Query 027885
Match_columns 217
No_of_seqs 76 out of 78
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c0t_A Mediator of RNA polymer 100.0 1.7E-49 5.9E-54 339.9 21.2 182 1-192 2-206 (207)
2 2hzm_B RNA polymerase II media 100.0 7.8E-29 2.7E-33 222.8 19.9 185 1-194 2-293 (317)
3 1yem_A Hypothetical protein; s 97.2 0.048 1.7E-06 44.6 17.5 137 13-183 18-156 (179)
4 3ghx_A Adenylate cyclase CYAB; 96.4 0.29 1E-05 39.9 17.7 138 13-182 19-161 (179)
5 3n10_A Adenylate cyclase 2; CY 96.3 0.27 9.2E-06 39.5 15.9 138 13-182 19-161 (179)
6 2een_A Hypothetical protein PH 96.2 0.28 9.6E-06 39.5 15.5 144 14-183 11-161 (183)
7 2aca_A Putative adenylate cycl 95.3 0.51 1.7E-05 38.5 13.5 137 13-182 21-163 (189)
8 2dc4_A PH1012 protein, 165AA l 94.9 1.1 3.6E-05 35.4 17.8 137 13-183 10-148 (165)
9 2w56_A VC0508; unknown functio 54.4 15 0.0005 29.6 4.4 21 46-70 56-77 (147)
10 2v1l_A Hypothetical protein; p 53.1 16 0.00056 29.3 4.5 21 46-70 56-77 (148)
11 1qsm_A HPA2 histone acetyltran 36.7 15 0.00051 25.6 1.7 17 97-113 130-146 (152)
12 4f78_A D,D-dipeptidase/D,D-car 28.8 18 0.00063 31.3 1.2 13 62-74 164-176 (255)
13 1z4e_A Transcriptional regulat 27.2 84 0.0029 22.2 4.5 24 90-113 124-148 (153)
14 1ecs_A Bleomycin resistance pr 26.5 1.3E+02 0.0044 21.0 5.4 24 89-112 6-31 (126)
15 3pyf_A 4-diphosphocytidyl-2-C- 25.7 99 0.0034 26.5 5.4 47 161-209 64-115 (306)
16 3bhd_A Thtpase, thiamine triph 23.9 3E+02 0.01 22.5 12.4 143 17-183 37-202 (234)
17 1ib8_A Conserved protein SP14. 23.5 2.5E+02 0.0085 22.2 7.0 31 151-182 76-106 (164)
18 1a1d_A RNA polymerase; RPB8, O 22.3 77 0.0026 25.4 3.7 25 109-133 91-117 (146)
19 1sei_A Ribosomal protein S8; p 22.2 1.2E+02 0.0041 23.4 4.7 26 90-115 24-52 (130)
20 2dgv_A HnRNP M, heterogeneous 21.7 80 0.0027 21.1 3.3 43 79-121 6-53 (92)
No 1
>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-49 Score=339.92 Aligned_cols=182 Identities=13% Similarity=0.182 Sum_probs=157.0
Q ss_pred CeeEEEEEEeccChHHHHHHhhhhccCCCccceEEeEEEeeCCCC----CCCCeEEEEeeeC---CC------CCCceEE
Q 027885 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNL----GNVASEVRLLCDL---EQ------PEPTWTV 67 (217)
Q Consensus 1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~----g~~~~~lRlrr~L---~~------p~~~W~l 67 (217)
|||+|||+|.+++++.|+|||+||| -.|++|+|||||||..+.. +.+.+.+|+|+.+ ++ ++++|++
T Consensus 2 qE~lL~gsV~~~~~~~ll~~L~GL~-m~P~~~le~~mvfk~~~~P~~~~r~ggsy~rv~~~v~~~~~~d~~~~~~~~W~l 80 (207)
T 3c0t_A 2 QELYLLGVVPSRRFEAVVNSLSKTL-DGPKTILEFWVVYRPKDVPPNLPRQPDSWLRLCSNIESHDETDTEWSKNTQWSM 80 (207)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHS-EEEEEEEEEEEEEEEC------CCCGGGSEEEEEEGGGSCTTCTTGGGSSCEEE
T ss_pred ceEEEEeecchhHHHHHHHHHhhcc-cCCeeeeEEEEEeccCCCCcccCCCCCceEEEEeecccccccccccccCCceEE
Confidence 6999999999999999999999999 5599999999999743200 1112239999999 77 4679999
Q ss_pred EEecccccCCCccCcceeeeeeEE-eeeeccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCC
Q 027885 68 KHLGGAMRGAGAEQISVLVRSMVE-SKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDE 146 (217)
Q Consensus 68 ry~G~pe~g~g~~~~~a~VR~~id-~~~S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~ 146 (217)
||+|+||. ++++||++|++++ ..+|+|+++|+++|||++||||+.+||+|+ +|+|||++++|++ ++.++.
