Query 027888
Match_columns 217
No_of_seqs 117 out of 417
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1769 Ubiquitin-like protein 99.9 6.3E-26 1.4E-30 176.6 9.2 76 142-217 18-94 (99)
2 COG5227 SMT3 Ubiquitin-like pr 99.9 1.2E-22 2.6E-27 156.9 5.0 75 142-216 22-97 (103)
3 cd01763 Sumo Small ubiquitin-r 99.8 1.9E-20 4.1E-25 140.7 9.9 78 140-217 7-85 (87)
4 PF11976 Rad60-SLD: Ubiquitin- 99.8 8.1E-20 1.8E-24 130.7 7.4 70 145-214 1-72 (72)
5 cd01806 Nedd8 Nebb8-like ubiq 98.9 7.4E-09 1.6E-13 73.8 8.1 71 146-216 2-73 (76)
6 PF00240 ubiquitin: Ubiquitin 98.6 1.9E-07 4.2E-12 65.7 7.8 65 153-217 4-69 (69)
7 cd01812 BAG1_N Ubiquitin-like 98.6 2.1E-07 4.5E-12 65.8 7.7 70 145-214 1-70 (71)
8 cd01809 Scythe_N Ubiquitin-lik 98.6 4.2E-07 9.2E-12 64.1 7.8 70 145-214 1-71 (72)
9 cd01807 GDX_N ubiquitin-like d 98.5 9.3E-07 2E-11 63.9 7.9 71 146-216 2-73 (74)
10 cd01805 RAD23_N Ubiquitin-like 98.4 1.3E-06 2.7E-11 62.9 8.1 71 146-216 2-75 (77)
11 smart00213 UBQ Ubiquitin homol 98.4 1.1E-06 2.4E-11 59.9 6.7 63 146-208 2-64 (64)
12 cd01803 Ubiquitin Ubiquitin. U 98.4 1.7E-06 3.6E-11 61.6 7.9 71 146-216 2-73 (76)
13 PTZ00044 ubiquitin; Provisiona 98.3 3.1E-06 6.7E-11 60.9 7.8 70 146-215 2-72 (76)
14 cd01798 parkin_N amino-termina 98.2 5.1E-06 1.1E-10 59.3 7.2 66 149-214 3-69 (70)
15 cd01808 hPLIC_N Ubiquitin-like 98.2 6.4E-06 1.4E-10 59.0 7.7 69 146-214 2-70 (71)
16 cd01791 Ubl5 UBL5 ubiquitin-li 98.2 8.8E-06 1.9E-10 59.8 8.1 70 145-214 2-72 (73)
17 cd01769 UBL Ubiquitin-like dom 98.2 7.7E-06 1.7E-10 56.3 7.4 65 150-214 3-68 (69)
18 cd01804 midnolin_N Ubiquitin-l 98.2 1.3E-05 2.7E-10 59.1 8.5 71 145-216 2-73 (78)
19 cd01792 ISG15_repeat1 ISG15 ub 98.2 8.6E-06 1.9E-10 60.0 7.5 72 145-216 3-77 (80)
20 cd01810 ISG15_repeat2 ISG15 ub 98.2 9.1E-06 2E-10 58.8 7.3 68 148-215 2-70 (74)
21 cd01793 Fubi Fubi ubiquitin-li 98.1 2.3E-05 5E-10 56.7 7.9 68 147-215 3-70 (74)
22 cd01797 NIRF_N amino-terminal 98.0 2.2E-05 4.8E-10 58.2 7.2 71 146-216 2-75 (78)
23 cd01802 AN1_N ubiquitin-like d 98.0 4.1E-05 8.8E-10 59.8 8.5 74 142-215 25-99 (103)
24 cd01794 DC_UbP_C dendritic cel 98.0 3.5E-05 7.6E-10 56.0 7.0 67 148-214 2-69 (70)
25 cd01796 DDI1_N DNA damage indu 97.8 8.2E-05 1.8E-09 53.8 7.1 59 155-213 11-70 (71)
26 cd01800 SF3a120_C Ubiquitin-li 97.8 0.00011 2.3E-09 53.6 6.9 61 156-216 10-70 (76)
27 PF11543 UN_NPL4: Nuclear pore 97.7 0.00013 2.9E-09 54.7 6.1 71 143-213 3-78 (80)
28 cd00196 UBQ Ubiquitin-like pro 97.5 0.00059 1.3E-08 42.9 6.8 62 153-214 6-68 (69)
29 TIGR00601 rad23 UV excision re 97.5 0.00038 8.1E-09 65.7 7.9 71 146-216 2-76 (378)
30 cd01813 UBP_N UBP ubiquitin pr 97.5 0.00083 1.8E-08 49.2 7.9 69 145-213 1-72 (74)
31 cd01799 Hoil1_N Ubiquitin-like 97.4 0.0006 1.3E-08 50.3 6.7 60 154-214 13-74 (75)
32 KOG0010 Ubiquitin-like protein 97.0 0.002 4.4E-08 62.7 6.9 74 143-216 14-87 (493)
33 cd01789 Alp11_N Ubiquitin-like 96.6 0.022 4.7E-07 42.6 8.8 70 145-214 2-80 (84)
34 cd01790 Herp_N Homocysteine-re 96.4 0.017 3.6E-07 43.6 6.9 69 145-213 2-77 (79)
35 cd01815 BMSC_UbP_N Ubiquitin-l 96.3 0.0091 2E-07 44.8 5.1 53 163-215 20-75 (75)
36 PF14560 Ubiquitin_2: Ubiquiti 96.2 0.029 6.2E-07 41.7 7.5 70 145-214 2-82 (87)
37 KOG0005 Ubiquitin-like protein 96.1 0.0092 2E-07 43.8 4.2 66 147-212 3-69 (70)
38 PF11470 TUG-UBL1: GLUT4 regul 95.2 0.048 1E-06 39.7 5.1 61 151-211 3-64 (65)
39 cd01801 Tsc13_N Ubiquitin-like 95.1 0.09 1.9E-06 38.3 6.2 52 161-212 20-74 (77)
40 PLN02560 enoyl-CoA reductase 95.0 0.092 2E-06 48.4 7.5 68 146-213 2-81 (308)
41 PF08817 YukD: WXG100 protein 95.0 0.057 1.2E-06 39.6 5.0 69 144-212 2-78 (79)
42 cd01814 NTGP5 Ubiquitin-like N 94.7 0.098 2.1E-06 42.2 6.1 66 143-208 3-77 (113)
43 PRK08364 sulfur carrier protei 94.4 0.34 7.3E-06 35.0 7.7 61 145-214 5-65 (70)
