Query 027881
Match_columns 217
No_of_seqs 122 out of 606
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wkn_A Formamidase, gamma-lact 100.0 1.9E-59 6.4E-64 436.5 17.7 179 2-189 210-389 (409)
2 2ii1_A Acetamidase; 10172637, 100.0 8.2E-58 2.8E-62 411.4 15.6 155 2-187 142-297 (301)
3 2f4l_A Acetamidase, putative; 100.0 2.5E-57 8.7E-62 407.5 14.9 151 2-184 145-296 (297)
4 3mjj_A Predicted acetamidase/f 100.0 2.3E-57 7.7E-62 408.5 14.6 155 2-187 144-299 (301)
5 3b9t_A Twin-arginine transloca 100.0 1.7E-54 5.9E-59 409.9 16.8 169 2-184 302-481 (484)
6 3c8l_A FTSZ-like protein of un 37.4 28 0.00097 27.2 3.5 30 105-138 7-36 (122)
7 1jd1_A Hypothetical 13.9 kDa p 33.4 80 0.0027 23.6 5.5 44 104-147 28-72 (129)
8 2cvl_A TTHA0137, protein trans 32.6 87 0.003 23.2 5.5 45 104-148 24-69 (124)
9 2dyy_A UPF0076 protein PH0854; 30.7 97 0.0033 23.0 5.5 45 104-148 25-71 (126)
10 2b33_A Protein synthesis inhib 28.0 1.1E+02 0.0037 23.6 5.5 45 104-148 37-83 (140)
11 3quw_A Protein MMF1; chorismat 26.6 1.1E+02 0.0039 23.9 5.5 45 104-148 52-97 (153)
12 1qd9_A Purine regulatory prote 26.2 1.1E+02 0.0036 22.8 5.0 45 104-148 24-69 (124)
13 3vcz_A Endoribonuclease L-PSP; 23.7 1.1E+02 0.0037 24.0 4.8 44 104-147 49-93 (153)
14 1x25_A Hypothetical UPF0076 pr 23.3 1.1E+02 0.0037 22.9 4.6 28 121-148 46-73 (128)
15 3r0p_A L-PSP putative endoribo 22.5 1.6E+02 0.0056 21.7 5.5 45 104-148 27-73 (127)
16 1qah_A Perchloric acid soluble 22.3 1.6E+02 0.0056 22.1 5.5 45 104-148 28-74 (136)
17 1fsh_A Dishevelled-1; three-he 21.7 55 0.0019 24.2 2.5 23 134-156 55-80 (105)
18 1xrg_A Putative translation in 20.1 1.6E+02 0.0053 23.1 5.1 45 104-148 56-102 (156)
19 2cso_A Pleckstrin; DEP domain, 20.0 56 0.0019 25.4 2.4 26 134-160 52-79 (127)
No 1
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=100.00 E-value=1.9e-59 Score=436.50 Aligned_cols=179 Identities=61% Similarity=1.095 Sum_probs=164.7
Q ss_pred CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCccc-ccC
Q 027881 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKE-YLT 80 (217)
Q Consensus 2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~-~l~ 80 (217)
|++||+||++||||||||+|++||||||||+|+|||||+||+||+|||||||+|||||+++++||||+|+|+++.+ .+.
