Query 027885
Match_columns 217
No_of_seqs 76 out of 78
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3264 Uncharacterized conser 100.0 8E-80 1.7E-84 522.2 1.6 199 1-206 19-221 (221)
2 PF09637 Med18: Med18 protein; 100.0 2.9E-39 6.2E-44 284.2 20.1 188 1-194 1-245 (250)
3 TIGR00318 cyaB adenylyl cyclas 98.1 0.00071 1.5E-08 56.6 17.7 144 12-183 11-158 (174)
4 cd07890 CYTH-like_AC_IV-like A 97.1 0.083 1.8E-06 43.5 16.5 144 12-183 9-155 (169)
5 COG1437 CyaB Adenylate cyclase 95.9 0.96 2.1E-05 39.0 17.7 143 13-183 12-159 (178)
6 PF01928 CYTH: CYTH domain; I 94.8 1.8 4E-05 35.2 14.7 143 12-183 13-168 (185)
7 cd07758 ThTPase Thiamine Triph 94.6 2.5 5.4E-05 36.2 14.9 145 15-183 11-176 (196)
8 PLN02318 phosphoribulokinase/u 86.9 26 0.00056 35.9 14.7 92 34-138 279-371 (656)
9 PF10980 DUF2787: Protein of u 83.1 3.6 7.8E-05 33.6 5.8 22 46-70 39-60 (128)
10 PRK14644 hypothetical protein; 52.7 29 0.00063 28.4 4.7 66 101-181 7-86 (136)
11 PHA00432 internal virion prote 50.9 11 0.00024 31.3 1.9 26 97-122 106-131 (137)
12 PRK14639 hypothetical protein; 43.8 1E+02 0.0022 25.1 6.7 70 98-181 3-89 (140)
13 PF14814 UB2H: Bifunctional tr 43.5 28 0.00061 25.8 3.0 16 96-111 10-25 (85)
14 KOG4431 Uncharacterized protei 41.7 24 0.00053 27.8 2.5 43 159-210 7-49 (100)
15 PRK14643 hypothetical protein; 41.0 76 0.0016 26.7 5.6 76 97-181 14-105 (164)
16 PRK14647 hypothetical protein; 37.4 1.5E+02 0.0033 24.6 6.8 73 97-182 13-101 (159)
17 COG4293 Uncharacterized protei 37.3 48 0.001 28.4 3.8 55 124-180 119-183 (184)
18 TIGR02914 EpsI_fam EpsI family 34.2 57 0.0012 26.9 3.8 36 151-186 135-170 (174)
19 TIGR00191 thrB homoserine kina 33.3 89 0.0019 28.0 5.2 47 161-209 54-107 (302)
20 cd03421 SirA_like_N SirA_like_ 30.4 58 0.0012 22.5 2.8 31 89-121 31-62 (67)
21 PRK01212 homoserine kinase; Pr 29.7 1E+02 0.0022 27.3 4.9 47 161-209 56-108 (301)
22 PF11240 DUF3042: Protein of u 28.5 19 0.00041 25.4 -0.0 19 192-210 7-25 (54)
23 cd06587 Glo_EDI_BRP_like This 28.1 1.6E+02 0.0035 19.9 4.8 40 96-135 10-50 (112)
24 PF08608 Wyosine_form: Wyosine 28.1 64 0.0014 23.0 2.7 32 155-187 5-45 (62)
25 PRK14640 hypothetical protein; 27.9 2.6E+02 0.0056 23.1 6.6 73 97-182 11-99 (152)
26 PF10482 CtIP_N: Tumour-suppre 27.2 35 0.00076 27.7 1.3 16 12-27 56-72 (120)
27 cd07417 MPP_PP5_C PP5, C-termi 25.0 83 0.0018 29.1 3.5 38 95-135 232-273 (316)
28 PRK14646 hypothetical protein; 24.2 3.4E+02 0.0074 22.5 6.7 76 97-183 12-103 (155)
29 PF08527 PAD_M: Protein-argini 22.9 3E+02 0.0064 23.4 6.1 77 31-135 79-158 (159)
30 COG0083 ThrB Homoserine kinase 22.8 1.5E+02 0.0032 27.6 4.6 48 161-210 53-105 (299)
31 PTZ00167 RNA polymerase subuni 21.9 92 0.002 26.1 2.9 26 108-133 82-109 (144)
32 COG0779 Uncharacterized protei 21.3 4.2E+02 0.0091 22.2 6.7 73 96-182 12-101 (153)
33 PF11984 DUF3485: Protein of u 21.1 1.3E+02 0.0028 24.9 3.7 34 152-186 168-201 (206)
34 PLN02451 homoserine kinase 21.1 1.7E+02 0.0037 27.4 4.9 47 161-209 108-161 (370)
35 cd07235 MRD Mitomycin C resist 21.0 3.3E+02 0.0072 19.7 7.5 23 90-112 4-28 (122)
36 PF01418 HTH_6: Helix-turn-hel 20.7 37 0.0008 24.5 0.3 16 93-108 45-61 (77)
37 cd09012 Glo_EDI_BRP_like_24 Th 20.2 2.2E+02 0.0047 21.0 4.4 42 89-132 3-47 (124)
38 smart00658 RPOL8c RNA polymera 20.1 1.3E+02 0.0028 25.1 3.3 25 109-133 85-113 (143)
39 PRK14608 4-diphosphocytidyl-2- 20.1 2.1E+02 0.0045 25.7 5.0 47 161-209 65-117 (290)
No 1
>KOG3264 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8e-80 Score=522.23 Aligned_cols=199 Identities=51% Similarity=0.784 Sum_probs=191.9
Q ss_pred CeeEEEEEEeccChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCcc
Q 027885 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAE 80 (217)
Q Consensus 1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~ 80 (217)
|||+|||||++++||+|++||+|||||++|+|++|||||...++.++.|.++|+||++++++++||+||+|+||+| |+
T Consensus 19 mEcvlqGsI~~~~ve~Le~rL~GLCd~~~E~f~dhEmcfslr~~~~~~~~l~R~~r~ldr~~~~wqlkylG~pe~g--d~ 96 (221)
T KOG3264|consen 19 MECVLQGSILDQHVEALEHRLQGLCDNQRERFRDHEMCFSLRPNLAVVPSLLRLRRDLDRPEAPWQLKYLGGPERG--DD 96 (221)
T ss_pred chhheechHhhcchHHHHHHHHhccccchhhhhhhhheeeecCCcCccHHHHHHHHhccCCCCceEEEecCCCCcc--cc
Confidence 7999999999999999999999999999999999999998878777889999999999999999999999999975 99
Q ss_pred CcceeeeeeEEeeeeccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC--CCCcCCCceeEEE
Q 027885 81 QISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVE 158 (217)
Q Consensus 81 ~~~a~VR~~id~~~S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d--~~~~~~~~s~LVE 158 (217)
+||++||||||++||+|+++|+++||||+||||+++||+|+ ||+|||+||+.+++..||.+| +++|+++ |||||
T Consensus 97 ~~ptlVRn~id~~~S~n~l~~~~~lG~rlDhEy~akG~lf~---kgrmkI~vs~l~~~~~pg~~d~~s~~pvS~-sylve 172 (221)
T KOG3264|consen 97 QRPTLVRNCIDSAVSKNALRFLYELGFRLDHEYLAKGFLFR---KGRMKISVSKLSVIKVPGVHDIDSAEPVSP-SYLVE 172 (221)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHhcccccHHHHhhhhhhc---ccceEEEEEEEEEeccCcccccccccccCc-ccEEE
Confidence 99999999999999999999999999999999999999999 799999999999999999888 7888998 69999
Q ss_pred EE--cCCCCCChHHHHHHHHHHHhhhccceeeecCCcccCcccchhHHHH
Q 027885 159 VT--APASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAV 206 (217)
Q Consensus 159 vS--ap~~~e~~~~~a~~i~~FaeqL~Plv~L~K~~~~~~~~~t~~~~a~ 206 (217)
|| ||+++||| ++|++||.|||||+|||||||||||++++||||||||
T Consensus 173 lsV~aPa~~E~~-~va~~mr~FaeqL~PLVhleKidy~r~m~p~~aa~~~ 221 (221)
T KOG3264|consen 173 LSVVAPAGQENY-EVAAAMRSFAEQLKPLVHLEKIDYKRLMVPTAAAAAA 221 (221)
T ss_pred EEEecCCccchh-hHHHHHHHHHHHhhhhhccccCChhhccccccccccC
Confidence 97 99999999 9999999999999999999999999999999999875
No 2
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=100.00 E-value=2.9e-39 Score=284.18 Aligned_cols=188 Identities=26% Similarity=0.406 Sum_probs=154.7
Q ss_pred CeeEEEEEEeccChHHHHHHhhhhccC-CCccceEEeEEEeeCC----------CCCCCCeEEEEeeeCCCC--------
Q 027885 1 MECVVQGIIETQHVEALEILLQGICGV-HRDRLRVHEICLKNNP----------NLGNVASEVRLLCDLEQP-------- 61 (217)
Q Consensus 1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~-~~e~f~~hE~v~k~~~----------~~g~~~~~lRlrr~L~~p-------- 61 (217)
|||+|+|+|.+++.+.+++||+||||+ .|++|++||+|||-.+ +.+..++.+|+++.+...
