-C-ChhHh-------h--cC---cce-EEE--EeecCceecChHhHHHHHhCCCcEEccc
Q 027878 90 DRRIPIPVFDLYGVGQRQAF-S-TPNLL-------R--EL---NLK-VCK--LSTGDSLDMSSQDETSITANDATIKDME 152 (217)
Q Consensus 90 d~~~~~p~f~~y~~g~~p~~-~-~~~l~-------~--~~---~~~-~G~--i~Sgd~~~~~~~~~~~l~~~~a~~vdME 152 (217)
..+...-.|+....++.+.. | +++|. + ++ +++ .|+ ...|++|.+.+| .++++..|+++|.|-
T Consensus 111 t~~rp~t~~~~~~~~~~~~~~~y~~~Lr~~l~~~a~~~~~~~~~~~~~GvYv~~~GPrfET~AE-ir~~r~~GaDvVGMS 189 (290)
T PRK07432 111 TKNRISTFFGEGIVAHIGFGDPICPALAGVLADAIASLNLPDVTLHRGGTYVCMEGPAFSTKAE-SNLYRSWGATVIGMT 189 (290)
T ss_pred CCCCCCcccCCCcccCCcCCCCcCHHHHHHHHHHHHHcCCCccceeCCeEEEEeeCCCCCcHHH-HHHHHHcCCCEeccC
Confidence 54321001221111112111 1 34442 1 22 466 475 568889876554 677888999999999
Q ss_pred chHHHHHHHhCCCCEEEEEeeecCCCCC---Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027878 153 GAAVAYVADLFKVPALFVKAVTDLVDGD---KP-TAEEFMQNLVAVTAALEQSVSQVIDFING 211 (217)
Q Consensus 153 ~aava~~a~~~~ip~~~ir~ISD~~~~~---~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~~ 211 (217)
+...+.+|++.|++++.|-.|+|++... .+ ++++..+.++++++++.+.+..+|+.+..
T Consensus 190 ~vPEvilAre~Gl~~a~ls~VTN~a~g~~~~~~~s~eeV~~~~~~~~~~~~~ll~~~i~~l~~ 252 (290)
T PRK07432 190 NLPEAKLAREAEIAYATLALVTDYDCWHPDHDSVTVEMVIGNLHKNAVNAQKVIQETVRRLSA 252 (290)
T ss_pred chHHHHHHHhCCCcEEEEEEEeecccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999642 23 88999999999999999999999999855
No 40
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=99.53 E-value=2e-12 Score=108.98 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=137.1
Q ss_pred EEEEEEEcceeEEEeeeeeEeeCCCC--c-CHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeecc
Q 027878 14 TCTQQEYEIHDLFFANLNLILSEVDS--V-GTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHD 90 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~~G~~g--v-G~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d 90 (217)
.+..|+++|++|.+. ...|+.- . -.++ -.+--++++..+++.||.+..+||++ +++++||+++++++++..
T Consensus 39 ~l~~G~l~g~~v~~l----~RhGr~H~ye~~~i~-~rani~alk~lGv~~ii~tnA~Gsln-~~~~pGdlvi~dd~id~t 112 (264)
T PRK07823 39 PITIGEVGGRRVAFL----PRHGRDHEFSPHTVP-YRANMWALRALGVRRVFAPCAVGSLR-PELGPGTVVVPDQLVDRT 112 (264)
T ss_pred CEEEEEECCEEEEEE----eCCCCCCCcCCCCcc-chHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEcchhhhcc
Confidence 478899999998883 1233100 0 1133 22334566788999999999999999 899999999999987654
Q ss_pred CCCCCCCcccCCCC-ccCCC--C-ChhHhh-----cCcceEEE--EeecCceecChHhHHHHHhCCCcEEcccchHHHHH
Q 027878 91 RRIPIPVFDLYGVG-QRQAF--S-TPNLLR-----ELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYV 159 (217)
Q Consensus 91 ~~~~~p~f~~y~~g-~~p~~--~-~~~l~~-----~~~~~~G~--i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~ 159 (217)
.+.. +.| ++.| ..+.+ | |++|.+ ...++.|+ ...|++|.+.+| .++++..|+++|.|-+...+.+
T Consensus 113 ~~~p-~t~--~~~g~~f~~m~~~y~~~Lr~~l~~~a~~~~~GvY~~~~GP~fET~AE-ir~~r~~GaDvVGMS~vPEvil 188 (264)
T PRK07823 113 SGRA-QTY--FDSGGVHVSFADPYCPTLRAAALGLPGVVDGGTMVVVQGPRFSTRAE-SRWFAAQGWSLVNMTGYPEAVL 188 (264)
T ss_pred CCCC-CCc--cCCCccCCCCCcccCHHHHHHHHHHHhhcCCeEEEEeeCCCCCCHHH-HHHHHHcCCCEeccCccHHHHH
Confidence 3321 122 2222 11111 1 344431 11456675 678999876555 6788889999999999999999
Q ss_pred HHhCCCCEEEEEeeecCCCCC---Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027878 160 ADLFKVPALFVKAVTDLVDGD---KP-TAEEFMQNLVAVTAALEQSVSQVIDFING 211 (217)
Q Consensus 160 a~~~~ip~~~ir~ISD~~~~~---~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~~ 211 (217)
|++.|++++.|-.|+|++... .+ +.++..+.+++++.++.+.+..+|+.+..
T Consensus 189 Are~gl~~~~is~VTN~a~g~~~~~~~~~eev~~~~~~~~~~~~~ll~~~i~~~~~ 244 (264)
T PRK07823 189 ARELELCYAAIALVTDLDAGVEAGEGVKAVDVFAEFGRNIERLKRLVRDAIAAVPA 244 (264)
T ss_pred HHHCCCceEEEEEEeccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998654 23 78999999999999999999999988754
No 41
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.9e-11 Score=102.05 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=137.6
Q ss_pred CcEEEEEEEc--ceeEEEeeeeeEeeCCCC---cCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcce
Q 027878 12 GHTCTQQEYE--IHDLFFANLNLILSEVDS---VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (217)
Q Consensus 12 g~~~~~G~~~--~~~v~~~~v~~~~~G~~g---vG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~ 86 (217)
....+.|++. +.+|.+. ...|+.= -.+++..+. -+.++..+++.||.+..+||++ +++++||+|++++.