T Consensus 81 r~~g~pEa---~~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~f~---~g~~kI~l~ril~---~~~p~~ 151 (207)
T 3c0t_A 81 YLEGNSEP---KREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYF---FFDTTVRIYQTLI---PSQQRS 151 (207)
T ss_dssp EEECCCCS---SCTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEEEE---ETTEEEEEEEEEE---ESSTTC
T ss_pred EEcCCCcC---CCcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeEEE---eCCEEEEEEeeec---CCCCCc
Confidence 99999996 7889999999999 588999999999999999999999999999 6999999999999 555554
Q ss_pred CC----cC-CCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhccceeeecCC
Q 027885 147 AV----PV-TPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLAPLLHLSKPG 192 (217)
Q Consensus 147 ~~----~~-~~~s~LVEvS--ap~~~e~--~~~~a~~i~~FaeqL~Plv~L~K~~ 192 (217)
.. |+ .++|||||+| +|+++|. +..++++|+.|||||+|+|+|+|+|
T Consensus 152 ~~pp~~pLd~S~sylle~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~Lek~~ 206 (207)
T 3c0t_A 152 IKPPFHPMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNVR 206 (207)
T ss_dssp CSSCEEESSTTCCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCCCBCCC
T ss_pred cCCCccccccCcceEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 44 33 2568999997 9998888 3347999999999999999999998
No 2
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E
Probab=99.96 E-value=7.8e-29 Score=222.84 Aligned_cols=185 Identities=16% Similarity=0.234 Sum_probs=146.2
Q ss_pred CeeEEEEEEeccChHHHHHHhhhhccCCCccceEEeEEEeeCCC--CC--------CCCeEEEEeeeC------------
Q 027885 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPN--LG--------NVASEVRLLCDL------------ 58 (217)
Q Consensus 1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~--~g--------~~~~~lRlrr~L------------ 58 (217)
|+.+|+|+|.+...+.+++-|+.|||+.|..|..+-+|+|-.|. .| ..+.-+|+...+
T Consensus 2 qqLsL~s~I~~~~y~~~i~tl~~ltG~~P~~~~~~~~v~kP~p~~~~~~vn~~nqlvE~~~~k~~~~~p~~~~~~~~~~~ 81 (317)
T 2hzm_B 2 QQLSLFGSIGDDGYDLLISTLTTISGNPPLLYNSLCTVWKPNPSYDVENVNSRNQLVEPNRIKLSKEVPFSYLIDETMMD 81 (317)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHCSCCEEEEEEEEEEEECGGGCCC----------CCCEEEEECCCGGGTCCC----
T ss_pred ceEEEEEecCcccHHHHHHHHHHhcCCCCeeeeeeEEEecCCCCCCccccccccchhhhhheeecccccccccccccccc
Confidence 57899999999999999999999999999999999999964331 12 222333333331
Q ss_pred ---------------------------------------------------CC------------------------CCC
Q 027885 59 ---------------------------------------------------EQ------------------------PEP 63 (217)
Q Consensus 59 ---------------------------------------------------~~------------------------p~~ 63 (217)
+. ..+
T Consensus 82 ~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 161 (317)
T 2hzm_B 82 KPLNFRILKSFTNDKIPLNYAMTRNILHNTVPQVTNFNSTNEDQNNSKHTEDTVNESRNSDDIIDVDMDASPAPSNESCS 161 (317)
T ss_dssp CCCSGGGGGGC-----------------------------------------------------------------CCCC
T ss_pred cccccchhhhhhccccchhHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccCcccccCC
Confidence 00 136
Q ss_pred ceEEEEecccccCCCccCcceeeeeeEEe--eeec----cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEee
Q 027885 64 TWTVKHLGGAMRGAGAEQISVLVRSMVES--KVSK----NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNK 137 (217)
Q Consensus 64 ~W~lry~G~pe~g~g~~~~~a~VR~~id~--~~S~----~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k 137 (217)
+|+|||.|.||. ++++++++|+++++ .+|+ ++++|+++|||+++|||+.+||+|.+ ||.|+|+++||++
T Consensus 162 pW~Lr~~DiPEA---gknr~Vt~R~i~eS~l~~s~~~~~svl~FL~eLGY~fd~EYV~kG~~F~~--kgdI~I~L~KI~~ 236 (317)
T 2hzm_B 162 PWSLQISDIPAA---GNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFM--KHGLILELQKIWQ 236 (317)
T ss_dssp CEEEEEEEC---------CCSEEEEEEEEEEEEEEETTCSHHHHHHHTTEEEEEEEEEEEEEEEC--GGGCEEEEEEEEE
T ss_pred ceEEEecCCCCC---CCCCceEEEEEEeeeeecCCCCcccHHHHHHHcCCceeEEEEEEEEEEEE--cCCEEEEEEEEEe
Confidence 799999999996 47899999999997 4588 99999999999999999999999996 7999999999999
Q ss_pred ecccCCCCCCCcCCCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhccceeeecCCcc
Q 027885 138 MLKLHATDEAVPVTPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLAPLLHLSKPGVS 194 (217)
Q Consensus 138 ~~~~g~~d~~~~~~~~s~LVEvS--ap~~~e~--~~~~a~~i~~FaeqL~Plv~L~K~~~~ 194 (217)
+...+ .+ ...+++||||+| +|.+.|. +..++++|+.|+|||+|+|+|+++|..