T Consensus 1 ~El~L~~sV~~~~~~~~l~~L~gl~~~~~p~~~~~~~lvfkp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (250)
T PF09637_consen 1 QELSLFGSVPDSDYEQLLSRLRGLCGMVQPEEFAERELVFKPNRSYKPSFLPGKNQQVQPLRMRLSQQLPKQSNGGQYYY 80 (250)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHCCC--EEEEEEEEEEEEE-TTS---SB-SSSBB-GGCSEEEEEEGGGCGHSSSTSC
T ss_pred CeEEEEEEEecchHHHHHHHHHHHhCCCCccceeeEEEEecCCCcccccccCCCcCCCcHHHHHHHHhhhhhcccccccc
Confidence 699999999999999999999999999 7999999999997321 124578899999996432
Q ss_pred --------------------------CCceEEEEecccccCCCccCcceeeeeeEEee---eeccHHHHHHHhCceeeEE
Q 027885 62 --------------------------EPTWTVKHLGGAMRGAGAEQISVLVRSMVESK---VSKNALRLFNALGYKLDHE 112 (217)
Q Consensus 62 --------------------------~~~W~lry~G~pe~g~g~~~~~a~VR~~id~~---~S~~v~~Fl~~LGfr~d~E 112 (217)
+.+|+|||.|.||+| + ++++++|+++++. +++++++|+++|||+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~W~Lr~~d~Pe~~--~-~~~v~~r~~~~~~i~~~~~~~~~fl~~lGy~~~~E 157 (250)
T PF09637_consen 81 QVVKDVSEDDFGIEASELFSGDDQSGSQPWTLRYSDIPEAG--K-NRPVTVRTIIESTIVGTSGSLLSFLNELGYRFDYE 157 (250)
T ss_dssp CCCTTHSSSTT-TTGGG---------SSSEEEEEEE--GCC--S-TTSSEEEEEEEEEEEESSSSHHHHHHHTTEEEEEE
T ss_pred ccccccccccCCccccccccccccccCCcEEEEEecCCCCC--C-CCceeEEEEEEEEEecCCCCHHHHHHHcCCceEEE
Confidence 478999999999973 5 8999999999998 5899999999999999999
Q ss_pred EEEEeeEEEEeeCceEEEEEEEEeeecccCCC----CCCCc-CCCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhc
Q 027885 113 LLRVGFAFHFQRGAQITVTVSSVNKMLKLHAT----DEAVP-VTPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLA 183 (217)
Q Consensus 113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~----d~~~~-~~~~s~LVEvS--ap~~~e~--~~~~a~~i~~FaeqL~ 183 (217)
|+.+||+|. +|+|+|+++||+++.+.+.. +...+ -.+++|+||++ +|.++|. +..+.++|..|+|||+
T Consensus 158 yv~~G~~F~---~g~i~I~l~ri~~~~~~~~~~~~~~~l~~~d~s~~~lv~a~v~v~~~~d~~~i~~~~~~L~~~~~~Lk 234 (250)
T PF09637_consen 158 YVVEGYRFF---KGDIVIELFRIFKVPPPGQYPPPFDKLKPLDPSGSWLVEASVNVPDGTDPERINKASKELLKFQEQLK 234 (250)
T ss_dssp EEEEEEEEE---ECCEEEEEEEEEEEETTCCE---SS-EEECTTTTEEEEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEE---ECCEEEEEEEEEecCCCCCCCCCcccCCccCCCCCEEEEEEEEccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999 59999999999999888877 44444 57788999997 7766554 5566777888999999
Q ss_pred cceeeecCCcc
Q 027885 184 PLLHLSKPGVS 194 (217)
Q Consensus 184 Plv~L~K~~~~ 194 (217)
|+|+|+++|+.
T Consensus 235 ~~v~L~~~DR~ 245 (250)
T PF09637_consen 235 GLVDLEKPDRK 245 (250)
T ss_dssp TTS--B---GG
T ss_pred ccEEEEecccc
Confidence 99999999985
No 3
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=98.06 E-value=0.00071 Score=56.59 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=99.8
Q ss_pred cChHHHHHHhhhhccCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027885 12 QHVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (217)
Q Consensus 12 ~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i 90 (217)
.+.+.+.++|+.+.........++-+.|-.+. ........||+|+. + ..+.+-|=|++. + ....+|.-+
T Consensus 11 ~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~-~---~~~~lT~Kgp~~----~--~~~~~~~E~ 80 (174)
T TIGR00318 11 PDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKL-T---GEKFVTYKGPKI----D--NESKTRKEI 80 (174)
T ss_pred CCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEc-C---CcEEEEEeCCcc----C--CcceEEEEE
Confidence 36789999999765443345567777786432 11234679999986 2 345556656433 2 235699999
Q ss_pred Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCC-CCC
Q 027885 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPAS-SEN 167 (217)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~-~e~ 167 (217)
++.+.+ .+...|..|||+...++-+.-..|++ +.++|++..+-. + | +.|||-.++. ++.
T Consensus 81 e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~~~l---~~~~i~lD~v~~------------l--G-~FvEIE~~~~~~~~ 142 (174)
T TIGR00318 81 EFKIEDIENALQILKKLGFKKVYEVIKKRRIYQT---NELNVSIDDVEG------------L--G-FFLEIEKIINNIND 142 (174)
T ss_pred EEEECCHHHHHHHHHHCCCeEEEEEEEEEEEEEE---CCEEEEEEccCC------------C--c-cEEEEEEecCCccc
Confidence 999964 67779999999999999999999995 777777653322 2 5 6679976554 345
Q ss_pred hHHHHHHHHHHHhhhc
Q 027885 168 YTEVASAVSSFCEYLA 183 (217)
Q Consensus 168 ~~~~a~~i~~FaeqL~ 183 (217)
..++-+.+..+|+.|-
T Consensus 143 ~~~~~~~i~~~~~~LG 158 (174)
T TIGR00318 143 KDLALEEIFEIINQLG 158 (174)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 5666677888887763
No 4
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=97.05 E-value=0.083 Score=43.46 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=97.5
Q ss_pred cChHHHHHHhhhhccCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027885 12 QHVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (217)
Q Consensus 12 ~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i 90 (217)
.+.+++..+|+.+.+........+-+.|-++. ........||+|+.-+ ...|.+-|=|.... |. .-.|...
