BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027886
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
 pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor Bw1540u88ud
 pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor Bw1540u88ud
 pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
 pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
 pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
 pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
           Based Inhibitor, Bw2315u89uc
          Length = 592

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 149 ERTTFFSDKITISDVSGDATTKLSDDKPVTREDAEGIISP 188
           +R + F D + +SDV    T K+     ++RE ++GII+P
Sbjct: 310 DRMSSFGDFVALSDVCDVPTAKI-----ISREVSDGIIAP 344


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.121    0.319 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,227,244
Number of Sequences: 62578
Number of extensions: 174060
Number of successful extensions: 424
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 10
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (23.5 bits)