BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027885
(217 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255584277|ref|XP_002532875.1| conserved hypothetical protein [Ricinus communis]
gi|223527360|gb|EEF29504.1| conserved hypothetical protein [Ricinus communis]
Length = 217
Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/217 (90%), Positives = 208/217 (95%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGVHR+RLR+HE+CLK+ PNLG VASEVRLLCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGIVASEVRLLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEPTWTVKH+GGAMRGAGAEQISVLVR+MVESK SKN LRLF ALGYKLDHELLRVGFAF
Sbjct: 61 PEPTWTVKHVGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
HFQRGA+ITV VSSVNKMLKLHATDEAVPVTPGIQLVEVTAPA+ ENY+EV +AVSSFCE
Sbjct: 121 HFQRGARITVRVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPATPENYSEVVAAVSSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPGVSTGVVPTAAAAA SLMSDGGGTTL
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 217
>gi|225458428|ref|XP_002283731.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Vitis vinifera]
gi|302142417|emb|CBI19620.3| unnamed protein product [Vitis vinifera]
Length = 216
Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/216 (89%), Positives = 206/216 (95%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGVHR+RLR+HE+CLK+ PNLG VASEVR+LCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGLVASEVRVLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEPTW V+H+GGAMRG+GAEQISVLVR+MVESKVSKN LRLF ALGY+LDHELLRVGFAF
Sbjct: 61 PEPTWIVRHIGGAMRGSGAEQISVLVRTMVESKVSKNVLRLFYALGYRLDHELLRVGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
HFQRGA ITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENY+EVA+AVSSFCE
Sbjct: 121 HFQRGASITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYSEVAAAVSSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTT 216
YLAPLLHLSKPG STGVVPTAAAAA SLMSD G TT
Sbjct: 181 YLAPLLHLSKPGTSTGVVPTAAAAAASLMSDAGVTT 216
>gi|351722377|ref|NP_001236730.1| uncharacterized protein LOC100500095 [Glycine max]
gi|255629097|gb|ACU14893.1| unknown [Glycine max]
Length = 217
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/217 (87%), Positives = 205/217 (94%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLK+ P+LG VASEVRLLCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGPHLGTVASEVRLLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
EP+WTVKH+GGAMRGAGAEQISVLVRSMVESK SKNALR+F LGYKLDHELLRVGF+F
Sbjct: 61 AEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
+F RGAQITVTVSS+NKMLKLHATDEAVPVTPGIQ+VEVTAPA++E Y EVASAVSSFCE
Sbjct: 121 NFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYAEVASAVSSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG+STGVVPTAAAAA SLMSDGGGT L
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGGTNL 217
>gi|359807608|ref|NP_001241417.1| uncharacterized protein LOC100803031 [Glycine max]
gi|255638120|gb|ACU19374.1| unknown [Glycine max]
Length = 217
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/217 (87%), Positives = 205/217 (94%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLK+ +LG VASEVRLLCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
EP+WTVKH+GGAMRGAGAEQISVLVRSMVESK SKNALR+F LGYKLDHELLRVGF+F
Sbjct: 61 AEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
+F RGAQITVTVSS+NKMLKLHATDEAVPVTPGIQ+VEVTAPA++E YTEVA+AVSSFCE
Sbjct: 121 NFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG+STGVVPTAAAAA SLMSDGG TTL
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL 217
>gi|449496038|ref|XP_004160019.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Cucumis sativus]
Length = 217
Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/217 (86%), Positives = 205/217 (94%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQGICGV R+RLR+HEICLK+ P+LG VASEVR+LCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
EPTWTVKH+GGA+RGAGAEQ+SVLVR+MVESKVSKN LRLF ALGYKLDHELLRVGFAF
Sbjct: 61 AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGA ITVTVSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPA+S+NY+EVA AVS+FCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG+STGVVPTAAAAA SL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217
>gi|388509574|gb|AFK42853.1| unknown [Medicago truncatula]
Length = 217
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/217 (86%), Positives = 202/217 (93%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HE+CLKN P+LG V+SEVRLLCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHELCLKNGPHLGPVSSEVRLLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
EP+WTV+H+GGAMRGAGA+QISVLVR+MVESKVSKN LR+F LGYKLDHELLRVGF+F
Sbjct: 61 TEPSWTVRHVGGAMRGAGADQISVLVRTMVESKVSKNVLRMFYTLGYKLDHELLRVGFSF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGAQITV VSSVNKMLKLHATDEAVPVTPGIQ+VEVTAPAS ENY EVA+AV SFCE
Sbjct: 121 KFNRGAQITVRVSSVNKMLKLHATDEAVPVTPGIQMVEVTAPASDENYAEVAAAVQSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPGVSTGVVPTAAAAA SLMSDGGGT L
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTPL 217
>gi|18399951|ref|NP_565534.1| uncharacterized protein [Arabidopsis thaliana]
gi|75206349|sp|Q9SJZ6.1|MED18_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
18
gi|4544453|gb|AAD22361.1| expressed protein [Arabidopsis thaliana]
gi|117168219|gb|ABK32192.1| At2g22370 [Arabidopsis thaliana]
gi|330252204|gb|AEC07298.1| uncharacterized protein [Arabidopsis thaliana]
Length = 219
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/217 (83%), Positives = 207/217 (95%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CL++ PNLG V+SEVRLLCDL+Q
Sbjct: 3 MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEPTWTVKH+GGAMRGAGA+QISVLVR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct: 63 PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+SENY+EVA+AVSSFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
+LAPL+HLSKP +STGVVPTAAAAA SLMSDGGGTTL
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219
>gi|297825115|ref|XP_002880440.1| hypothetical protein ARALYDRAFT_320077 [Arabidopsis lyrata subsp.
lyrata]
gi|297326279|gb|EFH56699.1| hypothetical protein ARALYDRAFT_320077 [Arabidopsis lyrata subsp.
lyrata]
Length = 219
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/217 (82%), Positives = 205/217 (94%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CLK+ PNLG V+SEVRLLCDL+Q
Sbjct: 3 MECVVQGIIETQHVEALEILLQGLCGVKRERLRVHELCLKSGPNLGVVSSEVRLLCDLDQ 62
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEPTWTVKH+GG MRGAGA+QISV+VR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct: 63 PEPTWTVKHVGGPMRGAGADQISVMVRTMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+ ENY+EVA+AVSSFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATPENYSEVAAAVSSFCE 182
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
+LAPL+HLSKP +STGVVPTAAAAA SLMSDGGGTTL
Sbjct: 183 FLAPLVHLSKPFISTGVVPTAAAAAASLMSDGGGTTL 219
>gi|224093742|ref|XP_002309971.1| predicted protein [Populus trichocarpa]
gi|222852874|gb|EEE90421.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/217 (84%), Positives = 202/217 (93%), Gaps = 1/217 (0%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGVH++ LRVHE+ LK+ PNLG+V SEVRLLC+LE
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVHKEHLRVHELYLKSGPNLGHVTSEVRLLCNLEH 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEP WTVKH+GGA+RGAGAEQISVLVR+MVESK SKN LRLF ALGYKLDHELLRVG AF
Sbjct: 61 PEP-WTVKHVGGALRGAGAEQISVLVRNMVESKASKNVLRLFYALGYKLDHELLRVGSAF 119
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
HF+RGA ITVTVSS+NKMLKLHA D+ +PVT GIQ+VEVTAPA+SENY+EVA+AVSSFCE
Sbjct: 120 HFKRGAWITVTVSSINKMLKLHAIDDTMPVTLGIQVVEVTAPATSENYSEVAAAVSSFCE 179
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPGVSTGVVPTAAAAA SLMSDGGGTTL
Sbjct: 180 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 216
>gi|356567610|ref|XP_003552010.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Glycine max]
Length = 214
Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 186/217 (85%), Positives = 201/217 (92%), Gaps = 3/217 (1%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLK+ P+LG VASEVRLLCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGPHLGTVASEVRLLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
EP+WTV H GGAMRGAGAEQISVLVRSMVESK SKNALR+F LGYKLDHELLRVGF+F
Sbjct: 61 AEPSWTVIHAGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
+F RGAQITVTVSS+NKMLKLHATDEA+PVTPGIQ+VEVTAPA++E Y EVASAVSSFCE
Sbjct: 121 NFHRGAQITVTVSSINKMLKLHATDEAMPVTPGIQMVEVTAPATAETYAEVASAVSSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG+STGVVP AAA SLMSDGGGTTL
Sbjct: 181 YLAPLLHLSKPGISTGVVPAAAA---SLMSDGGGTTL 214
>gi|449470019|ref|XP_004152716.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Cucumis sativus]
Length = 217
Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 183/217 (84%), Positives = 199/217 (91%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQGICGV R+RLR+HEICLK+ P+LG VASEVR+LCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
EPTWTVKH+GGA+RGAGAEQ+SVLVR+MVESKVSKN LRLF ALGYKLDHELLRVGFAF
Sbjct: 61 AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGA ITVTVSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPA+S+NY+EVA AVS+FCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG+STGVVPTAAAAA GTT+
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAPPHPQPLAGTTM 217
>gi|357487623|ref|XP_003614099.1| Mediator of RNA polymerase II transcription subunit [Medicago
truncatula]
gi|355515434|gb|AES97057.1| Mediator of RNA polymerase II transcription subunit [Medicago
truncatula]
Length = 225
Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/206 (84%), Positives = 191/206 (92%)
Query: 12 QHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLG 71
QHVEALEILLQG+CGV R+RLR+HE+CLKN P+LG V+SEVRLLCDLEQ EP+W V+H+G
Sbjct: 20 QHVEALEILLQGLCGVQRERLRIHELCLKNGPHLGPVSSEVRLLCDLEQTEPSWAVRHVG 79
Query: 72 GAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVT 131
GAMRGAGA+QISVLVR+MVESKVSKN LR+F LGYKLDHELLRVGF+F F+RGAQITV
Sbjct: 80 GAMRGAGADQISVLVRTMVESKVSKNVLRMFYTLGYKLDHELLRVGFSFKFKRGAQITVR 139
Query: 132 VSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKP 191
VSSVNKMLKLHATDEAVPVTPGIQ+VEVTAPAS ENY EVA+AV SFCEYLAPLLHLSKP
Sbjct: 140 VSSVNKMLKLHATDEAVPVTPGIQMVEVTAPASDENYAEVAAAVQSFCEYLAPLLHLSKP 199
Query: 192 GVSTGVVPTAAAAAVSLMSDGGGTTL 217
GVSTGVVPTAAAAA SLMSDGGGT L
Sbjct: 200 GVSTGVVPTAAAAAASLMSDGGGTPL 225
>gi|326494100|dbj|BAJ85512.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326516632|dbj|BAJ92471.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 217
Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 165/217 (76%), Positives = 189/217 (87%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALE+LLQG+ GV ++R+RVHE+CLK+ P LG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIETQHVEALEVLLQGLSGVPKERVRVHELCLKSVPMLGAVPSEVRLLCDLAQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P P+WT++H+GGAMRGAGAEQIS+LVR++VESK S N LR F +GYKLDHE+L+VGFAF
Sbjct: 61 PTPSWTIRHVGGAMRGAGAEQISILVRTIVESKASSNVLRYFYGIGYKLDHEILKVGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
FQRGAQ TVTV+S NKM KLHATDEAV VTPGIQLVE+TAPA++ NY +V SAV+SFCE
Sbjct: 121 RFQRGAQFTVTVTSANKMPKLHATDEAVQVTPGIQLVEITAPAAANNYNDVVSAVTSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG STG+VPTA AAA SLMS GG TL
Sbjct: 181 YLAPLLHLSKPGNSTGIVPTAGAAAASLMSSGGAKTL 217
>gi|357138972|ref|XP_003571060.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like, partial [Brachypodium distachyon]
Length = 303
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/217 (76%), Positives = 190/217 (87%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALE+LLQG+ GV ++R+RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 87 MECVVQGIIETQHVEALEVLLQGLSGVPKERVRVHELCLKSGPNLGVVPSEVRLLCDLAQ 146
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P P+WT++H+GGAMRGAGAEQISVLVR++VESK S N LR F +GYKLDHE+L+VGFAF
Sbjct: 147 PTPSWTIRHVGGAMRGAGAEQISVLVRTIVESKASNNVLRYFYGIGYKLDHEVLKVGFAF 206
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
FQRGAQ TVTV+S NKM KLHATDEAV VTPGIQLVE+TAPA++ NY +VAS+V++FCE