T Consensus 9 ~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~--~~~~~lT~K~~~~~--~~----~~~~~E~ 80 (169)
T cd07890 9 DDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGD--SGKTLLTYKGPKLD--GG----PKVREEI 80 (169)
T ss_pred CCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCC--CCcEEEEEECCCCC--CC----ccceEEE
Confidence 35788889998876665455566666675431 1123467899998732 24577777665432 21 2278888
Q ss_pred Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCCh
Q 027885 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENY 168 (217)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~ 168 (217)
++.+.+ .+..-|+.|||+.-+.+-+.=..|.+ +...|++-.+.. .| +.+||-+...+ .
T Consensus 81 e~~v~~~~~~~~iL~~lg~~~~~~~~K~R~~~~~---~~~~v~lD~~~~--------------lG-~f~EiE~~~~~--~ 140 (169)
T cd07890 81 ETEVADPEAMKEILERLGFGPVGRVKKEREIYLL---GQTRVHLDRVEG--------------LG-DFVEIEVVLED--I 140 (169)
T ss_pred EEecCCHHHHHHHHHHcCCceeEEEEEEEEEEEE---CCEEEEEEccCC--------------CC-ceEEEEEEeCC--c
Confidence 888854 66668999999999999998889986 567777766543 34 57888544333 3
Q ss_pred HHHHHHHHHHHhhhc
Q 027885 169 TEVASAVSSFCEYLA 183 (217)
Q Consensus 169 ~~~a~~i~~FaeqL~ 183 (217)
.++.+.+..++++|-
T Consensus 141 ~~~~~~l~~~~~~lg 155 (169)
T cd07890 141 EEAEEGLGEAAELLG 155 (169)
T ss_pred HHHHHHHHHHHHHcC
Confidence 457788888888763
No 5
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.96 Score=38.95 Aligned_cols=143 Identities=14% Similarity=0.219 Sum_probs=99.0
Q ss_pred ChHHHHHHhhhhccCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE
Q 027885 13 HVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE 91 (217)
Q Consensus 13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id 91 (217)
+.+.+..||+.+-......-.++.+-|..+- +--..+=-+|+|+..+ ..-.+-|-|.=.- .. .=.|.-++
T Consensus 12 d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~---~~~~lTYKgp~ld---~~---~k~r~E~E 82 (178)
T COG1437 12 DLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRING---GEVFLTYKGPKLD---RE---SKTREEIE 82 (178)
T ss_pred CHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecC---CcEEEEEeccccc---cc---ccceeeEE
Confidence 6789999999887665555566677776531 1123467789884422 3445556554331 21 14799999
Q ss_pred eeee--ccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEE--EcCCCCCC
Q 027885 92 SKVS--KNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEV--TAPASSEN 167 (217)
Q Consensus 92 ~~~S--~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEv--Sap~~~e~ 167 (217)
+.++ +++.+.|+.|||+.-....+.=-.|+ .|.+.|++-.|..+ | -.||| ..+. ++.
T Consensus 83 ~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~---~~~~~i~lD~VegL--------------G-~F~EIE~~~~d-~~e 143 (178)
T COG1437 83 IEVSDVEKALEILKRLGFKEVAVVKKTREIYK---VGNVTIELDAVEGL--------------G-DFLEIEVMVDD-ENE 143 (178)
T ss_pred EEeCCHHHHHHHHHHcCCceeeEEEEEEEEEe---eCCEEEEEecccCC--------------c-ccEEEEEecCC-chh
Confidence 9999 49999999999999999999999999 58899888777664 1 35666 3444 333
Q ss_pred hHHHHHHHHHHHhhhc
Q 027885 168 YTEVASAVSSFCEYLA 183 (217)
Q Consensus 168 ~~~~a~~i~~FaeqL~ 183 (217)
++.+-+.+..|+.+|-
T Consensus 144 ~~~~~~~~~~i~~~lG 159 (178)
T COG1437 144 IDGAKEEIEEIARQLG 159 (178)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4455567888888874
No 6
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=94.80 E-value=1.8 Score=35.25 Aligned_cols=143 Identities=16% Similarity=0.283 Sum_probs=85.5
Q ss_pred cChHHHHHHhhhhccCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027885 12 QHVEALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (217)
Q Consensus 12 ~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i 90 (217)
...+.|..+|..+........+.+.+-|-++.. .......||+|..- +..|.+-|=+....| . |..+
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~---~~~~~lTlK~~~~~~--~-------~~e~ 80 (185)
T PF01928_consen 13 SDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRREN---GDGWYLTLKGPGSDG--P-------REEI 80 (185)
T ss_dssp HHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEET---TTEEEEEEEEESSSS--S-------EEEE
T ss_pred HHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeec---CCccEEEEEccCccC--c-------cccc
Confidence 345566555666655544555555666654321 11235899999541 234555554544321 1 5555
Q ss_pred Eeeee-----------ccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEE
Q 027885 91 ESKVS-----------KNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEV 159 (217)
Q Consensus 91 d~~~S-----------~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEv 159 (217)
+..++ +++.+++..+||..-.++-+.-..|++ +| +.|.+..+.-. . -+-+||
T Consensus 81 ~~~~~r~e~e~~i~~~~~~~~~l~~l~l~~~~~~~k~R~~~~~--~~-~~v~lD~~~~~-------------~-~~~~Ei 143 (185)
T PF01928_consen 81 EFEVSREEYEAPISDAEEMREILEALGLRPVARIEKKRRSYRL--EG-VEVELDEVDGL-------------P-GTFLEI 143 (185)
T ss_dssp EEEESHHCCEEEHSHHHHHHHHHHHTTCEEEEEEEEEEEEEEE--TT-EEEEEEEETTT-------------T-EEEEEE
T ss_pred ceeecchhhhccccchHHHHHHHHHhcCceeEEEEEEEEEEEE--CC-EEEEEEEEecc-------------e-EEEEEE
Confidence 55554 378999999999999999999999998 44 77666655432 3 378888
Q ss_pred EcCCC-CCChHHHHHHHHHHHhhhc
Q 027885 160 TAPAS-SENYTEVASAVSSFCEYLA 183 (217)
Q Consensus 160 Sap~~-~e~~~~~a~~i~~FaeqL~ 183 (217)
=+.++ .+...++.+.|..+...|.
T Consensus 144 E~~~~~~~~~~~~~~~i~~~~~~l~ 168 (185)
T PF01928_consen 144 EIESEDEEDLKEAAEEILALLNELG 168 (185)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCHhHHHHHHHHHHHHhhhcC
Confidence 54333 2233344555555555554
No 7
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=94.61 E-value=2.5 Score=36.15 Aligned_cols=145 Identities=10% Similarity=0.079 Sum_probs=86.7
Q ss_pred HHHHHHhhhhcc--CCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE
Q 027885 15 EALEILLQGICG--VHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE 91 (217)
Q Consensus 15 ~~L~~RL~GLcd--~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id 91 (217)
+.+..+|+.+-. ....+...+.+.|-++. ........||+|.. .|+++|-+.-.. .-.--...|+.+.