T Consensus 50 s~~~~~g~~~~~g~~v~~l----~rhGr~H~y~ph~~~~ran-i~alk~lGV~~vi~tnAvGsl~-~~~~pGd~vv~~d~ 123 (262)
T COG0005 50 SVPGHAGELVTLGGKVAFL----ARHGRGHSYPPHSVNYRAN-IRALKALGVERVILTNAVGSLR-EEYKPGDLVVPDDH 123 (262)
T ss_pred CCceEEEEEeecCceEEEE----ecCCCCCCCCCCCchHHHH-HHHHHHcCCeEEEEeccccccc-ccCCCCCEEeehhh
Confidence 3455677776 5554442 4455100 124555555 7888899999999999999999 89999999999999
Q ss_pred eeccCCCCCCCcccCCCCccCCCC------ChhHh-------h----cCcceEEE--EeecCceecChHhHHHHHhCCCc
Q 027878 87 AFHDRRIPIPVFDLYGVGQRQAFS------TPNLL-------R----ELNLKVCK--LSTGDSLDMSSQDETSITANDAT 147 (217)
Q Consensus 87 ~~~d~~~~~p~f~~y~~g~~p~~~------~~~l~-------~----~~~~~~G~--i~Sgd~~~~~~~~~~~l~~~~a~ 147 (217)
+++.. ...|-|+ .+..+.++ |++|. + .+..+.|+ +.+|++|.+.+| .+.++..|++
T Consensus 124 Id~t~-r~~~~~~---~~~~~~~~d~s~~y~~~lr~~l~~~a~~~~~~~~~~~GvYv~~eGP~feT~AE-irm~r~~GaD 198 (262)
T COG0005 124 IDFTK-RQNPFYG---GNDGVRFVDMSDPYDPELREALAEAAKELRLGHPLQEGVYVCVEGPRFETPAE-IRMFRSLGAD 198 (262)
T ss_pred eeccC-CCCcccC---CCCceeeCCCCCcCCHHHHHHHHHHHhhcccCcccCceEEEEecCCCcCCHHH-HHHHHHhCCC
Confidence 98885 2223322 22112221 34432 1 23444564 678999976554 6788889999
Q ss_pred EEcccchHHHHHHHhCCCCEEEEEeeecCCCCCC-c-cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027878 148 IKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDK-P-TAEEFMQNLVAVTAALEQSVSQVIDF 208 (217)
Q Consensus 148 ~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~-~-~~~~~~~~~~~a~~~~~~~l~~~l~~ 208 (217)
+|.|-+...+.+|++.+++++.|-.|+|++.... + +.+|-.+.++.++.++.+.+.+.|+.
T Consensus 199 vVGMS~vPEv~lARe~~l~ya~is~vTn~aag~~~~lt~eEV~~~~~~~~~~~~~l~~~~i~~ 261 (262)
T COG0005 199 VVGMSTVPEVILARELGLCVAALSLVTNYAAGIGQPLTHEEVLEVAKENAEKIAKLLAAAIAK 261 (262)
T ss_pred cccCcCCcHHHHhHhhCCcEEEEEEeehhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999997654 3 88999999999999999999888865
No 42
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=99.05 E-value=1.1e-08 Score=83.13 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=128.4
Q ss_pred cCcEEEEEEEcceeEEEeeeeeEeeCCCC---cCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEccee
Q 027878 11 VGHTCTQQEYEIHDLFFANLNLILSEVDS---VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (217)
Q Consensus 11 ~g~~~~~G~~~~~~v~~~~v~~~~~G~~g---vG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~ 87 (217)
..-+...|++++..+.+ ++.+|+.= .+++|..+..- ++...+++.||..-.||+|. +++++||+|++++++
T Consensus 41 pSd~v~~g~i~gv~cvl----lARHGr~H~imPt~Vn~rANiw-ALk~~gc~~ii~~tAcGSLr-e~I~Pgd~v~p~q~I 114 (283)
T KOG3985|consen 41 PSDPVIIGQISGVHCVL----LARHGRKHDIMPTKVNFRANIW-ALKSLGCTAIISFTACGSLR-EEIKPGDFVLPDQII 114 (283)
T ss_pred cCCceeeeecCCeEEEE----EeccccCCccCCCcCchhHhHH-HHHhCCCcEEEEeecccccc-ccCCCccEecchhhh
Confidence 34456788888777766 36677210 24667666544 44678999999999999999 899999999999998
Q ss_pred eccCCCCCCCccc-CC----CCccCCCC--ChhHh-------h---c--CcceEEEEeecCceecChHhHHHHHhCCCcE
Q 027878 88 FHDRRIPIPVFDL-YG----VGQRQAFS--TPNLL-------R---E--LNLKVCKLSTGDSLDMSSQDETSITANDATI 148 (217)
Q Consensus 88 ~~d~~~~~p~f~~-y~----~g~~p~~~--~~~l~-------~---~--~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~ 148 (217)
+...+....-|+. |. ..++|..| ++++. + . ..--++++.-|++|.+.+| -..++..|+.+
T Consensus 115 DrTt~R~~tffdg~~~~a~gVcHv~~~~pf~~k~reil~~~a~~l~~~~hd~~tvVciEGPrFStRAE-S~mfR~wGa~v 193 (283)
T KOG3985|consen 115 DRTTGRPSTFFDGSYDQAGGVCHVPFGPPFSQKLREILISTAKELTNPHHDDGTVVCIEGPRFSTRAE-SKMFRSWGASV 193 (283)
T ss_pred hhhccCccccccCcccCCCceEeccCCCCcCHHHHHHHHHHHHHhcCCcCCceeEEEeeCCccchHHH-HHHHHHhccce
Confidence 6665532112221 11 11233322 23331 1 1 2222345667889876655 34566789999
Q ss_pred EcccchHHHHHHHhCCCCEEEEEeeecCCC---CCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027878 149 KDMEGAAVAYVADLFKVPALFVKAVTDLVD---GDKP-TAEEFMQNLVAVTAALEQSVSQVIDFING 211 (217)
Q Consensus 149 vdME~aava~~a~~~~ip~~~ir~ISD~~~---~~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~~ 211 (217)
++|-.-..+.+|++.++|+..+-..+||-- +..+ +.+...++.+.+..+.-..+++.+.++..
T Consensus 194 INMt~iPE~~LAkEagi~Y~~iamaTDYDcWr~~ee~Vtve~Vm~~~~~N~~kak~ll~~av~~i~k 260 (283)
T KOG3985|consen 194 INMTVIPEAKLAKEAGIPYQMIAMATDYDCWRMEEEPVTVETVMKTLANNVRKAKILLLEAVGSIAK 260 (283)
T ss_pred eeeeechHHHHHHhcCcchhhheeccchhhhhccCCCccHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999852 2222 55666665555555555555555555543
No 43
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.03 E-value=2.2e-08 Score=81.77 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=134.1
Q ss_pred EEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHH-HHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEEcceeeccC-
Q 027878 14 TCTQQEYEIHDLFFANLNLILSEVDSVGTISASLV-TYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDR- 91 (217)
Q Consensus 14 ~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~-~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~- 91 (217)
+++.|+++|.++..++-.+-.. -|..-+..+ --+.++..+++.++.+--|||++ +..++||+.+...-++.-.