Sbjct: 207 RFQRGAQFTVTVTSANKMPKLHATDEAVAVTPGIQLVEITAPAAANNYNDVASSVTAFCE 266
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG STG+V TA AAA SLMS GG TL
Sbjct: 267 YLAPLLHLSKPGNSTGIVLTAGAAAASLMSSGGAKTL 303
>gi|242060840|ref|XP_002451709.1| hypothetical protein SORBIDRAFT_04g006390 [Sorghum bicolor]
gi|241931540|gb|EES04685.1| hypothetical protein SORBIDRAFT_04g006390 [Sorghum bicolor]
Length = 217
Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 168/217 (77%), Positives = 192/217 (88%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALE+LLQG+ GV ++R+RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIETQHVEALEVLLQGLSGVPKERVRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P P+WT++H+GGAMRGAGAEQISVLVR++VESK SKN L F LGYKLDHELL++GFAF
Sbjct: 61 PTPSWTIRHVGGAMRGAGAEQISVLVRTIVESKASKNVLHYFYTLGYKLDHELLKIGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGAQITVTV+S NKM +LHATDEAVPVTPGIQLVE+TAPA+++NY +V SAVS+FCE
Sbjct: 121 RFHRGAQITVTVTSTNKMPRLHATDEAVPVTPGIQLVEITAPAAADNYNDVVSAVSAFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG STG+V TA AAA SLMS GGG TL
Sbjct: 181 YLAPLLHLSKPGHSTGIVATAGAAAASLMSSGGGKTL 217
>gi|219362543|ref|NP_001136991.1| mediator of RNA polymerase II transcription subunit 18 isoform 1
[Zea mays]
gi|194697896|gb|ACF83032.1| unknown [Zea mays]
gi|238014712|gb|ACR38391.1| unknown [Zea mays]
gi|413936236|gb|AFW70787.1| mediator of RNA polymerase II transcription subunit 18 isoform 1
[Zea mays]
gi|413936237|gb|AFW70788.1| mediator of RNA polymerase II transcription subunit 18 isoform 2
[Zea mays]
gi|413936238|gb|AFW70789.1| mediator of RNA polymerase II transcription subunit 18 isoform 3
[Zea mays]
Length = 217
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/217 (76%), Positives = 189/217 (87%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIE QHV+ALE+LLQG+ GV ++R RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIENQHVDALEVLLQGLSGVPKERFRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P P+WT++H+GGAMRGAGAEQISVLVR++VESK SKN L F LGYKLDHELL+ GFAF
Sbjct: 61 PTPSWTIRHVGGAMRGAGAEQISVLVRTVVESKASKNVLHYFYTLGYKLDHELLKSGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGAQITVTV+S NKM +LHATDEA PVTP IQLVE+TAPA+++NY +V SAV++FCE
Sbjct: 121 RFHRGAQITVTVTSANKMSRLHATDEATPVTPAIQLVEITAPAAADNYNDVVSAVTAFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG STG+VPTAAAAA SLMS GGG TL
Sbjct: 181 YLAPLLHLSKPGHSTGIVPTAAAAAASLMSSGGGKTL 217
>gi|115444787|ref|NP_001046173.1| Os02g0193900 [Oryza sativa Japonica Group]
gi|46389838|dbj|BAD15401.1| unknown protein [Oryza sativa Japonica Group]
gi|113535704|dbj|BAF08087.1| Os02g0193900 [Oryza sativa Japonica Group]
gi|215678942|dbj|BAG96372.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697505|dbj|BAG91499.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622359|gb|EEE56491.1| hypothetical protein OsJ_05730 [Oryza sativa Japonica Group]
Length = 220
Score = 339 bits (870), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 159/211 (75%), Positives = 186/211 (88%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHV+ALE+LLQG+ GV ++R+RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIETQHVDALEVLLQGLSGVPKERVRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P+WT++H+GGAMRGAGAEQISVLVRS+VESK S N LR F +GYKLDHE+L+ GFAF
Sbjct: 61 STPSWTIRHVGGAMRGAGAEQISVLVRSIVESKASNNVLRYFYGIGYKLDHEVLKGGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGAQITVTV+SV+KM KLHAT+EAVP+TP IQLVE+TAPA+++NY +V SAV+SFCE
Sbjct: 121 RFHRGAQITVTVTSVSKMTKLHATNEAVPITPAIQLVEITAPAAADNYNDVVSAVTSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSD 211
YLAPLLHLSKPG STG+VPTA AAA SLMS
Sbjct: 181 YLAPLLHLSKPGNSTGIVPTAGAAAASLMSS 211
>gi|195612876|gb|ACG28268.1| mediator of RNA polymerase II transcription subunit 18 [Zea mays]
Length = 217
Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 164/217 (75%), Positives = 188/217 (86%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIE QHV+ALE+LLQG+ GV ++R RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIENQHVDALEVLLQGLSGVPKERFRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P P+WT++H+GGAMRGAGAEQISVLVR++VESK SKN L F LGYKLDHELL+ GFAF
Sbjct: 61 PTPSWTIRHVGGAMRGAGAEQISVLVRTVVESKASKNVLHYFYTLGYKLDHELLKSGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGAQITVTV+S NKM +LHATDEA VTP IQLVE+TAPA+++NY +V SAV++FCE
Sbjct: 121 RFHRGAQITVTVTSANKMSRLHATDEATSVTPAIQLVEITAPAAADNYNDVVSAVTAFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
YLAPLLHLSKPG STG+VPTAAAAA SLMS GGG TL
Sbjct: 181 YLAPLLHLSKPGHSTGIVPTAAAAAASLMSSGGGKTL 217
>gi|218190237|gb|EEC72664.1| hypothetical protein OsI_06213 [Oryza sativa Indica Group]
Length = 220
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/209 (75%), Positives = 185/209 (88%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHV+ALE+LLQG+ GV ++R+RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIETQHVDALEVLLQGLSGVPKERVRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P+WT++H+GGAMRGAGAEQISVLVRS+VESK S N LR F +GYKLDHE+L+ GFAF
Sbjct: 61 STPSWTIRHVGGAMRGAGAEQISVLVRSIVESKASNNVLRYFYGIGYKLDHEVLKGGFAF 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
F RGAQITVTV+SV+KM KLHAT+EAVP+TP IQLVE+TAPA+++NY +V SAV+SFCE
Sbjct: 121 RFHRGAQITVTVTSVSKMTKLHATNEAVPITPAIQLVEITAPAAADNYNDVVSAVTSFCE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLM 209
YLAPLLHLSKPG STG+VPTA AAA SLM
Sbjct: 181 YLAPLLHLSKPGNSTGIVPTAGAAAASLM 209
>gi|147832794|emb|CAN68215.1| hypothetical protein VITISV_011882 [Vitis vinifera]
Length = 248
Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/178 (85%), Positives = 168/178 (94%)
Query: 8 IIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTV 67
++ HVEALEILLQG+CGVHR+RLR+HE+CLK+ PNLG VASEVR+LCDLEQPEPTW V
Sbjct: 39 VLSFGHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGLVASEVRVLCDLEQPEPTWIV 98
Query: 68 KHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQ 127
+H+GGAMRG+GAEQISVLVR+MVESKVSKN LRLF ALGY+LDHELLRVGFAFHFQRGA
Sbjct: 99 RHIGGAMRGSGAEQISVLVRTMVESKVSKNVLRLFYALGYRLDHELLRVGFAFHFQRGAS 158
Query: 128 ITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPL 185
ITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENY+EVA+AVSSFCEYLAP
Sbjct: 159 ITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYSEVAAAVSSFCEYLAPF 216
>gi|116794008|gb|ABK26969.1| unknown [Picea sitchensis]
Length = 224
Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 143/211 (67%), Positives = 180/211 (85%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQP 61
EC+VQGIIETQHVEALE+LLQG+CGV +++L+VHE+ LK+ N+G SEVRLLC LEQP
Sbjct: 9 ECIVQGIIETQHVEALEVLLQGLCGVRKEKLKVHELLLKSGTNIGTSPSEVRLLCSLEQP 68
Query: 62 EPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFH 121
+P+WTV +GGA++GA +EQ+S LVR+ +SKVS NALR F ALGYKLDHELLRVGFAFH
Sbjct: 69 DPSWTVSLIGGALKGAASEQVSALVRNREDSKVSSNALRFFYALGYKLDHELLRVGFAFH 128
Query: 122 FQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEY 181
QR +ITV+V+SV ++ KLHA DEAVPVTPG+QLVEV+AP++S+NY E +A+S+F E+
Sbjct: 129 IQRAVRITVSVTSVQRIPKLHAIDEAVPVTPGLQLVEVSAPSTSDNYHEAVAAISAFSEF 188
Query: 182 LAPLLHLSKPGVSTGVVPTAAAAAVSLMSDG 212
L+PLLHLSKPGV+TGVV TA+ AA SL+S G
Sbjct: 189 LSPLLHLSKPGVTTGVVSTASGAAGSLISRG 219
>gi|168066182|ref|XP_001785021.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663406|gb|EDQ50171.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 222
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/219 (58%), Positives = 172/219 (78%), Gaps = 4/219 (1%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGI+E +HV+ALE+LLQG+CG R+ ++VHEICLK PNLG VASEV L C L Q
Sbjct: 1 MECVVQGILEAKHVDALEVLLQGLCGGLRETIKVHEICLKTGPNLGAVASEVHLCCSLSQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEP W+V+H+GGAMRGAGA+Q+ LVR ++E+ +S N+LR +LGYKLD+E+LR GF+F
Sbjct: 61 PEPVWSVRHVGGAMRGAGADQLPALVRPVLEAGISNNSLRFMYSLGYKLDYEMLRTGFSF 120
Query: 121 HFQR----GAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVS 176
+ IT++V++V+++ K+HA D+ PVTPG+Q+V+V+APAS +NY+EV A+S
Sbjct: 121 QLHKTVPIAVTITISVTAVHRLPKIHAVDDPQPVTPGLQMVQVSAPASPDNYSEVVGAIS 180
Query: 177 SFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGT 215
EYLAPL+HLSKPGV G+VPTA+ AA +L+S GG T
Sbjct: 181 GLAEYLAPLVHLSKPGVPAGIVPTASTAAAALVSRGGIT 219
>gi|302800696|ref|XP_002982105.1| hypothetical protein SELMODRAFT_115735 [Selaginella moellendorffii]
gi|300150121|gb|EFJ16773.1| hypothetical protein SELMODRAFT_115735 [Selaginella moellendorffii]
Length = 219
Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/210 (62%), Positives = 167/210 (79%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIE QHVEAL++LLQG+C R+ ++ HEICLK + G VASE+ LLCDL +
Sbjct: 1 MECVVQGIIEAQHVEALDVLLQGLCEGQREAVKTHEICLKKSLETGTVASELHLLCDLSK 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
WTVKH+GGAMRG GAEQ+ LVR++VESK+S NALR F A+GYK+D+ELLR GFA+
Sbjct: 61 RPQIWTVKHIGGAMRGTGAEQLPALVRNIVESKMSNNALRFFYAVGYKMDYELLRDGFAY 120
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
FQR ITVTV+SV ++ K H+ DEA PVTP IQLVEVTAPA+++N+++V A+SSF E
Sbjct: 121 RFQRAFPITVTVTSVCRLPKQHSIDEATPVTPNIQLVEVTAPATADNFSDVVPAISSFAE 180
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMS 210
+L+PL++LSKPG G+V TA+ AA SL+S
Sbjct: 181 HLSPLVNLSKPGSFAGIVSTASTAAASLLS 210
>gi|302821083|ref|XP_002992206.1| hypothetical protein SELMODRAFT_162215 [Selaginella moellendorffii]
gi|300139973|gb|EFJ06703.1| hypothetical protein SELMODRAFT_162215 [Selaginella moellendorffii]
Length = 232
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 168/223 (75%), Gaps = 13/223 (5%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNP-------------NLGN 47
MECVVQGIIE QHVEAL++LLQG+C R+ ++ HEICLK+ P G
Sbjct: 1 MECVVQGIIEAQHVEALDVLLQGLCEGQREAVKTHEICLKSKPISSFADSRALESLETGT 60
Query: 48 VASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGY 107
VASE+ LLCDL + WTVKH+GGAMRG GAEQ+ LVR++VESK+S NALR F A+GY
Sbjct: 61 VASELHLLCDLSKRPHIWTVKHIGGAMRGTGAEQLPALVRNIVESKMSNNALRFFYAVGY 120
Query: 108 KLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSEN 167
K+D+ELLR GFA+ FQR ITVTV+SV ++ K H+ DEA PVTP IQLVEVTAPA+++N
Sbjct: 121 KMDYELLRDGFAYRFQRAFPITVTVTSVCRLPKQHSIDEATPVTPNIQLVEVTAPATADN 180
Query: 168 YTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMS 210
+++V A+SSF E+L+PL++LSKPG G+V TA+ AA SL+S
Sbjct: 181 FSDVVPAISSFAEHLSPLVNLSKPGSFAGIVSTASTAAASLLS 223
>gi|294462212|gb|ADE76657.1| unknown [Picea sitchensis]
Length = 248
Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/225 (55%), Positives = 161/225 (71%), Gaps = 9/225 (4%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQP 61
EC+V+G+IETQHV+ALE+LLQGI G + +++VHEI LKN NLG E+RL C LE+P
Sbjct: 23 ECIVEGVIETQHVKALEVLLQGISGNQKKKVKVHEIVLKNVRNLGKSVQELRLRCSLEEP 82
Query: 62 EPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFH 121
+P+WTV H+GG MRGA AE+I LVR+ +SKVS AL FN LGYK DHELLRVGF F
Sbjct: 83 QPSWTVTHIGGGMRGATAEKIPALVRNREDSKVSNRALGFFNKLGYKFDHELLRVGFTFK 142
Query: 122 ---------FQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVA 172
+ +IT +V+S++K+ K+ D A P+TPG+ LVEV+ P S+EN+ E A
Sbjct: 143 AIQNVTTEAVETDFEITTSVTSIHKIPKIFEIDTAEPLTPGLHLVEVSTPTSAENFLEAA 202
Query: 173 SAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
+A+S+F E+LAPLLHLSKPG TG+ TA+AAA S+MS G L
Sbjct: 203 TAISTFSEFLAPLLHLSKPGDITGLSSTASAAATSIMSRGSSGKL 247
>gi|238007436|gb|ACR34753.1| unknown [Zea mays]
gi|413936234|gb|AFW70785.1| hypothetical protein ZEAMMB73_295115 [Zea mays]
Length = 144
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/144 (77%), Positives = 125/144 (86%)
Query: 74 MRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVS 133
MRGAGAEQISVLVR++VESK SKN L F LGYKLDHELL+ GFAF F RGAQITVTV+
Sbjct: 1 MRGAGAEQISVLVRTVVESKASKNVLHYFYTLGYKLDHELLKSGFAFRFHRGAQITVTVT 60
Query: 134 SVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGV 193
S NKM +LHATDEA PVTP IQLVE+TAPA+++NY +V SAV++FCEYLAPLLHLSKPG
Sbjct: 61 SANKMSRLHATDEATPVTPAIQLVEITAPAAADNYNDVVSAVTAFCEYLAPLLHLSKPGH 120
Query: 194 STGVVPTAAAAAVSLMSDGGGTTL 217
STG+VPTAAAAA SLMS GGG TL
Sbjct: 121 STGIVPTAAAAAASLMSSGGGKTL 144
>gi|302800720|ref|XP_002982117.1| hypothetical protein SELMODRAFT_58563 [Selaginella moellendorffii]
gi|300150133|gb|EFJ16785.1| hypothetical protein SELMODRAFT_58563 [Selaginella moellendorffii]
