Query 027881
Match_columns 217
No_of_seqs 122 out of 606
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2421 Predicted acetamidase/ 100.0 6.6E-54 1.4E-58 385.0 15.7 153 4-186 149-302 (305)
2 PF03069 FmdA_AmdA: Acetamidas 100.0 7.9E-48 1.7E-52 355.9 3.6 170 2-184 199-368 (369)
3 PF03069 FmdA_AmdA: Acetamidas 97.2 0.00035 7.6E-09 65.6 4.5 143 27-192 213-367 (369)
4 cd06154 YjgF_YER057c_UK114_lik 59.6 37 0.0008 26.3 6.2 48 104-151 21-69 (119)
5 PF03861 ANTAR: ANTAR domain; 57.1 21 0.00046 24.3 3.9 30 126-155 9-39 (56)
6 cd06152 YjgF_YER057c_UK114_lik 47.3 70 0.0015 24.9 5.9 47 104-150 11-59 (114)
7 PRK11401 putative endoribonucl 46.6 68 0.0015 25.2 5.9 46 104-149 25-71 (129)
8 TIGR03505 FimV_core FimV N-ter 40.7 5 0.00011 29.6 -1.4 19 12-32 34-52 (74)
9 TIGR02058 lin0512_fam conserve 40.3 45 0.00097 27.0 3.9 26 109-138 7-32 (116)
10 PF09585 Lin0512_fam: Conserve 40.3 45 0.00097 26.8 3.9 26 109-138 7-32 (113)
11 cd04444 DEP_PLEK2 DEP (Disheve 37.1 21 0.00046 28.5 1.6 33 134-167 36-70 (109)
12 cd02198 YjgH_like YjgH belongs 36.4 1.5E+02 0.0032 22.5 6.2 29 121-149 28-56 (111)
13 cd04442 DEP_1_DEP6 DEP (Dishev 34.1 45 0.00098 25.0 2.9 23 134-156 33-57 (82)
14 PF01042 Ribonuc_L-PSP: Endori 33.4 1.3E+02 0.0028 23.1 5.5 46 103-148 18-65 (121)
15 cd04441 DEP_2_DEP6 DEP (Dishev 29.1 54 0.0012 24.8 2.6 23 134-156 37-61 (85)
16 cd04447 DEP_BRCC3 DEP (Disheve 28.2 60 0.0013 25.2 2.7 23 134-156 34-65 (92)
17 smart00049 DEP Domain found in 27.4 73 0.0016 22.4 2.9 33 134-167 25-59 (77)
18 PF01476 LysM: LysM domain; I 26.3 37 0.0008 21.1 1.1 16 15-30 29-44 (44)
19 cd04443 DEP_GPR155 DEP (Dishev 25.9 72 0.0016 23.9 2.7 23 134-156 35-59 (83)
20 cd04448 DEP_PIKfyve DEP (Dishe 23.0 96 0.0021 23.0 2.9 23 134-156 33-57 (81)
21 cd06153 YjgF_YER057c_UK114_lik 22.8 3.2E+02 0.007 21.1 6.0 52 104-155 13-70 (114)
22 PF14698 ASL_C2: Argininosucci 22.3 86 0.0019 22.5 2.5 23 134-156 6-28 (70)
23 cd04450 DEP_RGS7-like DEP (Dis 21.4 99 0.0022 22.9 2.7 32 134-166 33-66 (88)
24 PF14748 P5CR_dimer: Pyrroline 21.3 96 0.0021 23.8 2.7 27 130-156 22-48 (107)
25 KOG4410 5-formyltetrahydrofola 20.1 20 0.00043 33.7 -1.6 29 187-215 239-268 (396)
26 COG3707 AmiR Response regulato 20.1 1.6E+02 0.0034 25.9 4.0 33 127-159 142-175 (194)
No 1
>COG2421 Predicted acetamidase/formamidase [Energy production and conversion]
Probab=100.00 E-value=6.6e-54 Score=385.00 Aligned_cols=153 Identities=42% Similarity=0.642 Sum_probs=142.4
Q ss_pred cccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCCCC
Q 027881 4 ARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMG 83 (217)