T Consensus 67 ~lvfG~l~G~pvv~mqgrfh~y----egy~L~~~tfpvrVm~l~Gv~~lvvTnaAggin-~~f~vgdiMli~DHin~~G~ 141 (286)
T KOG3984|consen 67 RLVFGTLGGAPVVAMQGRFHSY----EGYPLAKCTFPVRVMQLLGVRILVVTNAAGGIN-PKFAVGDIMLIKDHINLPGL 141 (286)
T ss_pred cEEEEecCCceEEEEccccccc----CCccHHHhhhhHHHHHHcCceEEEEeccccCcC-cccccccEEEEecccCCccc
Confidence 3888999999988754333221 233434333 34777888999999999999999 8999999999876553221
Q ss_pred -CCCCC-CcccCCCCccCCCC------ChhHh-------h----cCcceEEE--EeecCceecChHhHHHHHhCCCcEEc
Q 027878 92 -RIPIP-VFDLYGVGQRQAFS------TPNLL-------R----ELNLKVCK--LSTGDSLDMSSQDETSITANDATIKD 150 (217)
Q Consensus 92 -~~~~p-~f~~y~~g~~p~~~------~~~l~-------~----~~~~~~G~--i~Sgd~~~~~~~~~~~l~~~~a~~vd 150 (217)
+.+.+ +-+.-++| ++|| |.+|. + +.++|+|+ +++|+.|.+.+| .+.|+..|+++|.
T Consensus 142 agq~pl~Gpnd~rfG--~rf~a~sdAYd~~lr~~a~~~~K~m~iqr~lheGvy~~vgGP~~eT~AE-~rmlr~mg~dAVG 218 (286)
T KOG3984|consen 142 AGQNPLRGPNDPRFG--VRFPALSDAYDKDLRQKALEIGKAMGIQRTLHEGVYACVGGPIFETRAE-SRMLRTMGADAVG 218 (286)
T ss_pred cCCCCCCCCCccccc--ccccchhhhhhHHHHHHHHHHHHHhcccchhhcceEEEecCCccccHHH-HHHHHHhCccccc
Confidence 11100 00000111 2333 12222 1 35688885 778999877655 4677888999999
Q ss_pred ccchHHHHHHHhCCCCEEEEEeeecCCCCCC------c-cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027878 151 MEGAAVAYVADLFKVPALFVKAVTDLVDGDK------P-TAEEFMQNLVAVTAALEQSVSQVIDFIN 210 (217)
Q Consensus 151 ME~aava~~a~~~~ip~~~ir~ISD~~~~~~------~-~~~~~~~~~~~a~~~~~~~l~~~l~~~~ 210 (217)
|-+.....+|+..|++.+.+-.|||.+.-+. + +.+|..+..+.+++++.+.+..++..|+
T Consensus 219 MStvpEVivArHcG~kVlafslITn~~~~d~s~sa~~ev~h~evl~v~~~a~~~~~~lVs~lm~~i~ 285 (286)
T KOG3984|consen 219 MSTVPEVIVARHCGLKVLAFSLITNKAVVDESASADVEVDHDEVLEVGKQAAQACSDLVSRLMYEIH 285 (286)
T ss_pred ccccchheeeccCCcEEEEEEEEeccccccCchhccccCCHHHHHhhhHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999875322 2 5788889999999999999988887663
No 44
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=98.60 E-value=6.3e-07 Score=73.35 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=103.3
Q ss_pred CeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhc---CC--CEEEEEeeecccCCCCCCccc
Q 027878 5 GTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQAL---KP--DLIINAGTAGGFKAKGASIGD 79 (217)
Q Consensus 5 ~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~---~~--~~ii~~G~aG~l~~~~~~~GD 79 (217)
|+..|+-......-.|+--+|.. +.+| ||.++-++.+.++|+-+ +. -.+|.+|+|||+. +++|.
T Consensus 81 ~~~~di~a~sdRyamYKvGPVl~-----vsHG---mGtpS~SImlhEliKLl~~Arckdp~~iRiGT~GGiG---v~pGT 149 (308)
T KOG3728|consen 81 GDPVDICARSDRYAMYKVGPVLC-----VSHG---MGTPSFSIMLHELIKLLYYARCKDPVFIRIGTCGGIG---VPPGT 149 (308)
T ss_pred CCCcchhcccceeEEEeecceEE-----EecC---CCCccHHHHHHHHHHHHHHccCCCceEEEEeccCccC---CCCcc
Confidence 33334333333333455444444 7899 99999999999998843 33 3789999999997 79999
Q ss_pred EEEEcceeeccCCCCCCCcccCCCCcc---CCCCChhHh-----------hcCcceEEEEeecCceecC-----------
Q 027878 80 VFLISDVAFHDRRIPIPVFDLYGVGQR---QAFSTPNLL-----------RELNLKVCKLSTGDSLDMS----------- 134 (217)
Q Consensus 80 vvi~~~~~~~d~~~~~p~f~~y~~g~~---p~~~~~~l~-----------~~~~~~~G~i~Sgd~~~~~----------- 134 (217)
+|+++.+++...+.+ |+..-.|+. |..-+.+|. ..++...|...+.|.|+..
T Consensus 150 vV~s~~A~n~~l~~e---~eqiilGkrv~Rpaqld~~l~~eL~~~~~e~~d~~~ti~gnTmctddFYEGQgRlDGa~Cdy 226 (308)
T KOG3728|consen 150 VVASKNAFNGLLRNE---HEQIILGKRVVRPAQLDKKLIRELLAFGVEANDGFQTISGNTMCTDDFYEGQGRLDGAFCDY 226 (308)
T ss_pred EEEehhhhhhhhhhh---HHhhhccceeechhhhhHHHHHHHHHhCCccCCCCceeeccceecchhhcccccccccccCc
Confidence 999999876554322 111112321 211123332 1355667777777777642
Q ss_pred --hHhHHHHH---hCCCcEEcccchHHHHHHHhCCCCEEEEE-eeecCCCCCC
Q 027878 135 --SQDETSIT---ANDATIKDMEGAAVAYVADLFKVPALFVK-AVTDLVDGDK 181 (217)
Q Consensus 135 --~~~~~~l~---~~~a~~vdME~aava~~a~~~~ip~~~ir-~ISD~~~~~~ 181 (217)
.++...|+ +.|+.-+|||+.-+|.++++.|+...++- +.-|..+++.