Length = 162
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 119/162 (73%), Gaps = 2/162 (1%)
Query: 23 GICGVHRDRLRVHEICLKNNPNL--GNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAE 80
G+C R+ L+ HEICLK +L G VASE+ LLCDL + WT+KH+GGAMRG GAE
Sbjct: 1 GLCEGQREGLKTHEICLKTLESLETGTVASELHLLCDLSKQPQIWTMKHIGGAMRGTGAE 60
Query: 81 QISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLK 140
Q+ LVR++V SK+S NALR F +GYK+D+ELLR GFA+ FQR ITVTV+SV ++ K
Sbjct: 61 QLPALVRNIVVSKMSNNALRFFYTVGYKMDYELLRDGFAYCFQRAFPITVTVTSVCRLPK 120
Query: 141 LHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
H+ +A PVTP IQLVEVTAPA+++N+++V A+S +L
Sbjct: 121 QHSIYDATPVTPNIQLVEVTAPAAADNFSDVVLAISRKLSFL 162
>gi|302821105|ref|XP_002992217.1| hypothetical protein SELMODRAFT_48457 [Selaginella moellendorffii]
gi|300139984|gb|EFJ06714.1| hypothetical protein SELMODRAFT_48457 [Selaginella moellendorffii]
Length = 157
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 120/162 (74%), Gaps = 7/162 (4%)
Query: 23 GICGVHRDRLRVHEICLKNNPNL--GNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAE 80
G+ R+ L+ HEICLK +L G VASE+ LLCDL + T+KH+GGAMRG GAE
Sbjct: 1 GLWEGQREGLKTHEICLKTLESLETGTVASELNLLCDLSK-----TMKHIGGAMRGTGAE 55
Query: 81 QISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLK 140
Q+ LVR++VESK+S NALR F A+GYK+D+ELLR GFA+HFQR ITVTV+SV ++ K
Sbjct: 56 QLPALVRNIVESKMSNNALRFFYAVGYKMDYELLRDGFAYHFQRAFPITVTVTSVCRLPK 115
Query: 141 LHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
H+ DEA PVTP IQLVEVTAP +++N+++V A+S +L
Sbjct: 116 QHSIDEATPVTPNIQLVEVTAPTTADNFSDVVLAISRKLSFL 157
>gi|388499280|gb|AFK37706.1| unknown [Lotus japonicus]
Length = 110
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/102 (83%), Positives = 94/102 (92%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLKN PNLGNVASEVRLLCDLEQ
Sbjct: 1 MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKNGPNLGNVASEVRLLCDLEQ 60
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLF 102
EP+WTVKH+GG +RGAGA+QISVLVR+MVESK SKN L +
Sbjct: 61 AEPSWTVKHIGGPIRGAGADQISVLVRNMVESKASKNVLYVL 102
>gi|413936235|gb|AFW70786.1| hypothetical protein ZEAMMB73_295115 [Zea mays]
Length = 65
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIE QHV+ALE+LLQG+ GV ++R RVHE+CLK+ PNLG V SEVRLLCDL Q
Sbjct: 1 MECVVQGIIENQHVDALEVLLQGLSGVPKERFRVHELCLKSGPNLGVVPSEVRLLCDLAQ 60
Query: 61 PEPTW 65
P P+W
Sbjct: 61 PTPSW 65
>gi|440790106|gb|ELR11394.1| Med18 protein [Acanthamoeba castellanii str. Neff]
Length = 351
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 12/154 (7%)
Query: 43 PNLGNVASEVRLLCDLEQPEPT----WTVKHLG-GAMRGAGAEQISVLVRSMVESKVSKN 97
P+ + RL+ + P P+ W+V + MR E+++ VR++ + +VS N
Sbjct: 128 PSFNELRVRCRLVPSKQGPAPSASGAWSVHYNSVPLMR----EKMAANVRNVTDVEVSDN 183
Query: 98 ALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLV 157
+ +GY+ E +R GF F QR +ITV+V+ V K++ A P+ G V
Sbjct: 184 IIDFLRLMGYQFQFEFIREGFVFQTQR--KITVSVTQVKKIVDKEDLSTAEPLVAGTWFV 241
Query: 158 EVTAPASSENY-TEVASAVSSFCEYLAPLLHLSK 190
E++A N VA ++SF +YL PL+ + +
Sbjct: 242 ELSARTDDSNLIPSVADEINSFADYLMPLVDVKR 275
>gi|384244680|gb|EIE18179.1| hypothetical protein COCSUDRAFT_49382 [Coccomyxa subellipsoidea
C-169]
Length = 204
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 91/210 (43%), Gaps = 27/210 (12%)
Query: 1 MECVVQGIIETQHVEA----LEILLQGICGVHRDRLRVHEICLKNNPNLGNVAS-EVRLL 55
MEC G+++T E+ L+ L I G H + EI L N E+RL+
Sbjct: 1 MECKASGVLDTTKDESALTSLQERLSCISGEHLAPFKQLEILLLGPSYTSNTKGPELRLV 60
Query: 56 CDLEQPE--------PTWTVKHLGGAMRGAGAEQISVLVRSMVESKVS-KNALRLFNALG 106
L++P+ W V+H G +RG GA + VR + ES S + + + ALG
Sbjct: 61 QQLKEPDTAQHKKGSSAWKVRHEGMPLRGKGAADLPATVRVVAESSCSGADIIGFWAALG 120
Query: 107 YKLDHELLRVGFAF------HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT 160
++ + +++ GF HF + V V V K A E V PG LVE T
Sbjct: 121 FQRRYSMVKEGFCVSCYLDDHF-----VHVAVVRVCKEGTGGAAGEQV--APGCWLVEAT 173
Query: 161 APASSENYTEVASAVSSFCEYLAPLLHLSK 190
A+ + A A+ E L PL+ L K
Sbjct: 174 TAATEGQHAAAAGAIGKLAELLEPLVVLQK 203
>gi|308321608|gb|ADO27955.1| mediator of RNA polymerase II transcription subunit 18 [Ictalurus
furcatus]
Length = 208
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 13/193 (6%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLE 59
ME ++QG + Q +++L L+G+C + + HE+ GN +R L
Sbjct: 19 MEYLLQGSVLDQSLDSLLHRLRGLCDNIEPESFADHELVYLLKGQQGN-PFILRARRSLA 77
Query: 60 QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
P W +++LG G + LVR+ V+ S + N +G+++DHE + G
Sbjct: 78 HPTAPWHLRYLGQPEVGDKSRH--ALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGHI 135
Query: 120 FHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAVSS 177
F R + V VS ++++L T+ A P++ LVE V APA + +E + S
Sbjct: 136 F---RKGALKVVVSKLSRVLAPGNTENAEPLSLSY-LVELSVLAPAGQDTVSE---DMRS 188
Query: 178 FCEYLAPLLHLSK 190
F E L PL+HL K
Sbjct: 189 FAEQLKPLVHLEK 201
>gi|318064073|ref|NP_001188029.1| mediator of RNA polymerase II transcription subunit 18 [Ictalurus
punctatus]
gi|308324639|gb|ADO29454.1| mediator of RNA polymerase II transcription subunit 18 [Ictalurus
punctatus]
Length = 208
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLE 59
ME ++QG + Q +++L L+G+C + + HE+ GN +R L
Sbjct: 19 MEYLLQGSVLDQSLDSLLHRLRGLCDNIEPESFADHELVYLLKGRQGN-PFILRARRSLA 77
Query: 60 QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
P W +++LG G + LVR+ V+ S + N +G+++DHE + G
Sbjct: 78 HPTAPWHLRYLGQPEVGDKSRH--ALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGHI 135
Query: 120 FHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAVSS 177
F R + V VS +++ L TD P++ LVE V APA + +E + S
Sbjct: 136 F---RKGALKVVVSKLSRALVPGNTDNTEPLSLSY-LVELSVLAPAGQDTVSE---DMRS 188
Query: 178 FCEYLAPLLHLSK 190
F E L PL+HL K
Sbjct: 189 FAEQLKPLVHLEK 201
>gi|209730950|gb|ACI66344.1| Mediator of RNA polymerase II transcription subunit 18 [Salmo
salar]
Length = 208
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICL-----KNNPNLGNVASEVRL 54
ME ++QG + Q +E+L L+G+C + + HE+ + NP L +R
Sbjct: 19 MEYLLQGSVLDQALESLLHRLRGLCDNMEPETFADHELVYLLKGQQGNPFL------LRA 72
Query: 55 LCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELL 114
L P W +++LG G + VLVR+ V+ S + N +G+++DHE +
Sbjct: 73 RRSLSHPTVPWHLRYLGQPEVGDKSRH--VLVRNCVDVAASHSLPDFLNEMGFRMDHEFV 130
Query: 115 RVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVA 172
G F R + V VS ++++L T+ P++ LVE V APA + +E
Sbjct: 131 AKGHIF---RKGVLKVVVSKLSRILVPGNTENTEPLSLSY-LVELSVLAPAGQDTMSE-- 184
Query: 173 SAVSSFCEYLAPLLHLSK 190
+ SF E L PL+HL K
Sbjct: 185 -DMRSFAEQLKPLVHLEK 201
>gi|41056143|ref|NP_956629.1| mediator of RNA polymerase II transcription subunit 18 [Danio
rerio]
gi|82188273|sp|Q7T3H7.1|MED18_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|31419170|gb|AAH53113.1| Mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast) [Danio rerio]
Length = 208
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGN--VASEVRLLCD 57
ME ++QG + Q +E+L L+G+C + + HE+ GN + R L D
Sbjct: 19 MEYLLQGSVLDQSLESLLHRLRGLCDNMEPESFADHELVYLLKGQQGNPFILRARRSLLD 78
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
P W +++LG G + LVR+ V+ S + N +G+++DHE + G
Sbjct: 79 ---PSVPWHLRYLGQPEVGDKSRH--ALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAV 175
F R + V VS ++++L TD P++ LVE V APA + +E +
Sbjct: 134 QVF---RKGVMKVVVSKLSRVLVPGNTDNTEPLSLSY-LVELSVLAPAGQDTVSE---DM 186
Query: 176 SSFCEYLAPLLHLSK 190
SF E L PL+HL K
Sbjct: 187 RSFAEQLKPLVHLEK 201
>gi|410932497|ref|XP_003979630.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like, partial [Takifugu rubripes]
Length = 204
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLE 59
ME ++QG + Q +E+L L+G+C + + HE+ GN +R L
Sbjct: 19 MEYLLQGSVLDQAMESLLHRLRGLCDNMEPENFTDHELVYVLKGQQGN-PFILRARRSLS 77
Query: 60 QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
P W ++++G G + LVR+ V+ S + N +G+++DHE + G+
Sbjct: 78 HPTSPWHLRYVGQPEVGDKSRH--TLVRNCVDVAASHSLPDFLNEMGFRMDHEFVAGGYI 135
Query: 120 FHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAVSS 177
F R + V VS V+++L T+ V+ LVE V APA + V+ + S
Sbjct: 136 F---RKGAMKVLVSRVSRILVPGNTENTERVSSSY-LVELSVLAPAGQDT---VSEDMRS 188
Query: 178 FCEYLAPLLHLSK 190
F E L PL+HL K
Sbjct: 189 FAEQLKPLVHLEK 201
>gi|432910337|ref|XP_004078317.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Oryzias latipes]
Length = 209
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 13/193 (6%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLE 59
ME ++QG + Q +E+L L+G+C + + HE+ GN +R L
Sbjct: 19 MEYLLQGSVLDQALESLLHRLRGLCDNMEPETFTDHELVYLLKGQQGNPFI-LRARRSLS 77
Query: 60 QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
P W +++LG G + LVR+ V+ S++ N +G+++DHE + G
Sbjct: 78 HPTSPWHLRYLGQPEVGDKSRH--ALVRNCVDVAASQSLPEFLNEMGFRMDHEFVASGHI 135
Query: 120 FHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSS 177
F R + V VS V+++L T+ E + ++ ++L + APA + +E + S
Sbjct: 136 F---RKGAMKVVVSKVSRILVPGNTENTERMSLSYLVEL-SILAPAGQDTVSE---DMRS 188
Query: 178 FCEYLAPLLHLSK 190
F E L PL+HL K
Sbjct: 189 FAEQLKPLIHLEK 201
>gi|209738128|gb|ACI69933.1| Mediator of RNA polymerase II transcription subunit 18 [Salmo
salar]
Length = 208
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 23/198 (11%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICL-----KNNPNLGNVASEVRL 54
ME ++QG + Q +E+L L+G+C + + HE+ + NP L +R
Sbjct: 19 MEYLLQGSVLDQALESLLHRLRGLCDNMEPETFADHELVYLLKGQQGNPFL------LRA 72
Query: 55 LCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELL 114
L P W +++LG G + LVR+ V+ S + N +G+++DHE +
Sbjct: 73 RRSLSHPTVPWHLRYLGQP--EVGDKSRHALVRNCVDVAASHSLPDFLNEMGFRMDHEFV 130
Query: 115 RVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVA 172
G F+RG + V VS ++++L T+ P++ LVE V APA + +E
Sbjct: 131 AKGHI--FRRGV-LKVVVSKLSRILVPGNTENTEPLSLSY-LVELSVLAPAGQDTMSE-- 184
Query: 173 SAVSSFCEYLAPLLHLSK 190
+ SF E L PL+HL K
Sbjct: 185 -EMRSFAEQLKPLVHLEK 201
>gi|348526081|ref|XP_003450549.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Oreochromis niloticus]
Length = 209
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 13/193 (6%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLE 59
ME ++QG + Q +E+L L+G+C + + HE+ GN +R L
Sbjct: 19 MEYLLQGSVLDQALESLLHRLRGLCDNMEPETFTDHELVYLLKGQQGNPFI-LRARRSLS 77
Query: 60 QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
P W +++LG + G + LVR+ V+ S + N +G+++DHE + G
Sbjct: 78 HPTAPWHLRYLGQSEVGDKSRH--ALVRNCVDVAASHSLPEFLNEMGFRMDHEFVSNGHI 135
Query: 120 FHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSS 177
F R + + VS ++++L T+ E + ++ ++L V APA + V+ + S
Sbjct: 136 F---RKGAMKIVVSKLSRILVPGNTENTEHLSLSYLVEL-SVLAPAGQDT---VSEDMRS 188
Query: 178 FCEYLAPLLHLSK 190
F E L PL+HL K
Sbjct: 189 FAEQLKPLVHLEK 201
>gi|321459604|gb|EFX70656.1| hypothetical protein DAPPUDRAFT_217150 [Daphnia pulex]
Length = 227
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHR---DRLRVHEICLK-NNPNLGNVASE-----V 52
E ++QG + E L L+G+C + HE+C N G + +
Sbjct: 26 EYLLQGSVIDSSAEVLHNRLRGLCDAAETGPETFHDHEMCFSLKASNPGGTPQQQQPFLL 85
Query: 53 RLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHE 112
R+ L+ PE W +++LG G Q +VL RS ++ + N + + LG +++ E
Sbjct: 86 RVRRALDHPEYPWQLRYLGQPELG-DKNQPTVL-RSCIDIACTPNVVEFLSELGCRIEFE 143
Query: 113 LLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTE 170
+ G+ F R ++ VT+S + +M + + D VT G LVE++ AP+ +
Sbjct: 144 YVLKGYLF---RKGRMKVTMSKIFRMGQAKSPDSLESVT-GSYLVELSLLAPSGQD---A 196
Query: 171 VASAVSSFCEYLAPLLHLSK 190
VA + F E L PL+HL K
Sbjct: 197 VADEIKVFAEQLRPLVHLEK 216
>gi|260808789|ref|XP_002599189.1| hypothetical protein BRAFLDRAFT_199934 [Branchiostoma floridae]
gi|229284466|gb|EEN55201.1| hypothetical protein BRAFLDRAFT_199934 [Branchiostoma floridae]
Length = 204
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 58 LEQPEP-TWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L+QP+ W ++++G A G G + S LVR+ ++ S N +G++LDHE +
Sbjct: 67 LDQPDSLPWQLRYVGTAEAGIGDKSRSTLVRTCIDVATSDNVTTFLTDMGFRLDHECVVK 126
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVS 176
G+ F +G I VTVS + ++ T+ P++ LVE++ S EVA +
Sbjct: 127 GYL--FTKGC-IKVTVSKIFRVTVPGNTENLEPLSLS-HLVELSV-VSPSGQDEVADTMK 181
Query: 177 SFCEYLAPLLHLSK 190
F E L P++ L K
Sbjct: 182 LFAEQLKPIVQLEK 195