T Consensus 210 e~~~TvpP~~hGGNmDik~l~~GstlYLPV~V~GAlfsvGD~HaaQGDGEI~~cgAiE~s~~vtl~v~viK~~~~~~~l~ 289 (409)
T 2wkn_A 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMAGWVHMKVSLIKGGMAKYGIK 289 (409)
T ss_dssp HCBCSSSEETTEESCCCTTSCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTEEEEEECCEEEEEEEEEETTHHHHTTCS
T ss_pred ccccccCCCCccccccchhccCCcEEEEEEEecCceEeccCchhccCCCccccceeeecceEEEEEEEEEcCcccccCCC
Confidence 4789999999999999999999999999999999999999999999999999998999999999999999995321 133
Q ss_pred CCCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHccccccCc
Q 027881 81 PMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEG 160 (217)
Q Consensus 81 ~~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~eAy~L~S~a~~dl 160 (217)
+|++++++..|.+++|++++|++.|++|.++++|+++|+|+|+++||+||+++|||++|||+|||+|.+|+
T Consensus 290 ---------~P~~e~~~~~p~~~~~li~~G~~~d~~g~~~~ld~~~A~r~A~~~~i~~L~~~Gls~~eAy~LlS~a~~d~ 360 (409)
T 2wkn_A 290 ---------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQG 360 (409)
T ss_dssp ---------SCEEECCSCCBCCCCEEEEEEESBCTTCCBCSSCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHSCCEE
T ss_pred ---------CCeecCCCCCCccCcEEEEEeeccccccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCcccccc
Confidence 89999987776557787778999999999999999999999999999999989999999999999964799
Q ss_pred eEeeecCCCCeEEEEEeecccccccCCcc
Q 027881 161 RISGIVDSPNAVATLAVPTAIFDQVNTSP 189 (217)
Q Consensus 161 ~IsQvVd~p~~tv~~~iPk~if~~~~~~~ 189 (217)
+||||||.||++|++.|||+||+..+.|.
T Consensus 361 rIsqVVD~pn~~v~~~lP~~if~~~~~p~ 389 (409)
T 2wkn_A 361 HISGVVDVPNACATLWLPTEIFDFDINPT 389 (409)
T ss_dssp EEEESCSTTCCEEEEEEEGGGBSSCCSCC
T ss_pred EeccEecCCCcEEEEEeEHHHcccccCCC
Confidence 99999999999999999999999877766
No 2
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=100.00 E-value=8.2e-58 Score=411.38 Aligned_cols=155 Identities=29% Similarity=0.495 Sum_probs=143.5
Q ss_pred CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (217)
Q Consensus 2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~ 81 (217)
++++|+||++||||||+|+|++||||||||+|+|||||+||+||+|||||||+| |||+++++|+||+|+|+.. ++
T Consensus 142 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~v~GAl~s~GD~Ha~QGDGEv~~t-aiE~~~~vt~~v~viK~~~---l~- 216 (301)
T 2ii1_A 142 EPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILIC-GVEIAGTVTLKVNVKKERM---FP- 216 (301)
T ss_dssp SCEETTSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CSEECEEEEEEEEEESSCC---SC-
T ss_pred CCcCcCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcceee-EEEeeeEEEEEEEEECCCC---CC-
Confidence 578999999999999999999999999999999999999999999999999997 5999999999999999853 33
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCc
Q 027881 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (217)
Q Consensus 82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl 160 (217)
||++|++ ++|+++ |++.| |++|+|+|+++|++||+ ++|||++|||||||++ +|+
T Consensus 217 --------~P~~et~------~~~~~~-G~~~d---------l~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~ 271 (301)
T 2ii1_A 217 --------LPALKTD------THFMTI-ASAET---------LDAAAVQATKNMATFLANRTALSIEEAGMLLSGA-GDL 271 (301)
T ss_dssp --------SSEEECS------SEEEEE-EEESS---------HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH-CEE
T ss_pred --------CCEEECC------CcEEEE-EECCC---------HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence 9999996 677765 88654 88999999999999997 6999999999999999 999
Q ss_pred eEeeecCCCCeEEEEEeecccccccCC
Q 027881 161 RISGIVDSPNAVATLAVPTAIFDQVNT 187 (217)
Q Consensus 161 ~IsQvVd~p~~tv~~~iPk~if~~~~~ 187 (217)
+|||+|| ||++|++.|||++|++.+.