T Consensus 227 sEkdK~afLek~~a~GVrNIEMEss~FAs~t~~~G~kaavVCVtLlnRl~GDQ 279 (308)
T KOG3728|consen 227 SEKDKMAFLEKLHALGVRNIEMESSMFASVTQKAGVKAAVVCVTLLNRLKGDQ 279 (308)
T ss_pred chhhHHHHHHHHHHcCceeeehhHHHHHHHHHhcCcchhhhHHHHHhhccCCc
Confidence 22334444 45999999999999999999998754442 3445555443
No 45
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=98.42 E-value=1.4e-05 Score=68.75 Aligned_cols=172 Identities=18% Similarity=0.121 Sum_probs=110.6
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHh--cCC--CEEEEEeeecccCCCCCCcccEEEEcceeeccCCCC-----CCC-cc-cC
Q 027878 33 ILSEVDSVGTISASLVTYASIQA--LKP--DLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIP-----IPV-FD-LY 101 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~--~~~--~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~~-----~p~-f~-~y 101 (217)
+.|| +|++|||..+..|+.. |+. ..+|..||+|.=+ +.-.+|+++++.-+++.|.+.. .|. |. .|
T Consensus 51 ~~tG---~G~~nAAasi~AL~ldp~FDls~tYfliaGIAGv~P-~~~tlGSvawA~~~Vd~dl~~eiD~Re~P~~w~~Gy 126 (314)
T PF06516_consen 51 ITTG---EGEINAAASIMALGLDPRFDLSKTYFLIAGIAGVDP-KQGTLGSVAWARYVVDGDLQYEIDAREIPADWPTGY 126 (314)
T ss_pred EEec---ccccchHHHHHHHhhCCccCCcceEEEEeecccCCc-CcCceeeeeeeeeeechhhccccccccccCCCCCCC
Confidence 8899 9999999999998773 322 4899999999777 7899999999999998776432 121 10 00
Q ss_pred ------CCCccCC-------CC-ChhHh--------------------------------hcCcceEEEEeecCceecCh
Q 027878 102 ------GVGQRQA-------FS-TPNLL--------------------------------RELNLKVCKLSTGDSLDMSS 135 (217)
Q Consensus 102 ------~~g~~p~-------~~-~~~l~--------------------------------~~~~~~~G~i~Sgd~~~~~~ 135 (217)
.+.+.|. |+ ++.|. +.+.+..|..+|+|.|..-.
T Consensus 127 ~~~g~~~P~~~p~~~~~tevf~LN~~L~~~A~~ltk~v~L~Ds~~~~~~R~~Y~~~~~A~~~P~V~~gDt~tsd~ywhG~ 206 (314)
T PF06516_consen 127 FPYGTKRPNQYPRSVYGTEVFELNPALVDWAYELTKDVELPDSPAAAAYRARYPGYPAAQRPPFVLKGDTLTSDTYWHGA 206 (314)
T ss_pred cccCCCCcccCCCCCCCceEEEcCHHHHHHHHHHhcCCccCCCHHHHHHHHhCCCCcccCCCCEEEEccccccCCeeeCc
Confidence 1112221 10 12221 13567888899999998765
Q ss_pred Hh---HHHHHh-C--C---CcEEcccchHHHHHHHhCC-------CCEEEEEeeecCCCCCCc-------------cHHH
Q 027878 136 QD---ETSITA-N--D---ATIKDMEGAAVAYVADLFK-------VPALFVKAVTDLVDGDKP-------------TAEE 186 (217)
Q Consensus 136 ~~---~~~l~~-~--~---a~~vdME~aava~~a~~~~-------ip~~~ir~ISD~~~~~~~-------------~~~~ 186 (217)
.. .+.+.+ + | --.-.||-.|.+++-.+.. -+++++|++||+--.... .++-
T Consensus 207 ~l~~~a~~~~~~~T~G~g~y~~T~~ED~atl~aL~r~~~~g~vD~~RvlvlRt~SNFdrpppg~ta~~~l~~~~~~g~~~ 286 (314)
T PF06516_consen 207 RLNEWAEDWVKLWTNGQGTYCTTAMEDNATLEALTRLAKAGRVDFDRVLVLRTASNFDRPPPGQTAAESLFAESQGGFAP 286 (314)
T ss_pred HHHHHHHHHHHHHhCCcccEechHHHhHHHHHHHHHHHhcCCcCcceEEEEecccCCCCCccCCCHHHHhcccCCCcHHH
Confidence 32 223322 1 2 2346899999999877643 269999999998665331 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027878 187 FMQNLVAVTAALEQSVSQVIDF 208 (217)
Q Consensus 187 ~~~~~~~a~~~~~~~l~~~l~~ 208 (217)
-.+|+-++...+.+.|++-.+.
T Consensus 287 Al~N~y~vG~~VV~~il~~Wd~ 308 (314)
T PF06516_consen 287 ALENAYRVGSPVVDDILANWDT 308 (314)
T ss_pred HHHHHHHHhHHHHHHHHhchHh
Confidence 3455556665555555444443
No 46
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism]
Probab=86.85 E-value=0.5 Score=40.29 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=100.4
Q ss_pred eeEeeCCCCcCHHHHHHHHHHHHHhcCC----CEEEEEeeecccCCCCCCcccEEEEcceeeccCCC-----CCC-Cc--
Q 027878 31 NLILSEVDSVGTISASLVTYASIQALKP----DLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRI-----PIP-VF-- 98 (217)
Q Consensus 31 ~~~~~G~~gvG~~~Aa~~~~~li~~~~~----~~ii~~G~aG~l~~~~~~~GDvvi~~~~~~~d~~~-----~~p-~f-- 98 (217)
.-+.|| ||+.||+.+...|+..-+. ..++..||+|-=+ ..-.+|..-++.-+++.|.-. ..| +|
T Consensus 83 cq~tTg---mG~AnAassvsAL~ls~kfdlt~tyfLiAGIAGidP-~~gtlGSaawARyaVD~dl~~eiD~RE~Pa~Wp~ 158 (349)
T COG5042 83 CQMTTG---MGKANAASSVSALLLSKKFDLTKTYFLIAGIAGIDP-KAGTLGSAAWARYAVDADLIHEIDLREIPAGWPY 158 (349)
T ss_pred hhhhcc---cchhhHHHHHHHHHhccccCcceeeeeeeeccccCc-cccccchhHHhhhhcccccccccccccCcCCCCc
Confidence 337789 9999999999888764333 4899999999777 677899888887766555421 123 11
Q ss_pred ccCCCC-----ccCCCC--------ChhHh------------------------------hc-CcceEEEEeecCceecC
Q 027878 99 DLYGVG-----QRQAFS--------TPNLL------------------------------RE-LNLKVCKLSTGDSLDMS 134 (217)
Q Consensus 99 ~~y~~g-----~~p~~~--------~~~l~------------------------------~~-~~~~~G~i~Sgd~~~~~ 134 (217)
+.|.+| ..|..+ +..|+ ++ +.+..+-.+|+|.+...
