Query 027886
Match_columns 217
No_of_seqs 113 out of 124
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 03:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027886.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027886hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v58a2 d.17.3.1 (A:2-61) Thio 9.2 2.1E+02 0.015 18.3 4.2 39 43-81 9-48 (60)
2 d3lada3 d.87.1.1 (A:349-472) D 8.6 69 0.0051 22.1 1.7 20 93-112 103-122 (124)
3 d1dxla3 d.87.1.1 (A:348-470) D 6.1 92 0.0067 21.4 1.3 19 93-111 103-121 (123)
4 d2d0oa1 c.8.6.1 (A:93-254) Dio 6.1 49 0.0035 25.6 -0.3 57 123-192 3-62 (162)
5 d1lvla3 d.87.1.1 (A:336-458) D 5.6 1.2E+02 0.0088 20.8 1.7 19 93-111 103-121 (123)
6 d1h2sb_ f.17.4.1 (B:) Sensory 5.2 2.1E+02 0.016 18.0 2.6 26 92-126 16-41 (60)
7 d1v59a3 d.87.1.1 (A:356-478) D 4.4 1.4E+02 0.01 20.4 1.3 19 93-111 103-121 (123)
8 d1vfra_ d.90.1.1 (A:) Flavin r 3.7 2.2E+02 0.016 19.6 2.0 25 168-192 14-38 (217)
9 d1ykia1 d.90.1.1 (A:2-217) Oxy 3.5 2.4E+02 0.017 19.4 2.0 23 170-192 14-36 (216)
10 d2cr5a1 d.15.1.2 (A:8-103) UBX 3.4 3.9E+02 0.028 16.9 3.0 24 45-68 13-36 (96)
No 1
>d1v58a2 d.17.3.1 (A:2-61) Thiol:disulfide interchange protein DsbG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=2.1e+02 Score=18.35 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.1
Q ss_pred ccCCCeeeEe-cccCCCCeeEeeeecceeceeeccCCCCc
Q 027886 43 ARDQGVTVSE-STVADGNRIITEAIGDQVLAQYATPEVPT 81 (217)
Q Consensus 43 a~d~GV~VtE-t~vp~G~RivTE~VaGQVvgq~~~p~~~~ 81 (217)
..+||++|.. .+.|+|=|=.--...+|.|.-|+.|+-..
T Consensus 9 le~qG~~ii~~F~ApgGl~gya~~~~~~~valYlTpDGkh 48 (60)
T d1v58a2 9 IEKQGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKH 48 (60)
T ss_dssp HHTTTEEEEEEEECSTTCEEEEEEETTEEEEEEECTTSSC
T ss_pred HHhCCCEEEEEecCCCchhhHHHHhCCCceEEEEcCCCCE
Confidence 4578887754 45886667777788899999999997643
No 2
>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=8.56 E-value=69 Score=22.09 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.1
Q ss_pred chHhHHHHHhhhhhcCCCCC
Q 027886 93 STIGEALEATALSAGDKAVD 112 (217)
Q Consensus 93 itiGealeaaa~~~g~kPV~ 112 (217)
-|++|+|.-+++.+-+|||-
T Consensus 103 PT~sE~l~~Aa~~~~~~~ih 122 (124)
T d3lada3 103 PALSEALHEAALAVSGHAIH 122 (124)
T ss_dssp SCSHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHhcCCCcc
Confidence 37899998888899999973
No 3
>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=6.12 E-value=92 Score=21.41 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.1
Q ss_pred chHhHHHHHhhhhhcCCCC
Q 027886 93 STIGEALEATALSAGDKAV 111 (217)
Q Consensus 93 itiGealeaaa~~~g~kPV 111 (217)
-|+.|.|.-+++.+-+|||
T Consensus 103 PT~sE~~~~aa~~~~~~~i 121 (123)
T d1dxla3 103 PTMSEAIKEAAMATYDKPI 121 (123)
T ss_dssp SCTTHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 3789999988888888987
No 4
>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=6.12 E-value=49 Score=25.55 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=36.7
Q ss_pred HHhhccCCCCCCCcHHHHHhhHHHhcccccCCCCcchhhhhhhhcc---ccCCCCCCCCHhhHhhhhchhhhc
Q 027886 123 EARASATNEIKPGGIGSRAQSAATQNERTTFFSDKITISDVSGDAT---TKLSDDKPVTREDAEGIISPEIRN 192 (217)
Q Consensus 123 E~ratG~~~~~~GG~AA~aQsAA~~N~r~~~~~~kitigdvL~~At---~kl~~Dk~vt~eDAaaV~aAE~R~ 192 (217)
|..+.|.++..|||+. ..++..+.|.+.+..-. --+--++.++.|||++...+..+.