Q Consensus 4 ~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~~~ 83 (217)
++|+||++||||||+|+|++|||+||||||+||+||+||.||+|||||||+| |+|++|++|+||+|+|+.. ++
T Consensus 149 l~t~~p~~~GGNlD~k~l~~GstvylPV~V~GAllsiGD~Ha~qGDGEV~~t-aiEv~~~vTv~~~l~K~~~---~~--- 221 (305)
T COG2421 149 LSTGPPREHGGNLDIKDLTEGSTVYLPVFVEGALLSIGDLHAAQGDGEVCGT-AIEVPAEVTVKVELIKNLN---LE--- 221 (305)
T ss_pred CCCCCCCccCCcCChhhccCCCEEEEEEEEcCceeeecchhhhccCCceEEE-EEEeccEEEEEEEEecCCc---cc---
Confidence 5899999999999999999999999999999999999999999999999997 7999999999999999965 33
Q ss_pred CCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCceE
Q 027881 84 PTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEGRI 162 (217)
Q Consensus 84 ~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl~I 162 (217)
||+++|+ ++|+++ |++. |++.|+|.|+++|+++|+ +.||+++|||||||++ +|+||
T Consensus 222 ------~Pi~~t~------~~~~~~-g~~~---------~l~~A~k~a~~~~i~~l~~~~~~~~~~Ay~L~Sla-vd~rV 278 (305)
T COG2421 222 ------WPILETP------DYLITL-GSGE---------TLEKAAKQALKNMIDFLRRRNGLTREDAYMLASLA-VDLRV 278 (305)
T ss_pred ------CceEeCC------CeEEEE-eccc---------cHHHHHHHHHHHHHHHHHHhcCCCHHHhhheeeEE-EeeEE
Confidence 9999996 777775 7754 488999999999999998 5999999999999999 99999
Q ss_pred eeecCCCCeEEEEEeecccccccC
Q 027881 163 SGIVDSPNAVATLAVPTAIFDQVN 186 (217)
Q Consensus 163 sQvVd~p~~tv~~~iPk~if~~~~ 186 (217)
||+||+||++|++.+||++|++..
T Consensus 279 sq~V~~~n~~v~~~lP~~~f~~~~ 302 (305)
T COG2421 279 SQLVDVPNKTVSALLPLDIFEELV 302 (305)
T ss_pred EEEecCCccEEEEEeehHHhhhcc
Confidence 999999999999999999998754
No 2
>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3.5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.
Probab=100.00 E-value=7.9e-48 Score=355.89 Aligned_cols=170 Identities=51% Similarity=0.811 Sum_probs=120.8
Q ss_pred CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (217)
Q Consensus 2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~ 81 (217)
|+++|+||+.||||||+++|++||||||||+|+||+||+||+||+|||||||+| |||+++++|+||+|+|+.. .+
T Consensus 199 ~~~~t~~p~~~gGn~D~~~~~~G~~~~lPV~v~Ga~~~~GD~Ha~qGdgEv~~~-aie~~~~~~~~~~v~k~~~----~~ 273 (369)
T PF03069_consen 199 EALSTVPPGEHGGNMDIKELTAGSTLYLPVFVPGALLSVGDLHAAQGDGEVCGT-AIETSGEVTLRVDVIKGGL----EW 273 (369)
T ss_dssp H-BESSSEETTEEE---TTSSTTEEEEEE--STTEEEEEEEEESE--TBTTTSE-ECEE-EEEEEEEEEESSHC----SS
T ss_pred cccccccCCCccccccchhhcCCCEEEEEEEECCcEEEecccccccCCcceeeE-eeccccEEEEEEEEEeCCc----CC
Confidence 568999999999999999999999999999999999999999999999999997 7999999999999999952 20
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHccccccCce
Q 027881 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGR 161 (217)
