Query 027887
Match_columns 217
No_of_seqs 159 out of 1115
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6c_A AQ_2013 protein; NPPSFA 100.0 1.7E-56 5.9E-61 364.0 16.4 135 61-201 1-136 (137)
2 1vmj_A Hypothetical protein TM 100.0 8.9E-55 3E-59 359.4 16.9 138 60-201 12-150 (151)
3 2p6h_A Hypothetical protein; s 100.0 1.6E-54 5.5E-59 351.3 15.4 132 63-201 1-133 (134)
4 1ve0_A Hypothetical protein (S 100.0 3E-54 1E-58 349.7 16.5 132 61-201 1-133 (134)
5 1vph_A Hypothetical protein SS 100.0 3.4E-54 1.1E-58 355.4 15.2 135 60-201 12-148 (149)
6 1vmh_A Uncharacterized conserv 100.0 2.6E-52 8.8E-57 342.5 15.1 127 65-198 16-143 (144)
7 1vmf_A Hypothetical protein; s 100.0 4.5E-52 1.5E-56 341.4 16.0 131 64-201 12-144 (145)
8 2cu5_A Conserved hypothetical 100.0 1.6E-50 5.5E-55 326.4 13.5 124 66-198 5-128 (129)
9 4f02_C Eukaryotic translation 21.6 26 0.00088 20.8 0.5 21 66-86 1-21 (27)
10 2ftc_A Mitochondrial ribosomal 15.5 2.1E+02 0.0071 23.3 4.9 74 80-168 104-185 (189)
No 1
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=1.7e-56 Score=364.03 Aligned_cols=135 Identities=27% Similarity=0.450 Sum_probs=129.3
Q ss_pred CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 027887 61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (217)
Q Consensus 61 m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~ 139 (217)
|+++|++|+|+|++ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.
T Consensus 1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 75 (137)
T 2p6c_A 1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP-- 75 (137)
T ss_dssp CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence 89999999999986 7999999999999998 999999999999999999999999 99999999999999999974
Q ss_pred CceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL 201 (217)
Q Consensus 140 ~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g 201 (217)
+|+|++||+||||||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++.. +|
T Consensus 76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i-~G 136 (137)
T 2p6c_A 76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKRVVIKI-IG 136 (137)
T ss_dssp TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESSCSSCEEEEEEE-EE
T ss_pred CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECCCCCccEEEEEE-ec
Confidence 59999999999999999999999999999999999999999999999999999997554 66
No 2
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=100.00 E-value=8.9e-55 Score=359.40 Aligned_cols=138 Identities=28% Similarity=0.459 Sum_probs=129.2
Q ss_pred CCeEEEEEEEecCC-CCeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 027887 60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (217)
Q Consensus 60 ~m~~~q~titv~T~-~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~ 138 (217)
-|+-|+++|+|+|. +++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|+||||++..
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~ 88 (151)
T 1vmj_A 12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY 88 (151)
T ss_dssp -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence 48999999999996 57999999999999998 999999999999999999999999 999999999999999998741
Q ss_pred CCceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL 201 (217)
Q Consensus 139 ~~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g 201 (217)
..|+|++||+|||+||+||+|+|+|++|||.||+|.|||||+|||||||+||+|+|++. ++|
T Consensus 89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg~r~R~V~v~-i~G 150 (151)
T 1vmj_A 89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVK-IIG 150 (151)
T ss_dssp GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSSCEEEEEE-EEE
T ss_pred CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCeeEEEEE-Eec
Confidence 16999999999999999999999999999999999999999999999999999999755 466
No 3
>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}
Probab=100.00 E-value=1.6e-54 Score=351.33 Aligned_cols=132 Identities=24% Similarity=0.429 Sum_probs=125.1
Q ss_pred EEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCc
Q 027887 63 WAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141 (217)
Q Consensus 63 ~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y 141 (217)
++|++|+|+|++ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|+||+|++. +|
T Consensus 1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y 75 (134)
T 2p6h_A 1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PW 75 (134)
T ss_dssp CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SC
T ss_pred CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Cc
Confidence 378999999987 4999999999999998 999999999999999999999999 99999999999999999874 69
Q ss_pred eeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887 142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL 201 (217)
Q Consensus 142 ~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g 201 (217)
+|++| +|||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++.. +|
T Consensus 76 ~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i-~G 133 (134)
T 2p6h_A 76 KHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRERTVNLLY-LG 133 (134)
T ss_dssp GGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEEE-EE
T ss_pred cccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEECCCCCceEEEEEE-ec
Confidence 99998 999999999999999999999999999999999999999999999997554 66
No 4
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-54 Score=349.73 Aligned_cols=132 Identities=26% Similarity=0.449 Sum_probs=125.5
Q ss_pred CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 027887 61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (217)
Q Consensus 61 m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~ 139 (217)
|+++|++|+|+|++ ++++|||++|+++|+ |+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.
