BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027881
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WKN|A Chain A, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|B Chain B, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|C Chain C, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|D Chain D, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|E Chain E, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|F Chain F, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|G Chain G, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|H Chain H, Gamma Lactamase From Delftia Acidovorans
Length = 409
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 8/182 (4%)
Query: 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
E ART+P RE+GGNCDIK+LSRGS+++ PV+VDGA LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMA 269
Query: 62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
G++ +K +I+GGM +Y NPIF+ P+ P + ++L+FEGISVDE G QHY
Sbjct: 270 GWVHMKVSLIKGGMAKYGIK--------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321
Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
LD TVAY++A LNAI+YL KFGYS Q Y LL P +G ISG+VD PNA ATL +PT I
Sbjct: 322 LDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEI 381
Query: 182 FD 183
FD
Sbjct: 382 FD 383
>pdb|2II1|A Chain A, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|B Chain B, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|C Chain C, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|D Chain D, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
Length = 301
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 12 NGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEII 71
+GGN D K++ G+ +YLPV VDGA L+ GD+H + GDGE+ CG +E++G + LK +
Sbjct: 152 HGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAXGDGEILICG-VEIAGTVTLKVNVK 210
Query: 72 R 72
+
Sbjct: 211 K 211
>pdb|3TKK|A Chain A, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
pdb|3TKK|B Chain B, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
pdb|3TKK|C Chain C, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
pdb|3TKK|D Chain D, Crystal Structure Analysis Of A Recombinant Predicted
Acetamidase Formamidase From The Thermophile
Thermoanaerobacter Tengcongensis
Length = 301
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 8 PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLK 67
PG +GGN D ++ G+++Y PVFV+GA L+ GD+H GDGEV G +E++G + L+
Sbjct: 151 PGS-HGGNMDTTLIAEGAEVYFPVFVEGALLALGDLHALMGDGEVGVSG-VEVAGKVLLE 208
Query: 68 CEIIRG 73
E+I+G
Sbjct: 209 VEVIKG 214
>pdb|2F4L|A Chain A, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
pdb|2F4L|B Chain B, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
pdb|2F4L|C Chain C, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
pdb|2F4L|D Chain D, Crystal Structure Of A Putative Acetamidase (tm0119) From
Thermotoga Maritima Msb8 At 2.50 A Resolution
Length = 297
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 9 GRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV 52
+GGN D K ++ ++LPVF +GA L+ GD+H + GDGEV
Sbjct: 152 AHRHGGNXDTKEITENVTVHLPVFQEGALLALGDVHATXGDGEV 195
>pdb|3B9T|A Chain A, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|B Chain B, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|C Chain C, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|D Chain D, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
Length = 484
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 6 TIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMS 61
++P GGN D + +G+ Y PV V G S GD H SQGD E CG AIE S
Sbjct: 306 SVPPSHFGGNIDNWRIGKGATXYYPVSVAGGLFSVGDPHASQGDSEX--CGTAIECS 360
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 94 EIGPVEPRFSE-WLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLL 152
EI P P+ S W ++ + G+ +DA +A + A+ L FG+++EQV
Sbjct: 328 EIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMSMLPSFGFTQEQV--- 384
Query: 153 LSCCPCE 159
C CE
Sbjct: 385 --ACVCE 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,710,432
Number of Sequences: 62578
Number of extensions: 290909
Number of successful extensions: 493
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 6
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)