44 PF00789 UBX: UBX domain; Int 93.2 0.82 1.8E-05 33.1 8.1 72 141-212 3-80 (82)
45 KOG0011 Nucleotide excision re 93.2 0.26 5.6E-06 46.3 6.6 73 144-217 2-76 (340)
46 PF13881 Rad60-SLD_2: Ubiquiti 92.8 1.2 2.6E-05 35.5 9.0 67 143-209 1-76 (111)
47 KOG0003 Ubiquitin/60s ribosoma 91.6 0.072 1.6E-06 43.2 0.7 62 153-214 10-71 (128)
48 PF00564 PB1: PB1 domain; Int 89.7 2.6 5.6E-05 30.2 7.5 51 144-194 1-55 (84)
49 smart00666 PB1 PB1 domain. Pho 89.2 2.1 4.6E-05 30.7 6.7 45 145-189 2-46 (81)
50 cd01795 USP48_C USP ubiquitin- 88.9 1.7 3.6E-05 34.9 6.4 62 154-215 15-77 (107)
51 cd06408 PB1_NoxR The PB1 domai 88.1 3 6.4E-05 32.2 7.1 50 144-194 2-53 (86)
52 cd05992 PB1 The PB1 domain is 86.9 2.7 6E-05 29.9 6.1 50 145-194 1-54 (81)
53 cd00754 MoaD Ubiquitin domain 86.5 3.1 6.8E-05 29.5 6.2 54 156-214 18-75 (80)
54 PF03671 Ufm1: Ubiquitin fold 85.5 2.3 4.9E-05 32.2 5.1 68 144-211 2-74 (76)
55 KOG0006 E3 ubiquitin-protein l 85.4 2.3 4.9E-05 40.5 6.2 50 156-205 16-67 (446)
56 cd01774 Faf1_like2_UBX Faf1 ik 85.3 9.8 0.00021 28.7 8.6 71 142-213 2-83 (85)
57 cd06407 PB1_NLP A PB1 domain i 85.2 3.6 7.9E-05 31.0 6.2 50 145-194 1-54 (82)
58 PRK06437 hypothetical protein; 84.3 6.8 0.00015 28.1 7.0 50 156-214 13-62 (67)
59 cd06396 PB1_NBR1 The PB1 domai 83.9 4.4 9.6E-05 30.9 6.1 48 145-194 1-53 (81)
60 cd06406 PB1_P67 A PB1 domain i 83.2 3.8 8.3E-05 31.2 5.5 45 145-190 3-47 (80)
61 cd06409 PB1_MUG70 The MUG70 pr 83.2 3.4 7.5E-05 31.7 5.3 49 146-194 2-57 (86)
62 PRK07440 hypothetical protein; 83.2 7.1 0.00015 28.3 6.8 63 143-214 3-65 (70)
63 cd01766 Ufm1 Urm1-like ubiquit 81.5 7.6 0.00017 29.7 6.5 59 156-214 18-77 (82)
64 smart00166 UBX Domain present 81.4 13 0.00027 27.1 7.6 70 143-212 3-78 (80)
65 PF12436 USP7_ICP0_bdg: ICP0-b 81.1 1.2 2.6E-05 39.5 2.5 75 141-215 65-152 (249)
66 COG5417 Uncharacterized small 80.0 11 0.00024 28.8 7.0 71 142-212 2-80 (81)
67 cd01767 UBX UBX (ubiquitin reg 79.7 18 0.00038 26.0 7.9 66 144-210 2-73 (77)
68 KOG4248 Ubiquitin-like protein 79.1 4 8.6E-05 43.8 5.8 68 146-214 4-72 (1143)
69 smart00455 RBD Raf-like Ras-bi 78.4 13 0.00029 27.0 6.9 43 148-190 3-46 (70)
70 KOG3439 Protein conjugation fa 77.4 10 0.00023 30.8 6.5 64 141-204 27-97 (116)
71 TIGR01687 moaD_arch MoaD famil 77.2 11 0.00025 27.5 6.3 55 156-214 18-83 (88)
72 PRK06944 sulfur carrier protei 77.0 12 0.00026 25.8 6.1 52 157-214 9-60 (65)
73 KOG0001 Ubiquitin and ubiquiti 76.7 18 0.00039 23.6 8.4 61 155-215 11-71 (75)
74 PF10406 TAF8_C: Transcription 76.5 2.8 6.1E-05 29.0 2.7 10 68-77 5-15 (51)
75 PRK05659 sulfur carrier protei 76.4 10 0.00022 26.3 5.7 53 157-214 9-61 (66)
76 cd01760 RBD Ubiquitin-like dom 74.6 20 0.00043 26.5 7.0 66 147-214 2-71 (72)
77 cd01770 p47_UBX p47-like ubiqu 74.5 29 0.00064 25.6 7.9 67 144-210 4-75 (79)
78 TIGR01683 thiS thiamine biosyn 73.0 14 0.00031 25.7 5.7 53 157-214 7-59 (64)
79 cd00565 ThiS ThiaminS ubiquiti 72.8 12 0.00025 26.2 5.2 53 157-214 8-60 (65)
80 PF10302 DUF2407: DUF2407 ubiq 72.1 12 0.00027 29.0 5.6 53 144-196 2-58 (97)
81 TIGR01682 moaD molybdopterin c 71.7 19 0.00042 25.9 6.3 54 156-214 18-75 (80)
82 PRK05863 sulfur carrier protei 70.1 15 0.00032 25.9 5.3 52 157-214 9-60 (65)
83 cd06398 PB1_Joka2 The PB1 doma 67.8 27 0.00059 26.8 6.6 50 145-194 1-59 (91)
84 cd01771 Faf1_UBX Faf1 UBX doma 67.7 44 0.00095 24.8 7.6 69 143-212 3-77 (80)
85 PLN02799 Molybdopterin synthas 67.1 16 0.00034 26.5 5.0 54 156-214 21-77 (82)
86 PRK06488 sulfur carrier protei 65.5 32 0.0007 24.0 6.2 47 163-214 14-60 (65)
87 PF04110 APG12: Ubiquitin-like 65.0 15 0.00033 28.3 4.8 59 144-202 1-66 (87)
88 PRK08053 sulfur carrier protei 62.2 35 0.00076 24.0 5.9 53 157-214 9-61 (66)
89 PF02597 ThiS: ThiS family; I 62.2 16 0.00035 25.5 4.2 58 155-214 13-72 (77)