T Consensus 237 ~~~~~-~~---~d~SgsylLkasV~V~~~tD~d~i~~as~eL~~LkeqLkglVeLE~pDR~ 293 (317)
T 2hzm_B 237 IEEAG-NS---QITSGGFLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDRQ 293 (317)
T ss_dssp EETTE-EE---ETTTTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTTCCCBCCCHH
T ss_pred eCCCC-CC---CCCCCceEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhhhhcceeccchh
Confidence 97332 21 255779999997 8877666 556899999999999999999999963
No 3
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=97.16 E-value=0.048 Score=44.64 Aligned_cols=137 Identities=12% Similarity=0.168 Sum_probs=95.4
Q ss_pred ChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027885 13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92 (217)
Q Consensus 13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~ 92 (217)
+++++..+|.-+......++...-+-|-++ + ...||+|.. ..+..|.+-|=|.. .| . .-.|.-+++
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p-~----~~~LRIR~~--~~~~~~~lT~K~p~-~g--~----~k~~~E~e~ 83 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVP-R----PKLLRIRGV--HNLKKYYLTFKEIL-DE--N----NEEFYEVEF 83 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCC-T----TEEEEEEEE--TTTTEEEEEEEEEC-SS--S----SCEEEEEEE
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCC-C----CCEEEEEEE--cCCCeEEEEEeccC-CC--C----ccceeEEEE
Confidence 689999999987765445555555556543 1 289999975 22457999988766 32 2 226666666
Q ss_pred eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCChHH
Q 027885 93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE 170 (217)
Q Consensus 93 ~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~~~ 170 (217)
.+++ .+..+|..|||.....+-+.-+.|.+ +...|.+..+.. .| ..|||=.... ..+.
T Consensus 84 ~v~d~~~~~~iL~~LG~~~~~~i~K~R~~~~~---~~~~i~lD~~~~--------------lG-~f~EIE~~~~--~~e~ 143 (179)
T 1yem_A 84 EIGDFEKAVEVFKRLGFKIQATIKKKRWVYKL---NGVTLEVNRVEG--------------IG-DFVDIEVISD--SPEE 143 (179)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEEECS--CHHH
T ss_pred EeCCHHHHHHHHHHCCCcEEEEEEEEEEEEEE---CCEEEEEEecCC--------------CC-CEEEEEEecC--ChHH
Confidence 6665 57778999999999999999999996 567887777532 34 5667743332 3445
Q ss_pred HHHHHHHHHhhhc
Q 027885 171 VASAVSSFCEYLA 183 (217)
Q Consensus 171 ~a~~i~~FaeqL~ 183 (217)
+...+..|+++|-
T Consensus 144 ~~~~~~~ll~~LG 156 (179)
T 1yem_A 144 AKEKIWEVAKMLG 156 (179)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 6778888888874
No 4
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=96.42 E-value=0.29 Score=39.85 Aligned_cols=138 Identities=13% Similarity=0.195 Sum_probs=87.2
Q ss_pred ChHHHHHHhhhhccCC-CccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027885 13 HVEALEILLQGICGVH-RDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (217)
Q Consensus 13 ~~~~L~~RL~GLcd~~-~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i 90 (217)
+.+++.+||..+.... ..+...+-+.|-++.. .-.....||+|+.-+....-|+ |=|... +. +.