Q Consensus 82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~eAy~L~S~a~~dl~ 161 (217)
|....|++.++|..+.+.+|++.+|.++++...+...|+..|+|+|+++||+|+.++||++++||+++|++ +|++
T Consensus 274 ----p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~a~~~~S~~-vd~~ 348 (369)
T PF03069_consen 274 ----PRLETPIFDPGPIEPHFSEWIAVSGEDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQAYLLISQA-VDLR 348 (369)
T ss_dssp ----TEEESSCEE--SESSEEE-EEEEEESSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEES-SSSC
T ss_pred ----ccccCccccCCCccccchhhhhhcCcchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHHhheEcccc-ccCC
Confidence 11113444445554444467777787766433333445556666666666777666677777777777776 6666
Q ss_pred EeeecCCCCeEEEEEeecccccc
Q 027881 162 ISGIVDSPNAVATLAVPTAIFDQ 184 (217)
Q Consensus 162 IsQvVd~p~~tv~~~iPk~if~~ 184 (217)
+||.||++|+++||++||.+
T Consensus 349 ---~Vdvpn~~v~~~lP~~If~~ 368 (369)
T PF03069_consen 349 ---IVDVPNYTVSARLPKDIFVE 368 (369)
T ss_dssp ---S-STT-EEEEEEEEGGGCSS
T ss_pred ---eecccCcEEEEECChhhccc
Confidence 88899999999999999985
No 3
>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3.5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.
Probab=97.23 E-value=0.00035 Score=65.63 Aligned_cols=143 Identities=20% Similarity=0.109 Sum_probs=84.6
Q ss_pred EEeeeeeCCeeeecc----ccccccCCcceecccceeec---eEEEEEEEEEeCCcccccCCCCCCCCCCCCeeeeCCCC
Q 027881 27 IYLPVFVDGANLSTG----DMHFSQGDGEVTFCGAIEMS---GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVE 99 (217)
Q Consensus 27 lyLPV~v~GAll~~G----D~HAaQGDGEV~g~gAiE~~---~~vtlrv~viK~~~~~~l~~~~~~~~~~~P~~et~p~~ 99 (217)
|=.+-..+|+-+|+- -.=...||+=.+. |-=|+. .++..++++.=. .+.. . ..+|++++.-..
T Consensus 213 ~D~~~~~~G~~~~lPV~v~Ga~~~~GD~Ha~q-GdgEv~~~aie~~~~~~~~~~----v~k~----~-~~~p~~~~p~~~ 282 (369)
T PF03069_consen 213 MDIKELTAGSTLYLPVFVPGALLSVGDLHAAQ-GDGEVCGTAIETSGEVTLRVD----VIKG----G-LEWPRLETPIFD 282 (369)
T ss_dssp ---TTSSTTEEEEEE--STTEEEEEEEEESE---TBTTTSEECEE-EEEEEEEE----EESS----H-CSSTEEESSCEE
T ss_pred ccchhhcCCCEEEEEEEECCcEEEeccccccc-CCcceeeEeeccccEEEEEEE----EEeC----C-cCCccccCcccc
Confidence 334444556666553 2335667776665 433544 456677777543 1331 1 458988874111
Q ss_pred CC-CCceEE-EEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-H--cCCCHHHHHHHccccccCceEeeecCCCCeEEE
Q 027881 100 PR-FSEWLV-FEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-K--FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVAT 174 (217)
Q Consensus 100 ~~-~~~~i~-~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~--~gl~~~eAy~L~S~a~~dl~IsQvVd~p~~tv~ 174 (217)
+. .+.++. ..-+ ...|+++|+++++++|..+++ + .++++.++|+|+|.+ +++.+||+||. + .