90 PRK06083 sulfur carrier protei 60.8 55 0.0012 24.7 7.1 53 157-214 27-79 (84)
91 smart00295 B41 Band 4.1 homolo 59.7 41 0.00088 27.3 6.7 46 143-188 2-49 (207)
92 COG5100 NPL4 Nuclear pore prot 58.0 38 0.00082 33.5 7.0 69 146-214 2-78 (571)
93 PF10231 DUF2315: Uncharacteri 54.5 48 0.001 27.2 6.2 50 68-117 3-63 (126)
94 PF08825 E2_bind: E2 binding d 54.3 10 0.00022 28.9 2.1 55 158-213 1-69 (84)
95 cd08049 TAF8 TATA Binding Prot 53.1 19 0.00041 24.9 3.2 10 68-77 5-15 (54)
96 PF02196 RBD: Raf-like Ras-bin 52.2 61 0.0013 23.5 5.9 44 147-190 3-47 (71)
97 PRK01777 hypothetical protein; 52.2 1.1E+02 0.0024 23.7 7.7 66 144-214 3-75 (95)
98 cd01811 OASL_repeat1 2'-5' oli 51.9 1.1E+02 0.0023 23.6 7.2 68 145-213 1-74 (80)
99 KOG3493 Ubiquitin-like protein 51.2 8.2 0.00018 28.9 1.1 69 146-214 3-72 (73)
100 KOG1363 Predicted regulator of 51.0 1.3E+02 0.0029 29.6 9.7 49 139-188 378-427 (460)
101 KOG3483 Uncharacterized conser 50.8 52 0.0011 25.5 5.4 73 142-214 11-88 (94)
102 TIGR02958 sec_mycoba_snm4 secr 50.3 92 0.002 30.3 8.4 70 145-214 3-79 (452)
103 cd01773 Faf1_like1_UBX Faf1 ik 49.7 1.1E+02 0.0024 23.2 8.2 71 142-213 3-79 (82)
104 PRK07696 sulfur carrier protei 49.5 44 0.00095 23.8 4.7 52 158-214 10-62 (67)
105 PF00788 RA: Ras association ( 48.8 76 0.0017 22.6 6.0 43 145-187 3-52 (93)
106 cd01612 APG12_C Ubiquitin-like 47.4 1E+02 0.0022 23.4 6.6 58 144-201 1-65 (87)
107 KOG4094 Uncharacterized conser 46.5 59 0.0013 28.0 5.7 53 66-118 49-112 (178)
108 PF09379 FERM_N: FERM N-termin 45.9 83 0.0018 22.1 5.7 39 150-188 2-42 (80)
109 cd01768 RA RA (Ras-associating 45.1 80 0.0017 22.7 5.6 55 147-201 2-68 (87)
110 cd06404 PB1_aPKC PB1 domain is 44.9 97 0.0021 23.9 6.2 53 145-197 1-57 (83)
111 COG2104 ThiS Sulfur transfer p 44.3 59 0.0013 23.7 4.7 53 157-214 11-63 (68)
112 cd01818 TIAM1_RBD Ubiquitin do 44.0 75 0.0016 24.2 5.3 41 149-189 4-47 (77)
113 cd01777 SNX27_RA Ubiquitin dom 40.8 43 0.00092 26.0 3.7 39 145-183 2-41 (87)
114 PRK11130 moaD molybdopterin sy 40.2 1.1E+02 0.0025 22.1 5.8 46 164-214 26-76 (81)
115 PF06234 TmoB: Toluene-4-monoo 39.8 1.8E+02 0.0038 22.6 7.5 60 156-215 17-84 (85)
116 PF03607 DCX: Doublecortin; I 39.0 55 0.0012 22.9 3.8 46 161-212 6-53 (60)
117 cd01788 ElonginB Ubiquitin-lik 38.4 96 0.0021 25.4 5.5 60 145-204 3-62 (119)
118 cd01772 SAKS1_UBX SAKS1-like U 36.7 1.7E+02 0.0036 21.3 7.2 68 144-212 4-77 (79)
119 PRK11840 bifunctional sulfur c 35.5 1E+02 0.0022 29.1 6.1 53 157-214 9-61 (326)
120 PF15044 CLU_N: Mitochondrial 35.5 1.1E+02 0.0023 22.6 5.0 55 161-215 2-58 (76)
121 PF14451 Ub-Mut7C: Mut7-C ubiq 33.0 71 0.0015 24.0 3.8 52 155-215 24-76 (81)
122 PRK11377 dihydroxyacetone kina 32.6 1.3E+02 0.0028 29.6 6.4 63 143-215 156-220 (473)
123 PHA01623 hypothetical protein 31.3 36 0.00078 23.9 1.8 28 155-182 13-40 (56)
124 smart00314 RA Ras association 30.7 2.1E+02 0.0045 20.7 6.0 61 146-206 4-75 (90)
125 cd02790 MopB_CT_Formate-Dh_H F 30.6 25 0.00054 26.3 1.0 19 196-214 41-59 (116)
126 cd00508 MopB_CT_Fdh-Nap-like T 30.5 25 0.00054 26.4 0.9 18 197-214 42-59 (120)
127 PF01982 CTP-dep_RFKase: Domai 30.1 30 0.00064 28.3 1.4 14 201-214 108-121 (121)
128 KOG4225 Sorbin and SH3 domain- 29.5 31 0.00068 34.1 1.6 20 196-215 443-462 (489)
129 PF13019 Telomere_Sde2: Telome 29.5 2.7E+02 0.0058 23.9 7.1 55 145-199 1-63 (162)
130 PF11620 GABP-alpha: GA-bindin 29.1 1.5E+02 0.0033 23.1 5.0 58 156-213 5-62 (88)
131 cd02792 MopB_CT_Formate-Dh-Na- 28.7 27 0.00059 26.4 0.9 19 196-214 41-59 (122)
132 PTZ00380 microtubule-associate 28.7 1.7E+02 0.0036 24.0 5.5 44 156-200 42-87 (121)
133 cd06397 PB1_UP1 Uncharacterize 28.4 1.9E+02 0.0042 22.3 5.4 49 146-194 2-53 (82)
134 PF10198 Ada3: Histone acetylt 28.0 2.3E+02 0.005 23.1 6.2 20 83-102 34-53 (131)