T Consensus 19 d~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t--~Kgp~~----~~--------~~ 84 (179)
T 3ghx_A 19 DLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWI--VKGPGA----ER--------CE 84 (179)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEE--EECSSS----SB--------EE
T ss_pred CHHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEE--EecCCC----Cc--------EE
Confidence 6789999998764331 1223444555654321 1234678999987321112355 434432 11 23
Q ss_pred Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCC-CCC
Q 027885 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPAS-SEN 167 (217)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~-~e~ 167 (217)
++.+++ .+...|..|||.....+-+.-..|.+ +..+|++..+-.+ | +.|||=..+. ++.
T Consensus 85 e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~y~~---~~~~i~LD~v~gl--------------G-~f~EIE~~~~d~~~ 146 (179)
T 3ghx_A 85 ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFV---GKFHITVDHLTGL--------------G-DFAEIAIMTDDATE 146 (179)
T ss_dssp EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCGGG
T ss_pred EEEcCCHHHHHHHHHHCCCcEEEEEEEEEEEEEE---CCEEEEEEccCCC--------------c-cEEEEEEEcCChhh
Confidence 555554 77789999999999999999999996 7888888776532 3 5668843322 344
Q ss_pred hHHHHHHHHHHHhhh
Q 027885 168 YTEVASAVSSFCEYL 182 (217)
Q Consensus 168 ~~~~a~~i~~FaeqL 182 (217)
...+.+.+..++++|
T Consensus 147 ~~~~~~~i~~l~~~L 161 (179)
T 3ghx_A 147 LDKLKAECRDFANTF 161 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 556667778888776
No 5
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=96.34 E-value=0.27 Score=39.46 Aligned_cols=138 Identities=12% Similarity=0.142 Sum_probs=89.8
Q ss_pred ChHHHHHHhhhhccCC-CccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027885 13 HVEALEILLQGICGVH-RDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (217)
Q Consensus 13 ~~~~L~~RL~GLcd~~-~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i 90 (217)
+.+++..+|..+.... ....+.+-+.|-++. ........||+|+.-+ +..|++.|=| |. +|...
T Consensus 19 d~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~--~~~~~lt~kg-~~-----------~~~e~ 84 (179)
T 3n10_A 19 DLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNP--SGIRLWIVKG-PG-----------AERCE 84 (179)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEET--TCCEEEEEEC-SS-----------SSBEE
T ss_pred CHHHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCC--CceEEEEEcC-Cc-----------cccce
Confidence 5788889988765432 233344455565432 1234578899987633 3467777743 32 34556
Q ss_pred Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCC-CCCC
Q 027885 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPA-SSEN 167 (217)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~-~~e~ 167 (217)
++.+++ .+..++..+||+.-..+-+.-..|.+ +.+.|++..+.. -| ..+||=... ..+.
T Consensus 85 e~~v~~~~~~~~~l~~lg~~~~~~~~k~R~~~~~---~~~~v~lD~v~~--------------lG-~f~EiE~e~~~~~~ 146 (179)
T 3n10_A 85 ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFV---GKFHITVDHLTG--------------LG-DFAEIAIMTDDATE 146 (179)
T ss_dssp EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEEEESCGGG
T ss_pred eeccCCHHHHHHHHHhCCCeEEEEEEEEEEEEEE---CCEEEEEEeccC--------------CC-cEEEEEEEeCCCcc
Confidence 666664 78889999999999999999999995 678888776532 12 567884322 2334
Q ss_pred hHHHHHHHHHHHhhh
Q 027885 168 YTEVASAVSSFCEYL 182 (217)
Q Consensus 168 ~~~~a~~i~~FaeqL 182 (217)
+..+.+.+..++.+|
T Consensus 147 ~~~~~~~~~~l~~~L 161 (179)
T 3n10_A 147 LDKLKAECRDFANTF 161 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 555667788888876
No 6
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=96.23 E-value=0.28 Score=39.48 Aligned_cols=144 Identities=11% Similarity=0.152 Sum_probs=90.9
Q ss_pred hHHHHHHhhhhccCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027885 14 VEALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92 (217)
Q Consensus 14 ~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~ 92 (217)
.+++.++|.. ......++..+-+-|-++.. .......||+|+.-...+..|.+.|=|....| + .-.|.-+++
T Consensus 11 ~~~~~~~L~~-~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~-~-----~~~r~E~e~ 83 (183)
T 2een_A 11 NDEIFEKVRE-TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDE-K-----SKTRLEIEV 83 (183)
T ss_dssp CHHHHHHHHT-TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCT-T-----SCCEEEEEE
T ss_pred CHHHHHHHHh-cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCC-C-----ceeEEEEEE
Confidence 4567788876 33223444555555654321 11245799999532222457999997754421 1 124777777