>gi|62858681|ref|NP_001017086.1| mediator of RNA polymerase II transcription subunit 18 [Xenopus
(Silurana) tropicalis]
gi|123893054|sp|Q28GE1.1|MED18_XENTR RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|89266920|emb|CAJ82247.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast) [Xenopus (Silurana) tropicalis]
gi|166796936|gb|AAI58935.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast) [Xenopus (Silurana) tropicalis]
Length = 208
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHE--ICLKNNPNLGNVASE--VRLL 55
ME ++QG I Q +E+L L+G+C + + HE LK G AS +R
Sbjct: 19 MEYLLQGSILDQGLESLLHRLRGLCDNMEPETFADHESVYLLK-----GQQASPFVLRAR 73
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
L++P W +++LG AG LVR+ V+ S +G+++DHE +
Sbjct: 74 RPLDRPGAPWHLRYLGQP--EAGDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVA 131
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTEVAS 173
G H R + V V V ++L A + A P++ LVE++ APA +N +A
Sbjct: 132 RG---HLFRKGVMKVAVYKVFRVLVAGAAEGAEPLSLSY-LVELSAVAPAGQDN---IAD 184
Query: 174 AVSSFCEYLAPLLHLSK 190
V F E L PL+ L K
Sbjct: 185 EVRGFAEQLRPLVQLEK 201
>gi|296434241|ref|NP_001171790.1| mediator of RNA polymerase II transcription subunit 18
[Saccoglossus kowalevskii]
Length = 207
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 19/195 (9%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHR--DRLRVHEIC--LKNNPNLGNVASEVRLLCD 57
E ++QG I +E+L L+G+C + HE+ L+ P+ + +R
Sbjct: 20 EYLLQGSILDSALESLLHRLRGLCDNVEGPETFHDHEMVYILRGTPS----PAILRARHA 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
L+ P W ++++G + G + S LVRS ++ S N +G++LDHE + G
Sbjct: 76 LDHPNIPWQLRYVGQS--EVGDKNRSTLVRSCIDCATSDNLSSFLVEMGFRLDHEYVIKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
+ F R ++ +TVS + +++ T+ EAV ++ ++L V APA + V +
Sbjct: 134 YLF---RKGRMKITVSKLFRVISPGVTEEIEAVSLSHLVEL-SVVAPAGQD---AVGDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
SF E+L P++ + K
Sbjct: 187 RSFAEHLKPIVQMEK 201
>gi|148226402|ref|NP_001086933.1| mediator of RNA polymerase II transcription subunit 18 [Xenopus
laevis]
gi|82182365|sp|Q6DD39.1|MED18_XENLA RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|50418245|gb|AAH77790.1| MGC80383 protein [Xenopus laevis]
Length = 208
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHE--ICLKNNPNLGNVASE--VRLL 55
ME ++QG I Q +E+L L+G+C + + HE LK G AS +R
Sbjct: 19 MEYLLQGSILDQGLESLLHRLRGLCDNMEPETFADHESVYLLK-----GQQASPFVLRAR 73
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
L++P W +++LG AG LVR+ V+ S +G+++DHE +
Sbjct: 74 RPLDRPGAPWHLRYLGQP--EAGDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVA 131
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTEVAS 173
G H R + V V V ++L A + A P++ LVE++ APA +N +A
Sbjct: 132 RG---HLFRKGVMKVAVYKVFRVLVSGAAEGAEPLSLSY-LVELSAVAPAGQDN---IAD 184
Query: 174 AVSSFCEYLAPLLHLSK 190
V F E L PL+ L K
Sbjct: 185 EVRGFAEQLRPLVQLEK 201
>gi|322801940|gb|EFZ22487.1| hypothetical protein SINV_00845 [Solenopsis invicta]
Length = 229
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 18/211 (8%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDR----LRVHEICL---KNNPNLGNVASEVRL 54
E ++QG + VE L L+G+C + D HE+ KN PN + VR
Sbjct: 27 EYLLQGSVLDTSVEVLLHRLRGLCD-NVDHGPEGFNDHEMSFSLRKNAPNEQPLLLRVRR 85
Query: 55 LCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELL 114
D + W ++++G + G + +VRS ++ S + LG KLD E +
Sbjct: 86 TLDSGYADLPWQLRYIG--QQELGDKSRPTIVRSSIDVATSNTVVEFLTELGCKLDFEYI 143
Query: 115 RVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVA 172
G+ F R ++ +TVS + K+ + + + LVE V AP+ + VA
Sbjct: 144 TRGYMF---RKGRMKITVSKIFKVNQTKVPENIPDMISQSYLVELSVVAPSGQD---AVA 197
Query: 173 SAVSSFCEYLAPLLHLSKPGVSTGVVPTAAA 203
+ F E L PL+ L K VVP++ +
Sbjct: 198 EDMRIFAEQLRPLVQLEKVDYKRFVVPSSQS 228
>gi|91092028|ref|XP_969359.1| PREDICTED: similar to mediator complex [Tribolium castaneum]
gi|270004688|gb|EFA01136.1| hypothetical protein TcasGA2_TC010359 [Tribolium castaneum]
Length = 222
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGIC---GVHRDRLRVHEICLK---NNPNLGNVASEVRLL 55
E ++QG + Q+VE L L+G+C + HE+C NP V +R+
Sbjct: 24 EYLLQGSVLDQYVEVLLHRLRGLCDNVDSGPESFHDHELCFTLRATNPGAPMVLP-LRVR 82
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
L+ P+ W ++++G + G + +VRS ++ S + LG ++D E +
Sbjct: 83 RALDVPDAAWQLRYVG--QQELGDKNRPTVVRSSIDMACSSTIVEFLTELGCRVDFEYIA 140
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATD-EAVPVTPGIQLVEVTAPASSENYTEVASA 174
G+ F R ++ +TVS + KM + + E V LVE++ A S +A
Sbjct: 141 RGYMF---RKGRMKITVSKIFKMGSMTSKPGEGVEAISQSYLVELSVLAPS-GQDAIAED 196
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 197 MRIFAEQLRPLVQLEK 212
>gi|149593928|ref|XP_001509575.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Ornithorhynchus anatinus]
Length = 208
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEIC--LKNNPNLGNVASEVRLLCD 57
ME ++QG + +E+L L+G+C V + HE+ LK V R L
Sbjct: 19 MEYLLQGSVLDHSLESLLHRLRGLCDNVEPEAFLDHEMVFLLKGQQASPFVLRARRSLAP 78
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
P W +++LG G Q LVR+ V+ S+N +G++LDHE + G
Sbjct: 79 AGMP---WHLRYLGQPEMGDKNRQ--ALVRNSVDIATSENLTDFLMEMGFRLDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + V V V ++L TD EA+ ++ ++L V APA + +E +
Sbjct: 134 ---HLFRKGAMKVCVYKVFRVLLPGNTDSIEALSLSYLVEL-SVVAPAGQDGVSE---DM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|242009649|ref|XP_002425595.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212509488|gb|EEB12857.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 227
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLKNNPNLGNVASEVRLLCDL 58
E ++QG + VE L L+G+C + HE+C + +R+ L
Sbjct: 27 EYLLQGSVLDSAVEVLLHRLRGLCDNVDSGPETFYDHEMCFSIRSSTMPAPLSLRVRRAL 86
Query: 59 EQPEPTWTVKHLGGAMRGA-GAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+ + W ++++G G G + +VRS ++ S + LG ++D E + G
Sbjct: 87 DCTDMPWQLRYIGQPELGPQGDKTRPTIVRSSIDVGTSSTVVEFLTELGCRMDFEYIVKG 146
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSS 177
+ F R ++ +TVS + KM ++ + P++ LVE++ A S +A + S
Sbjct: 147 YMF---RKGRMKITVSKIFKMGQVKPPENVEPISQSY-LVELSVLAPS-GQDAIAEDMRS 201
Query: 178 FCEYLAPLLHLSK 190
F E L PL+ L K
Sbjct: 202 FAEQLKPLVQLEK 214
>gi|405971868|gb|EKC36674.1| Mediator of RNA polymerase II transcription subunit 18 [Crassostrea
gigas]
Length = 582
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEIC--LKNNPNLGNVASEVRLLC 56
E +QG + +E L L+G+C ++ + HE+ +KN + VR
Sbjct: 399 EFFLQGSVMENSLETLVNRLKGLCDNADYQQESFQDHEMVFHIKNTSVPTPLVFRVRH-- 456
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L Q E W++++LG A G + LVRS ++ S+N + LG+++DHE +
Sbjct: 457 SLVQTE-CWSLRYLGHAE--VGDKNRPTLVRSYIDCPTSENVAQFIGELGFRMDHEFVVK 513
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKL-HATDEAVPVTPGIQLVEVTAPASSENYTEVASAV 175
GF FH R + +TVS KM + + T++ + LVE++ +S V +
Sbjct: 514 GFYFHKGR---MKITVSKFYKMNQPGNTTNDTIETVCPSYLVELSV-VTSSGQEAVGDDM 569
Query: 176 SSFCEYLAPLLHL 188
+F E L P L
Sbjct: 570 KNFAEQLKPYPFL 582
>gi|332374508|gb|AEE62395.1| unknown [Dendroctonus ponderosae]
Length = 221
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLKNNPNLGN--VASEVRLLC 56
E ++QG + Q+VE L L+G+C + HE+C N N + +R+
Sbjct: 24 EYLLQGSVLDQYVEVLLHRLRGLCDNVDSGPETFNDHELCYSLRSNTANSPMVLPLRVRR 83
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L+ + + ++++G + G + +VRS ++ S + LG +LD E +
Sbjct: 84 ALDVTDAPFQLRYVG--QQEMGDKNRPTVVRSCIDMACSSTIIEFLTELGCRLDFEYIAR 141
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ VTVS + KM + + E V LVE V AP + +A
Sbjct: 142 GYMF---RKGRMKVTVSKIFKMNGMASKPEGVEAISQSYLVELSVQAPLGQD---AIAED 195
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 196 MRVFAEQLKPLVQLEK 211
>gi|393909048|gb|EFO22495.2| mediator protein 18 [Loa loa]
Length = 227
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK----NNPNLGNVASEVRLLCD 57
EC++ G + +H E L L+G+C + HE+ +P++ VRL
Sbjct: 32 ECILYGSVLKEHEEKLLQRLRGLCDPGQHSFNEHEMVFSLKTGQDPDVT-----VRLRRK 86
Query: 58 LEQPEPT---WTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHEL 113
P+ W +++G A ++R ++S + S N + LG ++D+E
Sbjct: 87 FGGPDANSFQWHFRYMGAAEPDV---HCPTIIRKSIDSLIYSSNMMEFVKTLGLRMDYEY 143
Query: 114 LRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAV--PVTPGIQLVEVTAPASSENYTEV 171
L G+ F I + ++++ + K+ D V P++ + + TA ++ Y
Sbjct: 144 LTKGYLF---TKGHIKIIINNITRTEKIGTYDPNVLKPLSDSLLIEMSTALPDTKEYMTT 200
Query: 172 ASAVSSFCEYLAPLLHLSK 190
A A+ SF + L+P+ + K
Sbjct: 201 AKALRSFADQLSPICDMQK 219
>gi|345488095|ref|XP_003425834.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 1 [Nasonia vitripennis]
gi|345488097|ref|XP_003425835.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 2 [Nasonia vitripennis]
Length = 217
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICL---KNNPNLGNVASEVRLL 55
E +QG + VE L L+G+C ++ HE+C + P + VR
Sbjct: 25 EYFLQGSVLDSAVEVLLHRLRGLCDNVDTGPEQFHDHEMCFSIRRGPPPDLPLLLRVRRA 84
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D + + W ++++G G ++ +VRS ++ S + N LG +LD E +
Sbjct: 85 LDYQ--DMPWQLRYIGQPELGDKSQ--PTVVRSSLDIATSSTVVEFLNELGCRLDFEYII 140
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAV 175
G+ F R ++ VTVS + KM + D ++ LVE++ A S T +A +
Sbjct: 141 RGYMF---RKGRMKVTVSKIFKMNQAKIPDSMEAISQSY-LVELSVLAPS-GQTAIAEDI 195
Query: 176 SSFCEYLAPLLHLSK 190
F E L PL+ L K
Sbjct: 196 RIFAEQLKPLVQLEK 210
>gi|312078056|ref|XP_003141572.1| mediator protein 18 [Loa loa]
Length = 213
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK----NNPNLGNVASEVRLLCD 57
EC++ G + +H E L L+G+C + HE+ +P++ VRL
Sbjct: 32 ECILYGSVLKEHEEKLLQRLRGLCDPGQHSFNEHEMVFSLKTGQDPDVT-----VRLRRK 86
Query: 58 LEQPEPT---WTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHEL 113
P+ W +++G A ++R ++S + S N + LG ++D+E
Sbjct: 87 FGGPDANSFQWHFRYMGAAEPDV---HCPTIIRKSIDSLIYSSNMMEFVKTLGLRMDYEY 143
Query: 114 LRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAV--PVTPGIQLVEVTAPASSENYTEV 171
L G+ F I + ++++ + K+ D V P++ + + TA ++ Y
Sbjct: 144 LTKGYLF---TKGHIKIIINNITRTEKIGTYDPNVLKPLSDSLLIEMSTALPDTKEYMTT 200
Query: 172 ASAVSSFCEYLAP 184
A A+ SF + L+P
Sbjct: 201 AKALRSFADQLSP 213
>gi|443683669|gb|ELT87838.1| hypothetical protein CAPTEDRAFT_129251 [Capitella teleta]
Length = 202
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEI--CLKNNPNLGNVASEVRLLC 56
E ++QG I +H + L L G+C ++ HE+ L++ V + +
Sbjct: 10 EYLLQGSILEEHGDVLLNRLNGLCDPVETGPEKFYDHELVYTLRDPVPPPVVFRVRQAV- 68
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
E PE W ++ LG + LVRS ++ S N +G++LDHE
Sbjct: 69 --EHPEAPWHLRFLGQP--DVADKSRHTLVRSCIDVGCSSNVADFLFEMGFRLDHEYTVK 124
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ VTVS + ++++ + A P+T LVE V AP + ++
Sbjct: 125 GYLF---RKGRMKVTVSKIFRVVQSGNPEHAEPLTKSY-LVELSVVAPQGQD---QIQDD 177
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E+L PL+ L K
Sbjct: 178 MKGFAEHLKPLVMLEK 193
>gi|307212781|gb|EFN88452.1| Mediator of RNA polymerase II transcription subunit 18
[Harpegnathos saltator]
Length = 221
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICL---KNNPNLGNVASEVRLL 55
E ++QG + VE L L G+C + ++ HE+C + P + VR
Sbjct: 25 EYLLQGSVLDSCVEVLLHRLGGLCDNVDIGHEQFDDHEMCFSIRRGTPQEQPLLLRVRRA 84
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D + W ++++G G + +VRS ++ S + LG KLD E +
Sbjct: 85 LDQSHADMPWQLRYIGQPELGDKSR--PTIVRSSIDIATSNTVVEFLTELGCKLDFEYIA 142
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAV 175
G+ F R ++ VTV+ + KM + + LVE++ A S + +A +
Sbjct: 143 RGYMF---RKGRMKVTVTKIFKMNQGKMEGGGMEPISQSYLVELSVLAPS-GHDAIAEDM 198
Query: 176 SSFCEYLAPLLHLSK 190
F E L PL+ L K
Sbjct: 199 RIFAEQLRPLVQLEK 213
>gi|363744250|ref|XP_003643008.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Gallus gallus]
Length = 208
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + Q +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDQSLESLLHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S N +G+++DHE + G
Sbjct: 76 MDKSGMPWHLRYLGQP--EIGDKNRHALVRNCVDIATSDNLTDFLVEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAV 175
F R + + V + ++L TD P++ LVE V APA + V+ +
Sbjct: 134 HVF---RKGIMKIVVYKIFRILMPGNTDSIEPLSLSY-LVELNVVAPAGQDI---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|427798589|gb|JAA64746.1| Putative mediator of rna polymerase ii transcription subunit,
partial [Rhipicephalus pulchellus]