135 PF12436 USP7_ICP0_bdg: ICP0-b 27.7 1.8E+02 0.0038 25.8 6.0 45 144-188 176-224 (249)
136 cd02786 MopB_CT_3 The MopB_CT_ 26.6 26 0.00057 26.4 0.5 19 196-214 37-55 (116)
137 PF04785 Rhabdo_M2: Rhabdoviru 26.4 19 0.00041 31.0 -0.4 14 64-77 27-40 (202)
138 PF01568 Molydop_binding: Moly 25.6 28 0.00061 25.9 0.5 19 197-215 37-55 (110)
139 PRK14165 winged helix-turn-hel 25.5 49 0.0011 29.3 2.0 16 201-216 202-217 (217)
140 COG3105 Uncharacterized protei 25.5 1.7E+02 0.0037 24.5 5.1 41 90-131 49-90 (138)
141 cd06411 PB1_p51 The PB1 domain 24.1 1.6E+02 0.0036 22.3 4.4 34 156-189 9-42 (78)
142 cd02791 MopB_CT_Nitrate-R-NapA 23.9 32 0.00069 26.0 0.5 19 196-214 41-59 (122)
143 PRK14132 riboflavin kinase; Pr 23.5 53 0.0011 27.0 1.7 15 200-214 112-126 (126)
144 cd02794 MopB_CT_DmsA-EC The Mo 23.1 41 0.00089 25.8 1.0 20 196-215 36-55 (121)
145 TIGR01003 PTS_HPr_family Phosp 22.9 97 0.0021 22.8 2.9 60 146-215 5-66 (82)
146 cd02783 MopB_CT_2 The MopB_CT_ 22.7 41 0.00088 27.5 0.9 19 196-214 38-56 (156)
147 cd02787 MopB_CT_ydeP The MopB_ 22.7 40 0.00087 25.5 0.8 20 196-215 37-56 (112)
148 KOG0004 Ubiquitin/40S ribosoma 22.2 1.3E+02 0.0028 25.7 3.9 61 155-215 12-72 (156)
149 TIGR02988 YaaA_near_RecF S4 do 22.1 25 0.00054 24.1 -0.4 50 162-212 4-58 (59)
150 KOG2982 Uncharacterized conser 21.5 2.4E+02 0.0052 27.4 5.8 70 146-215 338-417 (418)
151 PRK10850 PTS system phosphohis 21.5 1E+02 0.0022 23.2 2.8 60 146-215 5-66 (85)
152 cd02785 MopB_CT_4 The MopB_CT_ 21.4 38 0.00082 26.1 0.5 19 196-214 38-56 (124)
153 PF14782 BBS2_C: Ciliary BBSom 21.1 4.8E+02 0.01 25.5 7.9 59 50-120 26-88 (431)
154 PF12754 Blt1: Cell-cycle cont 21.0 32 0.0007 32.3 0.0 75 130-205 65-160 (309)
155 cd02778 MopB_CT_Thiosulfate-R- 21.0 40 0.00086 25.6 0.5 19 196-214 36-54 (123)
156 PRK13782 phosphocarrier protei 21.0 1.2E+02 0.0025 22.3 3.0 60 146-215 5-66 (82)
157 cd02779 MopB_CT_Arsenite-Ox Th 20.8 48 0.001 25.3 0.9 19 196-214 39-57 (115)
158 cd06410 PB1_UP2 Uncharacterize 20.7 3.1E+02 0.0066 21.3 5.4 45 149-194 17-64 (97)
159 cd02781 MopB_CT_Acetylene-hydr 20.7 49 0.0011 25.4 1.0 19 196-214 39-57 (130)
160 cd01611 GABARAP Ubiquitin doma 20.6 1.7E+02 0.0036 23.3 4.0 47 156-202 43-90 (112)
161 PF10533 Plant_zn_clust: Plant 20.4 46 0.00099 23.2 0.6 12 32-43 19-30 (47)
162 cd02777 MopB_CT_DMSOR-like The 20.4 49 0.0011 25.6 0.9 18 197-214 41-58 (127)
163 COG5636 Uncharacterized conser 20.1 89 0.0019 28.6 2.6 36 66-101 112-157 (284)
No 1
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.3e-26 Score=176.56 Aligned_cols=76 Identities=34% Similarity=0.590 Sum_probs=73.5
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
..||+|+|.++++. ++|+|+++|+|.|||++||++.|++.++|||+|||.||..++||.+|+|||||+|+|+..|.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQT 94 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecc
Confidence 68999999998886 69999999999999999999999999999999999999999999999999999999999984
No 2
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-22 Score=156.87 Aligned_cols=75 Identities=31% Similarity=0.565 Sum_probs=72.6
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..||+|+|.+|++. +.|+||++|+|+|||++||++.|..++++||+|||.||..++||.+|+|||||+|+|+.+|
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQ 97 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQ 97 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHH
Confidence 67999999999985 8999999999999999999999999999999999999999999999999999999999887
No 3
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.84 E-value=1.9e-20 Score=140.73 Aligned_cols=78 Identities=28% Similarity=0.491 Sum_probs=74.4
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
+.+.+|+|+|++.+|. +.|+|+++++|++||++||++.|++++++||+|+|.+|.++.||.+|+|+|||+|+|+++|.