T Consensus 272 ~IsqvVd-p~~~v~~~ipk~if~~~g~ 297 (301)
T 2ii1_A 272 YVSQIVN-PLKTARFSLALHYFEKLGV 297 (301)
T ss_dssp EEEESSS-SSEEEEEEEEHHHHHHTTC
T ss_pred EEEEecC-CCeEEEEEEEHHHhhhcCC
Confidence 9999999 9999999999999987654
No 3
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=100.00 E-value=2.5e-57 Score=407.54 Aligned_cols=151 Identities=26% Similarity=0.408 Sum_probs=140.6
Q ss_pred CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (217)
Q Consensus 2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~ 81 (217)
++++|+||++||||||||+|++||||||||+|+|||||+||+||+|||||||+| |||+++++|+||+|+|+ . ++
T Consensus 145 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~V~GAl~s~GD~HaaQGDGEv~~t-aiE~~~~vtl~v~viK~-~---l~- 218 (297)
T 2f4l_A 145 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKE-E---IK- 218 (297)
T ss_dssp SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECC-C---CS-
T ss_pred cCcCCCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcccee-EEEeeeEEEEEEEEeCC-C---CC-
Confidence 568999999999999999999999999999999999999999999999999997 59999999999999998 3 44
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCc
Q 027881 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (217)
Q Consensus 82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl 160 (217)
||++|++ ++|+++ |++.| |++|+|+|+++|++||+ ++|||++|||+|||++ +|+
T Consensus 219 --------~P~~et~------~~~~~~-G~~~d---------l~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~ 273 (297)
T 2f4l_A 219 --------WPVVETN------DAYYII-VSLPD---------IEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV 273 (297)
T ss_dssp --------SCEEECS------SEEEEE-EEESS---------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred --------CCEEECC------CcEEEE-EECCC---------HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence 9999996 677765 88754 88999999999999997 6999999999999999 999
Q ss_pred eEeeecCCCCeEEEEEeecccccc
Q 027881 161 RISGIVDSPNAVATLAVPTAIFDQ 184 (217)
Q Consensus 161 ~IsQvVd~p~~tv~~~iPk~if~~ 184 (217)
+|||+|| ||++|++.|||++|++
T Consensus 274 ~IsqvVd-pn~~v~~~ipk~if~~ 296 (297)
T 2f4l_A 274 GISQLVN-PAKTAKARIPKYIFTG 296 (297)
T ss_dssp EEEESSS-SSEEEEEEEEGGGTC-
T ss_pred EEEEEcC-CCeEEEEEEEHHHccC
Confidence 9999999 9999999999999985
No 4
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=100.00 E-value=2.3e-57 Score=408.45 Aligned_cols=155 Identities=29% Similarity=0.450 Sum_probs=143.9
Q ss_pred CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (217)
Q Consensus 2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~ 81 (217)
++++|+|||+||||||||+|++||||||||+|+|||||+||+||+|||||||+| |||+++++|+||+|+|+.. ++
T Consensus 144 ~~~~t~~P~~~GGNmD~~~l~~GstlylPV~v~GAlls~GD~HaaQGDGEv~~t-aiE~~~~vt~~v~viK~~~---~~- 218 (301)
T 3mjj_A 144 GSINCGTPGSHGGNMDTTLIAEGAEVYFPVFVEGALLALGDLHALMGDGEVGVS-GVEVAGKVLLEVEVIKGLN---LK- 218 (301)
T ss_dssp SCEETTCEETTEEECCCTTCSTTCEEEEECCSTTCCEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECSCC---CS-
T ss_pred cCcCcCCCCCcccccChhhhcCCCEEEEEEEeCCeEEEecCceeccCCCceeee-EEeeceEEEEEEEEecCCC---CC-
Confidence 578999999999999999999999999999999999999999999999999997 6999999999999999853 33
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCc
Q 027881 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (217)
Q Consensus 82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl 160 (217)
+|++|++ ++|+++ |++. ||++|+|+|+++||+||+ ++|||++|||+|||++ +|+
T Consensus 219 --------~P~~et~------~~~~~~-g~~~---------~ld~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~ 273 (301)
T 3mjj_A 219 --------NPVVKTA------EVTATI-ASAE---------SLDKAVEIAVHDMAELFKKHTDLSTEGIATLFSIT-GNA 273 (301)
T ss_dssp --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CEE
T ss_pred --------CCEEECC------CcEEEE-EeCC---------CHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHhHhh-cCc
Confidence 9999996 889987 6554 478999999999999997 5999999999999999 899
Q ss_pred eEeeecCCCCeEEEEEeecccccccCC
Q 027881 161 RISGIVDSPNAVATLAVPTAIFDQVNT 187 (217)
Q Consensus 161 ~IsQvVd~p~~tv~~~iPk~if~~~~~ 187 (217)
+|||||| ||++|++.|||++|++.+.