T Consensus 11 ~~~~~~L~~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~------~~~lk~~~~~~~---~~~~~~~~~~E~~ 81 (196)
T cd07758 11 PSAEERLRKLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG------QWELKIPPGGDP---PTAGANTRYEELT 81 (196)
T ss_pred HHHHHHHHhccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC------eEEEEecCCCCC---CCCCCcceEEecc
Confidence 455566654432 32344566666775431 12345789999964 799999432110 0011235666655
Q ss_pred eee----------------eccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCcee
Q 027885 92 SKV----------------SKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQ 155 (217)
Q Consensus 92 ~~~----------------S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~ 155 (217)
... .+.+.+.+..|||+.--+|-+.=..|++ ++.+.|++-.+. .| . . -+
T Consensus 82 ~~~~~~~~v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~--~~g~~v~LD~~~----~G-~-------~-~~ 146 (196)
T cd07758 82 GEAAIAAALRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKL--DGAFRVDLDRTD----FG-Y-------S-VG 146 (196)
T ss_pred cHHHHHHHHHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEc--CCCcEEEEeccc----CC-c-------c-eE
Confidence 433 1235689999999999999998888886 546777776554 11 1 0 12
Q ss_pred EEEEEcCC--CCCChHHHHHHHHHHHhhhc
Q 027885 156 LVEVTAPA--SSENYTEVASAVSSFCEYLA 183 (217)
Q Consensus 156 LVEvSap~--~~e~~~~~a~~i~~FaeqL~ 183 (217)
=||+-+.. .++....+-+.|..|+++|.
T Consensus 147 EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg 176 (196)
T cd07758 147 EVELLVEEEDNEAEVPAALAKIDELISALM 176 (196)
T ss_pred EEEEEEecccchhhHHHHHHHHHHHHHHhC
Confidence 33333333 23455677888999999885
No 8
>PLN02318 phosphoribulokinase/uridine kinase
Probab=86.90 E-value=26 Score=35.87 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=68.7
Q ss_pred EEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEeeeeccHHHHHHHhCceeeEE
Q 027885 34 VHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHE 112 (217)
Q Consensus 34 ~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~~~S~~v~~Fl~~LGfr~d~E 112 (217)
.++|-|.-+. ..+...-+||+|.. +-+..|-|- .|-. | -|-++++-++..++=.+..-|.+|||+..-.
T Consensus 279 ~~DiYl~~P~~d~~~~~e~LRvR~~----~Gk~~Ltyk-e~i~---d--gp~ii~pk~~fEv~v~~~~gL~aLGy~~~a~ 348 (656)
T PLN02318 279 TYDIYLLPPGEDPETCQSYLRMRNR----DGKYSLMFE-EWVT---D--EPFIISPRITFEVSVRLLGGLMALGYTIATI 348 (656)
T ss_pred eeEEEecCCCCCchhccceEEEEec----CCEEEEEEe-cccc---c--CCeecCcceeEEEeeehHhHHHHcCCceEEE
Confidence 4566675331 12345788999976 557888883 4432 3 3455666777777777888999999999999
Q ss_pred EEEEeeEEEEeeCceEEEEEEEEeee
Q 027885 113 LLRVGFAFHFQRGAQITVTVSSVNKM 138 (217)
Q Consensus 113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~ 138 (217)
+=+.=..|+ .|.+.|.+-.|..+
T Consensus 349 vkk~r~iy~---~g~v~i~lD~ve~L 371 (656)
T PLN02318 349 LKRSSHVFS---DDKVCVKIDWLEQL 371 (656)
T ss_pred EEEEEEEEe---cCCEEEEeehhhcc
Confidence 999999999 79999998888776
No 9
>PF10980 DUF2787: Protein of unknown function (DUF2787); InterPro: IPR021248 This bacterial family of proteins has no known function. ; PDB: 2W56_A 2V1L_A.
Probab=83.11 E-value=3.6 Score=33.58 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.2
Q ss_pred CCCCeEEEEeeeCCCCCCceEEEEe
Q 027885 46 GNVASEVRLLCDLEQPEPTWTVKHL 70 (217)
Q Consensus 46 g~~~~~lRlrr~L~~p~~~W~lry~ 70 (217)
|=-|||+||.| ..+.+|+++||
T Consensus 39 GfHPVEIrl~r---~~~~~W~i~yI 60 (128)
T PF10980_consen 39 GFHPVEIRLER---SSSDQWQIVYI 60 (128)
T ss_dssp -S--EEEEEEE----TTS-EEEEEE
T ss_pred CcCCEEEEEEE---cCCCCEEEEEE
Confidence 56799999999 34678999954
No 10
>PRK14644 hypothetical protein; Provisional
Probab=52.66 E-value=29 Score=28.36 Aligned_cols=66 Identities=12% Similarity=0.286 Sum_probs=40.9
Q ss_pred HHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC-------------CCCcCCCceeEEEEEcCCCCC
Q 027885 101 LFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD-------------EAVPVTPGIQLVEVTAPASSE 166 (217)
Q Consensus 101 Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d-------------~~~~~~~~s~LVEvSap~~~e 166 (217)
-++++||.+ |-||.++|-.+. +.|.+.+. ..| +.....++.|.-|||.|--+.
T Consensus 7 ~~~~~g~el~dve~~~~~~~~~------LrV~Idk~-------~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 73 (136)
T PRK14644 7 LLEKFGNKINEIKIVKEDGDLF------LEVILNSR-------DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDM 73 (136)
T ss_pred hHHhcCCEEEEEEEEeCCCCEE------EEEEECCC-------CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCC
Confidence 578899998 889988876555 33444321 233 222344678999999997666
Q ss_pred ChHHHHHHHHHHHhh
Q 027885 167 NYTEVASAVSSFCEY 181 (217)
Q Consensus 167 ~~~~~a~~i~~Faeq 181 (217)
-+-. . +...|..+
T Consensus 74 pL~~-~-~f~r~~G~ 86 (136)
T PRK14644 74 DYET-D-ELENHIGE 86 (136)
T ss_pred CCCH-H-HHHHhCCC
Confidence 5533 2 45555444
No 11
>PHA00432 internal virion protein A
Probab=50.88 E-value=11 Score=31.26 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=23.9
Q ss_pred cHHHHHHHhCceeeEEEEEEeeEEEE
Q 027885 97 NALRLFNALGYKLDHELLRVGFAFHF 122 (217)
Q Consensus 97 ~v~~Fl~~LGfr~d~E~~~~G~~f~~ 122 (217)
...+||+.|||+++=||...|+.|+-
T Consensus 106 ~hir~Lk~lGf~f~~e~~~~g~~F~~ 131 (137)
T PHA00432 106 SHIRFLKSIGAVFHNEFTGDGCQFQL 131 (137)
T ss_pred HHHHHHHHcCeeeecccccCCceeEE
Confidence 67889999999999999999999983
No 12
>PRK14639 hypothetical protein; Provisional
Probab=43.84 E-value=1e+02 Score=25.14 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC----------------CCCcCCCceeEEEEE
Q 027885 98 ALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD----------------EAVPVTPGIQLVEVT 160 (217)
Q Consensus 98 v~~Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d----------------~~~~~~~~s~LVEvS 160 (217)
....++++||.+ |-||...|-.+. ++|.+-+ ++.++ ...|+ ++.|..|||
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~------lrV~Id~------~~gv~iddC~~vSr~is~~LD~~d~i-~~~Y~LEVS 69 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKI------YRVYITK------EGGVNLDDCERLSELLSPIFDVEPPV-SGEYFLEVS 69 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcE------EEEEEeC------CCCCCHHHHHHHHHHHHHHhcccccc-CCCeEEEEe
Confidence 456788899876 556666654433 3444432 22232 33444 668999999
Q ss_pred cCCCCCChHHHHHHHHHHHhh
Q 027885 161 APASSENYTEVASAVSSFCEY 181 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~Faeq 181 (217)
.|--+--+-. ..+.+.|...
