BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027883
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
           Saccharomyces Cerevisiae
 pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
           Saccharomyces Cerevisiae
          Length = 408

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 66/135 (48%), Gaps = 13/135 (9%)

Query: 29  RDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRS 88
           + RL+ H        +  N+AS+   L  +  P   W  + L      +G ++ S L ++
Sbjct: 63  KSRLQSHWSTFYQEQDFANIASQGFNLVRI--PIGYWAFQILDDDPYVSGLQE-SYLDQA 119

Query: 89  MVESKVSKNALRLF----NALGYK--LDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLH 142
           +  ++   N+L+++     A G +   D+  LR   ++ F   + + VT++ +N +LK +
Sbjct: 120 IGWAR--NNSLKVWVDLHGAAGSQNGFDNSGLRD--SYKFLEDSNLAVTINVLNYILKKY 175

Query: 143 ATDEAVPVTPGIQLV 157
           + +E + +  GI+L+
Sbjct: 176 SAEEYLDIVIGIELI 190


>pdb|1IVN|A Chain A, E.Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1
 pdb|1U8U|A Chain A, E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1 IN
           COMPLEXED With Octanoic Acid
          Length = 190

 Score = 26.9 bits (58), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 52  VRLLCDLEQPEPTWTVKHLGG--AMRGAGAEQISVLVRSMVESKVSKNA 98
            RL   L+Q +P W +  LGG   +RG   +Q    +R +++   + NA
Sbjct: 52  ARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANA 100


>pdb|1J00|A Chain A, E. Coli Thioesterase I/protease I/lysophospholipase L1 In
           Complexed With Diethyl Phosphono Moiety
          Length = 190

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 52  VRLLCDLEQPEPTWTVKHLGG--AMRGAGAEQISVLVRSMVESKVSKNA 98
            RL   L+Q +P W +  LGG   +RG   +Q    +R +++   + NA
Sbjct: 52  ARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANA 100


>pdb|1JRL|A Chain A, Crystal Structure Of E. Coli Lysophospholiase L1ACYL-Coa
           Thioesterase IPROTEASE I L109P MUTANT
 pdb|1V2G|A Chain A, The L109p Mutant Of E. Coli Thioesterase IPROTEASE
           ILYSOPHOSPHOLIPASE L1 (TAP) IN COMPLEXED WITH OCTANOIC
           Acid
          Length = 190

 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 52  VRLLCDLEQPEPTWTVKHLGG--AMRGAGAEQISVLVRSMVESKVSKNA 98
            RL   L+Q +P W +  LGG   +RG   +Q    +R +++   + NA
Sbjct: 52  ARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANA 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,772,193
Number of Sequences: 62578
Number of extensions: 201083
Number of successful extensions: 443
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 5
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)