T Consensus 274 ~IsqvVd-p~~~v~~~ipk~i~~~~g~ 299 (301)
T 3mjj_A 274 QISQVVD-PLKTARFSLPNWILESYGI 299 (301)
T ss_dssp EEEESSS-SSEEEEEEEEHHHHHHTTC
T ss_pred EEEEecC-CCeEEEEEEEHHHhHhhCc
Confidence 9999999 9999999999999998764
No 5
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=100.00 E-value=1.7e-54 Score=409.88 Aligned_cols=169 Identities=27% Similarity=0.351 Sum_probs=144.9
Q ss_pred CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (217)
Q Consensus 2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~ 81 (217)
+.++|+||++||||||||+|++||||||||+|+|||||+||+||+|||||||+| |||+++++||||+|+|+.... -+.
T Consensus 302 ~~~~TvpP~~hGGNmDik~L~~GStlYLPV~V~GAlfsvGD~HaaQGDGEvcGT-AIE~s~~vtl~v~ViK~~~~~-g~~ 379 (484)
T 3b9t_A 302 DLVNSVPPSHFGGNIDNWRIGKGATMYYPVSVAGGLFSVGDPHASQGDSEMCGT-AIECSLTGTFQFILHKKADLP-GTP 379 (484)
T ss_dssp SSEESSSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEEEECCTBCTTSC-CEECCEEEEEEEEEECGGGCT-TST
T ss_pred CCCCCCCCCCcCCccchhhhcCCcEEEEEEEecCceEeccCcccccCCCcccce-EEeeceEEEEEEEEEcCCccc-ccc
Confidence 567999999999999999999999999999999999999999999999999885 799999999999999985410 000
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCC----CCCc------ccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Q 027881 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE----SGGQ------HYLDATVAYKRAVLNAIDYLS-KFGYSKEQVY 150 (217)
Q Consensus 82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de----~~~~------~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy 150 (217)
. ....+|++||. ++|+++ |+++++ .+.+ ...||++|+|+|+++||+||+ ++|||++|||
T Consensus 380 ~---~~l~~P~~et~------~~~i~~-G~s~~~~l~~~g~~~~~~i~~~~~Ld~A~r~A~~~mi~~L~~~~Gls~~eAy 449 (484)
T 3b9t_A 380 L---ADLQYPLLETQ------DEWVLH-GFSYANYLAELGPDAQNSIFSKSSLDLALKDAFRKMRHFLMQTQNLTEDEAV 449 (484)
T ss_dssp T---TTCCSCEEECS------SEEEEE-EESSTTHHHHHGGGHHHHHHHHCCHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred c---cCCCCCccCCC------CeEEEE-EeccccchhhcccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 0 11128999996 889864 997642 2221 014788999999999999997 7999999999
Q ss_pred HHccccccCceEeeecCCCCeEEEEEeecccccc
Q 027881 151 LLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQ 184 (217)
Q Consensus 151 ~L~S~a~~dl~IsQvVd~p~~tv~~~iPk~if~~ 184 (217)
+|||+| +|++|||||| ||++|++.|||++|++
T Consensus 450 ~LlS~a-~d~~IsQVVD-~n~~v~~~ipk~if~~ 481 (484)
T 3b9t_A 450 SLMSIG-VDFGITQVVD-GNWGVHAVVKKGIFPG 481 (484)
T ss_dssp HHHHHS-CEEEEEESSS-SSCEEEEEEEGGGCCC
T ss_pred HHHHhh-cCceEEEEeC-CCeEEEEEEEHHHccc
Confidence 999999 9999999999 6999999999999975
No 6
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=37.37 E-value=28 Score=27.20 Aligned_cols=30 Identities=40% Similarity=0.496 Sum_probs=22.0
Q ss_pred eEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHH
Q 027881 105 WLVFEGISVDESGGQHYLDATVAYKRAVLNAIDY 138 (217)
Q Consensus 105 ~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~ 138 (217)
+++=+|...| +|.-|.+.|+++|++++|..
