BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027887
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1
Length = 142
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 85/117 (72%), Gaps = 3/117 (2%)
Query: 65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
Q+ +TL +G ++IT +VK++ + L F G + F+ HTSA+LTINEN+D+D R D
Sbjct: 5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63
Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGM 181
L+KIVPE SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ +
Sbjct: 64 MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDI 118
>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3
SV=1
Length = 138
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 3/124 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++ GTWQG++
Sbjct: 61 HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118
Query: 183 TLTH 186
H
Sbjct: 119 LGEH 122
>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1
Length = 138
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 3/124 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++ GTWQG++
Sbjct: 61 HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118
Query: 183 TLTH 186
H
Sbjct: 119 LGEH 122
>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1
Length = 138
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L +GTWQG++
Sbjct: 61 ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118
Query: 183 TLTHN 187
H
Sbjct: 119 LGEHR 123
>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1
Length = 138
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L +GTWQG++
Sbjct: 61 ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118
Query: 183 TLTHN 187
H
Sbjct: 119 LGEHR 123
>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1880 PE=3 SV=1
Length = 147
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 58 ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
A+ R Q+ + + + H KI + + Q S K GL +F+ HTSASL I EN
Sbjct: 5 AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62
Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
D DV D F ++VPE GR ++H+ EG DDMPAHI+S++ + IPI +G+L +G
Sbjct: 63 DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120
Query: 177 TWQGMFTLTHN 187
TWQG+F H
Sbjct: 121 TWQGVFLWEHR 131
>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1081 PE=3 SV=1
Length = 138
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 80 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
ITP I+ I++ S+ K G+A +++ HT+A +TINEN D V+ D FL+ ++P+
Sbjct: 23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76
Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELH 195
+W T LEG D AHIKSS+ GC+ TI I DG+ +GTWQG+F +G R +E +
Sbjct: 77 NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEFDGPRRREFY 131
>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3
SV=2
Length = 132
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 84 IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
I +E+ L E G A ++ HT+A +TINEN D DV+ D +++ P W
Sbjct: 18 ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71
Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVK 192
+H L+ + AH+KSS G + + + +G+L +GTWQG++ +G R +
Sbjct: 72 EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDGPRTR 124
>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2050 PE=3 SV=1
Length = 126
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 94 EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH-TLEGPDDMP 152
E + GL ++ HT+ +L INE + + +D F+ K+VP G+ +KH L+ D
Sbjct: 25 ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79
Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKEL 194
AH+K+++ G ++ +P+ G+L +GTWQ + L +G R + +
Sbjct: 80 AHLKATLLGNSVVVPVESGKLALGTWQRILFLEFDGPRTRRV 121
>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_771 PE=3 SV=1
Length = 143
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 72 PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
PLR R LI + + S + G+ ++F H+++++ INEN +S + D E+ L
Sbjct: 15 PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73
Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGL 189
VP AS+ H ++ +H+++ + G + T+P+ +G +++GTWQ +F +G
Sbjct: 74 EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAELDGP 130
Query: 190 RVKELH 195
R + +
Sbjct: 131 RNRRIR 136
>sp|P67122|Y2586_MYCBO UPF0047 protein Mb2586c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2586c PE=3 SV=1
Length = 129
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL ++F+ H +A + I E D +T + +++P R ++H H+
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP--RDDRYRHAHGSYGHGADHLLP 84
Query: 158 SMFGCTLTIPITDGQLNMGTWQGMFTLTHN 187
+ ++T+P++ GQ +GTWQ + + N
Sbjct: 85 AFVAPSVTVPVSGGQPLLGTWQSIVLVDLN 114
>sp|P67121|Y2556_MYCTU UPF0047 protein Rv2556c/MT2633 OS=Mycobacterium tuberculosis
GN=Rv2556c PE=3 SV=1
Length = 129
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL ++F+ H +A + I E D +T + +++P R ++H H+
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP--RDDRYRHAHGSYGHGADHLLP 84
Query: 158 SMFGCTLTIPITDGQLNMGTWQGMFTLTHN 187
+ ++T+P++ GQ +GTWQ + + N
Sbjct: 85 AFVAPSVTVPVSGGQPLLGTWQSIVLVDLN 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,717,111
Number of Sequences: 539616
Number of extensions: 3343230
Number of successful extensions: 13537
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13344
Number of HSP's gapped (non-prelim): 179
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)