T Consensus 283 ~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~-a~~~~S~~vd~-~---~ 349 (369)
T PF03069_consen 283 PGPIEPHFSEWIAV--------SGEDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQ-AYLLISQAVDL-R---I 349 (369)
T ss_dssp --SESSEEE-EEEE--------EESSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HEEEEEESSSS-C---S
T ss_pred CCCccccchhhhhh--------cCcchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHH-hheEccccccC-C---e
Confidence 11 011111 1111 236788999999999999997 4 799999999999998 89999999994 4 2
Q ss_pred EEeecccccccCCccccc
Q 027881 175 LAVPTAIFDQVNTSPIFK 192 (217)
Q Consensus 175 ~~iPk~if~~~~~~~~~~ 192 (217)
..+|-..-....+..||.
T Consensus 350 Vdvpn~~v~~~lP~~If~ 367 (369)
T PF03069_consen 350 VDVPNYTVSARLPKDIFV 367 (369)
T ss_dssp -STT-EEEEEEEEGGGCS
T ss_pred ecccCcEEEEECChhhcc
Confidence 334555444455555553
No 4
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=59.59 E-value=37 Score=26.28 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=33.6
Q ss_pred ceEEEEee-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 027881 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYL 151 (217)
Q Consensus 104 ~~i~~~G~-~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~eAy~ 151 (217)
.++.++|- ..|.++.....|+.+.++.+++|+...|++.|.+..+...
T Consensus 21 ~~l~vSGq~~~d~~~~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dVvk 69 (119)
T cd06154 21 NWVFVSGTTGYDYDGMVMPGDAYEQTRQCLEIIEAALAEAGASLEDVVR 69 (119)
T ss_pred CEEEEeCcCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 45555553 2333333334589999999999999999989988876533
No 5
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=57.11 E-value=21 Score=24.34 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHH-HcCCCHHHHHHHccc
Q 027881 126 VAYKRAVLNAIDYLS-KFGYSKEQVYLLLSC 155 (217)
Q Consensus 126 ~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~ 155 (217)
...|..+..+...|. .+|+|.++||.++--
T Consensus 9 l~~r~~I~~AkgiLm~~~g~~e~~A~~~Lr~ 39 (56)
T PF03861_consen 9 LESRRVIEQAKGILMARYGLSEDEAYRLLRR 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 456778889999997 699999999988643
No 6
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=47.32 E-value=70 Score=24.86 Aligned_cols=47 Identities=26% Similarity=0.167 Sum_probs=33.4
Q ss_pred ceEEEEe-eccCCCCCcccCCHHHHHHHHHHHHHHHHHHcC-CCHHHHH
Q 027881 104 EWLVFEG-ISVDESGGQHYLDATVAYKRAVLNAIDYLSKFG-YSKEQVY 150 (217)
Q Consensus 104 ~~i~~~G-~~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~g-l~~~eAy 150 (217)
.|+.+|| ...|.++..-..|..+=++.+++|+-..|++.| .+.++..
T Consensus 11 ~~v~~SGq~g~d~~g~~~~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVv 59 (114)
T cd06152 11 DRIEISGQGGWDPDTGKIPEDLEEEIDQAFDNVELALKAAGGKGWEQVY 59 (114)
T ss_pred CEEEEeccCCcCCCCCccCcCHHHHHHHHHHHHHHHHHHhCCCCHHHEE
Confidence 3555555 333444433345888999999999999999888 8887763
No 7
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=46.64 E-value=68 Score=25.21 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=32.1
Q ss_pred ceEEEEee-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 027881 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQV 149 (217)
Q Consensus 104 ~~i~~~G~-~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~eA 149 (217)
.++.+||- ..+.+++.-.-|+.+.++.+++|+...|++.|.+..+.
T Consensus 25 ~~v~vSGq~~~d~~~~~~~~d~~~Q~~~~~~ni~~~L~aaG~~~~~V 71 (129)
T PRK11401 25 SMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDI 71 (129)
T ss_pred CEEEEcCcCCccCCCCccCcCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 55655553 22332333235888999999999999998888888765
No 8
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=40.68 E-value=5 Score=29.63 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.4
Q ss_pred CcccccccCCCCCcEEEeeee
Q 027881 12 NGGNCDIKNLSRGSKIYLPVF 32 (217)
Q Consensus 12 ~GGNmD~~~l~~GstlyLPV~ 32 (217)
.+||+ +.|.+|++|.+|..