T Consensus 7 ~~iEmGmG~D----lhGqD~TkAA~RAvrDAI~~ 36 (122)
T 3c8l_A 7 LIIEMGMGID----QHGQEPTIAASRAVRNAIAH 36 (122)
T ss_dssp EEEEEEEEEE----SSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEeccccc----ccCccHHHHHHHHHHHHHhh
Confidence 3332466666 35568999999999999977
No 7
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=33.39 E-value=80 Score=23.62 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=29.9
Q ss_pred ceEEEEee-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHH
Q 027881 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKE 147 (217)
Q Consensus 104 ~~i~~~G~-~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~ 147 (217)
.++.+||- ..+.++....-|..+.+|.+++|+...|++.|.+..
T Consensus 28 ~~l~vSGq~~~~~~g~~~~g~~~~Q~~~~l~ni~~~L~~aG~~~~ 72 (129)
T 1jd1_A 28 NLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLD 72 (129)
T ss_dssp TEEEEEEECSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred CEEEEeeeCCcCCCCCCcCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45555663 233333333457889999999999999988787653
No 8
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=32.56 E-value=87 Score=23.21 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=30.3
Q ss_pred ceEEEEee-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~-~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.+||- ..+.++....-|..+.+|.+++|+...|++.|.+.++
T Consensus 24 ~~~~vSGq~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~~~~ 69 (124)
T 2cvl_A 24 GFVFVSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSGLSR 69 (124)
T ss_dssp TEEEEEEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 44445563 2333333334688899999999999999888866654
No 9
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=30.73 E-value=97 Score=23.01 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=30.7
Q ss_pred ceEEEEee-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~-~~de~-~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++-+||- ..+.+ +.....|..+.+|.+++|+...|++.|.+.++
T Consensus 25 ~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~ 71 (126)
T 2dyy_A 25 NFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLND 71 (126)
T ss_dssp TEEEEEEECSBCTTTCSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45545663 33332 32233688899999999999999888876654
No 10
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=27.99 E-value=1.1e+02 Score=23.56 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=30.7
Q ss_pred ceEEEEee-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~-~~de~-~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.+||- ..+.+ +.....|..+.+|.+++|+...|++.|.+.++
T Consensus 37 ~~lfvSGq~~~d~~tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~ 83 (140)
T 2b33_A 37 NMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKD 83 (140)
T ss_dssp TEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEEeeCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45555663 33332 22223588899999999999999888877654
No 11
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=26.64 E-value=1.1e+02 Score=23.92 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=30.8
Q ss_pred ceEEEEeec-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~~-~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.+||-. .|.++....-|+.+.+|.+++++...|++.|.+.++
T Consensus 52 ~~lfvSGq~~~d~~g~~~~gdi~~Qt~~~l~Ni~a~L~~aG~~l~d 97 (153)
T 3quw_A 52 NFVYVSGQIPYTPDNKPVQGSISEKAEQVFQNVKNILAESNSSLDN 97 (153)
T ss_dssp TEEEEEEECSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 455555642 333333334578899999999999999888877654
No 12
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=26.24 E-value=1.1e+02 Score=22.78 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=29.8
Q ss_pred ceEEEEee-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~-~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.+||- ..|.++.....|..+.++.+++|+...|++.|.+.++
T Consensus 24 ~~v~vSGq~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~ 69 (124)
T 1qd9_A 24 NMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFET 69 (124)
T ss_dssp TEEEECCBCSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 44545553 2232232223578899999999999999888876653
No 13
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=23.70 E-value=1.1e+02 Score=23.98 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=29.8