T Consensus 70 SPGl~RpL~~-~~~f~r~~G~ 89 (140)
T PRK14639 70 SPGLERKLSK-IEHFAKSIGE 89 (140)
T ss_pred CCCCCCcCCC-HHHHHHhCCC
Confidence 9975554422 3445555444
No 13
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=43.46 E-value=28 Score=25.82 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=11.8
Q ss_pred ccHHHHHHHhCceeeE
Q 027885 96 KNALRLFNALGYKLDH 111 (217)
Q Consensus 96 ~~v~~Fl~~LGfr~d~ 111 (217)
.++..-|+.||||..-
T Consensus 10 ~~l~~eL~~LgYR~v~ 25 (85)
T PF14814_consen 10 AQLEQELELLGYRKVS 25 (85)
T ss_dssp HHHHHHHHHTT-EE-S
T ss_pred HHHHHHHHHcCCCcCC
Confidence 3788899999999983
No 14
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=41.71 E-value=24 Score=27.83 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=33.9
Q ss_pred EEcCCCCCChHHHHHHHHHHHhhhccceeeecCCcccCcccchhHHHHHHhh
Q 027885 159 VTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMS 210 (217)
Q Consensus 159 vSap~~~e~~~~~a~~i~~FaeqL~Plv~L~K~~~~~~~~~t~~~~a~~~~~ 210 (217)
+|.|+.+|.+....+.++.+.|. |+| .-|+.-|++++++.+..
T Consensus 7 ~s~~~~~ed~~~~ekl~rk~ken--P~V-------PlG~l~t~aal~~g~y~ 49 (100)
T KOG4431|consen 7 LSLPSYEEDMSQKEKLLRKAKEN--PLV-------PLGCLGTTAALTAGLYK 49 (100)
T ss_pred CCCCCCcchhhHHHHHHHHHHhC--CCe-------eehHHHHHHHHHHHhhh
Confidence 37888888887777888888774 776 44999999999888764
No 15
>PRK14643 hypothetical protein; Provisional
Probab=41.01 E-value=76 Score=26.74 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=43.0
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCCcCCCceeEEEEE
Q 027885 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVT 160 (217)
Q Consensus 97 ~v~~Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~~~~~s~LVEvS 160 (217)
-+...++++||.+ |-||.++|-.+. +.|.+-+.. .+.|.++ +.+...++.|.-|||
T Consensus 14 l~~p~~~~~G~eL~die~~~~~~~~~------lrV~Id~~~--~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVS 85 (164)
T PRK14643 14 LVNKELEVLNLKVYEINNLKEFENDM------IQILVEDIL--QANKPLDFDILIKANDLVSNKIDQFIKTSEKYLLEIS 85 (164)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCcE------EEEEEecCC--CcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEec
Confidence 4455788999986 567887776554 233332110 0112122 223345778999999
Q ss_pred cCCCCCChHHHHHHHHHHHhh
Q 027885 161 APASSENYTEVASAVSSFCEY 181 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~Faeq 181 (217)
.|--+--.-. .++...|..+
T Consensus 86 SPGleRpL~~-~~df~r~~G~ 105 (164)
T PRK14643 86 SSGIEKQIRS-QEELVKALNQ 105 (164)
T ss_pred CCCCCCCCCC-HHHHHHhcCC
Confidence 9975555422 4455555554
No 16
>PRK14647 hypothetical protein; Provisional
Probab=37.40 E-value=1.5e+02 Score=24.59 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=40.2
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCCcCCCceeEEEEE
Q 027885 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVT 160 (217)
Q Consensus 97 ~v~~Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~~~~~s~LVEvS 160 (217)
-+...+.++||.+ |-||...|-.+. ++|.+-+ ++.++ +.+...++.|..|||
T Consensus 13 ~i~~~~~~~G~~L~dv~~~~~~~~~~------lrV~ID~------~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVS 80 (159)
T PRK14647 13 LAEQVLSSLGLELVELEYKREGREMV------LRLFIDK------EGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVS 80 (159)
T ss_pred HHHHHHHHCCCEEEEEEEEecCCCeE------EEEEEeC------CCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEc
Confidence 4456788999876 456665554322 4444432 22222 222234678999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhh
Q 027885 161 APASSENYTEVASAVSSFCEYL 182 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~FaeqL 182 (217)
.|--+.-.- -....+.|..+.
T Consensus 81 SPG~~RpL~-~~~~f~r~~G~~ 101 (159)
T PRK14647 81 SPGLDRPLK-KEADYERYAGRL 101 (159)
T ss_pred CCCCCCcCC-CHHHHHHhCCcE
Confidence 997555442 234445554443
No 17
>COG4293 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.30 E-value=48 Score=28.44 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=37.1
Q ss_pred eCceEEEEEEEEeeecccCCCC---------CCCcCCCceeEEEEEcCCCCCC-hHHHHHHHHHHHh
Q 027885 124 RGAQITVTVSSVNKMLKLHATD---------EAVPVTPGIQLVEVTAPASSEN-YTEVASAVSSFCE 180 (217)
Q Consensus 124 ~~g~ikI~Vs~v~k~~~~g~~d---------~~~~~~~~s~LVEvSap~~~e~-~~~~a~~i~~Fae 180 (217)
.+.++.|.|-++.++.++-... ++.+++| .=+.+++|.-+|. +.+++.++|..++
T Consensus 119 p~~~~~vLvlr~~pL~ep~~l~~~aeygGC~SWv~ltp--v~~~~~aPv~sdadl~~~aaevrr~~~ 183 (184)
T COG4293 119 PKHPLAVLVLRAIPLAEPVRLARRAEYGGCTSWVQLTP--VTPTLAAPVHSDADLAEVAAEVRREAV 183 (184)
T ss_pred CCCceEEEEEEecccCCCccccchhhhCCceeeeeccc--cccccCCcccchhHHHHHHHHHHHHhc
Confidence 3899999999999998886664 2333332 2233468865444 6788888876553
No 18
>TIGR02914 EpsI_fam EpsI family protein. In Methylobacillus sp strain 12S, EpsI is encoded immediately downstream of the multiple-membrane-spanning putative transporter EpsH, and is predicted to be a periplasmic protein involved in, but not required for, expression of the exopolysaccharide methanolan. In a number of other species, protein homologous to EpsI is encoded either next to EpsH or, more often, combined in a fused gene. We have proposed renaming EpsH, or the EpsHI fusion protein, to exosortase, based on its phylogenetic association with the PEP-CTERM proposed protein targeting signal.