T Consensus 34 ~~~ni--n~L~~G~~L~iP~~ 52 (74)
T TIGR03505 34 IGGNI--NRLKVGQILRIPSE 52 (74)
T ss_pred hcCCh--hhcCCCCEEeCCCH
Confidence 48888 68999999999974
No 9
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=40.27 E-value=45 Score=26.97 Aligned_cols=26 Identities=50% Similarity=0.463 Sum_probs=19.9
Q ss_pred EeeccCCCCCcccCCHHHHHHHHHHHHHHH
Q 027881 109 EGISVDESGGQHYLDATVAYKRAVLNAIDY 138 (217)
Q Consensus 109 ~G~~~de~~~~~~ldl~~A~r~A~~~mi~~ 138 (217)
+|...| .|.-|.+.|+++|++++|..
T Consensus 7 mGmG~D----lhGqD~TkAA~RAvrDAI~h 32 (116)
T TIGR02058 7 MGMGVD----QHGQNITKAAMRAVRNAIAS 32 (116)
T ss_pred eccccc----ccCccHHHHHHHHHHHHHhh
Confidence 355555 24568899999999999986
No 10
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=40.27 E-value=45 Score=26.83 Aligned_cols=26 Identities=42% Similarity=0.332 Sum_probs=19.9
Q ss_pred EeeccCCCCCcccCCHHHHHHHHHHHHHHH
Q 027881 109 EGISVDESGGQHYLDATVAYKRAVLNAIDY 138 (217)
Q Consensus 109 ~G~~~de~~~~~~ldl~~A~r~A~~~mi~~ 138 (217)
+|...| .|.-|.+.|+.+|++++|..
T Consensus 7 ~GmG~D----lhGqD~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 7 MGMGND----LHGQDYTKAAVRAVRDAISH 32 (113)
T ss_pred eccccc----ccCCcHHHHHHHHHHHHHhh
Confidence 355555 24558899999999999987
No 11
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=37.13 E-value=21 Score=28.47 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHH-H-cCCCHHHHHHHccccccCceEeeecC
Q 027881 134 NAIDYLS-K-FGYSKEQVYLLLSCCPCEGRISGIVD 167 (217)
Q Consensus 134 ~mi~~L~-~-~gl~~~eAy~L~S~a~~dl~IsQvVd 167 (217)
++++||. . .-.+|.||.++++.- .|-.+=|-|.
T Consensus 36 e~VDWLv~~~~~i~R~EAv~l~q~L-md~gli~hV~ 70 (109)
T cd04444 36 ALVDWLISNSFAASRLEAVTLASML-MEENFLRPVG 70 (109)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhCCchhhHH
Confidence 7888996 3 788999999999986 7876666554
No 12
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=36.41 E-value=1.5e+02 Score=22.51 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 027881 121 YLDATVAYKRAVLNAIDYLSKFGYSKEQV 149 (217)
Q Consensus 121 ~ldl~~A~r~A~~~mi~~L~~~gl~~~eA 149 (217)
..|+.+.++.+++|+...|++.|.+..+.