T Consensus 159 g~~glgt~~pg~kp~~~y~tevf~LN~~L~~~A~altk~v~L~D~~~a~AyRk~Y~~~pA~~pP~V~qcdtas~dtyWhG 238 (349)
T COG5042 159 GFYGLGTEGPGVKPPMNYSTEVFALNERLLDWAYALTKKVVLEDNPEAAAYRKHYVEAPANRPPFVTQCDTASADTYWHG 238 (349)
T ss_pred ccccccCCCCCCCCCCCccchHHHHHHHHHHHHHHhcCCccccCCHHHHHHHhccccccccCCCeEEeeccccccccchh
Confidence 112222 222211 11111 12 33555678899998776
Q ss_pred hHhHH---HHHh-----CCC-cEEcccchHHHHHHH---hCC----CCEEEEEeeecCCCCCCc--cHHHH---------
Q 027878 135 SQDET---SITA-----NDA-TIKDMEGAAVAYVAD---LFK----VPALFVKAVTDLVDGDKP--TAEEF--------- 187 (217)
Q Consensus 135 ~~~~~---~l~~-----~~a-~~vdME~aava~~a~---~~~----ip~~~ir~ISD~~~~~~~--~~~~~--------- 187 (217)
...-+ .+.+ .|. -.-+||--|...+-. +.| -++.++|.-||+--.-.. .++..
T Consensus 239 a~lgq~~~~w~k~lTdg~g~ycttqqEDnatl~aL~r~a~aG~vdf~RVavlRTaSnfdRp~~gqta~~~l~~s~~ggfv 318 (349)
T COG5042 239 AKLGQRAQDWVKVLTDGKGTYCTTQQEDNATLTALTRAAKAGLVDFNRVAVLRTASNFDRPYLGQTAFDSLVNSTSGGFV 318 (349)
T ss_pred hhhhHHHHHHHHHhhCCCcceEecccccchHHHHHHHHhhcccccceeeEEEeeccccCCCCCCCcchhhhhcccCCccc
Confidence 53222 2222 122 235788777666543 334 269999999998654331 22222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHh
Q 027878 188 --MQNLVAVTAALEQSVSQVIDFI 209 (217)
Q Consensus 188 --~~~~~~a~~~~~~~l~~~l~~~ 209 (217)
.+|+=.+.+.+.+.|..-+++|
T Consensus 319 ~A~dnly~ag~plvd~Iv~rW~~w 342 (349)
T COG5042 319 LATDNLYRAGKPLVDDIVARWSRW 342 (349)
T ss_pred hhhhhHHhccchHHHHHHHhhHHH
Confidence 2345555555555555444444
No 47
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=68.09 E-value=11 Score=31.21 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEE
Q 027878 45 ASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFL 82 (217)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi 82 (217)
+.-.+..++.+++||.+|.+|.+||.+ .+.+=-+-+
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~--~itlErvAi 84 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRS--MITVERLAQ 84 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcC--ceEeEEEEE
Confidence 344677888999999999999999997 355544433
No 48
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=61.97 E-value=32 Score=27.85 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 44 SASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 44 ~Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
.+.-.+..++++++|+.+|.+|.+|+.+
T Consensus 47 ~~~~~l~~~l~~~~PdlVIhlGva~~~~ 74 (202)
T PF01470_consen 47 KAFEALEELLEEHQPDLVIHLGVAGGRK 74 (202)
T ss_dssp HHHHHHHHHHHHH--SEEEEEEE-TT-S
T ss_pred hHHHHHHHHHHhcCCcEEEEEeecCCcc
Confidence 4555677888999999999999999887
No 49
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=57.16 E-value=31 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=34.8
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCC
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAK 73 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~ 73 (217)
+.|| +-|++..+.-.+..++..++||.+|.++=-+++++|
T Consensus 37 ~gsG-aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP 76 (277)
T PRK00994 37 VGSG-AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGP 76 (277)
T ss_pred eccC-CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCc
Confidence 6677 568999999888999899999999999999999853
No 50
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=46 Score=27.04 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEE
Q 027878 44 SASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFL 82 (217)
Q Consensus 44 ~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi 82 (217)
.+...+...|++++|+.++++|-+||.. ++.+=-|.|
T Consensus 47 ~s~~~l~~~i~~~qPd~vl~iG~A~GR~--~iT~ERVAI 83 (207)
T COG2039 47 KSIDALVQAIAEVQPDLVLAIGQAGGRT--KITPERVAI 83 (207)
T ss_pred HHHHHHHHHHHhhCCCeEEEecccCCCC--cCChhheee
Confidence 4556678888999999999999999998 355544443
No 51
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=51.38 E-value=43 Score=27.37 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
+.-.+..++.+++|+.+|.+|.+||.+
T Consensus 49 ~~~~l~~~~~~~~Pd~vi~~G~a~gr~ 75 (211)
T PRK13196 49 AMAALSRLLDELQPSAVLLTGLAAGRP 75 (211)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCcC
Confidence 344778888999999999999999987
No 52
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=48.12 E-value=54 Score=26.79 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 44 SASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 44 ~Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
.+.-.+..++.+++|+.+|.+|.+|+.+
T Consensus 47 ~~~~~l~~~l~~~~Pd~vlhlG~a~~r~ 74 (208)
T PRK13194 47 RAREELEKVLDEIKPDITINLGLAPGRT 74 (208)
T ss_pred hHHHHHHHHHHHhCCCEEEEeeccCCcc
Confidence 3445567778888999999999999987
No 53
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=45.14 E-value=30 Score=28.29 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 44 SASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 44 ~Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
.+.-.+..++.+++|+.+|.+|.+|+.+
T Consensus 47 ~~~~~l~~~~~~~~Pd~vl~~G~a~~r~ 74 (209)
T PRK13193 47 KIEDLIVTKIREMKPILTLGIGVAPGRA 74 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCcC
Confidence 3455667788888999999999999987
No 54
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=42.59 E-value=79 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.3
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+| --..+.+-.+.++.+.. +|+.+|-+|.|....