Q ss_pred eee-c--cHHHHHHHhCceeeEEEEEEeeEEEEeeCc-eEEEEEEEEeeecccCCCCCCCcCCCceeEEEEE--cCCCCC
Q 027885 93 KVS-K--NALRLFNALGYKLDHELLRVGFAFHFQRGA-QITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSE 166 (217)
Q Consensus 93 ~~S-~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g-~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvS--ap~~~e 166 (217)
.++ + .+...|..|||..-+.+-+.-..|.+ + .+.|.+-.+.. -| ..|||= +.. .+
T Consensus 84 ~v~~~~~~~~~~L~~lgl~~~~~~~k~R~~~~~---~~~~~v~lD~~~~--------------lg-~f~EiE~e~~~-~~ 144 (183)
T 2een_A 84 EIQEDVDKYFELLDRLGFKEVLKVVKTREKYYV---EKGVTITLDEVEG--------------LG-KFIEIETLVKE-KD 144 (183)
T ss_dssp EECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---ETTEEEEEEEETT--------------TE-EEEEEEEECSS-GG
T ss_pred eecCCHHHHHHHHHHCCCeEEEEEEEEEEEEEe---CCCEEEEEEeecC--------------Ce-eEEEEEEecCC-cc
Confidence 776 4 57889999999999999999999997 4 67888777531 13 244874 333 22
Q ss_pred ChHHHHHHHHHHHhhhc
Q 027885 167 NYTEVASAVSSFCEYLA 183 (217)
Q Consensus 167 ~~~~~a~~i~~FaeqL~ 183 (217)
...++-..+..|+++|-
T Consensus 145 ~~~~~~~~~~~l~~~lg 161 (183)
T 2een_A 145 EIPEAVEKLEKILRELG 161 (183)
T ss_dssp GHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 44455667777777764
No 7
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=95.27 E-value=0.51 Score=38.48 Aligned_cols=137 Identities=12% Similarity=0.203 Sum_probs=86.0
Q ss_pred ChHHHHHHhhhhcc-CCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027885 13 HVEALEILLQGICG-VHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV 90 (217)
Q Consensus 13 ~~~~L~~RL~GLcd-~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i 90 (217)
+.+++..+|..+.. ....++...-+-|-++.. .......||+|+.-+.....|+++ |+... . +.
T Consensus 21 d~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~K--gp~~~---~---------~~ 86 (189)
T 2aca_A 21 NHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVK--GPEAD---R---------CE 86 (189)
T ss_dssp CHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEE--CSSTT---B---------EE
T ss_pred CHHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEc--CCCcC---c---------eE
Confidence 57889999998766 223455555666654321 112467899997632112345654 44332 1 11
Q ss_pred Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEE--cCCCCC
Q 027885 91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSE 166 (217)
Q Consensus 91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvS--ap~~~e 166 (217)
++.+.+ .+...|..|||+.-+.+-+.-..|.+ +.+.|++..+..+ | ..+||= +..++
T Consensus 87 e~~v~d~~~~~~~L~~lgl~~~~~~~k~R~~~~~---~~~~v~lD~~~~l--------------g-~f~EiE~e~~~~~- 147 (189)
T 2aca_A 87 ATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFV---GEFHITLDFLDGF--------------G-HFAEFAIMTDDET- 147 (189)
T ss_dssp EEEBSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCSG-
T ss_pred EEecCCHHHHHHHHHHcCCcEEEEEEEEEEEEEE---CCEEEEEEcccCC--------------e-eEEEEEEEcCCcc-
Confidence 333333 67789999999999999999999996 6788888876421 2 456763 43322
Q ss_pred ChHHHHHHHHHHHhhh
Q 027885 167 NYTEVASAVSSFCEYL 182 (217)
Q Consensus 167 ~~~~~a~~i~~FaeqL 182 (217)
....+-+.+..|+++|
T Consensus 148 ~~~~~~~~~~~l~~~l 163 (189)
T 2aca_A 148 ALARYRERLVALAQQF 163 (189)
T ss_dssp GGTTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc
Confidence 2334567888888887
No 8
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=94.93 E-value=1.1 Score=35.37 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=90.7
Q ss_pred ChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027885 13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES 92 (217)
Q Consensus 13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~ 92 (217)
+.+++..+|..+......++..+-.-|-++. ...||+|.. ..+..|.+-|=|.. .| +...|.-.++
T Consensus 10 ~~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~-----~~~LRiR~~--~~~~~~~lT~K~~~-~g------~~~~~~E~e~ 75 (165)
T 2dc4_A 10 NFEDIKRKIEGLGAKFFGIEEQEDVYFELPS-----PKLLRVRKI--NNTGKSYITYKEIL-DK------RNEEFYELEF 75 (165)
T ss_dssp CHHHHHHHHHHHTCEEEEEEEEEEEEECCST-----TEEEEEEEE--TTTTEEEEEEEEEC-SS------SSCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCcCcceeEEEEEEcCCC-----CCEEEEEEE--cCCCEEEEEEeCcC-CC------CceeeeEEEE
Confidence 3567777777554432234444445555431 289999974 22467999887755 32 2347777777
Q ss_pred eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCChHH
Q 027885 93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE 170 (217)
Q Consensus 93 ~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~~~ 170 (217)
.+.+ .+...|..|||..-+.+-+.-+.|.+ +.+.|.+-.+.. .| ..+||=.+.. ....