T Consensus 28 ~~d~~~Q~~~~~~ni~~~L~~aG~~~~dv 56 (111)
T cd02198 28 AEDFEAQFRLAFQNLGAVLEAAGCSFDDV 56 (111)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 45888999999999999999889988754
No 13
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=34.13 E-value=45 Score=25.04 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.4
Q ss_pred HHHHHHHHc--CCCHHHHHHHcccc
Q 027881 134 NAIDYLSKF--GYSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~~~--gl~~~eAy~L~S~a 156 (217)
+|++||.+. ..+++||-+++..-
T Consensus 33 elVdWL~~~~~~~sR~eAv~lgq~L 57 (82)
T cd04442 33 ELIDWLIEHKEASDRETAIKIMQKL 57 (82)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 789999753 46999999988854
No 14
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=33.44 E-value=1.3e+02 Score=23.12 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=31.6
Q ss_pred CceEEEEeec-cCC-CCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 103 SEWLVFEGIS-VDE-SGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 103 ~~~i~~~G~~-~de-~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.+|+.++|.. .|. .+.....|+++-++.+++++-..|++.|.+..+
T Consensus 18 g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni~~~L~~~G~~~~d 65 (121)
T PF01042_consen 18 GDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNIERILAAAGASLDD 65 (121)
T ss_dssp TTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred CCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhhhhhhhcCCCccee
Confidence 4566555532 231 222236788999999999999999988988766
No 15
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=29.05 E-value=54 Score=24.85 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHHHHcC--CCHHHHHHHcccc
Q 027881 134 NAIDYLSKFG--YSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~~~g--l~~~eAy~L~S~a 156 (217)
++++||.+.| -+++||-.++..-
T Consensus 37 ElVdWL~~~~~~~sR~eAv~lgq~L 61 (85)
T cd04441 37 EFIDWLLQEGEAESRREAVQLCRRL 61 (85)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7899997655 5999999988754
No 16
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=28.15 E-value=60 Score=25.23 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.4
Q ss_pred HHHHHHHHc---------CCCHHHHHHHcccc
Q 027881 134 NAIDYLSKF---------GYSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~~~---------gl~~~eAy~L~S~a 156 (217)
+|++||.++ .+|+.+|..||..-
T Consensus 34 EAVDwL~~~l~~n~~fg~~vtR~~av~l~qkl 65 (92)
T cd04447 34 EAVDWLHELLRSNSNFGPEVTRQQTVQLLKKF 65 (92)
T ss_pred HHHHHHHHHHHhccccCCCCCHHHHHHHHHHH
Confidence 678888643 89999999997764
No 17
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=27.45 E-value=73 Score=22.41 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHHHc--CCCHHHHHHHccccccCceEeeecC
Q 027881 134 NAIDYLSKF--GYSKEQVYLLLSCCPCEGRISGIVD 167 (217)
Q Consensus 134 ~mi~~L~~~--gl~~~eAy~L~S~a~~dl~IsQvVd 167 (217)
++++||.+. -.+++||..++..- .+.++=+-|+
T Consensus 25 e~v~wL~~~~~~~~r~eA~~l~~~l-l~~g~i~~v~ 59 (77)
T smart00049 25 ELVDWLMDNLEIIDREEAVHLGQLL-LDEGLIHHVN 59 (77)
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHH-HHCCCEEEeC
Confidence 678899753 35999999998875 5554444444
No 18
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=26.30 E-value=37 Score=21.12 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.8
Q ss_pred cccccCCCCCcEEEee
Q 027881 15 NCDIKNLSRGSKIYLP 30 (217)
Q Consensus 15 NmD~~~l~~GstlyLP 30 (217)
++++..|.+|.+|.+|
T Consensus 29 ~~~~~~l~~G~~l~iP 44 (44)
T PF01476_consen 29 NIDSDNLQPGQKLCIP 44 (44)
T ss_dssp TTHGGCGGTTEEEEEC
T ss_pred CCCcccCCCCCEEEeC
Confidence 5677779999999998
No 19
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=25.94 E-value=72 Score=23.90 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHHHHHHc--CCCHHHHHHHcccc
Q 027881 134 NAIDYLSKF--GYSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~~~--gl~~~eAy~L~S~a 156 (217)
++++||.+. --|++||..+...-
T Consensus 35 elVdWL~~~~~~~sR~eAv~lg~~L 59 (83)
T cd04443 35 DLVSWLIEVGLAQDRGEAVLYGRRL 59 (83)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 789999753 47999999998854
No 20
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=23.03 E-value=96 Score=22.96 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.5
Q ss_pred HHHHHHHH--cCCCHHHHHHHcccc
Q 027881 134 NAIDYLSK--FGYSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~~--~gl~~~eAy~L~S~a 156 (217)
++++||.+ .-.+++||-.++..-
T Consensus 33 elVdWL~~~~~~~~R~eAv~~gq~L 57 (81)
T cd04448 33 ELVNWLIRQGKAATRVQAIAIGQAL 57 (81)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 78999964 458999999988753
No 21
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.82 E-value=3.2e+02 Score=21.11 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=33.7
Q ss_pred ceEEEEeec-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHccc
Q 027881 104 EWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYS-----KEQVYLLLSC 155 (217)
Q Consensus 104 ~~i~~~G~~-~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~-----~~eAy~L~S~ 155 (217)
.|+-+||-. .|.++.....|..+-++.+++|+-..|++.|++ .++...+-..
