Query 027886
Match_columns 217
No_of_seqs 113 out of 124
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cgi_A Propanediol utilization 81.4 0.74 2.5E-05 36.5 2.3 23 59-81 8-31 (124)
2 4fay_A Microcompartments prote 9.6 66 0.0023 28.4 0.1 33 47-81 18-53 (258)
3 4axi_A EUTS, ethanolamine carb 8.1 2E+02 0.0069 22.5 2.3 23 58-80 7-30 (125)
4 1fll_X B-cell surface antigen 3.9 2.1E+02 0.0071 17.1 0.0 10 106-115 11-20 (26)
5 3ov5_A VIRB7 (XAC2622), unchar 3.8 5.9E+02 0.02 18.9 2.5 22 42-67 62-83 (85)
6 3m91_B Prokaryotic ubiquitin-l 3.3 2.3E+02 0.0078 18.9 -0.2 14 3-16 30-43 (44)
7 3emf_A HIA (adhesin); binding 3.3 4.3E+02 0.015 20.7 1.3 36 30-66 80-115 (116)
8 3i96_A Ethanolamine utilizatio 2.9 4.5E+02 0.015 20.4 1.1 22 59-80 4-26 (119)
9 4dbb_A Amyloid beta A4 precurs 2.9 7.3E+02 0.025 19.2 2.3 27 92-118 122-149 (162)
10 2cr5_A Reproduction 8; UBX dom 2.8 9.9E+02 0.034 17.2 2.9 23 46-68 21-43 (109)
No 1
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=81.42 E-value=0.74 Score=36.51 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.1
Q ss_pred CeeEeeeecc-eeceeeccCCCCc
Q 027886 59 NRIITEAIGD-QVLAQYATPEVPT 81 (217)
Q Consensus 59 ~RivTE~VaG-QVvgq~~~p~~~~ 81 (217)
-|||+|||+| |++..++-|.|..
T Consensus 8 ~r~i~e~V~gkqv~~~~VIan~~~ 31 (124)
T 3cgi_A 8 DRMIQEYVPGKQVTLAHLIANPGK 31 (124)
T ss_dssp CEEEEEECCCCEEEEEEEESSCCH
T ss_pred eeEEEeeeCCEEEEEeeeeCCCCH
Confidence 4999999997 9999999988744
No 2
>4fay_A Microcompartments protein; BMC domain, shell protein, glycerol-binding protein; 1.56A {Lactobacillus reuteri}
Probab=9.56 E-value=66 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=16.4
Q ss_pred CeeeEecccCCCCeeEeeeecc---eeceeeccCCCCc
Q 027886 47 GVTVSESTVADGNRIITEAIGD---QVLAQYATPEVPT 81 (217)
Q Consensus 47 GV~VtEt~vp~G~RivTE~VaG---QVvgq~~~p~~~~ 81 (217)
|+..... .. ..|+|||||+| |+---|+-|.+..
T Consensus 18 ~~~~~~~-~~-~~~~i~E~V~~~~~~~Ti~~VI~Nv~p 53 (258)
T 4fay_A 18 GSHMNDF-LN-STSTVPEFVGASEIGDTIGMVIPRVDQ 53 (258)
T ss_dssp ---------------CTTEEEEETTTTEEEEEESSCCH
T ss_pred Ccccccc-cc-cccceeeeeCcccccceEEEEeCCCCH
Confidence 5544433 33 67999999998 6877888887744
No 3
>4axi_A EUTS, ethanolamine carboxysome structural protein; bacterial microcompartment; HET: GOL; 1.51A {Clostridium difficile}
Probab=8.07 E-value=2e+02 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=17.1
Q ss_pred CCeeEeeeecc-eeceeeccCCCC
Q 027886 58 GNRIITEAIGD-QVLAQYATPEVP 80 (217)
Q Consensus 58 G~RivTE~VaG-QVvgq~~~p~~~ 80 (217)
-.|||-|+|.| ||-.-++-|.+.