T Consensus 76 ~i~~~~~~~~~L~~lg~~~~~~~~k~R~~~~~---~~~~i~lD~~~~--------------~g-~~~EiE~~~~--~~~~ 135 (165)
T 2dc4_A 76 EVQDPEGAIELFKRLGFKVQGVVKKRRWIYKL---NNVTFELNRVEK--------------AG-DFLDIEVITS--NPEE 135 (165)
T ss_dssp EBSCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEECCS--CHHH
T ss_pred EcCCHHHHHHHHHHcCCcEEEEEEEEEEEEEE---CCEEEEEEecCC--------------Cc-cEEEEEEEcC--CHHH
Confidence 6655 56778899999999999998889986 567877776531 24 6678865543 4445
Q ss_pred HHHHHHHHHhhhc
Q 027885 171 VASAVSSFCEYLA 183 (217)
Q Consensus 171 ~a~~i~~FaeqL~ 183 (217)
+...+..|+++|-
T Consensus 136 ~~~~~~~l~~~lg 148 (165)
T 2dc4_A 136 GKKIIWDVARRLG 148 (165)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 6778888888874
No 9
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=54.43 E-value=15 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=16.3
Q ss_pred CCCCeEEEEe-eeCCCCCCceEEEEe
Q 027885 46 GNVASEVRLL-CDLEQPEPTWTVKHL 70 (217)
Q Consensus 46 g~~~~~lRlr-r~L~~p~~~W~lry~ 70 (217)
|=-|||+|+. +. +..|++.|+
T Consensus 56 GfHPVEIrl~~~~----~~~W~i~YI 77 (147)
T 2w56_A 56 GFHPVEMAICQTS----TGEWSIEYI 77 (147)
T ss_dssp CSCCEEEEEEECT----TSCEEEEEE
T ss_pred CcCCEEEEEEecC----CCcEEEEEE
Confidence 5579999999 43 678999853
No 10
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=53.14 E-value=16 Score=29.30 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=16.3
Q ss_pred CCCCeEEEEe-eeCCCCCCceEEEEe
Q 027885 46 GNVASEVRLL-CDLEQPEPTWTVKHL 70 (217)
Q Consensus 46 g~~~~~lRlr-r~L~~p~~~W~lry~ 70 (217)
|=-|||+|+. +. +..|++.|+
T Consensus 56 GfHPVEIrl~~~~----~~~W~i~YI 77 (148)
T 2v1l_A 56 GFHPVEIALSQSS----DGQWCIEYI 77 (148)
T ss_dssp CCCCEEEEEEECS----SSCEEEEEE
T ss_pred CcCCEEEEEEecC----CCcEEEEEE
Confidence 5579999999 43 678999753
No 11
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex; HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1qso_A
Probab=36.72 E-value=15 Score=25.60 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.0
Q ss_pred cHHHHHHHhCceeeEEE
Q 027885 97 NALRLFNALGYKLDHEL 113 (217)
Q Consensus 97 ~v~~Fl~~LGfr~d~E~ 113 (217)
.+..|++.+||+.++..
T Consensus 130 ~a~~~y~k~Gf~~~~~~ 146 (152)
T 1qsm_A 130 RAQLLYVKVGYKAPKIL 146 (152)
T ss_dssp HHHHHHHHHEEECSEEE
T ss_pred HHHHHHHHcCCCccceE
Confidence 57889999999977653
No 12
>4f78_A D,D-dipeptidase/D,D-carboxypeptidase; center for structural genomics of infectious diseases; HET: MSE; 1.95A {Enterococcus faecalis}
Probab=28.80 E-value=18 Score=31.30 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=11.3
Q ss_pred CCceEEEEecccc
Q 027885 62 EPTWTVKHLGGAM 74 (217)
Q Consensus 62 ~~~W~lry~G~pe 74 (217)
-.|||+||+|.|.