Q ss_pred ceEEEEeec-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHH
Q 027881 104 EWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKE 147 (217)
Q Consensus 104 ~~i~~~G~~-~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~ 147 (217)
.++.+||-- .|.+++.-.-|..+.+|.+++|+...|++.|.+.+
T Consensus 49 ~~lfvSGq~~~d~~~g~v~~d~~~Qt~~~l~nl~a~L~~aG~~l~ 93 (153)
T 3vcz_A 49 NMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVG 93 (153)
T ss_dssp SEEEECCBCSCCTTTCCCCSSHHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CEEEEeeecccCCCCCeeCcCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455556632 33333333358899999999999999988787653
No 14
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=23.29 E-value=1.1e+02 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 121 YLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 121 ~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.-|..+.+|.+++|+...|++.|.+.++
T Consensus 46 ~~~~~~Q~~~~l~ni~~~L~~ag~~l~~ 73 (128)
T 1x25_A 46 KGDIKVQTRQVLDNIKEIVKAAGFSLSD 73 (128)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CccHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3578899999999999999888877655
No 15
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=22.49 E-value=1.6e+02 Score=21.72 Aligned_cols=45 Identities=13% Similarity=-0.040 Sum_probs=30.1
Q ss_pred ceEEEEeec-cCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGIS-VDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~~-~de~-~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.+||-. .+.+ +....-|..+.+|.+++|+...|++.|.+.++
T Consensus 27 ~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~ 73 (127)
T 3r0p_A 27 NTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRD 73 (127)
T ss_dssp TEEEEEEECSBCTTTSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CEEEEeccCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 455555632 2332 22223588899999999999999888876654
No 16
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=22.28 E-value=1.6e+02 Score=22.14 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=30.4
Q ss_pred ceEEEEee-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~-~~de~-~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.+||- ..+.+ +....-|..+.+|.+++|+...|++.|.+.++
T Consensus 28 ~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~ 74 (136)
T 1qah_A 28 RTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTN 74 (136)
T ss_dssp TEEEEEEECCBCTTTCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45555563 23322 22224588999999999999999888877654
No 17
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=21.73 E-value=55 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHHH-Hc-C-CCHHHHHHHcccc
Q 027881 134 NAIDYLS-KF-G-YSKEQVYLLLSCC 156 (217)
Q Consensus 134 ~mi~~L~-~~-g-l~~~eAy~L~S~a 156 (217)
++++||. .. + .+++||..+++.-
T Consensus 55 dlVdWL~~~~~~~~~r~eAv~lg~~L 80 (105)
T 1fsh_A 55 DVVDWLYTHVEGFKERREARKYASSM 80 (105)
T ss_dssp HHHHHHHHHCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 7899996 44 4 7999999998875
No 18
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=20.08 E-value=1.6e+02 Score=23.13 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=30.5
Q ss_pred ceEEEEee-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027881 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (217)
Q Consensus 104 ~~i~~~G~-~~de~-~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~e 148 (217)
.++.++|- ..|.+ +.....|..+.++.+++|+...|++.|.+.++
T Consensus 56 ~~lfvSGq~~~d~~tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~ 102 (156)
T 1xrg_A 56 SFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNK 102 (156)
T ss_dssp TEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEEeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 45555563 23332 22223588899999999999999888877654
No 19
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=20.05 E-value=56 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHHHHcC--CCHHHHHHHccccccCc
Q 027881 134 NAIDYLSKFG--YSKEQVYLLLSCCPCEG 160 (217)
Q Consensus 134 ~mi~~L~~~g--l~~~eAy~L~S~a~~dl 160 (217)
++++||.+.+ .+++||..|++.- .+-
T Consensus 52 dlVdWLl~~~~~~sR~EAv~lg~~L-l~~ 79 (127)
T 2cso_A 52 CVIDWLVSNQSVRNRQEGLMIASSL-LNE 79 (127)
T ss_dssp HHHHHHHHTTSCSSHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-HHC
Confidence 7899997543 6999999998875 443
Done!