T Consensus 1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 73 (134)
T 1ve0_A 1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG-- 73 (134)
T ss_dssp CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence 89999999999987 499999999999996 89999999999999999999999 99999999999999999874
Q ss_pred CceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL 201 (217)
Q Consensus 140 ~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g 201 (217)
+|+|++| +|||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++.. +|
T Consensus 74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i-~G 133 (134)
T 1ve0_A 74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTRTVLVKS-MG 133 (134)
T ss_dssp CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEEE-EE
T ss_pred CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEECCCCCeeEEEEEE-ec
Confidence 5999999 999999999999999999999999999999999999999999999997554 66
No 5
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1
Probab=100.00 E-value=3.4e-54 Score=355.36 Aligned_cols=135 Identities=25% Similarity=0.457 Sum_probs=127.9
Q ss_pred CCeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 027887 60 NPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (217)
Q Consensus 60 ~m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~ 138 (217)
-|++|+++|+|+|++ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|++||+++|+||+|+++
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~- 87 (149)
T 1vph_A 12 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR- 87 (149)
T ss_dssp CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred eeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC-
Confidence 499999999999987 7999999999999998 999999999999999999999999 99999999999999999874
Q ss_pred CCceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCC-ceEEEEEEeec
Q 027887 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR-VKELHGCMLLL 201 (217)
Q Consensus 139 ~~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr-~R~v~v~~~~g 201 (217)
+|+|++| +|||+||+||+|+|+|++|||.||+|.|||||+||||||||+| +|+|++ .++|
T Consensus 88 -~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~dg~r~~R~v~v-~i~G 148 (149)
T 1vph_A 88 -SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITV-EILG 148 (149)
T ss_dssp -CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEE-EEEE
T ss_pred -CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCCCeEEEE-EEec
Confidence 5999988 9999999999999999999999999999999999999999998 788864 4466
No 6
>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A
Probab=100.00 E-value=2.6e-52 Score=342.48 Aligned_cols=127 Identities=33% Similarity=0.494 Sum_probs=120.0
Q ss_pred EEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcee
Q 027887 65 QKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143 (217)
Q Consensus 65 q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H 143 (217)
-++|+|+|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+||||+||+|++||+++|+||+|++. +|+|
T Consensus 16 ~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H 91 (144)
T 1vmh_A 16 VIEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKH 91 (144)
T ss_dssp -CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCC
T ss_pred cEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--Cccc
Confidence 3579999985 7999999999999998 999999999999999999999999999999999999999999874 6999
Q ss_pred CccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEE
Q 027887 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCM 198 (217)
Q Consensus 144 ~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~ 198 (217)
+ +|||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++..
T Consensus 92 ~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~R~v~v~i 143 (144)
T 1vmh_A 92 V---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKI 143 (144)
T ss_dssp T---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCSCEEEEEEEE
T ss_pred C---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEEE
Confidence 7 789999999999999999999999999999999999999999999998653
No 7
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=100.00 E-value=4.5e-52 Score=341.37 Aligned_cols=131 Identities=34% Similarity=0.477 Sum_probs=121.5
Q ss_pred EEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCce
Q 027887 64 AQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK 142 (217)
Q Consensus 64 ~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~ 142 (217)
..++|+|.|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+||||+||+|++||+++|+||||++. ..|+
T Consensus 12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~ 88 (145)
T 1vmf_A 12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR 88 (145)
T ss_dssp CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence 46899999985 7999999999999998 999999999999999999999999999999999999999999874 2699
Q ss_pred eCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCC-ceEEEEEEeec
Q 027887 143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR-VKELHGCMLLL 201 (217)
Q Consensus 143 H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr-~R~v~v~~~~g 201 (217)
| .|| ||+||+||+|+|+|++|||.||+|.|||||+|||||||+|| +|+|++. ++|
T Consensus 89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~~R~v~v~-i~G 144 (145)
T 1vmf_A 89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVK-LLT 144 (145)
T ss_dssp C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCCCSCEEEEEE-EEE
T ss_pred c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEECcCCCCCcEEEEE-Eec
Confidence 9 455 89999999999999999999999999999999999999999 8999755 466
No 8
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-50 Score=326.42 Aligned_cols=124 Identities=32% Similarity=0.521 Sum_probs=113.8
Q ss_pred EEEEecCCCCeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCceeCc
Q 027887 66 KTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL 145 (217)
Q Consensus 66 ~titv~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~ 145 (217)
.+|+|++++++++|||++|+++|+ . ++|+|+||++||||||+||||+||+|++||+++|+||+|+++ .+|+| .