Probab=34.19 E-value=57 Score=26.86 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=29.3
Q ss_pred CCceeEEEEEcCCCCCChHHHHHHHHHHHhhhccce
Q 027885 151 TPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLL 186 (217)
Q Consensus 151 ~~~s~LVEvSap~~~e~~~~~a~~i~~FaeqL~Plv 186 (217)
.++..||=||+|..++.+.++.+.++.|...+.|.+
T Consensus 135 ~~dgalvrvst~~~~~~~~~a~~~l~~f~~~~~p~~ 170 (174)
T TIGR02914 135 RPDGALVRVSTPVADSSPEAARAVLRDFLRAMAPVL 170 (174)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHHHHhhhhh
Confidence 466799999988855466677888999999999976
No 19
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=33.28 E-value=89 Score=27.96 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=34.6
Q ss_pred cCCC-CCChHHHHHHHHHHHhhhc---c--ceeee-cCCcccCcccchhHHHHHHh
Q 027885 161 APAS-SENYTEVASAVSSFCEYLA---P--LLHLS-KPGVSTGVVPTAAAAAVSLM 209 (217)
Q Consensus 161 ap~~-~e~~~~~a~~i~~FaeqL~---P--lv~L~-K~~~~~~~~~t~~~~a~~~~ 209 (217)
.|.+ ++|. +-++++.|.+++. | -++++ .+....|+=|+||.++|.++
T Consensus 54 ~p~~~~~Nl--v~~a~~~~~~~~g~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~ 107 (302)
T TIGR00191 54 IPTEPTDNL--IYQVAKRFLDQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALA 107 (302)
T ss_pred CCCCccccc--HHHHHHHHHHHcCCCCCCEEEEEEcCCCCcCCCChHHHHHHHHHH
Confidence 4666 5776 6778888888774 3 25554 48999999999998888764
No 20
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.44 E-value=58 Score=22.52 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=21.5
Q ss_pred eEEeeee-ccHHHHHHHhCceeeEEEEEEeeEEE
Q 027885 89 MVESKVS-KNALRLFNALGYKLDHELLRVGFAFH 121 (217)
Q Consensus 89 ~id~~~S-~~v~~Fl~~LGfr~d~E~~~~G~~f~ 121 (217)
.+|..++ .|+..|+++.||+.+.+- .+..|+
T Consensus 31 ~~d~~~s~~~i~~~~~~~G~~~~~~~--~~~~~~ 62 (67)
T cd03421 31 LVDNEVAKENVSRFAESRGYEVSVEE--KGGEFE 62 (67)
T ss_pred EEcChhHHHHHHHHHHHcCCEEEEEe--cCCEEE
Confidence 4555555 599999999999995443 333565
No 21
>PRK01212 homoserine kinase; Provisional
Probab=29.67 E-value=1e+02 Score=27.29 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=34.0
Q ss_pred cCCC-CCChHHHHHHHHHHHhhhc--c--ceeeec-CCcccCcccchhHHHHHHh
Q 027885 161 APAS-SENYTEVASAVSSFCEYLA--P--LLHLSK-PGVSTGVVPTAAAAAVSLM 209 (217)
Q Consensus 161 ap~~-~e~~~~~a~~i~~FaeqL~--P--lv~L~K-~~~~~~~~~t~~~~a~~~~ 209 (217)
.|.+ ++|. +.++++.|.++.. | -|+++| +....|+=+++|.|||.+.
T Consensus 56 ~p~~~~~Nl--i~~a~~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~ 108 (301)
T PRK01212 56 LPLDPEKNL--VYQAALKFLEKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLV 108 (301)
T ss_pred CCCCCcccc--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHH
Confidence 3554 4675 6777788877653 3 256655 9999999999998888774
No 22
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=28.47 E-value=19 Score=25.43 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=15.8
Q ss_pred CcccCcccchhHHHHHHhh
Q 027885 192 GVSTGVVPTAAAAAVSLMS 210 (217)
Q Consensus 192 ~~~~~~~~t~~~~a~~~~~ 210 (217)
++-+|++.|++++|+++++
T Consensus 7 G~l~G~~~t~aa~a~av~~ 25 (54)
T PF11240_consen 7 GFLTGVAATLAAIAGAVFT 25 (54)
T ss_pred hHHHhHHHHHHHHHHHHHH
Confidence 4557899999999999875
No 23
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=28.12 E-value=1.6e+02 Score=19.86 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred ccHHHHHHH-hCceeeEEEEEEeeEEEEeeCceEEEEEEEE
Q 027885 96 KNALRLFNA-LGYKLDHELLRVGFAFHFQRGAQITVTVSSV 135 (217)
Q Consensus 96 ~~v~~Fl~~-LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v 135 (217)
+...+|+.+ ||++...+....+..+.+.+.+...|.+...
T Consensus 10 ~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 50 (112)
T cd06587 10 EAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEG 50 (112)
T ss_pred HHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecC
Confidence 367889998 9999988875222222222245555555544
No 24
>PF08608 Wyosine_form: Wyosine base formation; InterPro: IPR013917 The proteins in this entry appear to be important in wyosine base formation in a subset of phenylalanine specific tRNAs. It has been proposed that it participates in converting tRNA(Phe)-m(1)G(37) to tRNA(Phe)-yW []. ; PDB: 2YX0_A 2Z2U_A.
Probab=28.08 E-value=64 Score=23.02 Aligned_cols=32 Identities=38% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEEEcCC--C-------CCChHHHHHHHHHHHhhhcccee
Q 027885 155 QLVEVTAPA--S-------SENYTEVASAVSSFCEYLAPLLH 187 (217)
Q Consensus 155 ~LVEvSap~--~-------~e~~~~~a~~i~~FaeqL~Plv~ 187 (217)
..|||-++. | -+|+ +..+++.+||+.|.-+..