T Consensus 3 eStmIGHNP~TPgG~G-------------~gvG~tv~~~~L~~~~~~~~~Ivvv~~~~DFe~aA~~In~a~~~ 62 (162)
T d2d0oa1 3 ESTMIGHNPKTPGGAG-------------LGTGITITPQELLTRPADAPYILVVSSAFDFADIASVINASLRA 62 (162)
T ss_dssp TTCEECCCCSCCBSCE-------------EEEEEEECGGGGGTSCTTSEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred cccccccCcCCCCccc-------------ccceEEEeHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Confidence 5667899999999875 11333456666553211 112346889999999988777553
No 5
>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=5.60 E-value=1.2e+02 Score=20.79 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=16.0
Q ss_pred chHhHHHHHhhhhhcCCCC
Q 027886 93 STIGEALEATALSAGDKAV 111 (217)
Q Consensus 93 itiGealeaaa~~~g~kPV 111 (217)
=|++|+|.-+++.+-+||+
T Consensus 103 PT~sE~~~~aa~~~~~~~~ 121 (123)
T d1lvla3 103 PTLGEAVQEAALRALGHAL 121 (123)
T ss_dssp TCTTHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 3789999888888888887
No 6
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=5.19 E-value=2.1e+02 Score=17.98 Aligned_cols=26 Identities=38% Similarity=0.385 Sum_probs=19.0
Q ss_pred CchHhHHHHHhhhhhcCCCCChhHHHHHHHHHHhh
Q 027886 92 QSTIGEALEATALSAGDKAVDQRDAAAIYAAEARA 126 (217)
Q Consensus 92 ~itiGealeaaa~~~g~kPV~~~DAAaiqaAE~ra 126 (217)
+|.|||+-.+++ - -||+++|.+-.++
T Consensus 16 aiaygevtaaaa--t-------gdaaavqeaavsa 41 (60)
T d1h2sb_ 16 AIAYGEVTAAAA--T-------GDAAAVQEAAVSA 41 (60)
T ss_dssp HHHHHHHHHHHH--H-------TCHHHHHHHHHHH
T ss_pred hhhhceehHhhh--c-------CcHHHHHHHHHHH
Confidence 588999877665 2 4788888776654
No 7
>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.39 E-value=1.4e+02 Score=20.38 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.5
Q ss_pred chHhHHHHHhhhhhcCCCC
Q 027886 93 STIGEALEATALSAGDKAV 111 (217)
Q Consensus 93 itiGealeaaa~~~g~kPV 111 (217)
-|+.|+|.-+++++=+|||
T Consensus 103 PT~sE~~~~Aa~~~~~~~i 121 (123)
T d1v59a3 103 PTLSEAFKEANMAAYDKAI 121 (123)
T ss_dssp TCTTHHHHHHHHHHHSCCS
T ss_pred CcHHHHHHHHHHHHcCCCC
Confidence 4789999888888888887
No 8
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]}
Probab=3.75 E-value=2.2e+02 Score=19.63 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.4
Q ss_pred cccCCCCCCCCHhhHhhhhchhhhc
Q 027886 168 TTKLSDDKPVTREDAEGIISPEIRN 192 (217)
Q Consensus 168 t~kl~~Dk~vt~eDAaaV~aAE~R~ 192 (217)
..+--.||||+.||=+.|..+-.++
T Consensus 14 vR~fd~~~~V~~e~i~~il~aa~~A 38 (217)
T d1vfra_ 14 SKKYDPSKKVSQEDLAVLLEALRLS 38 (217)
T ss_dssp CSSBCTTCCCCHHHHHHHHHHHHTC
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHhC
Confidence 3455578999999999998877665
No 9
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]}
Probab=3.53 E-value=2.4e+02 Score=19.43 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=17.1
Q ss_pred cCCCCCCCCHhhHhhhhchhhhc
Q 027886 170 KLSDDKPVTREDAEGIISPEIRN 192 (217)
Q Consensus 170 kl~~Dk~vt~eDAaaV~aAE~R~ 192 (217)
..-.||||+.|+=+.|..+-.++
T Consensus 14 ~f~~~~~V~~e~l~~il~~a~~a 36 (216)
T d1ykia1 14 AFDASKKLTPEQAEQIKTLLQYS 36 (216)
T ss_dssp CBCTTCCCCHHHHHHHHHHHHHC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhC
Confidence 33467899999999988875544
No 10
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.45 E-value=3.9e+02 Score=16.90 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=17.4
Q ss_pred CCCeeeEecccCCCCeeEeeeecc
Q 027886 45 DQGVTVSESTVADGNRIITEAIGD 68 (217)
Q Consensus 45 d~GV~VtEt~vp~G~RivTE~VaG 68 (217)
+.+++--...+|+|.|+...|---
T Consensus 13 ~~~~~~i~iRlPdG~r~~r~F~~~ 36 (96)
T d2cr5a1 13 AEEVVTVALRCPNGRVLRRRFFKS 36 (96)
T ss_dssp CSSEEEEEEECTTSCEEEEEEESS
T ss_pred CCCeEEEEEECCCCCEEEEEECCc
Confidence 456666677799999988766544
Done!