T Consensus 13 ~~v~vSGq~~~d~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vy 70 (114)
T cd06153 13 THLFISGTASIVGHGTVHPGDVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKVY 70 (114)
T ss_pred cEEEEEeECcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEE
Confidence 344444432 222333334588899999999999999999988 6665443333
No 22
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=22.28 E-value=86 Score=22.52 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCHHHHHHHcccc
Q 027881 134 NAIDYLSKFGYSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~~~gl~~~eAy~L~S~a 156 (217)
++.+||.+.|+++-+|+.+.+..
T Consensus 6 dlAD~LVr~GipFR~AH~iVg~~ 28 (70)
T PF14698_consen 6 DLADYLVRKGIPFREAHHIVGRL 28 (70)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 67789975599999999998886
No 23
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=21.38 E-value=99 Score=22.95 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=23.3
Q ss_pred HHHHHHHH--cCCCHHHHHHHccccccCceEeeec
Q 027881 134 NAIDYLSK--FGYSKEQVYLLLSCCPCEGRISGIV 166 (217)
Q Consensus 134 ~mi~~L~~--~gl~~~eAy~L~S~a~~dl~IsQvV 166 (217)
++++||.+ .-.+++||..+++.- .+..+=.-|
T Consensus 33 ~~v~WL~~~~~~~~~~EA~~~~~~l-l~~gli~~V 66 (88)
T cd04450 33 AIVQWLMDCTDVVDPSEALEIAALF-VKYGLITPV 66 (88)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HHCCCEEEe
Confidence 67889974 349999999999886 565544433
No 24
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=21.31 E-value=96 Score=23.84 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHcccc
Q 027881 130 RAVLNAIDYLSKFGYSKEQVYLLLSCC 156 (217)
Q Consensus 130 ~A~~~mi~~L~~~gl~~~eAy~L~S~a 156 (217)
.-++.|++|..+.||++++|..+....
T Consensus 22 ~~~eal~~a~v~~Gl~~~~A~~lv~~t 48 (107)
T PF14748_consen 22 LFIEALADAAVAQGLPREEARKLVAQT 48 (107)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455678888878999999999887653
No 25
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.13 E-value=20 Score=33.67 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=20.6
Q ss_pred CcccccCCCeEEeeecccee-eeeeecccc
Q 027881 187 TSPIFKANSIYTTLLYDARL-LLNITRSIK 215 (217)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 215 (217)
..++=|.||+|-.++++-|| .+-|.|++|
T Consensus 239 ~~~~pkP~GiyW~klS~e~l~~ipiLr~Lk 268 (396)
T KOG4410|consen 239 PKRLPKPNGIYWEKLSEERLKIIPILRQLK 268 (396)
T ss_pred CCCCCCCCccchhhcCHHHHhhhHHHHHHH
Confidence 44566789999999998886 345555544
No 26
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.07 E-value=1.6e+02 Score=25.89 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHH-HcCCCHHHHHHHccccccC
Q 027881 127 AYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCE 159 (217)
Q Consensus 127 A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~d 159 (217)
+-|.-+.++=..|. ++|+|.+|||.++.-.+.|
T Consensus 142 ~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM~ 175 (194)
T COG3707 142 EERKVIERAKGLLMKRRGLSEEEAYKLLRRTAMD 175 (194)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 44555666667776 7999999999998765333
Done!