Length = 204
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 13/193 (6%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHR---DRLRVHEICLKNNPNLGNVASEVRLLCDL 58
E ++QG I E L L+G+C + +E+ + G S VR L
Sbjct: 17 EYLLQGSIMDGACEVLLHRLRGLCDNSDSPIESFHDYEMVFQIRGPTGTPLS-VRARQSL 75
Query: 59 EQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGF 118
+ P+ W +++LG G + +VRS ++ S N + N +G++LD E + G
Sbjct: 76 DSPQMPWHLRYLGQPEVGDKSRH--TVVRSCIDVSTSNNVVSFLNEMGFRLDFEFVLKGH 133
Query: 119 AFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPG-IQLVEVTAPASSENYTEVASAVSS 177
FQ+G ++ V V+ V ++++ + PV+ I + V APA E+ + + +
Sbjct: 134 M--FQKG-RMKVIVAKVFRLVQQGNPESIEPVSNSHIIELSVIAPAGQES---LGDEMKA 187
Query: 178 FCEYLAPLLHLSK 190
F E L PL+ L K
Sbjct: 188 FAEQLKPLVELEK 200
>gi|344287486|ref|XP_003415484.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Loxodonta africana]
Length = 208
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVRS V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRSCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSIEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|351695930|gb|EHA98848.1| Mediator of RNA polymerase II transcription subunit 18
[Heterocephalus glaber]
Length = 208
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLLHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRTRRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
L++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 LDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSIEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|156385142|ref|XP_001633490.1| predicted protein [Nematostella vectensis]
gi|156220561|gb|EDO41427.1| predicted protein [Nematostella vectensis]
Length = 162
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1 MECVVQGIIETQHVEALEILLQGICG--VHR-DRLRVHEI--CLKNNPNLGNVASEVRLL 55
ME ++QG + ++VE L L+G+C H + HE+ L+N+ N R
Sbjct: 13 MEYLLQGSVAKENVETLLHRLRGLCDNTAHDATKFADHEMVYTLRNSTN----TVTFRAR 68
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
L P W +++LG A G + + L+RS VE S+N LG++ D+E++
Sbjct: 69 HSLADPSAPWQLRYLGQAEMGDKSR--ATLLRSCVEVSTSENLTAFLEELGFRFDYEVVL 126
Query: 116 VGFAFHFQRGAQITVTVSSVNKM-LKLHATDEAV 148
GF F+ + +TVS V ++ + H A+
Sbjct: 127 KGFVFY---KGHMRITVSQVFRVRVTFHGKTHAI 157
>gi|395521928|ref|XP_003765066.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Sarcophilus harrisii]
Length = 208
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDKTGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILMPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|21313064|ref|NP_080315.1| mediator of RNA polymerase II transcription subunit 18 [Mus
musculus]
gi|81904509|sp|Q9CZ82.1|MED18_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|12849926|dbj|BAB28536.1| unnamed protein product [Mus musculus]
gi|46250291|gb|AAH68306.1| Mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast) [Mus musculus]
gi|74198252|dbj|BAE35296.1| unnamed protein product [Mus musculus]
gi|148698156|gb|EDL30103.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast) [Mus musculus]
Length = 208
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + V V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKVVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|402586547|gb|EJW80485.1| hypothetical protein WUBG_08607 [Wuchereria bancrofti]
Length = 213
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK----NNPNLGNVASEVRLLCD 57
EC++ G + +H E L L+G+C + HE+ +P++ VRL
Sbjct: 32 ECILYGSVLKEHEEKLLQRLRGLCDPGQHSFNEHEMVFSLKTGQDPDVT-----VRLRRK 86
Query: 58 LEQPEPT---WTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHEL 113
P+ W +++G A I +R ++S + S N + LG ++D+E
Sbjct: 87 FGGPDANSFQWHFRYMGAAEPDVHCPTI---IRKSIDSLIYSSNMMEFVKTLGLRMDYEY 143
Query: 114 LRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAV--PVTPGIQLVEVTA--PASSENYT 169
L G+ F I + ++++ + K+ D V P++ + L+E++A P + E Y
Sbjct: 144 LTKGYLF---TKGHIKIIINNITRTEKIGTYDPNVLKPLSDSL-LIEMSAALPDTKE-YM 198
Query: 170 EVASAVSSFCEYLAP 184
A A+ SF + L+P
Sbjct: 199 TTAKALRSFADQLSP 213
>gi|241172449|ref|XP_002410755.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
gi|215494971|gb|EEC04612.1| mediator of RNA polymerase II transcription subunit, putative
[Ixodes scapularis]
Length = 218
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 52 VRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDH 111
VR L+ P+ W ++++G G + +VRS ++ S N + N LG++LD
Sbjct: 78 VRARQSLDSPQMPWHLRYVGQPEVGDRSRH--TVVRSCIDVSTSNNLVSFLNELGFRLDF 135
Query: 112 ELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPG-IQLVEVTAPASSENYTE 170
E + G FQ+G ++ V V+ V ++L+ D PV+ I + V AP E+
Sbjct: 136 EFVLKGHM--FQKG-RMKVIVAKVFRLLQQGNPDSCEPVSQSHIIELSVIAPGGQES--- 189
Query: 171 VASAVSSFCEYLAPLLHLSK 190
+ + +F + L PL+ L K
Sbjct: 190 LGDEMKAFADQLKPLVELEK 209
>gi|115495983|ref|NP_001069703.1| mediator of RNA polymerase II transcription subunit 18 [Bos taurus]
gi|426221848|ref|XP_004005118.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Ovis aries]
gi|122133501|sp|Q0VCD4.1|MED18_BOVIN RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|111307124|gb|AAI20224.1| Mediator complex subunit 18 [Bos taurus]
gi|296490023|tpg|DAA32136.1| TPA: mediator of RNA polymerase II transcription subunit 18 [Bos
taurus]
gi|440905997|gb|ELR56313.1| Mediator of RNA polymerase II transcription subunit 18 [Bos
grunniens mutus]
Length = 208
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFVDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
L++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 LDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIVVYKIFRILVPGNTDNTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|291399463|ref|XP_002716126.1| PREDICTED: mediator complex subunit 18 [Oryctolagus cuniculus]
Length = 208
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGTPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIYRILVPGNTDSIEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|126328775|ref|XP_001364993.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Monodelphis domestica]
Length = 208
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDKTGAPWHLRYLGQP--EMGDKNRHTLVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIVVYKIFRILIPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|188035867|ref|NP_001120822.1| mediator of RNA polymerase II transcription subunit 18 [Homo
sapiens]
gi|188219520|ref|NP_060108.2| mediator of RNA polymerase II transcription subunit 18 [Homo
sapiens]
gi|114555087|ref|XP_001152339.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Pan troglodytes]
gi|297665780|ref|XP_002811218.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Pongo abelii]
gi|297665782|ref|XP_002811219.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 3 [Pongo abelii]
gi|397515816|ref|XP_003828139.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Pan paniscus]
gi|397515818|ref|XP_003828140.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Pan paniscus]
gi|410032566|ref|XP_003949386.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Pan troglodytes]
gi|410032568|ref|XP_003949387.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Pan troglodytes]
gi|426328611|ref|XP_004025345.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Gorilla gorilla gorilla]
gi|426328613|ref|XP_004025346.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Gorilla gorilla gorilla]
gi|426328615|ref|XP_004025347.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 3 [Gorilla gorilla gorilla]
gi|74752353|sp|Q9BUE0.1|MED18_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18; AltName:
Full=p28b
gi|12803717|gb|AAH02694.1| MED18 protein [Homo sapiens]
gi|40714343|dbj|BAD06869.1| p28b [Homo sapiens]
gi|119628104|gb|EAX07699.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast), isoform CRA_a [Homo sapiens]
gi|119628105|gb|EAX07700.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast), isoform CRA_a [Homo sapiens]
gi|119628107|gb|EAX07702.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast), isoform CRA_a [Homo sapiens]
gi|208968575|dbj|BAG74126.1| mediator complex subunit 18 [synthetic construct]
gi|410206736|gb|JAA00587.1| mediator complex subunit 18 [Pan troglodytes]
gi|410251062|gb|JAA13498.1| mediator complex subunit 18 [Pan troglodytes]
gi|410291870|gb|JAA24535.1| mediator complex subunit 18 [Pan troglodytes]
gi|410291872|gb|JAA24536.1| mediator complex subunit 18 [Pan troglodytes]
gi|410330157|gb|JAA34025.1| mediator complex subunit 18 [Pan troglodytes]
Length = 208
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 KNFAEQLKPLVHLEK 201
>gi|383852250|ref|XP_003701641.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Megachile rotundata]
Length = 216
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLKNNPNLGNVASEVRLLCDL 58
E ++QG + VE L L+G+C + HE+C + + VR D
Sbjct: 25 EYLLQGSVLDSAVEVLLHRLRGLCDNVDTGPETFNDHEMCFSIRASEQPLLLRVRRALDY 84
Query: 59 EQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGF 118
+ + W ++++G G + +VRS ++ S + LG +LD E + G+
Sbjct: 85 Q--DMPWQLRYIGQPELGDKSR--PTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGY 140
Query: 119 AFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSF 178
F R ++ VTVS + KM + E++ LVE++ A S +A + F
Sbjct: 141 MF---RKGRMKVTVSKIFKMGQQGKMPESMEAISQSYLVELSVLAPS-GQDAIAEDMRIF 196
Query: 179 CEYLAPLLHLSK 190
E L PL+ L K
Sbjct: 197 AEQLKPLVQLEK 208
>gi|348571062|ref|XP_003471315.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Cavia porcellus]
Length = 208
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGTPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVTKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|332245203|ref|XP_003271752.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Nomascus leucogenys]
gi|332245205|ref|XP_003271753.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Nomascus leucogenys]
gi|332245207|ref|XP_003271754.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 3 [Nomascus leucogenys]
Length = 208
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAAWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRVLVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 KNFAEQLKPLVHLEK 201
>gi|170595618|ref|XP_001902453.1| Mediator protein 18 [Brugia malayi]
gi|170595620|ref|XP_001902454.1| Mediator protein 18 [Brugia malayi]
gi|158589867|gb|EDP28698.1| Mediator protein 18, putative [Brugia malayi]
gi|158589868|gb|EDP28699.1| Mediator protein 18, putative [Brugia malayi]
Length = 213
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK----NNPNLGNVASEVRLLCD 57
EC++ G + +H E L L+G+C + HE+ +P++ VRL
Sbjct: 32 ECILYGSVLKEHEEKLLQRLRGLCDPGQHSFNEHEMVFSLKTGQDPDVT-----VRLRRK 86
Query: 58 LEQPEPT---WTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHEL 113
P+ W +++G A I +R ++S + S N + LG ++D+E
Sbjct: 87 FGGPDANSFQWHFRYMGAAEPDVHCPTI---IRKSIDSLIYSSNMMEFVKTLGLRMDYEY 143
Query: 114 LRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAV--PVTPGIQLVEVTA--PASSENYT 169
L G+ F I + ++++ + K+ D V P++ + L+E++A P + E Y
Sbjct: 144 LTKGYLF---TKGYIKIIINNITRTEKIGTYDPNVLKPLSDSL-LIEMSAALPDTKE-YM 198
Query: 170 EVASAVSSFCEYLAP 184
A A+ SF + L+P
Sbjct: 199 TTAKALRSFADQLSP 213
>gi|169234862|ref|NP_001108509.1| uncharacterized protein LOC682988 [Rattus norvegicus]
gi|354472402|ref|XP_003498428.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Cricetulus griseus]
gi|149024140|gb|EDL80637.1| rCG31388 [Rattus norvegicus]
gi|165971258|gb|AAI58673.1| LOC682988 protein [Rattus norvegicus]
gi|344245057|gb|EGW01161.1| Mediator of RNA polymerase II transcription subunit 18 [Cricetulus
griseus]
Length = 208
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|335290808|ref|XP_003356288.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 1 [Sus scrofa]
Length = 208
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRTGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|297282705|ref|XP_002802313.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 3 [Macaca mulatta]
Length = 251
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 62 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 118