T Consensus 78 lVtG---~VT~~m~~~l~r~ye~~p~pK~VIAvGsCA~~G 114 (183)
T PRK14815 78 IVAG---TVTYKMALAVRRIYDQMPEPKWVIAMGACASSG 114 (183)
T ss_pred EEeC---cCchhhHHHHHHHHHhCCCCCEEEEeccccccC
Confidence 3567 44455566677776654 899999999995444
No 55
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=39.23 E-value=70 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=30.9
Q ss_pred eEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCC
Q 027878 32 LILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKA 72 (217)
Q Consensus 32 ~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~ 72 (217)
++.|| .-|++..--.+...++..|+||.||++|---+.++
T Consensus 36 Vvgsg-aKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG 75 (277)
T COG1927 36 VVGSG-AKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG 75 (277)
T ss_pred Eeccc-cccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 36666 35777755667778889999999999998777764
No 56
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=36.81 E-value=47 Score=27.15 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
+.-.+..++.+++|+.+|.+|.+|+..
T Consensus 46 ~~~~l~~~l~~~~Pd~vi~~G~a~g~~ 72 (212)
T TIGR00504 46 AIEALQQAIDEIEPDIVIMLGLAPGRS 72 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEeccCCCcC
Confidence 344567778888999999999999887
No 57
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.93 E-value=1.1e+02 Score=19.97 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=20.2
Q ss_pred eeCCCCcCHHHHHHHHHHHHHhcCCCE
Q 027878 34 LSEVDSVGTISASLVTYASIQALKPDL 60 (217)
Q Consensus 34 ~~G~~gvG~~~Aa~~~~~li~~~~~~~ 60 (217)
.+|..|+||...+..+...+.+.+.+.
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~~v 30 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGKRV 30 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 445557999999999998888755443
No 58
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=33.73 E-value=57 Score=28.14 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=31.2
Q ss_pred EEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEE
Q 027878 122 VCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVK 171 (217)
Q Consensus 122 ~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir 171 (217)
.+.++-.|++.++.+...++- ++-+|-+|+.+|+||++.-
T Consensus 235 davvvGADrVarNGDTANKIG----------Ty~LAv~aKhhgipFyvaa 274 (354)
T KOG1468|consen 235 DAVVVGADRVARNGDTANKIG----------TYQLAVLAKHHGIPFYVAA 274 (354)
T ss_pred CEEEEcccceeccCcchhhhh----------hhHHHHHHHhcCCceEEec
Confidence 467788899888776655554 3779999999999998763
No 59
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=33.70 E-value=98 Score=23.83 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=24.9
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+| .-..+.+-.+.++.++. +|+.+|-+|+|....
T Consensus 62 lVtG---~vt~~~~~~l~~~~e~~p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 62 IVAG---TVTKKMAPALRRLYDQMPEPKWVISMGACANSG 98 (145)
T ss_pred EEec---CCcHHHHHHHHHHHHhccCCceEEEecceeecC
Confidence 3567 44444566666666643 899999999996555
No 60
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=33.18 E-value=58 Score=26.68 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
+.-.+..++.+.+|+.+|.+|.+|+.+
T Consensus 49 ~~~~l~~~l~~~~Pd~vih~G~a~~~~ 75 (215)
T PRK13197 49 SAEVLKEAIEEVQPDAVICIGQAGGRT 75 (215)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCC
Confidence 344456777888999999999999887
No 61
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=32.06 E-value=58 Score=28.11 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=21.5
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCEEE
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDLII 62 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii 62 (217)
..+|-+|+||...|+++...+++-+-+.++
T Consensus 5 ~~~GKGGVGKTT~aaA~A~~~A~~G~rtLl 34 (305)
T PF02374_consen 5 FFGGKGGVGKTTVAAALALALARRGKRTLL 34 (305)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred EEecCCCCCcHHHHHHHHHHHhhCCCCeeE
Confidence 356777899999998888877776544333
No 62
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=31.17 E-value=69 Score=25.53 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
+...+.+++.+++|+.+|.+|.+|+-+
T Consensus 48 ~~~~~~~~~~~~~pd~vlhlG~~~~~~ 74 (194)
T cd00501 48 AVEVLPELIEEHKPDLVIHVGLAGGRS 74 (194)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCC
Confidence 444567788889999999999999887
No 63
>PRK13236 nitrogenase reductase; Reviewed
Probab=30.58 E-value=1.1e+02 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=23.7
Q ss_pred eCCCCcCHHHHHHHHHHHHHhcCCCEEEE
Q 027878 35 SEVDSVGTISASLVTYASIQALKPDLIIN 63 (217)
Q Consensus 35 ~G~~gvG~~~Aa~~~~~li~~~~~~~ii~ 63 (217)
.|=+|+||...++.+...+++.+.+.++.
T Consensus 12 ~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 12 YGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred ECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67778999999999999999877665554
No 64
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=30.50 E-value=1.4e+02 Score=23.11 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=25.3
Q ss_pred eeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEE
Q 027878 31 NLILSEVDSVGTISASLVTYASIQALKPDLIIN 63 (217)
Q Consensus 31 ~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~ 63 (217)
++..||.+|-||..-|..+..-+...++...++
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 347899999999998988888877767666554
No 65
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=28.39 E-value=1.1e+02 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=27.0
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+| .-..+.+-.+.+++++. +|+.+|-+|.|....
T Consensus 72 lVtG---~Vt~km~~~l~~~y~qmPePK~VIA~GaCA~sG 108 (189)
T PRK14813 72 IVAG---TVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCG 108 (189)
T ss_pred EEec---cCchhhHHHHHHHHHhCCCCCEEEEecccccCC
Confidence 4677 55566677777777754 999999999997554
No 66
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.17 E-value=87 Score=27.55 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=32.5
Q ss_pred EEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEEeeecC
Q 027878 123 CKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDL 176 (217)
Q Consensus 123 G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~ 176 (217)
-.++-.|++..+.+...++- ++.+|-+|++||+||++.-=.|..
T Consensus 231 ~viVGADRI~~nGdvaNKIG----------TY~lAvlAk~~gIPFyVaAP~sTi 274 (346)
T COG0182 231 AVIVGADRIAANGDVANKIG----------TYQLAVLAKHHGIPFYVAAPLSTI 274 (346)
T ss_pred EEEEccceeecCCcchhhhh----------HHHHHHHHHHcCCCeEEEcccCcc
Confidence 35677788777765555554 378999999999999998766643
No 67
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=27.89 E-value=97 Score=24.64 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.0
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+| .-..+.+-.+.++.++. .|+.||-+|.|..-.