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4789999999999886 79999999999999999999999999999999999999999999999999999999999873
No 4
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.81 E-value=8.1e-20 Score=130.71 Aligned_cols=70 Identities=29% Similarity=0.605 Sum_probs=65.1
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
|+|+|++++|. +.|+|+++++|++||++||++.|++. ++++|+|||++|++++||+++||+|||+|+|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999986 79999999999999999999999999 999999999999999999999999999999985
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.91 E-value=7.4e-09 Score=73.83 Aligned_cols=71 Identities=14% Similarity=0.318 Sum_probs=65.8
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.++|.++.+.+.|...++++.|++++..||+|+|..+..+.|..++++++|++|.+..++
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 5677777775 7899999999999999999999999999999999999999999999999999999998865
No 6
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.63 E-value=1.9e-07 Score=65.73 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=61.4
Q ss_pred Cce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 153 GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 153 dg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
+|. +.+.|..+++...|.+..++..|++++.++|+|+|+.|..+.|-.++|+.+|++|.++++|+
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 454 78999999999999999999999999999999999999999999999999999999999874
No 7
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.62 E-value=2.1e-07 Score=65.81 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=63.4
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
|+|+|...+....+.+.++.+...|+...+++.|++++..+++|+|..+..+.|..++|+.+|++|.++.
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 5777777643467999999999999999999999999999999999999999999999999999998864
No 8
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.55 E-value=4.2e-07 Score=64.08 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=64.1
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
|+|.|...+|. +.+.+.++.+...|...++++.|++++..+++|+|..+..+.|..++|+.+|.+|.+..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 46777777775 68999999999999999999999999999999999999999999999999999998764
No 9
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.47 E-value=9.3e-07 Score=63.91 Aligned_cols=71 Identities=13% Similarity=0.270 Sum_probs=64.1
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....+++.|++....+++|+|+.+..+.|..++++.+|++|.++..+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 3555555665 6899999999999999999999999999999999999999999999999999999998765
No 10
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.44 E-value=1.3e-06 Score=62.94 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=64.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCC--CCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.+..+++...|...++++.|+ +++..+++|+|..|..+.|-.++|+.+|++|.+++++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 3555556665 679999999999999999999999 9999999999999999999999999999999999876
No 11
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.41 E-value=1.1e-06 Score=59.93 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=56.8
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCc
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDND 208 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGD 208 (217)
.|.|+..++...+.|..+++...|...++.+.|++++.++++|+|..|..+.|..++|+.+|+
T Consensus 2 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 2 ELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred EEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 456666564578999999999999999999999999999999999999999999999999985
No 12
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.41 E-value=1.7e-06 Score=61.64 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=64.6
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.+.++.+...|...++++.|++++..+|+|+|..+..+.|-.++++.+|++|.+..+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 4666676765 6899999999999999999999999999999999999999999999999999999998764
No 13
>PTZ00044 ubiquitin; Provisional
Probab=98.33 E-value=3.1e-06 Score=60.88 Aligned_cols=70 Identities=11% Similarity=0.266 Sum_probs=63.9
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.|.|+..+|. +.+.+.++++...|....+++.|+++...+++|+|..+..+.|-.++++.+|.+|.+.+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 4566666765 689999999999999999999999999999999999999999999999999999999875
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.24 E-value=5.1e-06 Score=59.33 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=60.0
Q ss_pred EEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 149 IQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 149 V~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
|..-+|. +.+.+.++++...|....+++.|++....+++|.|..|..+.|..++++.+|.+|.+..
T Consensus 3 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 3 VRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4444554 68999999999999999999999999999999999999999999999999999998764
No 15
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.24 E-value=6.4e-06 Score=59.05 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=62.0
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+|.|....|...+.|.++.+...|....+++.|++...+++.|.|..|..+.|-.++|+++|.+|.+..
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 455556566557999999999999999999999999999999999999999999999999999998875
No 16
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.21 E-value=8.8e-06 Score=59.83 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=64.0
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.|.|.+..|. +.+.+.++.+...|....+++.|++++..||.|.|..+..+.|-.+.|+.+|.+|..+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 67888887665 67899999999999999999999999999999999999999999999999999998874
No 17
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.21 E-value=7.7e-06 Score=56.32 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=58.8
Q ss_pred EeCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 150 QDKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 150 ~~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...+| ...+.+..++++..|...++++.|++.+.++|+|+|..+..+.|..++++.+|+.|.|+.
T Consensus 3 ~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 3 KTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred EccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 33444 468999999999999999999999999999999999999999999999999999999875
No 18
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.19 E-value=1.3e-05 Score=59.09 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=63.9
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
++|.|....|. ..+.|.++.+...|.+..+++.|+++...||.|.|..+..+ |-.++|+++|++|.++..+
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 46777776665 68999999999999999999999999999999999999988 9999999999999998764
No 19
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.18 E-value=8.6e-06 Score=59.97 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=65.2
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEE--EECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVF--CFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF--~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.|.|...+|. +.+.|.++.+...|....+++.|++++..|| .|+|..|..+.|-.++|+.+|++|.+++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 67777777665 6789999999999999999999999999999 889999999999999999999999998873
No 20
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.17 E-value=9.1e-06 Score=58.80 Aligned_cols=68 Identities=9% Similarity=0.219 Sum_probs=62.0
Q ss_pred EEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 148 SIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 148 kV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.|....|. ..+.|.++.+...|....++..|++....+++|+|+.|..+.|..++|+.+|++|.++..