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 119 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 176
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 177 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQD---VVSDDM 229
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 230 KNFAEQLKPLVHLEK 244
>gi|296207243|ref|XP_002750559.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Callithrix jacchus]
gi|296207245|ref|XP_002750560.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Callithrix jacchus]
Length = 208
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|444519070|gb|ELV12554.1| Mediator of RNA polymerase II transcription subunit 18 [Tupaia
chinensis]
Length = 208
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMMFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+ + W +++LG G LVRS V+ S+N +G+++DHE + G
Sbjct: 76 MSRAGAPWHLRYLGQP--EMGDRNRHALVRSCVDIATSENLTDFLVEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + V V V ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKVVVYKVFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSEDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|109000141|ref|XP_001113062.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 1 [Macaca mulatta]
gi|297282708|ref|XP_002802314.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 4 [Macaca mulatta]
gi|402853622|ref|XP_003891491.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Papio anubis]
gi|402853624|ref|XP_003891492.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Papio anubis]
gi|355557741|gb|EHH14521.1| hypothetical protein EGK_00462 [Macaca mulatta]
gi|355764241|gb|EHH62269.1| hypothetical protein EGM_20508 [Macaca fascicularis]
Length = 208
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQD---VVSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 KNFAEQLKPLVHLEK 201
>gi|48095236|ref|XP_392263.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Apis mellifera]
gi|380013802|ref|XP_003690935.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Apis florea]
Length = 216
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLKNNPNLGNVASEVRLLCDL 58
E ++QG + VE L L+G+C + HE+C + + VR D
Sbjct: 25 EYLLQGSVLDSAVEVLLHRLRGLCDNVDTGPETFNDHEMCFSIRGSEQPLLLRVRRALDY 84
Query: 59 EQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGF 118
+ + W ++++G G + +VRS ++ S + LG +LD E + G+
Sbjct: 85 Q--DMPWQLRYIGQPELGDKSR--PTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGY 140
Query: 119 AFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSF 178
F R ++ VTVS + KM + E++ LVE++ A S +A + F
Sbjct: 141 MF---RKGRMKVTVSKIFKMGQQGKIPESMEAISQSYLVELSVLAPS-GQDAIAEDMRIF 196
Query: 179 CEYLAPLLHLSK 190
E L PL+ L K
Sbjct: 197 AEQLKPLVQLEK 208
>gi|431891179|gb|ELK02056.1| Mediator of RNA polymerase II transcription subunit 18 [Pteropus
alecto]
Length = 208
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSFLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|355701764|gb|AES01785.1| mediator complex subunit 18 [Mustela putorius furo]
Length = 209
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 21 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 77
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 78 MDRGGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 135
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 136 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 188
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 189 RNFAEQLKPLVHLEK 203
>gi|57044032|ref|XP_544460.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Canis lupus familiaris]
gi|301755116|ref|XP_002913377.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Ailuropoda melanoleuca]
gi|410966593|ref|XP_003989815.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 1 [Felis catus]
gi|410966595|ref|XP_003989816.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
isoform 2 [Felis catus]
gi|281351634|gb|EFB27218.1| hypothetical protein PANDA_001193 [Ailuropoda melanoleuca]
Length = 208
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRGGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|395863096|ref|XP_003803745.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Otolemur garnettii]
gi|403308357|ref|XP_003944630.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18
[Saimiri boliviensis boliviensis]
Length = 208
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQD---VVSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|224091427|ref|XP_002188078.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Taeniopygia guttata]
Length = 208
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + Q +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDQSLESLLHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S N +G+++DHE + G
Sbjct: 76 MDKSGMPWHLRYLGQP--EIGDKNRHALVRNCVDIATSDNLTDFLVEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAV 175
F R + + V + ++L T+ P++ LVE V APA + V+ +
Sbjct: 134 HVF---RKGIMKIMVYKIFRILMPGNTESIEPLSLSY-LVELNVVAPAGQDI---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|390356618|ref|XP_781912.2| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Strongylocentrotus purpuratus]
Length = 210
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
P +W ++++G + V VRS + SKN + +G+KLD+E + G F
Sbjct: 84 PSSSWQLRYIGQP--DVSDKSRMVTVRSYHDCATSKNLPNFLDEIGFKLDYEFVAEGHMF 141
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAVSSF 178
R ++ +TVS + K + + + V QLVE V AP+ SEN V + F
Sbjct: 142 ---RKGRLKITVSKLYKFSQPGLPESPLDVMTQSQLVELSVVAPSGSEN---VPEDMRLF 195
Query: 179 CEYLAPLLHLSK 190
E L PL+ + K
Sbjct: 196 AEQLKPLVIVDK 207
>gi|7019886|dbj|BAA90910.1| unnamed protein product [Homo sapiens]
Length = 208
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKTFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 KNFAEQLKPLVHLEK 201
>gi|313226580|emb|CBY21726.1| unnamed protein product [Oikopleura dioica]
gi|313239971|emb|CBY32333.1| unnamed protein product [Oikopleura dioica]
Length = 228
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
E +QG ++ + ++ ++ L+G+C V + HEI + GN + +R+ L Q
Sbjct: 34 EYSLQGSVKDEFIDDVKNRLRGLCDNVECEPFIDHEITYSLQSSSGNAVT-MRVSRSLAQ 92
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
+ W +K++G G S L+R+ V S+N LG++ D E L G+ +
Sbjct: 93 SKMPWQLKYVGALEAGNK----SCLMRNQVTVGCSENVTSFLTELGFRADTEFLSKGYLY 148
Query: 121 HFQRGAQITVTVSSVNKMLK--LHATDEAVPVTPGIQL-VEVTAPASSENYTEVASAVSS 177
R +I + +S + KM + H +P+T + + VT A +E + +
Sbjct: 149 ---RKGRIKIVLSKLCKMKEPGQHQEQNLLPLTKSHMVEISVTTIAGTE---DPGPELRH 202
Query: 178 FCEYLAPLLHLSK 190
F E L P + L+K
Sbjct: 203 FAEMLKPQIKLTK 215
>gi|350405730|ref|XP_003487531.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Bombus impatiens]
Length = 216
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 11/192 (5%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLKNNPNLGNVASEVRLLCDL 58
E ++QG + VE L L+G+C + HE+C + VR D
Sbjct: 25 EYLLQGSVLDSAVEVLLHRLRGLCDNVDTGPETFNDHEMCFSIRGAEQPLLLRVRRALDY 84
Query: 59 EQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGF 118
+ + W ++++G G + +VRS ++ S + LG +LD E + G+
Sbjct: 85 Q--DMPWQLRYIGQPELGDKSR--PTIVRSSLDIATSNTVVDFLTELGCRLDFEYIARGY 140
Query: 119 AFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSF 178
F R ++ VTVS + KM + E++ LVE++ A S +A + F
Sbjct: 141 MF---RKGRMKVTVSKIFKMGQQGKIPESMEAISQSYLVELSVLAPS-GQDAIAEDMRIF 196
Query: 179 CEYLAPLLHLSK 190
E L PL+ L K
Sbjct: 197 AEQLKPLVQLEK 208
>gi|340711191|ref|XP_003394162.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Bombus terrestris]
Length = 216
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 11/192 (5%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLKNNPNLGNVASEVRLLCDL 58
E ++QG + VE L L+G+C + HE+C + VR D
Sbjct: 25 EYLLQGSVLDSAVEVLLHRLRGLCDNVDTGPETFNDHEMCFSIRGAEQPLLLRVRRALDY 84
Query: 59 EQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGF 118
+ + W ++++G G + +VRS ++ S + LG +LD E + G+
Sbjct: 85 Q--DMPWQLRYIGQPELGDKSR--PTIVRSSLDIATSSTVVDFLTELGCRLDFEYIARGY 140
Query: 119 AFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSF 178
F R ++ VTVS + KM + E++ LVE++ A S +A + F
Sbjct: 141 MF---RKGRMKVTVSKIFKMGQQGKIPESMEAISQSYLVELSVLAPS-GQDAIAEDMRIF 196
Query: 179 CEYLAPLLHLSK 190
E L PL+ L K
Sbjct: 197 AEQLKPLVQLEK 208
>gi|391348387|ref|XP_003748429.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Metaseiulus occidentalis]
Length = 262
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRV-HEI----CLKNNPNLGNVASEVRLLC 56
E ++QG I + L L+G+C + + H+I +K+ N + +R
Sbjct: 69 EYLLQGSILDSSADVLLNRLRGLCDNSDSPVELFHDIEQVYTIKDQANQATFS--LRARN 126
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L+ P+ W ++++G G + + RS++E S N + N LG++LD+E +
Sbjct: 127 ALDNPQLPWQLRYVGQP--EVGDKSRFTICRSVIEVGTSSNLVTWLNELGFRLDYEFVAK 184
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G FQ+G ++ + V ++++ + + PV+ L+E V AP S E+ E
Sbjct: 185 GHI--FQKG-RMKILVQKIHRVCQSGNPETLEPVSQSF-LIELSVLAPPSQESLGE---E 237
Query: 175 VSSFCEYLAPLLHLSK 190
+ +F + L PL+ L K
Sbjct: 238 MKAFADQLRPLVELEK 253
>gi|332027346|gb|EGI67430.1| Mediator of RNA polymerase II transcription subunit 18 [Acromyrmex
echinatior]
Length = 221
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 24/201 (11%)
Query: 2 ECVVQGIIETQHVEALEILLQGIC--------GVHRDRLRVHEICL---KNNPNLGNVAS 50
E ++QG + VE L L+G+C G + HE+C ++ P +
Sbjct: 25 EYLLQGSVLDTSVEVLLHRLRGLCDNVDHGPEGFYD-----HEMCFSIRRSTPQEQPLLL 79
Query: 51 EVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLD 110
VR D + W ++++G G + +VRS ++ S + LG KLD
Sbjct: 80 RVRRTLDASNADMPWQLRYIGQPELGDKSR--PTIVRSSIDIATSNTVVEFLTELGCKLD 137
Query: 111 HELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVP-VTPGIQLVEVTAPASSENYT 169
E + G+ F R ++ +TVS + K + E VP + LVE++ A S
Sbjct: 138 FEYVTRGYMF---RKGRMKITVSKIFK-VNQGKVPEGVPEMISQSYLVELSVLAPS-GQD 192
Query: 170 EVASAVSSFCEYLAPLLHLSK 190
+A + F E L PL+ L K
Sbjct: 193 AIAEDMRIFAEQLRPLVQLEK 213
>gi|308474955|ref|XP_003099697.1| hypothetical protein CRE_23566 [Caenorhabditis remanei]
gi|308266352|gb|EFP10305.1| hypothetical protein CRE_23566 [Caenorhabditis remanei]
Length = 234
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK-NNPNLGNVASEVRLLCDLE- 59
ECV+ G I ++V LE L G+C + HE+ + ++ ++++L
Sbjct: 27 ECVLYGSIYIKNVPDLERRLAGLCDPGCEEFFEHEMSFSLRTASTYDLKTDIKLRRRFRS 86
Query: 60 --QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLF-NALGYKLDHELLRV 116
Q + W +K++G ++ +VR + S V N + + +LG ++D+E +
Sbjct: 87 DNQVQNYWQLKYIGVP---EPDQKCPTIVRKEISSLVHSNDMMTYAKSLGLRMDYEYITQ 143
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDE-AVPVTPGIQLVEVTA--PASSENYTEVAS 173
G I + +++ K LK D ++ LVE++ P S+E Y A
Sbjct: 144 G---KLWTKGNIKILHATLTKTLKAGTYDSTSIKSMSDSALVEISISLPESAE-YMTAAK 199
Query: 174 AVSSFCEYLAPLLHLSKPGVSTGV--VPTAAAA 204
+ F + L PL+H+ K + PTA AA
Sbjct: 200 TLRDFADQLMPLVHMEKVDYWKKIFSTPTAPAA 232
>gi|149694166|ref|XP_001504038.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Equus caballus]
gi|335775759|gb|AEH58679.1| mediator of RNA polymerase II transcriptio subunit 18-like protein
[Equus caballus]
Length = 208
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L T+ EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTESTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>gi|320162765|gb|EFW39664.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 319
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 32 LRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE 91
LR+HE+ + P L + VR D + TW + G A A + S +VR+ +
Sbjct: 115 LRIHEMGYMH-PELKRMLLRVRHHLDAD----TWQICAFGQP-EFADALKRSTIVRAGML 168
Query: 92 SKVSKNALR-LFNALGYKLDHELLRVG-FAFHFQ-RGAQITVTVSSVNKMLKLHATDEAV 148
+ S A R L A G+ +DHE+LR G H G ++ V++S + ++ + A
Sbjct: 169 MEASSGAARTLLEATGFGMDHEMLRTGLLCSHLTAAGVRLDVSISRIQRLAQPGDVTSAQ 228
Query: 149 PVTPGI---------QLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSK 190
P+ + LVE++A SE E+ + E LAPL+ LSK
Sbjct: 229 PLQANVLHDVPLHDSLLVEISALGISERIPEIEDEIHLMAEKLAPLVVLSK 279
>gi|307187927|gb|EFN72840.1| Mediator of RNA polymerase II transcription subunit 18 [Camponotus
floridanus]
Length = 221