T Consensus 75 lVtG---~vT~km~~~l~~~yeqmPePK~VIA~G~CA~sG 111 (173)
T PRK14818 75 IVAG---TLTYKMAERARLLYDQMPEPKYVISMGSCSNCG 111 (173)
T ss_pred EEeC---cCccccHHHHHHHHHhCCCCCEEEEeccccccC
Confidence 4678 66677777788888766 999999999985544
No 68
>CHL00175 minD septum-site determining protein; Validated
Probab=27.14 E-value=1.4e+02 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=22.8
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCE
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDL 60 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ 60 (217)
+.+|-+|+||...+..+..++.+.+-+.
T Consensus 20 v~s~KGGvGKTt~a~nLA~~La~~g~~v 47 (281)
T CHL00175 20 ITSGKGGVGKTTTTANLGMSIARLGYRV 47 (281)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhCCCeE
Confidence 6777788999999999998888776543
No 69
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=26.94 E-value=6 Score=25.42 Aligned_cols=54 Identities=13% Similarity=0.370 Sum_probs=38.8
Q ss_pred HHHHHHhCCCCEEEEEeeecCCCC-CCc---cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027878 156 VAYVADLFKVPALFVKAVTDLVDG-DKP---TAEEFMQNLVAVTAALEQSVSQVIDFI 209 (217)
Q Consensus 156 va~~a~~~~ip~~~ir~ISD~~~~-~~~---~~~~~~~~~~~a~~~~~~~l~~~l~~~ 209 (217)
++.++|..+-|...|++.++.... ... ..+++......+...+.+.+..+++.-
T Consensus 6 ~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s 63 (68)
T PF00512_consen 6 LASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFS 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888877765 322 236778888888888888887777653
No 70
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=25.64 E-value=1.7e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=24.9
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEE
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDLIINA 64 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~ 64 (217)
+.+|-+|+||.+-++++..++.+.+-+.++.+
T Consensus 7 v~SgKGGvGKTtitanlga~~~~~~~k~V~~i 38 (262)
T COG0455 7 VVSGKGGVGKTTITANLGAALAALGGKVVLLI 38 (262)
T ss_pred EEecCCCccHHHHHHhHHHHHHhhCCCeEEEE
Confidence 57888899999999999666666777775443
No 71
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.61 E-value=1.5e+02 Score=25.94 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=26.5
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
..+|=+||||...|+++..-++..+ +.++.+- .+ |..++||+.-.
T Consensus 6 ~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvS----tD-PAhsL~d~f~~ 50 (322)
T COG0003 6 FFTGKGGVGKTTIAAATAVKLAESG-KKVLLVS----TD-PAHSLGDVFDL 50 (322)
T ss_pred EEecCCcccHHHHHHHHHHHHHHcC-CcEEEEE----eC-CCCchHhhhcc
Confidence 4678888999777766666666666 4344332 23 33445555443
No 72
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=25.34 E-value=1.6e+02 Score=25.39 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=31.1
Q ss_pred eeeEeeCCCCcCHHHHHHHHHHHHHhcCCC-EEEEEeeec
Q 027878 30 LNLILSEVDSVGTISASLVTYASIQALKPD-LIINAGTAG 68 (217)
Q Consensus 30 v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~-~ii~~G~aG 68 (217)
+.++.+|=+||||...++.+.+.+++.+.+ .++=+-+||
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~G 88 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCG 88 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccC
Confidence 334889999999999999999999876554 556677777
No 73
>PRK10818 cell division inhibitor MinD; Provisional
Probab=24.69 E-value=1.7e+02 Score=24.17 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=21.5
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCC
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPD 59 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~ 59 (217)
+.++-+|+||...++.+...+.+.+.+
T Consensus 7 v~s~KGGvGKTt~a~nlA~~la~~g~~ 33 (270)
T PRK10818 7 VTSGKGGVGKTTSSAAIATGLAQKGKK 33 (270)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCe
Confidence 456666799999999999988877643
No 74
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=24.67 E-value=1.1e+02 Score=25.31 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=25.2
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+| .-..+.+-.+.++.+.. .|+.||-+|.|..-.
T Consensus 76 iVtG---~VT~km~~~L~rlyeqmPePK~VIA~GaCA~sG 112 (225)
T CHL00023 76 LTAG---TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 112 (225)
T ss_pred EEec---CCccccHHHHHHHHHhcCCCCeEEEEccccccC
Confidence 3567 44445566677777655 899999999995444
No 75
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=23.22 E-value=1.6e+02 Score=24.54 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=22.1
Q ss_pred eCCCCcCHHHHHHHHHHHHHhcCCCEEE
Q 027878 35 SEVDSVGTISASLVTYASIQALKPDLII 62 (217)
Q Consensus 35 ~G~~gvG~~~Aa~~~~~li~~~~~~~ii 62 (217)
+|=+|+||...+..+..++++.+-+.++
T Consensus 7 ~gKGGVGKTT~a~nLA~~La~~G~rVLl 34 (279)
T PRK13230 7 YGKGGIGKSTTVCNIAAALAESGKKVLV 34 (279)
T ss_pred ECCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence 3777899999999999888877665433
No 76
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.09 E-value=3.8e+02 Score=22.19 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=36.0
Q ss_pred cceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhCCCCEEEEEeeecCCCCCCccHHHHHHH
Q 027878 119 NLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQN 190 (217)
Q Consensus 119 ~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~ 190 (217)
++|.--++|--.+... .++| .+++.+|.+.|++=+.|-+++|-.|-...+..+|.+.
T Consensus 29 ~lHl~GLlSdGGVHSh---~~Hl------------~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 29 RLHLMGLLSDGGVHSH---IDHL------------FALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp -EEEEEEESS-SSS-----HHHH------------HHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred eEEEEEEecCCCcccc---HHHH------------HHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 4565555555455443 3344 6899999999999999999999998765555666443
No 77
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=22.89 E-value=1.8e+02 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=24.8
Q ss_pred eeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEee
Q 027878 34 LSEVDSVGTISASLVTYASIQALKPDLIINAGT 66 (217)
Q Consensus 34 ~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~ 66 (217)
.-|-+|+||.-.+..+..++++.+ ..|+.+|.
T Consensus 5 iYGKGGIGKST~~~Nlsaala~~G-~kVl~iGC 36 (273)
T PF00142_consen 5 IYGKGGIGKSTTASNLSAALAEMG-KKVLQIGC 36 (273)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred EEcCCCcccChhhhHHHHHHHhcc-ceeeEecc
Confidence 345557999999999999998777 78999986
No 78
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=22.71 E-value=1.8e+02 Score=24.02 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=21.2
Q ss_pred eCCCCcCHHHHHHHHHHHHHhcCCCEE
Q 027878 35 SEVDSVGTISASLVTYASIQALKPDLI 61 (217)
Q Consensus 35 ~G~~gvG~~~Aa~~~~~li~~~~~~~i 61 (217)
+|-+|+||...++.+...+++.+-+.+
T Consensus 6 ~gKGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 6 YGKGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 367789999999999988887665543
No 79
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=22.37 E-value=1e+02 Score=24.75 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=26.0
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+| .-..+.+-.+.++.+.. +|+.||-+|.|....
