BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027882
         (217 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6B8Z8|SYFB_GRATL Phenylalanine--tRNA ligase beta subunit, chloroplastic
           OS=Gracilaria tenuistipitata var. liui GN=pheT PE=3 SV=1
          Length = 697

 Score = 32.7 bits (73), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 57  TYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDIFTVNRWEMCSAASVSEGSSGY 116
           + F L +++H   D   + LEVL+Y   +LF     P  F++N    C AA+ S    GY
Sbjct: 166 SLFNLQKKSHIIYDSPNIELEVLRYDDVILF-----PIGFSLNENIKCDAATNSIVIMGY 220

Query: 117 ARFMEPDELYCS----RLKIRYGISTRFVDQAGR 146
                 D+ Y +    +LK+   +S R  +Q  R
Sbjct: 221 V----CDKQYITDIKKKLKLSTYLSQRCCNQGSR 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,272,550
Number of Sequences: 539616
Number of extensions: 2865830
Number of successful extensions: 5669
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5668
Number of HSP's gapped (non-prelim): 2
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)