T Consensus 164 yEPWH~rYvG~~~ 176 (255)
T 4f78_A 164 HEPWHFRYVGYPH 176 (255)
T ss_dssp CCTTEEEECCTTH
T ss_pred CCccEEEEeCHHH
Confidence 3689999999986
No 13
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=27.20 E-value=84 Score=22.16 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=17.2
Q ss_pred EEeeeec-cHHHHHHHhCceeeEEE
Q 027885 90 VESKVSK-NALRLFNALGYKLDHEL 113 (217)
Q Consensus 90 id~~~S~-~v~~Fl~~LGfr~d~E~ 113 (217)
+++..+| .+..|++.+||+...+-
T Consensus 124 l~v~~~N~~a~~~Y~k~GF~~~~~~ 148 (153)
T 1z4e_A 124 LTTDKQRPDALRFYEQLGFKASHEG 148 (153)
T ss_dssp EEEETTCTTHHHHHHHHTCEEEEEE
T ss_pred EEEccCChHHHHHHHHcCCceecee
Confidence 3333334 68999999999987653
No 14
>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A
Probab=26.49 E-value=1.3e+02 Score=20.96 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=18.4
Q ss_pred eEEeeeec--cHHHHHHHhCceeeEE
Q 027885 89 MVESKVSK--NALRLFNALGYKLDHE 112 (217)
Q Consensus 89 ~id~~~S~--~v~~Fl~~LGfr~d~E 112 (217)
.+...+++ ...+|+++|||+..++
T Consensus 6 ~~~l~v~D~~~a~~FY~~LG~~~~~~ 31 (126)
T 1ecs_A 6 TPNLPSRDFDSTAAFYERLGFGIVFR 31 (126)
T ss_dssp EEEEEESCHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHCCCEEEec
Confidence 34445665 7888999999999876
No 15
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=25.70 E-value=99 Score=26.45 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.5
Q ss_pred cCCCCCChHHHHHHHHHHHhhhc--c---ceeeecCCcccCcccchhHHHHHHh
Q 027885 161 APASSENYTEVASAVSSFCEYLA--P---LLHLSKPGVSTGVVPTAAAAAVSLM 209 (217)
Q Consensus 161 ap~~~e~~~~~a~~i~~FaeqL~--P---lv~L~K~~~~~~~~~t~~~~a~~~~ 209 (217)
.|..++|+ +.++++.|.+.+. | +..-+.+....|+=+++|.+||.+.
T Consensus 64 ~p~~~~Nl--v~~A~~~l~~~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~ 115 (306)
T 3pyf_A 64 LPTDERNL--AWQAAELMAEHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLV 115 (306)
T ss_dssp SCCSTTSH--HHHHHHHHHHHTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHH
T ss_pred CCCCCccH--HHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHH
Confidence 46667786 7788888887764 2 2223568889999999998888765
No 16
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=23.92 E-value=3e+02 Score=22.54 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=81.2
Q ss_pred HHHHhhhhccCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCccee----------
Q 027885 17 LEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVL---------- 85 (217)
Q Consensus 17 L~~RL~GLcd~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~---------- 85 (217)
+..+|..+......++...-+-|-++.. .....+.||+|+. + .|+++.-|..- . ..+++..