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 45566665 689999999999999999999999999999999999999999999999999999998865
No 21
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.08 E-value=2.3e-05 Score=56.70 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=61.1
Q ss_pred EEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 147 IkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
|.|+.. ....+.|.++++.+.|....+++.|++....+++|.|+.|..+.|..++++.+|.+|.+...
T Consensus 3 i~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 3 LFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred EEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 445543 34689999999999999999999999999999999999999999999999999999998764
No 22
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.03 E-value=2.2e-05 Score=58.16 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=62.7
Q ss_pred EEEEEeCCce--EEEE-EcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL--KQFR-VYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~--v~Fr-Ik~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|..-+|. +.+. +.++.+.+.|....+++.|++....|++|.|+.+..+.|-.++|+.+|++|.+++++
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 3555555664 3574 789999999999999999999999999999999999999999999999999999876
No 23
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.00 E-value=4.1e-05 Score=59.79 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=67.0
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
...+.|.|+..+|. +.+.|.++++...|....+++.|++....+++|.|+.|..+.|-.++++.+|++|.+.+.
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 34577777777775 689999999999999999999999999999999999999999999999999999999865
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=97.96 E-value=3.5e-05 Score=55.99 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=61.7
Q ss_pred EEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 148 SIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 148 kV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+|+..+|. +.+.|.++++...|...-+++.|++....+++|.|+.+..+.|..+.++.+|.+|.|.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 55666665 78999999999999999999999999999999999999999999999999999999976
No 25
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=97.83 E-value=8.2e-05 Score=53.75 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=54.0
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEE
Q 027888 155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVH 213 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~ 213 (217)
.+.+.|.++.+.+.|....+++.|++....+++|+|+.|..+ .|-+++|+.+|++|-+.
T Consensus 11 ~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 11 TFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred EEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 468999999999999999999999999999999999999876 57789999999998764
No 26
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=97.77 E-value=0.00011 Score=53.60 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=57.8
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.+.+.++++...|........|++++..+++|.|..+..+.|-.++++.+|++|.++.+.
T Consensus 10 ~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 10 LNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 6799999999999999999999999999999999999999999999999999999998764
No 27
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.67 E-value=0.00013 Score=54.71 Aligned_cols=71 Identities=14% Similarity=0.359 Sum_probs=45.8
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC---Cccc--CCCCCccccCCCCCcEEEEE
Q 027888 143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD---GDKI--GPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD---G~rI--~~~~TP~sLgMEDGDiIDV~ 213 (217)
..+.|+|++++|...+.+.++.++..|++..++.++++..++.++.+ +..| ..+.|..+|||..||+|-+.
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 56889999999988899999999999999999999999888877553 3345 46889999999999998653
No 28
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.51 E-value=0.00059 Score=42.91 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=56.2
Q ss_pred Cce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 153 GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 153 dg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
++. +.+.+...++++.|+...+.++|.+++.++|+++|..+....+....++.+|+.|.+..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 443 68889999999999999999999999999999999999998888899999999998864
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.00038 Score=65.71 Aligned_cols=71 Identities=10% Similarity=0.187 Sum_probs=63.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcC---CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVN---LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~g---l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+|.|+.-.|. +.+.|..+.+...|+...+...| ++....+|+|.|+.|..+.|-.++++.+|++|-+++.+
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 4555555554 67899999999999999999998 88999999999999999999999999999999999875
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=97.46 E-value=0.00083 Score=49.24 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=61.5
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCcccCCCCCccccCCCCCcEEEEE
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
|+|.|...+....+.+..++++..|.+.-++..|+++...+++| .|..+..+.|-.++++.+|+.|-++
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 45666666666789999999999999999999999999999996 8999999999999999999999876
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=97.42 E-value=0.0006 Score=50.31 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=54.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC-CCCCccccCCC-CCcEEEEEe
Q 027888 154 GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG-PEATPASLEME-DNDIIEVHT 214 (217)
Q Consensus 154 g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~-~~~TP~sLgME-DGDiIDV~~ 214 (217)
+.+.+.+.++.+.+.|...-+.+.|+++...|+ |+|.++. .+.|-.++|++ +||++-+++
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 457899999999999999999999999999999 9999996 66899999999 889998775
No 32
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.95 E-value=0.002 Score=62.66 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=69.4
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..|.|+|.+.+....|.|..+....-|.+.-+.+++++.+.++++|.|+.|.+.+|-...|+.||=+|.+.++.
T Consensus 14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 56889999888777899999999999999999999999999999999999999999999999999999988863
No 33
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=96.61 E-value=0.022 Score=42.64 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=57.1
Q ss_pred EEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEE-EECCcc-----c-CCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVF-CFDGDK-----I-GPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF-~FDG~r-----I-~~~~TP~sLgMEDGDiIDV~~ 214 (217)
|+|.|.+... . ...++.+..+...|...-....|+++...|+ +|+|.. + .+..|-.+++++||.+|.|.-
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 4555555432 2 5788999999999999999999999999999 588883 4 467789999999999998863
No 34
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=96.36 E-value=0.017 Score=43.62 Aligned_cols=69 Identities=6% Similarity=0.091 Sum_probs=58.8
Q ss_pred EEEEEEeCCce-EEEEE--cCCChHHHHHHHHHhhcC--CCCcceEEEECCcccCCCCCccccC--CCCCcEEEEE
Q 027888 145 IVVSIQDKGGL-KQFRV--YADDKFERLFKMYADKVN--LDQENLVFCFDGDKIGPEATPASLE--MEDNDIIEVH 213 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrI--k~tT~L~KLf~aYae~~g--l~~~slrF~FDG~rI~~~~TP~sLg--MEDGDiIDV~ 213 (217)
|+|.|.+.++. ..|.| ..+.+...|.+.-++..+ .++...|+.|.|+-|..++|-.+.. +.+|-+|...