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICL---KNNPNLGNVASEVRLL 55
E ++QG + VE L L+G+C + HE+C + +P + VR
Sbjct: 25 EYLLQGSVLDTSVEVLLHRLRGLCDNVDTGPEPFYDHEMCFSIRRGSPQEQPLLLRVRRA 84
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D + W ++++G G + +VRS ++ S + LG KLD E +
Sbjct: 85 LDAIHSDMPWQLRYIGQPELGDKSR--PTVVRSSIDIATSNTVVEFLTELGCKLDFEYVT 142
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVP-VTPGIQLVEVTAPASSENYTEVASA 174
G+ F R ++ +TVS + K + E VP + LVE++ A S +A
Sbjct: 143 RGYMF---RKGRMKITVSKIFK-VNQGKVPEGVPEMISQSYLVELSVLAPS-GQDAIAED 197
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 198 MRIFAEQLRPLVQLEK 213
>gi|346472473|gb|AEO36081.1| hypothetical protein [Amblyomma maculatum]
Length = 258
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHR---DRLRVHEICLKNNPNLGNVASEVRLLCD 57
ME ++QG I E L L+G+C + +E+ + + G + VR
Sbjct: 16 MEYLLQGSIMDGACEVLLHRLRGLCDNSDSPIESFHDYEMVFQIRGSTGTPLT-VRARQS 74
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
L+ P+ W +++LG G + +VRS ++ S N N LG++LD E + G
Sbjct: 75 LDSPQMPWHLRYLGQPEVGDKSRH--TVVRSCIDVSTSNNVASFLNELGFRLDFEFVLKG 132
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPG-IQLVEVTAPASSENYTEVASAVS 176
FQ+G ++ + V+ V ++++ + P++ I + V APA E+ + +
Sbjct: 133 HM--FQKG-RMKIIVAKVFRLVQQGNPESIEPISNSHIIELSVIAPAGQES---LGDEMK 186
Query: 177 SFCEYLAP 184
+F + L P
Sbjct: 187 AFADQLKP 194
>gi|308475087|ref|XP_003099763.1| CRE-MDT-18 protein [Caenorhabditis remanei]
gi|308266418|gb|EFP10371.1| CRE-MDT-18 protein [Caenorhabditis remanei]
Length = 234
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK-NNPNLGNVASEVRLLCDLE- 59
ECV+ G I ++V LE L G+C + HE+ + ++ ++++L
Sbjct: 27 ECVLYGSIYIKNVPDLERRLAGLCDPGCEEFFEHEMSFSLRTASTYDLKTDIKLRRRFRS 86
Query: 60 --QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLF-NALGYKLDHELLRV 116
Q + W +K++G ++ +VR + S V N + + +LG ++D+E +
Sbjct: 87 DNQVQNYWQLKYIGVP---EPDQKCPTIVRKEISSLVHSNDMMTYAKSLGLRMDYEYITQ 143
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQ-LVEVTA--PASSENYTEVAS 173
G I + +++ K LK D + + LVE++ P S+E Y A
Sbjct: 144 G---KLWTKGNIKILHATLTKTLKAGTYDSSSIKSMSDSALVEISISLPESAE-YMPAAK 199
Query: 174 AVSSFCEYLAPLLHLSKPGVSTGV--VPTAAAA 204
++ F + L PL+H+ K + PTA AA
Sbjct: 200 SLRDFADQLMPLVHMEKVDYWKKMFSTPTAPAA 232
>gi|193627521|ref|XP_001944679.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Acyrthosiphon pisum]
Length = 224
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLK-NNPNLGNVASEVRLLCD 57
E ++QG + VE L L+G+C + HE+C + + VR D
Sbjct: 28 EYLLQGSVLDSAVEVLLHRLRGLCDNVDSGPETFHDHEMCFSIRSVTPQPLTLRVRRAID 87
Query: 58 -LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L+ P + ++++G G + ++R+ ++ + + +G+++D E +
Sbjct: 88 YLDMP---YQLRYIGQPELGDKSR--PTILRNSIDVATTPTIVDFLTEMGFRMDFEYILR 142
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKL-HATDEAVPVTPGIQLVEVTAPASSENYTEVASAV 175
G+ F R ++ +TVS + KM+ + E+V LVE++ A S N +A +
Sbjct: 143 GYMF---RKGRMKITVSKIFKMMVVGKPAPESVDPISQSYLVELSVLAPS-NQDAIAEDM 198
Query: 176 SSFCEYLAPLLHLSK 190
F E L PL+HL K
Sbjct: 199 RVFAEQLKPLVHLEK 213
>gi|335290810|ref|XP_003356289.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 2 [Sus scrofa]
Length = 215
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 65 WTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQR 124
W +++LG G + LVR+ V+ S+N +G+++DHE + G H R
Sbjct: 90 WHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG---HLFR 144
Query: 125 GAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
+ + V + ++L TD EA+ ++ ++L V APA + V+ + +F E L
Sbjct: 145 KGIMKIVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDMRNFAEQL 200
Query: 183 APLLHLSK 190
PL+HL K
Sbjct: 201 KPLVHLEK 208
>gi|194382240|dbj|BAG58875.1| unnamed protein product [Homo sapiens]
Length = 215
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 65 WTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQR 124
W +++LG G + LVR+ V+ S+N +G+++DHE + G H R
Sbjct: 90 WHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG---HLFR 144
Query: 125 GAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
+ + V + ++L TD EA+ ++ ++L V APA + V+ + +F E L
Sbjct: 145 KGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDMKNFAEQL 200
Query: 183 APLLHLSK 190
PL+HL K
Sbjct: 201 KPLVHLEK 208
>gi|397138640|ref|XP_003846798.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Homo sapiens]
Length = 199
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 65 WTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQR 124
W +++LG G + LVR+ V+ S+N +G+++DHE + G H R
Sbjct: 74 WHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG---HLFR 128
Query: 125 GAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
+ + V + ++L TD EA+ ++ ++L V APA + V+ + +F E L
Sbjct: 129 KGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDMKNFAEQL 184
Query: 183 APLLHLSK 190
PL+HL K
Sbjct: 185 KPLVHLEK 192
>gi|119628106|gb|EAX07701.1| mediator of RNA polymerase II transcription, subunit 18 homolog
(yeast), isoform CRA_b [Homo sapiens]
Length = 163
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 65 WTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQR 124
W +++LG G + LVR+ V+ S+N +G+++DHE + G H R
Sbjct: 38 WHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG---HLFR 92
Query: 125 GAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
+ + V + ++L TD EA+ ++ ++L V APA + V+ + +F E L
Sbjct: 93 KGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDMKNFAEQL 148
Query: 183 APLLHLSK 190
PL+HL K
Sbjct: 149 KPLVHLEK 156
>gi|297282703|ref|XP_002802312.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like isoform 2 [Macaca mulatta]
Length = 215
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 65 WTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQR 124
W +++LG G + LVR+ V+ S+N +G+++DHE + G H R
Sbjct: 90 WHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG---HLFR 144
Query: 125 GAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182
+ + V + ++L TD EA+ ++ ++L V APA + V+ + +F E L
Sbjct: 145 KGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQD---VVSDDMKNFAEQL 200
Query: 183 APLLHLSK 190
PL+HL K
Sbjct: 201 KPLVHLEK 208
>gi|302853464|ref|XP_002958247.1| hypothetical protein VOLCADRAFT_119901 [Volvox carteri f.
nagariensis]
gi|300256435|gb|EFJ40701.1| hypothetical protein VOLCADRAFT_119901 [Volvox carteri f.
nagariensis]
Length = 285
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESK-VSKNALRLFNALGYKLDHELLRV 116
LE P W V+H G ++G + +R ++++ L + ALG KL++E+ R
Sbjct: 122 LEDPPERWEVRHEGPPLQGPALNTLPAAMREVLDTACFGSGTLEFWKALGGKLEYEMYRE 181
Query: 117 G----FAFHFQRGAQITVTVSSVNKMLKLHATDEAVP---VTPGIQ-----LVEVTAPAS 164
G FH G +I V ++SV + + H +A V PG +VEV+ +
Sbjct: 182 GNEYSIIFH---GHEIKVVLASVYALAEPHVLKDASSLKRVAPGSSGSGNLVVEVSLLVA 238
Query: 165 SENYTEVASAVSSFCEYLAPLLHLSK 190
+ E A+ + +F LAP + L +
Sbjct: 239 EGRHYEGANLLGAFGAQLAPYVRLIR 264
>gi|195448310|ref|XP_002071601.1| GK10069 [Drosophila willistoni]
gi|194167686|gb|EDW82587.1| GK10069 [Drosophila willistoni]
Length = 219
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 19/197 (9%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGN-VASEVRLL 55
+E ++QG I VE L L+G+C V H E+C+ PN + VR
Sbjct: 25 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPNSNQPLLLRVRRA 84
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D + P +++LG + ++ LVRS ++ + L +G++L+ E L
Sbjct: 85 MDRDAP---MQMRYLG---QPEVDQRRPTLVRSCMDCACTNGILDFLTEMGFRLEFEYLA 138
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVAS 173
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 139 KGYMF---RKGRMKITVSKLIKIVHGKQQDMANEPISQSYIVELSVVAPTGQEN---VGE 192
Query: 174 AVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 193 EMRVFAEQLKPLVQLEK 209
>gi|195165140|ref|XP_002023397.1| GL20340 [Drosophila persimilis]
gi|194105502|gb|EDW27545.1| GL20340 [Drosophila persimilis]
Length = 217
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN N +R+
Sbjct: 23 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPETFHDLEVCMSLRQPN-SNQPLLLRVRR 81
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L + P + +++LG + ++ LVRS ++ + L +G++L+ E +
Sbjct: 82 ALGRDAP-FQMRYLG---QPEVDQRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 138 GYMF---RKGRMKITVSKLIKIIPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 192 MRVFAEQLKPLVQLDK 207
>gi|125981473|ref|XP_001354740.1| GA13258 [Drosophila pseudoobscura pseudoobscura]
gi|54643051|gb|EAL31795.1| GA13258 [Drosophila pseudoobscura pseudoobscura]
Length = 217
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN N +R+
Sbjct: 23 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPETFHDLEVCMSLRQPN-SNQPLLLRVRR 81
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L + P + +++LG + ++ LVRS ++ + L +G++L+ E +
Sbjct: 82 ALGRDAP-FQMRYLG---QPEVDQRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 138 GYMF---RKGRMKITVSKLIKIIPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 192 MRVFAEQLKPLVQLDK 207
>gi|194912677|ref|XP_001982554.1| GG12884 [Drosophila erecta]
gi|195347725|ref|XP_002040402.1| GM19171 [Drosophila sechellia]
gi|195469814|ref|XP_002099831.1| GE16712 [Drosophila yakuba]
gi|190648230|gb|EDV45523.1| GG12884 [Drosophila erecta]
gi|194121830|gb|EDW43873.1| GM19171 [Drosophila sechellia]
gi|194187355|gb|EDX00939.1| GE16712 [Drosophila yakuba]
Length = 217
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 17/196 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN N +R+
Sbjct: 23 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPN-ANQPLLLRVRR 81
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L + P + +++LG ++ LVRS ++ + L +G++L+ E +
Sbjct: 82 ALGRDAP-FQMRYLGNP---EVDQRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 138 GYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 192 MRVFAEQLKPLVQLEK 207
>gi|195047042|ref|XP_001992260.1| GH24653 [Drosophila grimshawi]
gi|193893101|gb|EDV91967.1| GH24653 [Drosophila grimshawi]
Length = 216
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLKNNPNLGNVASEVRLLCD 57
+E ++QG I VE L L+G+C V R H E+C+ +R+
Sbjct: 22 LEYLLQGSILDTAVEHLMHRLKGLCDNVDTSPERFHDLEVCMSLRQPTSPQPLLLRVRRA 81
Query: 58 LEQPEPTWTVKHLGGA---MRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELL 114
L Q P + +++LG MR LVRS ++ + L +G++L+ E +
Sbjct: 82 LGQDAP-FQMRYLGQPEVDMRRP------TLVRSCMDCACTNGILDFLTEMGFRLEFEYI 134
Query: 115 RVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVA 172
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 135 AKGYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VG 188
Query: 173 SAVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 189 EEMRVFAEQLKPLVQLEK 206
>gi|195134216|ref|XP_002011533.1| GI11081 [Drosophila mojavensis]
gi|193906656|gb|EDW05523.1| GI11081 [Drosophila mojavensis]
Length = 217
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 22/199 (11%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN +R+
Sbjct: 22 LEYLLQGSILDTAVEHLMHRLKGLCDNVDTSPETFHDLEVCMSLRQPNSPQPVLLLRVRR 81
Query: 57 DLEQPEPTWTVKHLGGA---MRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHEL 113
L + P + +++LG MR LVRS ++ + L + +G++L+ E
Sbjct: 82 ALGRDAP-FQLRYLGQPEVDMRRP------TLVRSCMDCACTNGILDFLSEMGFRLEFEY 134
Query: 114 LRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEV 171
+ G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 135 IAKGYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---V 188
Query: 172 ASAVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 189 GEEMRVFAEQLKPLVQLDK 207
>gi|328768299|gb|EGF78346.1| hypothetical protein BATDEDRAFT_90909 [Batrachochytrium
dendrobatidis JAM81]
Length = 218
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 33 RVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92
R +I L+ + N+ + S D E WT+ HL A ++++ R++ +
Sbjct: 73 RNDDILLRLHSNVLDAESNFIHFLDRE-----WTLLHLSPAEPPKAGQKLANH-RAIHHT 126
Query: 93 KVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTP 152
+++ + ++ LGYK + E++R GF F F Q+ + + + ++ A+PV
Sbjct: 127 RITGDVIKYIEMLGYKFEFEVVRRGFTFQF---GQVRIDIFRLYQIQDQFRVSSAIPVVS 183
Query: 153 G--IQLVEVTAPA-SSENYTEVASAVSSFCEYLA 183
+V+VT+P E+ ++ + F +L+
Sbjct: 184 NSTTWIVQVTSPILGQEHVVHMSDNLFQFAAHLS 217
>gi|313241023|emb|CBY33325.1| unnamed protein product [Oikopleura dioica]