T Consensus 5 ~fVEvKa~~~~G~s~~rLt~~nm-p~h~eV~~F~~~l~~~~~ 45 (62)
T PF08608_consen 5 DFVEVKAYMHVGYSRNRLTMGNM-PWHEEVLDFAEELAELLG 45 (62)
T ss_dssp SEEEEEE------------GGGS---HHHHHHHHHHHHTTST
T ss_pred cEEEEecCcccccccCccccCCC-CcHHHHHHHHHHHHhhcC
Confidence 478887766 4 2455 668899999999876543
No 25
>PRK14640 hypothetical protein; Provisional
Probab=27.91 E-value=2.6e+02 Score=23.06 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=40.1
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC---------------CCCcCCCceeEEEEE
Q 027885 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD---------------EAVPVTPGIQLVEVT 160 (217)
Q Consensus 97 ~v~~Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d---------------~~~~~~~~s~LVEvS 160 (217)
-+...++++||.+ |-||...|-.+ .++|.+-+ ++.++ +.+...++.|.-|||
T Consensus 11 li~p~~~~~G~el~dve~~~~~~~~------~lrV~ID~------~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVS 78 (152)
T PRK14640 11 LLEAPVVALGFELWGIEFIRAGKHS------TLRVYIDG------ENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVS 78 (152)
T ss_pred HHHHHHHhcCCEEEEEEEEecCCCc------EEEEEEEC------CCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEe
Confidence 3455788999985 44555555432 24555532 11122 222334678999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhh
Q 027885 161 APASSENYTEVASAVSSFCEYL 182 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~FaeqL 182 (217)
.|--+.-.-. ..+.+.|.-.+
T Consensus 79 SPGl~RpL~~-~~~f~r~~G~~ 99 (152)
T PRK14640 79 SPGLDRPLFK-VAQFEKYVGQE 99 (152)
T ss_pred CCCCCCcCCC-HHHHHHhCCCe
Confidence 9975554422 34445554443
No 26
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=27.15 E-value=35 Score=27.71 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=13.0
Q ss_pred cChHHHHHHhh-hhccC
Q 027885 12 QHVEALEILLQ-GICGV 27 (217)
Q Consensus 12 ~~~~~L~~RL~-GLcd~ 27 (217)
..+..|++||| ||||-
T Consensus 56 e~i~~LE~RLRaGlCDR 72 (120)
T PF10482_consen 56 ENIKVLENRLRAGLCDR 72 (120)
T ss_pred HHHHHHHHHHhcccchH
Confidence 35678999997 89997
No 27
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=25.04 E-value=83 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=28.0
Q ss_pred eccH-HHHHHHhCce---eeEEEEEEeeEEEEeeCceEEEEEEEE
Q 027885 95 SKNA-LRLFNALGYK---LDHELLRVGFAFHFQRGAQITVTVSSV 135 (217)
Q Consensus 95 S~~v-~~Fl~~LGfr---~d~E~~~~G~~f~~~~~g~ikI~Vs~v 135 (217)
..++ .+|++..|++ .-||++.+||.|.+ .|.+ |||.+-
T Consensus 232 g~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~--~~~~-~TvfSa 273 (316)
T cd07417 232 GPDVTKRFLEENNLEYIIRSHEVKDEGYEVEH--DGKC-ITVFSA 273 (316)
T ss_pred CHHHHHHHHHHcCCcEEEECCcccceeEEEec--CCeE-EEEeCC
Confidence 3344 5799999998 68999999999986 5543 555443
No 28
>PRK14646 hypothetical protein; Provisional
Probab=24.21 E-value=3.4e+02 Score=22.47 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=42.9
Q ss_pred cHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCC--CC-------------CCCcCCCceeEEEEE
Q 027885 97 NALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHA--TD-------------EAVPVTPGIQLVEVT 160 (217)
Q Consensus 97 ~v~~Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~--~d-------------~~~~~~~~s~LVEvS 160 (217)
-+...++++||.+ |-||.+.|-.+. +.|.+-+- ..+. .| +.+...+++|.-|||
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~------LrV~IDk~----~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVS 81 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIV------IKIIIKKT----NGDDISLDDCALFNTPASEEIENSNLLNCSYVLEIS 81 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeE------EEEEEECC----CCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEc
Confidence 4456788999975 667777765554 23333210 0011 11 233344678999999
Q ss_pred cCCCCCChHHHHHHHHHHHhhhc
Q 027885 161 APASSENYTEVASAVSSFCEYLA 183 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~FaeqL~ 183 (217)
.|--+.-.-. .++...|.-+.-
T Consensus 82 SPGldRpL~~-~~df~r~~G~~v 103 (155)
T PRK14646 82 SQGVSDELTS-ERDFKTFKGFPV 103 (155)
T ss_pred CCCCCCcCCC-HHHHHHhCCCEE
Confidence 9975555422 445556655554
No 29
>PF08527 PAD_M: Protein-arginine deiminase (PAD) middle domain; InterPro: IPR013733 This entry represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold. ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0018101 peptidyl-citrulline biosynthetic process from peptidyl-arginine, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=22.93 E-value=3e+02 Score=23.45 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=37.6
Q ss_pred cceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEeeeeccHHHHHHHhCceee
Q 027885 31 RLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLD 110 (217)
Q Consensus 31 ~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~~~S~~v~~Fl~~LGfr~d 110 (217)
-|..|.+++-..+. ..--+|+=+... +...|..+++.+|+. .|..+ .-+|-..+
T Consensus 79 l~~~~~LvLhvs~~---da~kvrVF~~~~-~~~~~~y~~VLGp~~------------------~sy~v----~~~~g~~e 132 (159)
T PF08527_consen 79 LFKGYKLVLHVSKS---DAEKVRVFHAQG-GNSSSRYKHVLGPQK------------------LSYEV----PRLGGDRE 132 (159)
T ss_dssp GGGSEEEEEEE-TT---TGGGEEEEEE---------EEEEECTTB------------------SEEEE-------SEEEE
T ss_pred hhcccEEEEEeCHH---HhccceeEeccC-CCCCccCeEEeCCCc------------------ccEEe----ccCCCcce
Confidence 34555555533221 122344444422 235688888888863 11111 12355778
Q ss_pred EEEEEEeeEEE---EeeCceEEEEEEEE
Q 027885 111 HELLRVGFAFH---FQRGAQITVTVSSV 135 (217)
Q Consensus 111 ~E~~~~G~~f~---~~~~g~ikI~Vs~v 135 (217)
..|+.+|..|- | .|-|.|.||=+
T Consensus 133 ~~FyVEgL~FPDa~F--sGLIS~~vSLl 158 (159)
T PF08527_consen 133 ITFYVEGLEFPDADF--SGLISISVSLL 158 (159)
T ss_dssp EEEEEEESS--BTTB---SEEEEEEEEE
T ss_pred EEEEEEEcccCCCCC--CeeEEEEEEec
Confidence 88999999998 6 78898888743
No 30
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=22.81 E-value=1.5e+02 Score=27.59 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred cCCCCCChHHHHHHHHHHHhhhcc-c---eeee-cCCcccCcccchhHHHHHHhh
Q 027885 161 APASSENYTEVASAVSSFCEYLAP-L---LHLS-KPGVSTGVVPTAAAAAVSLMS 210 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~FaeqL~P-l---v~L~-K~~~~~~~~~t~~~~a~~~~~ 210 (217)
.|.+++|+ +-..+..|++.+.. . ++++ .+..+-|+=|+||+++|.++.
T Consensus 53 iP~~~~n~--~~~~~~~~~~~~~~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~a 105 (299)
T COG0083 53 IPLDPENL--VYQAALKFLEALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAA 105 (299)
T ss_pred CCCCccee--HHHHHHHHHHHhCCCccEEEEEEcCCCCCCCCcHHHHHHHHHHHH
Confidence 78888886 78899999999943 3 2333 467777888999999998764
No 31
>PTZ00167 RNA polymerase subunit 8c; Provisional
Probab=21.94 E-value=92 Score=26.05 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred eeeEEEEEEeeEEEEee--CceEEEEEE
Q 027885 108 KLDHELLRVGFAFHFQR--GAQITVTVS 133 (217)
Q Consensus 108 r~d~E~~~~G~~f~~~~--~g~ikI~Vs 133 (217)
.-+|||+--|..|+|.. .++++|.+|
T Consensus 82 ad~ydYVM~GkvYk~ee~~s~~~~vy~S 109 (144)
T PTZ00167 82 MDQYEYVMYGKIFKFEEKSSERRTLYAS 109 (144)
T ss_pred cccCCEEcceEEEEeeecCCCcEEEEEE
Confidence 36899999999999943 456666655
No 32
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=4.2e+02 Score=22.21 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=39.7
Q ss_pred ccHHHHHHHhCcee-eEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC----------------CCCcCCCceeEEE
Q 027885 96 KNALRLFNALGYKL-DHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD----------------EAVPVTPGIQLVE 158 (217)
Q Consensus 96 ~~v~~Fl~~LGfr~-d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d----------------~~~~~~~~s~LVE 158 (217)
+-+-..+..|||.+ |-||.+.|-- ..+.|.+-+- |..+ ...|+. +.|.-|
T Consensus 12 ~liep~~~~lG~ELv~ve~~~~~~~------~~lrI~id~~------g~v~lddC~~vSr~is~~LD~edpi~-~~Y~LE 78 (153)
T COG0779 12 ELIEPVVESLGFELVDVEFVKEGRD------SVLRIYIDKE------GGVTLDDCADVSRAISALLDVEDPIE-GAYFLE 78 (153)
T ss_pred HHHHHhHhhcCcEEEEEEEEEcCCC------cEEEEEeCCC------CCCCHHHHHHHHHHHHHHhccCCccc-ccEEEE
Confidence 34455788999986 5566666622 2233333222 2222 244454 679999
Q ss_pred EEcCCCCCChHHHHHHHHHHHhhh
Q 027885 159 VTAPASSENYTEVASAVSSFCEYL 182 (217)
Q Consensus 159 vSap~~~e~~~~~a~~i~~FaeqL 182 (217)
||.|-.+--+- -.++...|..++
T Consensus 79 VSSPGldRpL~-~~~~f~r~~G~~ 101 (153)
T COG0779 79 VSSPGLDRPLK-TAEHFARFIGEK 101 (153)
T ss_pred eeCCCCCCCcC-CHHHHHHhcCcE
Confidence 99997544431 233444444443
No 33
>PF11984 DUF3485: Protein of unknown function (DUF3485); InterPro: IPR014263 This entry contains EpsI from Methylobacillus sp. 12S. EpsI is encoded immediately downstream of the multiple-membrane-spanning putative transporter EpsH, and is predicted to be a periplasmic protein involved in, but not required for, expression of the exopolysaccharide methanolan. In a number of other species, protein homologues to EpsI are encoded either next to epsH or, more often, combined in a fused gene.