T Consensus 7 ~~r~iqe~VpgkqvTla~vIanv~ 30 (125)
T 4axi_A 7 KQRVIQEYVPGKQVTLAHIIANPN 30 (125)
T ss_dssp CEEEEEEECCCCEEEEEEEESSCC
T ss_pred cceEEeeecCCcEEEEEEEeCCCC
Confidence 35899999999 665577777664
No 4
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=3.86 E-value=2.1e+02 Score=17.09 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=5.9
Q ss_pred hcCCCCChhH
Q 027886 106 AGDKAVDQRD 115 (217)
Q Consensus 106 ~g~kPV~~~D 115 (217)
.+.+||.++|
T Consensus 11 ~~~qPVaQEd 20 (26)
T 1fll_X 11 HGSQPVTQED 20 (26)
T ss_dssp CCSSSCCCCC
T ss_pred hcCccchhhc
Confidence 4556666655
No 5
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=3.79 E-value=5.9e+02 Score=18.92 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=16.1
Q ss_pred cccCCCeeeEecccCCCCeeEeeeec
Q 027886 42 IARDQGVTVSESTVADGNRIITEAIG 67 (217)
Q Consensus 42 ~a~d~GV~VtEt~vp~G~RivTE~Va 67 (217)
+=.++||.|+- . |.+||.+.++
T Consensus 62 ~Y~aqgv~vsv---~-~n~ivVq~~~ 83 (85)
T 3ov5_A 62 VYAAQGVSVSV---S-ANKLLVQPVP 83 (85)
T ss_dssp HHGGGTEEEEE---E-TTEEEEEECC
T ss_pred HHHhCCeEEEE---E-CCEEEEEeCC
Confidence 34688999874 4 8888887664
No 6
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=3.34 E-value=2.3e+02 Score=18.85 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=1.0
Q ss_pred hhhhhhhcccCCCC
Q 027886 3 AAENMALGKTQRGG 16 (217)
Q Consensus 3 sAE~~v~G~tqkgG 16 (217)
.||.-|-|-.||||
T Consensus 30 NAeeFV~~fVQKGG 43 (44)
T 3m91_B 30 NAEDFVRAYVQKGG 43 (44)
T ss_dssp TC------------
T ss_pred hHHHHHHHHHHccC
Confidence 36777888889998
No 7
>3emf_A HIA (adhesin); binding domain, autotransporter, trimeric, cell adhesion; 2.00A {Haemophilus influenzae}
Probab=3.29 E-value=4.3e+02 Score=20.75 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=25.5
Q ss_pred hcccccCCcccccccCCCeeeEecccCCCCeeEeeee
Q 027886 30 RAGFTSHSTATHIARDQGVTVSESTVADGNRIITEAI 66 (217)
Q Consensus 30 r~G~V~~~~~t~~a~d~GV~VtEt~vp~G~RivTE~V 66 (217)
-.-.|.+.+--+...+.|++|+-...- |.|.||=.|
T Consensus 80 y~d~VknAneV~F~G~gg~~VtgkT~~-g~rtITv~v 115 (116)
T 3emf_A 80 KSQQVKHADEVLFEGKGGVQVTSTSEN-GKHTITFAL 115 (116)
T ss_dssp EEEEEETTCEEEEEECTTCEEEEEEET-TEEEEEEEC
T ss_pred hhhhcccCcEEEEEecCceEEEEeecC-CeEEEEEec
Confidence 334455555556667889999988866 999999443
No 8
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=2.93 E-value=4.5e+02 Score=20.39 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=14.6
Q ss_pred CeeEeeeecc-eeceeeccCCCC
Q 027886 59 NRIITEAIGD-QVLAQYATPEVP 80 (217)
Q Consensus 59 ~RivTE~VaG-QVvgq~~~p~~~ 80 (217)
.|||-|+|-| ||---++-|.+.
T Consensus 4 ~r~iqe~VpgkqvT~ahvIanv~ 26 (119)
T 3i96_A 4 ERIIQEFVPGKQVTLAHLIAHPG 26 (119)
T ss_dssp --CCEEEEECCEEEEEEEEECCC
T ss_pred ceEeeeecCCcEEEEEEEeCCCC
Confidence 4899999999 555466666663
No 9
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=2.87 E-value=7.3e+02 Score=19.22 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=18.4
Q ss_pred CchHhHHHHHhhh-hhcCCCCChhHHHH
Q 027886 92 QSTIGEALEATAL-SAGDKAVDQRDAAA 118 (217)
Q Consensus 92 ~itiGealeaaa~-~~g~kPV~~~DAAa 118 (217)
.-|||.||+.+=+ -+-...++|+|..-
T Consensus 122 ~~tigqAF~~ay~~~l~~~~~~~~~~~~ 149 (162)
T 4dbb_A 122 AQSIGQAFSVAYQEFLRANGINPEDLSQ 149 (162)
T ss_dssp HHHHHHHHHHHHGGGTTC--CCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHccc
Confidence 3579999998875 47777788877543
No 10
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=2.77 E-value=9.9e+02 Score=17.18 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=17.4
Q ss_pred CCeeeEecccCCCCeeEeeeecc
Q 027886 46 QGVTVSESTVADGNRIITEAIGD 68 (217)
Q Consensus 46 ~GV~VtEt~vp~G~RivTE~VaG 68 (217)
.+++--...+|+|.||+.-|-.-
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~ 43 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKS 43 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESS
T ss_pred CCcEEEEEECCCCCEEEEEeCCC
Confidence 56666677889999988777555
Done!