Length = 228
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 13/192 (6%)
Query: 2 ECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
E +QG ++ + V+ + L+G+C V + HEI G S +R+ L Q
Sbjct: 33 EYSLQGSVKDEFVDDFKNRLRGLCDNVEAEPFIDHEITYSLQSATGGTVS-MRVSRSLAQ 91
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
+ W +K++G G + L+R+ V S+N LG++ D E L G+ +
Sbjct: 92 SKMPWQLKYVGALEAG----NKTCLMRNHVTVGCSENVTSFLTELGFRADTEFLSKGYLY 147
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEA--VPVTPGIQLVEVTAPASSENYTEVASAVSSF 178
R ++ + +S + KM + +E +P+T VEV+ + + + F
Sbjct: 148 ---RKGRVKIVLSKLCKMKEPGRPEEQNLIPLTKS-HFVEVSVTVLT-GTEDPGIELKHF 202
Query: 179 CEYLAPLLHLSK 190
E L P + L K
Sbjct: 203 AEMLKPQVKLMK 214
>gi|313226045|emb|CBY21188.1| unnamed protein product [Oikopleura dioica]
Length = 228
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 2 ECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
E +QG ++ + V+ ++ L+G+C V + HEI G S +R+ L Q
Sbjct: 33 EYSLQGSVKDEFVDDVKNRLRGLCDNVEAEPFIDHEITYSLQSATGGTVS-MRVSRSLAQ 91
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
+ W +K++G G + L+R+ V S+N LG++ D E L G+ +
Sbjct: 92 SKMPWQLKYVGALEAG----NKTCLMRNHVTVGCSENVTSFLTELGFRADTEFLSKGYLY 147
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEA--VPVTPGIQLVEVTAPASSENYTEVASAVSSF 178
R ++ + +S + KM + +E +P+T VEV+ + + + F
Sbjct: 148 ---RKGRVKIVLSKLCKMKEPGRPEEQNLIPLTKS-HFVEVSVTVLT-GTEDPGIELKHF 202
Query: 179 CEYLAPLLHLSK 190
E L P + L K
Sbjct: 203 AEMLKPQVKLMK 214
>gi|194763325|ref|XP_001963783.1| GF21201 [Drosophila ananassae]
gi|190618708|gb|EDV34232.1| GF21201 [Drosophila ananassae]
Length = 217
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 19/197 (9%)
Query: 1 MECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLK-NNPNLGN-VASEVRLL 55
+E ++QG I VE L L+G+C + E+C+ PN + VR
Sbjct: 23 LEYLLQGSIMDSAVEHLIHRLKGLCDNVDTSPEPFNDLEVCMSLRQPNATQPLLLRVRRA 82
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
+ P + +++LG + ++ LVRS ++ + L +G++L+ E +
Sbjct: 83 LSRDAP---FQMRYLG---QPEVDQRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIA 136
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVAS 173
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 137 KGYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGE 190
Query: 174 AVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 191 EMRVFAEQLKPLVQLEK 207
>gi|28571092|ref|NP_569948.3| mediator complex subunit 18, isoform A [Drosophila melanogaster]
gi|74949836|sp|Q9XZT1.1|MED18_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18; AltName:
Full=dp28b
gi|4725973|emb|CAB41707.1| EG:63B12.13 [Drosophila melanogaster]
gi|28381554|gb|AAF45675.3| mediator complex subunit 18, isoform A [Drosophila melanogaster]
gi|224494896|gb|ACN52010.1| SD20918p [Drosophila melanogaster]
Length = 217
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN N +R+
Sbjct: 23 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPN-ANQPLLLRVRR 81
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L + P + +++LG + LVRS ++ + L +G++L+ E +
Sbjct: 82 ALGRDAP-FQMRYLGNPEVDL---RRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 138 GYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 192 MRVFAEQLKPLVQLEK 207
>gi|170039020|ref|XP_001847344.1| mediator complex [Culex quinquefasciatus]
gi|167862653|gb|EDS26036.1| mediator complex [Culex quinquefasciatus]
Length = 214
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLK---NNPNLGNVASEVRLL 55
E ++QG I E L L+G+C + +E+CL N + VR
Sbjct: 26 EFLLQGSILDSAAEHLLHRLRGLCDNVDTGPETFSDYEMCLSLKVPNEKAPVMTLRVRKA 85
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D++ P + ++++G G LVRS ++ S + + +G+++D E +
Sbjct: 86 QDVDAP---YQLRYIGQPELGDRTR--PTLVRSSLDIACSPHVVDFLTEMGFRVDFEYIT 140
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVAS 173
G+ F R ++ VTVS + K+ + A P++ LVE V AP + +A
Sbjct: 141 KGYMF---RKGRMKVTVSKIFKV------NSAEPISQSY-LVELSVLAPTGQD---AIAE 187
Query: 174 AVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 188 DMRIFAEQLKPLVQLEK 204
>gi|220949294|gb|ACL87190.1| CG14802-PB [synthetic construct]
Length = 154
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 74 MRGAGAEQISV----LVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQIT 129
MR G ++ + LVRS ++ + L +G++L+ E + G+ F R ++
Sbjct: 28 MRYLGNPEVDLRRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAKGYMF---RKGRMK 84
Query: 130 VTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAVSSFCEYLAPLLH 187
+TVS + K++ D A +VE V AP EN V + F E L PL+
Sbjct: 85 ITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEEMRVFAEQLKPLVQ 141
Query: 188 LSK 190
L K
Sbjct: 142 LEK 144
>gi|195397475|ref|XP_002057354.1| GJ16392 [Drosophila virilis]
gi|194147121|gb|EDW62840.1| GJ16392 [Drosophila virilis]
Length = 216
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN
Sbjct: 22 LEYLLQGSILDTAVEHLMHRLKGLCDNVDTSPETFHDLEVCMSLRQPN------------ 69
Query: 57 DLEQPEPTW--TVKHLGG----AMRGAGAEQISV----LVRSMVESKVSKNALRLFNALG 106
P+P + LG MR G ++ + LVRS ++ + L + +G
Sbjct: 70 ---SPQPLLLRVRRALGRDAPFQMRYLGQPEVDMRRPTLVRSCMDCACTNGILDFLSEMG 126
Query: 107 YKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPAS 164
++L+ E + G+ F R ++ +TVS + K++ D A +VE V AP
Sbjct: 127 FRLEFEYIAKGYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTG 183
Query: 165 SENYTEVASAVSSFCEYLAPLLHLSK 190
EN V + F E L PL+ L K
Sbjct: 184 QEN---VGEEMRLFAEQLKPLVQLEK 206
>gi|17506247|ref|NP_491869.1| Protein MDT-18 [Caenorhabditis elegans]
gi|75020962|sp|Q966M5.1|MED18_CAEEL RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|351060427|emb|CCD68096.1| Protein MDT-18 [Caenorhabditis elegans]
Length = 232
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 15/210 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK-NNPNLGNVASEVRLLCDLE- 59
ECV+ G I ++V LE L G+C + HE+ + + ++ ++++L
Sbjct: 27 ECVLYGSIFAKNVPDLERRLAGLCDPGCEEFFEHEMSFSLRSSGIMDIKTDIKLRRRFRT 86
Query: 60 --QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHELLRV 116
+ + W +K++G ++ +VR + S V S++ + +LG ++D+E +
Sbjct: 87 EHRIQNYWQLKYIGVP---EPDQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQ 143
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATD-EAVPVTPGIQLVEVTA--PASSENYTEVAS 173
G I + S + + D ++ LVE++ P S+E Y A
Sbjct: 144 G---KLWTKGNIKILHSILTSTSRAGTYDSNSIKSVSDSALVEISISLPESAE-YMPAAK 199
Query: 174 AVSSFCEYLAPLLHLSKPGVSTGVVPTAAA 203
++ F + L PL+++ K + P AA
Sbjct: 200 SLRDFADQLMPLVNMEKVDYWKKMFPAQAA 229
>gi|157127945|ref|XP_001661240.1| mediator complex, subunit, putative [Aedes aegypti]
gi|121957211|sp|Q17IN5.1|MED18_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
18; AltName: Full=Mediator complex subunit 18
gi|108882300|gb|EAT46525.1| AAEL002284-PA [Aedes aegypti]
Length = 215
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLK---NNPNLGNVASEVRLL 55
E ++QG I E L L+G+C + +E+CL N + VR
Sbjct: 27 EYLLQGSILDSAAEHLLHRLRGLCDNVDTGPEAFADYEMCLSLKVPNEKTPVMTVRVRKA 86
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D + P + ++++G G LVRS ++ + + + +G+++D E +
Sbjct: 87 QDTDAP---YQLRYIGQP--ELGDRNRPTLVRSSLDIACTPHVVDFLTEMGFRVDFEYIT 141
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVAS 173
G+ F R ++ VTVS K+ K+++++ P++ LVE V AP + +A
Sbjct: 142 KGYMF---RKGRMKVTVS---KIFKVNSSE---PISQSY-LVELSVLAPTGQD---VIAD 188
Query: 174 AVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 189 DMRIFAEQLKPLVQLEK 205
>gi|449670759|ref|XP_004207342.1| PREDICTED: mediator of RNA polymerase II transcription subunit
18-like [Hydra magnipapillata]
Length = 200
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 21 LQGICG---VHRDRLRVHE-ICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRG 76
L+G+C + HE I + N G V + + L PE +++LG + G
Sbjct: 29 LKGLCDNAVLSETMYEDHEAIYIIKNQTSGAVTVSLSVKRSLLNPEKAHRIQYLGN-VEG 87
Query: 77 AGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVN 136
+ + + RS++E + S N LG++ D+E L G++F+ + + VS ++
Sbjct: 88 MNLNRAATM-RSIIEVETSDNISTYLEQLGFQFDYETLLRGYSFY---KGPMRINVSRLH 143
Query: 137 KMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSK 190
K+ + +P+T LVE+T + + + +F E+L P++ L K
Sbjct: 144 KIPERGNLSNIMPMTDSY-LVELTLHTLVQQ-DSLCEEMKAFAEHLKPIVVLDK 195
>gi|325186131|emb|CCA20632.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 250
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 65 WTVKHLGGAMRGAGAEQ-----ISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
W +++LG + +EQ + V RS + S+N +G++ ++ +R+G
Sbjct: 93 WELRYLGRWEQKKISEQATNFAVGVPYRSQIAVSTSQNVCSFLQMMGFRQAYQFMRLG-- 150
Query: 120 FHFQRGAQITVTVSSVNKMLKLHATDEAVPVTP------GIQLVEVTAPASSENYTEVAS 173
+Q G I + + + K L+ +E + LVE++A S EN ++
Sbjct: 151 TRWQLGDGIMIEATRI-KALETDDPNEEFRMVDLENLRVEAFLVEISALTSDENIDVISK 209
Query: 174 AVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSL 208
+ F L PLL + +P S ++ + A A +
Sbjct: 210 QIRRFTTDLIPLL-IERPLESKDILSSTATLAAEM 243
>gi|46811818|gb|AAT02163.1| hypothetical protein L3ni56 isoform a [Dictyocaulus viviparus]
Length = 217
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK----NNPNLGNVASEVRLLCD 57
E ++ G + ++ LE L G+C H++ +P+ V +R +
Sbjct: 24 ELILYGSVFADNLPDLERRLTGLCDPGSTEFHEHDLSFSLRTGTDPD---VTIRLRRRFN 80
Query: 58 LEQ-PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLF-NALGYKLDHELLR 115
++ W +++GG ++ V+VR +++S + + F LG ++D+E +
Sbjct: 81 VDSFTSHQWQFRYIGGP---EPDQKCPVIVRKVIDSIAYSHLMMDFVKTLGLRMDYEYIA 137
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEA-VPVTPGIQLVEVTA--PASSENYTEVA 172
G + ++ + +S + K K D++ + LVE++ P S+E YT A
Sbjct: 138 KGTVWI---NGKMKIVISQIQKTEKAGHYDQSNLKRFSDSYLVEISVCIPESAE-YTSAA 193
Query: 173 SAVSSFCEYLAPLLHLSK 190
+ F + L PL+ + K
Sbjct: 194 KQLRDFADQLLPLVEIEK 211
>gi|385682203|ref|ZP_10056131.1| ABC transporter substrate-binding protein [Amycolatopsis sp. ATCC
39116]
Length = 412
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 100 RLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEV 159
RLF GY + L G F GA++T +V ++ KLH TDE V V I E
Sbjct: 33 RLFGTSGYLVTANLTESGGIFE---GAEVTYRGVAVGRVSKLHLTDEGVAVDLDITSDE- 88
Query: 160 TAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMSD 211
PA +E SAV L P H P ++ G V T+ A+ L D
Sbjct: 89 KIPADTEAVVATRSAVGEQYVDLRP-KHQDGPYLADGSVITSDRTAIPLSPD 139
>gi|390353361|ref|XP_003728093.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like
[Strongylocentrotus purpuratus]
Length = 1763
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 129 TVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHL 188
TVT SS K D++VP+T G+QL+ A + + TEVASA +S AP+L +
Sbjct: 8 TVTPSSSGNGDK----DDSVPITQGLQLLAKLASPTVVSQTEVASASTS-----APVL-V 57
Query: 189 SKPGVSTGVV 198
+ PG S+G V
Sbjct: 58 TSPGASSGSV 67
>gi|281208113|gb|EFA82291.1| putative mediator complex subunit 18 [Polysphondylium pallidum
PN500]
Length = 236
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 80 EQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKML 139
++I+ ++R++V+ VS ++L +GY D+E GF + + V++ V
Sbjct: 132 DKINAVIRNVVDISVSDKFIQLIENMGYVKDYEYYVDGFCY-----STYYVSLYIVQHSR 186
Query: 140 KLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLL 186
L + +T +VE+ + E +++ A ++++ EYL P +
Sbjct: 187 SLPDGSQGESLTKN-SMVELQCLSGEEGFSQAADYLNTYAEYLYPFV 232
>gi|354557822|ref|ZP_08977079.1| Protein of unknown function DUF2088 [Desulfitobacterium
metallireducens DSM 15288]
gi|353549496|gb|EHC18937.1| Protein of unknown function DUF2088 [Desulfitobacterium
metallireducens DSM 15288]
Length = 428
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 109 LDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLH 142
LDH + + F HFQ G ++T+ VS V +++KLH
Sbjct: 46 LDHPVGTLPFNSHFQAGDKVTIVVSDVTRLVKLH 79
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,161,633,456
Number of Sequences: 23463169
Number of extensions: 114997192
Number of successful extensions: 338642
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 338503
Number of HSP's gapped (non-prelim): 139
length of query: 217
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 80
effective length of database: 9,144,741,214
effective search space: 731579297120
effective search space used: 731579297120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)