Probab=21.09 E-value=1.3e+02 Score=24.88 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=27.8
Q ss_pred CceeEEEEEcCCCCCChHHHHHHHHHHHhhhccce
Q 027885 152 PGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLL 186 (217)
Q Consensus 152 ~~s~LVEvSap~~~e~~~~~a~~i~~FaeqL~Plv 186 (217)
.+..||=||+|- +++.+++...+.+|+.++.|.+
T Consensus 168 ~d~alvrvst~~-~~~~~~a~~~l~~f~~~~~~~l 201 (206)
T PF11984_consen 168 DDGALVRVSTPV-DGDEEQARARLQDFLRDLLPAL 201 (206)
T ss_pred CCcEEEEEEEeC-CCChHHHHHHHHHHHHHHHHhh
Confidence 356899999885 5555688999999999999876
No 34
>PLN02451 homoserine kinase
Probab=21.07 E-value=1.7e+02 Score=27.45 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=34.8
Q ss_pred cCCC-CCChHHHHHHHHHHHhhhc--cc---eeeec-CCcccCcccchhHHHHHHh
Q 027885 161 APAS-SENYTEVASAVSSFCEYLA--PL---LHLSK-PGVSTGVVPTAAAAAVSLM 209 (217)
Q Consensus 161 ap~~-~e~~~~~a~~i~~FaeqL~--Pl---v~L~K-~~~~~~~~~t~~~~a~~~~ 209 (217)
+|.. .+|+ +-++++.|.+++. |. ++++| +....|+=|+||.++|.++
T Consensus 108 l~~~~~~Nl--v~~a~~~~~~~~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~ 161 (370)
T PLN02451 108 LSKDPLRNC--AGIAAIATMKLLGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAV 161 (370)
T ss_pred CCCCcccCc--HHHHHHHHHHHcCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHH
Confidence 3554 3776 6778888888875 31 44544 9999999999999888775
No 35
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=21.00 E-value=3.3e+02 Score=19.69 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=16.8
Q ss_pred EEeeeec--cHHHHHHHhCceeeEE
Q 027885 90 VESKVSK--NALRLFNALGYKLDHE 112 (217)
Q Consensus 90 id~~~S~--~v~~Fl~~LGfr~d~E 112 (217)
|...|++ ...+|++.|||+..++
T Consensus 4 i~l~V~D~~~a~~FY~~LGf~~~~~ 28 (122)
T cd07235 4 VGIVVADMAKSLDFYRRLGFDFPEE 28 (122)
T ss_pred EEEEeccHHHHHHHHHHhCceecCC
Confidence 3445565 7888999999987554
No 36
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=20.69 E-value=37 Score=24.45 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=12.9
Q ss_pred eeec-cHHHHHHHhCce
Q 027885 93 KVSK-NALRLFNALGYK 108 (217)
Q Consensus 93 ~~S~-~v~~Fl~~LGfr 108 (217)
.+|. .+.+|.+.|||.
T Consensus 45 ~vS~sti~Rf~kkLG~~ 61 (77)
T PF01418_consen 45 GVSPSTIVRFCKKLGFS 61 (77)
T ss_dssp TS-HHHHHHHHHHCTTT
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 5666 899999999996
No 37
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.19 E-value=2.2e+02 Score=20.99 Aligned_cols=42 Identities=14% Similarity=0.341 Sum_probs=24.8
Q ss_pred eEEeeeec--cHHHHHHHhCceeeEEEEEE-eeEEEEeeCceEEEEE
Q 027885 89 MVESKVSK--NALRLFNALGYKLDHELLRV-GFAFHFQRGAQITVTV 132 (217)
Q Consensus 89 ~id~~~S~--~v~~Fl~~LGfr~d~E~~~~-G~~f~~~~~g~ikI~V 132 (217)
.+...|++ .+.+|++.|||+...++-.. +..|.. ++...|.+
T Consensus 3 ~v~l~V~Dl~~s~~FY~~lGf~~~~~~~~~~~~~~~~--~~~~~l~l 47 (124)
T cd09012 3 FINLPVKDLEKSTAFYTALGFEFNPQFSDEKAACMVI--SDNIFVML 47 (124)
T ss_pred EEEeecCCHHHHHHHHHHCCCEEccccCCCCeEEEEE--CCceEEEE
Confidence 34455665 78899999999876544332 233332 34444444
No 38
>smart00658 RPOL8c RNA polymerase subunit 8. subunit of RNA polymerase I, II and III
Probab=20.08 E-value=1.3e+02 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.3
Q ss_pred eeEEEEEEeeEEEEee--Cc--eEEEEEE
Q 027885 109 LDHELLRVGFAFHFQR--GA--QITVTVS 133 (217)
Q Consensus 109 ~d~E~~~~G~~f~~~~--~g--~ikI~Vs 133 (217)
-+|||+--|..|+|.. .+ +++|.+|
T Consensus 85 d~ydYVM~GkvYk~e~~~~~~~~~~vy~S 113 (143)
T smart00658 85 DKYEYVMYGKVYRIEEDKTETEKLSVYVS 113 (143)
T ss_pred hcCCEEeeeEEEEEEecCCCceEEEEEEE
Confidence 4899999999999943 23 5555554
No 39
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=20.06 E-value=2.1e+02 Score=25.70 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=35.1
Q ss_pred cCCCCCChHHHHHHHHHHHhhhc---c--ceee-ecCCcccCcccchhHHHHHHh
Q 027885 161 APASSENYTEVASAVSSFCEYLA---P--LLHL-SKPGVSTGVVPTAAAAAVSLM 209 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~FaeqL~---P--lv~L-~K~~~~~~~~~t~~~~a~~~~ 209 (217)
.|.+++|+ +-++++.|++... | -|++ +.+....|+=+++|.|||.|+
T Consensus 65 ip~~~~Nl--v~ka~~~~~~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~ 117 (290)
T PRK14608 65 LGDGDDNL--VLRAARALRARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALR 117 (290)
T ss_pred CCCCCCcH--HHHHHHHHHHHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHH
Confidence 46556786 6788888988763 3 2444 458889999999999988775
Done!