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 78889887775 35655 899999999999998875 3469999999999999999999996 9999988653
No 35
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=96.31 E-value=0.0091 Score=44.79 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHhhc--CC-CCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 163 DDKFERLFKMYADKV--NL-DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 163 tT~L~KLf~aYae~~--gl-~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
+++...|....+++. |+ +++..|+.|.|+.+..+.|-.+.||.+|.+|.+..+
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 467788999999996 46 489999999999999999999999999999988753
No 36
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.22 E-value=0.029 Score=41.71 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=56.8
Q ss_pred EEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC----Cccc----CCCCCccccCCCCCcEEEEE
Q 027888 145 IVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD----GDKI----GPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 145 ItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD----G~rI----~~~~TP~sLgMEDGDiIDV~ 213 (217)
|+|.|.+... ....++..+.++..|...-...+|++++.+++.+- |..+ .+..|-.++|+.||++|.|.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6778877665 46899999999999999999999999999888875 3333 35778899999999999986
Q ss_pred e
Q 027888 214 T 214 (217)
Q Consensus 214 ~ 214 (217)
-
T Consensus 82 D 82 (87)
T PF14560_consen 82 D 82 (87)
T ss_dssp E
T ss_pred e
Confidence 3
No 37
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0092 Score=43.79 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=59.3
Q ss_pred EEEEeCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEE
Q 027888 147 VSIQDKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 147 IkV~~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
|+|+.-.| ++.+-|-++++.+++.+..-++.|+++..-|+.|-|.....+.|+++..++-|-++..
T Consensus 3 iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHL 69 (70)
T ss_pred eeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEee
Confidence 55555444 5899999999999999999999999999999999999999999999999999988753
No 38
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.21 E-value=0.048 Score=39.72 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=42.5
Q ss_pred eCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888 151 DKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIE 211 (217)
Q Consensus 151 ~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID 211 (217)
..++ ...++|.+.++|..+.+.-|+++|++.....+.|++..|..+.+---.||-+|-..+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEe
Confidence 3454 478999999999999999999999999999999999999888877777777776554
No 39
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=95.05 E-value=0.09 Score=38.33 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=44.3
Q ss_pred cCCChHHHHHHHHHhhcCC-CCcceEEE--ECCcccCCCCCccccCCCCCcEEEE
Q 027888 161 YADDKFERLFKMYADKVNL-DQENLVFC--FDGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 161 k~tT~L~KLf~aYae~~gl-~~~slrF~--FDG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
..+.+...|..+++++.+. +++..|+. +.|..|..+.|-.++|+.+|.+|.|
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4678899999999998764 67776665 7899999999999999999998876
No 40
>PLN02560 enoyl-CoA reductase
Probab=95.00 E-value=0.092 Score=48.39 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=55.3
Q ss_pred EEEEEeCCce-E---EEEEcCCChHHHHHHHHHhhcCC-CCcceEEEE---CCc----ccCCCCCccccCCCCCcEEEEE
Q 027888 146 VVSIQDKGGL-K---QFRVYADDKFERLFKMYADKVNL-DQENLVFCF---DGD----KIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 146 tIkV~~qdg~-v---~FrIk~tT~L~KLf~aYae~~gl-~~~slrF~F---DG~----rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
+|.|...+|. + .+.+.++++.+.|.+.++++.+. +++..|+.+ +|. .+..+.|-.++|+.+|.+|.|.
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 3455565554 4 58899999999999999999986 789999998 343 6778889999999999998763
No 41
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.98 E-value=0.057 Score=39.62 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=51.8
Q ss_pred cEEEEEEeCC-ceEEEEEcCCChHHHHHHHHHhhcCCCC---c---ceEEE-ECCcccCCCCCccccCCCCCcEEEE
Q 027888 144 KIVVSIQDKG-GLKQFRVYADDKFERLFKMYADKVNLDQ---E---NLVFC-FDGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 144 kItIkV~~qd-g~v~FrIk~tT~L~KLf~aYae~~gl~~---~---slrF~-FDG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
+|.|.|...+ ..+-+.+-.+.|+..|+..-.+..+.+. . .++|. -+|..|.++.|-.++|+.|||++..
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5778888766 4588999999999999999999888743 2 36666 6899999999999999999999864
No 42
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=94.72 E-value=0.098 Score=42.24 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=56.1
Q ss_pred CcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHhhcC-------CCCcceEEEECCcccCCCCCccccCCCCCc
Q 027888 143 AKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYADKVN-------LDQENLVFCFDGDKIGPEATPASLEMEDND 208 (217)
Q Consensus 143 ~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae~~g-------l~~~slrF~FDG~rI~~~~TP~sLgMEDGD 208 (217)
+.|.|+++-.+|. + -|++.++++...|...-.+..+ .+.+.++|+|.|+.|..+.|-.++++-=||
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~ 77 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGD 77 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccc
Confidence 5688999988886 7 7999999999999999986664 348999999999999999999999944443
No 43
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.35 E-value=0.34 Score=34.98 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=47.8
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
|+|++.+......+.+...+++..|.+.. +++...+....||+.+. .+--+.+||.|+++.
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~ 65 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence 67777666545677788888888887554 78888899999999994 455699999999874
No 44
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.23 E-value=0.82 Score=33.12 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcc-eEEE--ECCcccCCCC--CccccCCCCCcEEEE
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQEN-LVFC--FDGDKIGPEA--TPASLEMEDNDIIEV 212 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~s-lrF~--FDG~rI~~~~--TP~sLgMEDGDiIDV 212 (217)
+...+.|.|+-.+|. +.-+..++++++.|+..-....+.+... ++|. |-...|...+ |-.++|+-.+..|-|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 567789999999986 7888889999999998777666666554 7775 5567777654 999999988887765
No 45
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=93.17 E-value=0.26 Score=46.35 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=62.7
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcC--CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVN--LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~g--l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
+|+||-..+. .+.+.|++++++.-++..-+.-.| .+.....++|+|+.|....|..+.++.+++.|-|+++|+
T Consensus 2 ~lt~KtL~q~-~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 2 KLTVKTLKQQ-TFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred eeEeeeccCc-eeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 3455544222 368999999999999999999999 567999999999999999999999999999999999874
No 46
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=92.78 E-value=1.2 Score=35.47 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=52.9
Q ss_pred CcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHhhcCC-------CCcceEEEECCcccCCCCCccccCCCCCcE
Q 027888 143 AKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYADKVNL-------DQENLVFCFDGDKIGPEATPASLEMEDNDI 209 (217)
Q Consensus 143 ~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae~~gl-------~~~slrF~FDG~rI~~~~TP~sLgMEDGDi 209 (217)
+.|.|+++--+|. + .|...++++...|.+.......- +++.+|++|.|+-|..+.|-.++.+--|+.