T Consensus 5 ~~i~~~~~~~~~~dIT~~V~~~v~---~--~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~-~~y~H-~ 77 (129)
T 2cu5_A 5 VRLEVPTPEEGFVNITRKVEAALS---G--HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHR-PQDRH-L 77 (129)
T ss_dssp EEEEEEECSSEEEECHHHHHHTST---T--CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCC-TTCCC-T
T ss_pred EEEEEeCCCCeEEECHHHHHHHhh---h--cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC-CCcCc-C
Confidence 357788667899999999999996 2 999999999999999999999999999999999999999872 25999 4
Q ss_pred cCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEE
Q 027887 146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCM 198 (217)
Q Consensus 146 eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~ 198 (217)
|| ||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++..
T Consensus 78 eG--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i 128 (129)
T 2cu5_A 78 EG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRL 128 (129)
T ss_dssp TS--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSEEEEEEEEE
T ss_pred CC--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEEE
Confidence 55 8999999999999999999999999999999999999999999998653
No 9
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=21.59 E-value=26 Score=20.79 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=15.3
Q ss_pred EEEEecCCCCeEEeCcHHHHH
Q 027887 66 KTVTLPPLRRGCHLITPKIVK 86 (217)
Q Consensus 66 ~titv~T~~r~~~dIT~eV~~ 86 (217)
++|.++-...|--|||+||..
T Consensus 1 k~irirdpnqggkditeeims 21 (27)
T 4f02_C 1 KTIRIRDPNQGGKDITEEIMS 21 (27)
T ss_pred CcceecCccccchhhHHHHHh
Confidence 356777666778899998764
No 10
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=15.48 E-value=2.1e+02 Score=23.32 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=37.3
Q ss_pred CcHHHHHHHHhhccCcccceEEEEecccc---eEEEE--eecCCchhHHHHHHHH---hhhCCCCCCCCceeCccCCCCc
Q 027887 80 ITPKIVKEIAQDLSEFKCGLAHLFLLHTS---ASLTI--NENYDSDVRDDTETFL---NKIVPEGRSASWKHTLEGPDDM 151 (217)
Q Consensus 80 IT~eV~~~V~~~~SgIk~Giv~Vfv~HTT---AsLtI--nEn~DP~v~~Dl~~~L---~rLvP~~~~~~Y~H~~eG~dN~ 151 (217)
+|++|.+.|++ ++.|. ....--.. ..+.| -+..+..+.+-+..++ .+..|..+ ..|-.
T Consensus 104 vt~dv~~~v~~----~k~g~-~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~-g~~ik-------- 169 (189)
T 2ftc_A 104 IGRDIPKMLEL----FKNGH-EIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNL-GPFVV-------- 169 (189)
T ss_pred ccccHHHHHHH----Hhcce-EEEeccCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCchhc-CccEE--------
Confidence 56777777765 44443 33322211 11222 2222445555555544 45566654 23432
Q ss_pred chhhhhhccCceEEEEE
Q 027887 152 PAHIKSSMFGCTLTIPI 168 (217)
Q Consensus 152 ~AHlKssLlG~SltIPV 168 (217)
..||+|+ +|+++.|-+
T Consensus 170 ~v~lssT-mgp~i~i~~ 185 (189)
T 2ftc_A 170 RAFLRSS-TSEGLLLKI 185 (189)
T ss_pred EEEEECC-CCCCEEEeh
Confidence 2667766 788887754
Done!