T Consensus 37 ~~~~L~~~~~~~~~~~~q~n~YfDTpd~~L~~~~~aLRiR~~----~-~~tlK~p~~~g--~-~~~~~ey~e~~~~~~~~ 108 (234)
T 3bhd_A 37 TEERLQELGGTLEYRVTFRDTYYDTPELSLMQADHWLRRRED----S-GWELKCPGAAG--V-LGPHTEYKELTAEPTIV 108 (234)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEECTTCHHHHTTCEEEEETT----T-EEEEEEESSBT--T-BCTTSEEEEECSHHHHH
T ss_pred HHHHHHhCCCCCCCcceEEEEEeeCCChHHHhCCcEEEEECC----C-CeEEecCCccC--c-cCCcceeccccCccchh
Confidence 4567777654433444444555544311 1234688999975 2 39998755321 0 1111110
Q ss_pred --eeeeEEe--eeeccHHHHHHHhCceeeEEEEEEeeEEEEe-e----Cc-eEEEEEEEEeeecccCCCCCCCcCCCcee
Q 027885 86 --VRSMVES--KVSKNALRLFNALGYKLDHELLRVGFAFHFQ-R----GA-QITVTVSSVNKMLKLHATDEAVPVTPGIQ 155 (217)
Q Consensus 86 --VR~~id~--~~S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~-~----~g-~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~ 155 (217)
+|..+.. .-.+++...+..+||+.-+++-+.=..|.+. . .+ .+.|++-++. . |.-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~--------------G~~ 173 (234)
T 3bhd_A 109 AQLCKVLRADGLGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-F--------------GYA 173 (234)
T ss_dssp HHHHHHHTC---CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-T--------------SCE
T ss_pred hhhhhhhcCCccchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-C--------------CCE
Confidence 1111111 1124788889999999998888877778761 1 14 7888877764 1 223
Q ss_pred EEEEE--cCCCCCChHHHHHHHHHHHhhhc
Q 027885 156 LVEVT--APASSENYTEVASAVSSFCEYLA 183 (217)
Q Consensus 156 LVEvS--ap~~~e~~~~~a~~i~~FaeqL~ 183 (217)
.+||= ... .+......+.+..||.+|-
T Consensus 174 ~~ElElEl~~-~~~~~~~~~~l~~la~~Lg 202 (234)
T 3bhd_A 174 VGEVEALVHE-EAEVPTALEKIHRLSSMLG 202 (234)
T ss_dssp EEEEEEEESS-GGGHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCC-cccchHHHHHHHHHHHHcC
Confidence 66773 332 3344456778889999885
No 17
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=23.46 E-value=2.5e+02 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCceeEEEEEcCCCCCChHHHHHHHHHHHhhh
Q 027885 151 TPGIQLVEVTAPASSENYTEVASAVSSFCEYL 182 (217)
Q Consensus 151 ~~~s~LVEvSap~~~e~~~~~a~~i~~FaeqL 182 (217)
.++.|..|||.|--+--.-. ..+...|...+
T Consensus 76 i~~~Y~LEVSSPGldRpL~~-~~df~r~~G~~ 106 (164)
T 1ib8_A 76 FPEQYFLEITSPGLERPLKT-KDAVAGAVGKY 106 (164)
T ss_dssp CCSCEEEEEECCSSSSCCSS-HHHHHHHCSEE
T ss_pred CCCCeEEEEeCCCCCCCCCC-HHHHHHhCCcE
Confidence 35689999999975554422 33444555443
No 18
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H 1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H* 1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H 1y1y_H ...
Probab=22.29 E-value=77 Score=25.38 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.1
Q ss_pred eeEEEEEEeeEEEEee--CceEEEEEE
Q 027885 109 LDHELLRVGFAFHFQR--GAQITVTVS 133 (217)
Q Consensus 109 ~d~E~~~~G~~f~~~~--~g~ikI~Vs 133 (217)
-+|||+.-|..|+|.. +.+++|.+|
T Consensus 91 d~ydYVM~GkvYk~e~~~~~~~~vy~S 117 (146)
T 1a1d_A 91 DDYDYVMYGTAYKFEEVSKDLIAVYYS 117 (146)
T ss_pred cccCEEEeeEEEEEeecCCceEEEEEE
Confidence 6899999999999954 235666555
No 19
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=22.23 E-value=1.2e+02 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEeeeec---cHHHHHHHhCceeeEEEEE
Q 027885 90 VESKVSK---NALRLFNALGYKLDHELLR 115 (217)
Q Consensus 90 id~~~S~---~v~~Fl~~LGfr~d~E~~~ 115 (217)
+.+.+|+ +++..+++-||--+||+..
T Consensus 24 v~iP~Sk~~~~il~iL~~eGyI~~~~~~~ 52 (130)
T 1sei_A 24 LEVPASKIKREIAEILKREGFIRDYEYIE 52 (130)
T ss_dssp EEEECCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred EEecCcHHHHHHHHHHHHCCCceeEEEEe
Confidence 3356665 8888999999999999874
No 20
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=21.71 E-value=80 Score=21.07 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=26.8
Q ss_pred ccCcceeeeeeEEeeeeccHHHHHHHhCceeeEEEEE-----EeeEEE
Q 027885 79 AEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR-----VGFAFH 121 (217)
Q Consensus 79 ~~~~~a~VR~~id~~~S~~v~~Fl~~LGfr~d~E~~~-----~G~~f~ 121 (217)
...+-+.|++.-......++.++|...|=..+-.+.+ +||.|-
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV 53 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVV 53 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEE
Confidence 3344555665544333458889999998766666554 566654
Done!