BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027881
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1
Length = 407
Score = 226 bits (577), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 104/182 (57%), Positives = 137/182 (75%), Gaps = 8/182 (4%)
Query: 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
E ART+P R++GGNCDIKNL++GS++Y PV+V LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPRDHGGNCDIKNLTKGSRVYFPVYVKDGGLSMGDLHFSQGDGEITFCGAIEMA 269
Query: 62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
G+LD+K +I+ G+K+Y NP+F+ P+ P + ++++FEGISVDE+G QHY
Sbjct: 270 GYLDIKVGLIKDGVKKYGIK--------NPVFQPSPITPTYRDYMIFEGISVDEAGKQHY 321
Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
LD +AY++A LNAI+YL KFGYS EQ +L P EG ISGIVD PNA ATL +PT I
Sbjct: 322 LDVHIAYRQACLNAIEYLKKFGYSGEQAVSILGTAPVEGHISGIVDIPNACATLWIPTEI 381
Query: 182 FD 183
F+
Sbjct: 382 FE 383
>sp|Q9URY7|FMDA_SCHPO Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC869.04 PE=3 SV=1
Length = 410
Score = 217 bits (552), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 140/198 (70%), Gaps = 12/198 (6%)
Query: 2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
E ARTIPGR ENGGNCDIKNLSRGSK++LPV V GA LS GD+HFSQGDGE++FCGAIEM
Sbjct: 212 EGARTIPGRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIGDLHFSQGDGEISFCGAIEM 271
Query: 61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRF--SEWLVFEGISVDESGG 118
+G + +KC+I++ G+ + +P++ GPVEP F S +L FEG SVDESG
Sbjct: 272 AGSITIKCKILKNGISDLAMK--------SPMYLPGPVEPHFSPSRYLTFEGFSVDESGK 323
Query: 119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
QHYL T AY++ L I+Y +FGY+ Q+YLLLSC P +G ++GIVD PN+ T+ VP
Sbjct: 324 QHYLCTTTAYRQTCLRVIEYFRRFGYNDYQLYLLLSCAPIQGHVAGIVDIPNSCTTIGVP 383
Query: 179 TAIFDQVNTSPIFKANSI 196
IF + + SP KA I
Sbjct: 384 MDIF-EFDVSPNGKAKII 400
>sp|Q07838|AMDA_MYCSM Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2
Length = 406
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 119/160 (74%), Gaps = 8/160 (5%)
Query: 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
+ ART+P RENGGN DIKN +RGS+I+ PVFV+GA LS GD+HFSQGDGE+ FCGAIEM
Sbjct: 218 DGARTVPPRENGGNHDIKNFTRGSRIFYPVFVEGAMLSGGDLHFSQGDGEINFCGAIEMG 277
Query: 62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQH- 120
GF+D+ ++I+GGM+ Y + NPIF G VEP +SEWL F GISVD + ++
Sbjct: 278 GFIDMHVDLIKGGMETYG-------VTTNPIFMPGRVEPLYSEWLTFIGISVDHAENRNA 330
Query: 121 YLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEG 160
Y+DAT+AY+ A LNAI+YL K+GY+ EQ YL+L P EG
Sbjct: 331 YMDATMAYRNACLNAIEYLKKWGYTGEQAYLILGTSPIEG 370
>sp|Q7XA74|GDL21_ARATH GDSL esterase/lipase At1g54030 OS=Arabidopsis thaliana GN=At1g54030
PE=2 SV=1
Length = 417
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 9 GRENGGNCDIKNLSRGSKIYLPVFVDG------ANLSTGDMHFSQGDGEVTFCGAIEMSG 62
G NG NC KN+ + Y +F DG ANL G + + D EV I
Sbjct: 305 GSINGSNCSAKNVCAKPEEY--IFFDGKHLTQEANLQVGHLMWG-ADPEVIGPNNIRELM 361
Query: 63 FLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRF-SEWL 106
L L +I G++E + M P ++ +++I +E + WL
Sbjct: 362 VLPLDITVILAGIQEAMAAMRPRQSNIESLYDIKKMESEMDNHWL 406
>sp|P03589|1A_AMVLE Replication protein 1a OS=Alfalfa mosaic virus (strain 425 /
isolate Leiden) GN=ORF1a PE=3 SV=1
Length = 1126
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 83 GPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG-GQHYLDATVAYKRAVLNA----ID 137
GP+PL +P++ + ++EW +G ++D S + LD K L A ++
Sbjct: 577 GPSPLISDPVYFQSLEDVYYAEW--HQGNAIDASNYARTLLDDIRKQKEESLKAKAKEVE 634
Query: 138 YLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVAT---LAVPT 179
K + QV+ L P G+I G+ S +A LA+PT
Sbjct: 635 DAQKLNRAILQVHAYLEAHPDGGKIEGLGLSSQFIAKIPELAIPT 679
>sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g56190 PE=1 SV=3
Length = 478
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 70 IIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE-------------- 115
+I G K L+ P V P F + P+ PR SE L E + D+
Sbjct: 124 LIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVETLVASLP 183
Query: 116 SGGQHYLDATVAYKRAVLNAIDYLSKF 142
GG L+ YK N D+ K
Sbjct: 184 EGGVLLLENVRFYKEEEKNEPDFAKKL 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,122,790
Number of Sequences: 539616
Number of extensions: 3689976
Number of successful extensions: 6210
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6200
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)