T Consensus 86 lVtG---~VT~~m~~~l~~~~e~~p~pK~VIAvGsCA~~G 122 (182)
T PRK14816 86 MVCG---TITNKMAPVLKRLYDQMADPKYVIAVGGCAVSG 122 (182)
T ss_pred EEec---CCcchhHHHHHHHHHhcCCCCEEEEeccccccC
Confidence 4677 44455556667776644 899999999998766
No 80
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=22.02 E-value=1.1e+02 Score=23.75 Aligned_cols=36 Identities=17% Similarity=-0.001 Sum_probs=27.3
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (217)
+-.| +=+-.+.--+..+|.+.+.+.|..+||+|..+
T Consensus 45 lG~w---~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~ 80 (160)
T PF12641_consen 45 LGFW---IDKGTPDKDMKEFLKKLKGKKVALFGTAGAGP 80 (160)
T ss_pred EEcC---ccCCCCCHHHHHHHHHccCCeEEEEEecCCCC
Confidence 5556 33334455667888999999999999999886
No 81
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=21.96 E-value=1.5e+02 Score=24.85 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=20.5
Q ss_pred CCcEEcccchHHHHHHHhCCCCEEEEEee
Q 027878 145 DATIKDMEGAAVAYVADLFKVPALFVKAV 173 (217)
Q Consensus 145 ~a~~vdME~aava~~a~~~~ip~~~ir~I 173 (217)
|..+--.=++.+|.+|+++++|++++--.
T Consensus 191 G~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 191 GGVVNKVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp S-EEEETTHHHHHHHHHHTT-EEEEE--G
T ss_pred CCEeehhhHHHHHHHHHhhCCCEEEEccc
Confidence 55555566689999999999999998443
No 82
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.37 E-value=1.9e+02 Score=24.64 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=22.3
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCE
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDL 60 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ 60 (217)
+.+|=+|+||...++.+...+.+.+-+.
T Consensus 4 a~~gKGGVGKTTta~nLA~~La~~G~rV 31 (290)
T CHL00072 4 AVYGKGGIGKSTTSCNISIALARRGKKV 31 (290)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 3456668999999999999998877653
No 83
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.33 E-value=1.4e+02 Score=26.19 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=23.4
Q ss_pred CCcEEcccchHHHHHHHhCCCCEEEEEee
Q 027878 145 DATIKDMEGAAVAYVADLFKVPALFVKAV 173 (217)
Q Consensus 145 ~a~~vdME~aava~~a~~~~ip~~~ir~I 173 (217)
|..+--+=++.+|.+|+.+++||+++--.
T Consensus 230 G~v~NKiGT~~lAl~Ak~~~VPfyV~a~~ 258 (329)
T PRK06371 230 GDFANKIGTYEKAVLAKVNGIPFYVAAPG 258 (329)
T ss_pred CCEeehhhHHHHHHHHHHcCCCEEEeccc
Confidence 55555666789999999999999998653
No 84
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.83 E-value=1.6e+02 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=32.4
Q ss_pred eeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878 31 NLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (217)
Q Consensus 31 ~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~ 83 (217)
.++.||-+|+||.-..++....++..+ +.++.+-+==||. --|++.+
T Consensus 5 IVvTSGKGGVGKTTttAnig~aLA~~G-kKv~liD~DiGLR-----NLDlimG 51 (272)
T COG2894 5 IVVTSGKGGVGKTTTTANIGTALAQLG-KKVVLIDFDIGLR-----NLDLIMG 51 (272)
T ss_pred EEEecCCCCcCccchhHHHHHHHHHcC-CeEEEEecCcCch-----hhhhhhc
Confidence 348899999999998888888888654 4455555544554 2456554
No 85
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=20.75 E-value=2.3e+02 Score=22.96 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=21.1
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhcCCCE
Q 027878 33 ILSEVDSVGTISASLVTYASIQALKPDL 60 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~~~~~ 60 (217)
+.++-+|+||...+..+...+.+.+-+.
T Consensus 6 v~s~kGGvGKTt~a~~lA~~la~~g~~v 33 (261)
T TIGR01968 6 ITSGKGGVGKTTTTANLGTALARLGKKV 33 (261)
T ss_pred EecCCCCccHHHHHHHHHHHHHHcCCeE
Confidence 4555667999999999888888765443
No 86
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=20.70 E-value=2.2e+02 Score=21.90 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=25.1
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.|| .=.-+.+..+.++.+.. .|+.+|.+|.|+--.
T Consensus 54 lVTG---~vT~~~~e~lkk~Yea~PePKiViA~GaCa~~G 90 (148)
T COG3260 54 LVTG---AVTRQMREPLKKAYEAMPEPKIVIAVGACALSG 90 (148)
T ss_pred EEec---cccHHHHHHHHHHHHhCCCCcEEEEEcccccCC
Confidence 5678 33445555566666655 899999999997544
No 87
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.39 E-value=89 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=21.4
Q ss_pred CCcEEcccchHHHHHHHhCCCCEEEEEe
Q 027878 145 DATIKDMEGAAVAYVADLFKVPALFVKA 172 (217)
Q Consensus 145 ~a~~vdME~aava~~a~~~~ip~~~ir~ 172 (217)
|..+--.=++.+|.+|+++++||+++-.
T Consensus 166 G~v~nkvGT~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 166 GGLIHKNGTFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred CCEeehhhHHHHHHHHHHcCCCEEEEee
Confidence 4444455568999999999999998543
No 88
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=20.04 E-value=1.5e+02 Score=23.84 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=23.7
Q ss_pred EeeCCCCcCHHHHHHHHHHHHHhc-CCCEEEEEeeecccC
Q 027878 33 ILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGGFK 71 (217)
Q Consensus 33 ~~~G~~gvG~~~Aa~~~~~li~~~-~~~~ii~~G~aG~l~ 71 (217)
+.+|- + ..+.+-.+.++.+.. +|+.||-+|.|....
T Consensus 79 lV~G~--v-t~~~~~~l~~~~e~mp~pk~VIA~GaCA~~G 115 (183)
T PRK06411 79 IVAGT--L-TNKMAPALRRLYDQMPEPKWVISMGSCANSG 115 (183)
T ss_pred EEEeC--C-CccchHHHHHHHHHcCcCCeEEEEecccccC
Confidence 35561 4 334555666666543 899999999995554
Done!