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence 3688999888887 5 79999999999999888765422 358899999999999999999999999996
No 47
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=91.55 E-value=0.072 Score=43.20 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=57.3
Q ss_pred CceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 153 GGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 153 dg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+..+++.+-++.+...|......+-|+++...++.|+|..+.+..|-.+.||.-.|+|.++.
T Consensus 10 GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 10 GKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred CceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhH
Confidence 44578999999999999999999999999999999999999999999999999999987654
No 48
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=89.70 E-value=2.6 Score=30.24 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=43.3
Q ss_pred cEEEEEEeCCceEE-EEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888 144 KIVVSIQDKGGLKQ-FRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKIG 194 (217)
Q Consensus 144 kItIkV~~qdg~v~-FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~ 194 (217)
.|.|++...++... +.+.....|..|...-++++|.....+++.| +|..|.
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE
Confidence 37788888887665 9999999999999999999999999999999 454443
No 49
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=89.23 E-value=2.1 Score=30.71 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=37.8
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD 189 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD 189 (217)
|+|++...+....|++.+..+|..|...-++++++....+++.|.
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 567777733336899999999999999999999998888999983
No 50
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=88.88 E-value=1.7 Score=34.88 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=55.7
Q ss_pred ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCC-CCCccccCCCCCcEEEEEec
Q 027888 154 GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGP-EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 154 g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~-~~TP~sLgMEDGDiIDV~~k 215 (217)
|++...|.+++++.-|...-.+++++++..=+++|+|+.|.+ ..|-.++|+-.|-+|-+.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 457888999999999999999999999999999999998886 56889999999999988764
No 51
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=88.06 E-value=3 Score=32.17 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=41.9
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG 194 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~ 194 (217)
+|+|+|..++..+.++|.++..|..|.+.-.+++|+. +.|++.| +|..+.
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDEGD~it 53 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDDGDMIT 53 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcCCCCcc
Confidence 6889999877778999999999999999999999995 6777777 454443
No 52
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=86.92 E-value=2.7 Score=29.88 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=40.9
Q ss_pred EEEEEEeCCceEEEEEc-CCChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888 145 IVVSIQDKGGLKQFRVY-ADDKFERLFKMYADKVNLDQENLVFCF---DGDKIG 194 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk-~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~ 194 (217)
|+|++...++...|.+. ....|..|...-+++++.....+++.| +|..|.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~ 54 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT 54 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence 46777777666789999 999999999999999999878888888 455443
No 53
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=86.50 E-value=3.1 Score=29.51 Aligned_cols=54 Identities=7% Similarity=0.161 Sum_probs=43.5
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCC----CCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYADDKFERLFKMYADKVNL----DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl----~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+...+++..|++..+.+++- ....+++..||+.+. .+.-+.+||.|.++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 466666678999999999988753 457889999999998 344599999999864
No 54
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=85.55 E-value=2.3 Score=32.22 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=48.5
Q ss_pred cEEEEEEe-CC-c-e-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888 144 KIVVSIQD-KG-G-L-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIE 211 (217)
Q Consensus 144 kItIkV~~-qd-g-~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiID 211 (217)
+++.++.- .+ . . ..|.|-..+||..+.+.-|+.++++. .+....-||.-|++.||..+.=|+-|-.+.
T Consensus 2 kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLr 74 (76)
T PF03671_consen 2 KVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELR 74 (76)
T ss_dssp EEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEE
T ss_pred cEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEee
Confidence 45555542 22 2 2 47999999999999999999999987 555666689999999999887776666543
No 55
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=2.3 Score=40.53 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=45.6
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCcc--ccCCC
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPA--SLEME 205 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~--sLgME 205 (217)
+.+.|+-+|.+..|.+..|.+.|++...++.+|-|+.|+.+-|.. +|+..
T Consensus 16 l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qq 67 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQ 67 (446)
T ss_pred eeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeeccccccc
Confidence 578999999999999999999999999999999999999999988 55543
No 56
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.28 E-value=9.8 Score=28.66 Aligned_cols=71 Identities=8% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC--cccC--------CCCCccccCCCCCcEE
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG--DKIG--------PEATPASLEMEDNDII 210 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG--~rI~--------~~~TP~sLgMEDGDiI 210 (217)
...++|.|+-.+|. +.-+...+++++.|+..... .+..+..+++..+= +.+. .+.|-+++||....++
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 34678888888986 78888899999999987743 45556777777643 4554 3679999999988877
Q ss_pred EEE
Q 027888 211 EVH 213 (217)
Q Consensus 211 DV~ 213 (217)
-|.
T Consensus 81 ~V~ 83 (85)
T cd01774 81 FVQ 83 (85)
T ss_pred EEe
Confidence 664
No 57
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.19 E-value=3.6 Score=30.96 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=41.2
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE---CCcccC
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF---DGDKIG 194 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F---DG~rI~ 194 (217)
++||+...+..+.|++.++..|..|...-++++++.. +.|.+.| +|+.+.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVL 54 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEE
Confidence 4677777665689999999999999999999999976 8999999 455443
No 58
>PRK06437 hypothetical protein; Provisional
Probab=84.32 E-value=6.8 Score=28.11 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=41.4
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+...+++..|.+. +|++.+.+....||..|. .+--+.+||.|+++.
T Consensus 13 ~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 13 KTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred eEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 56777888888888754 588999999999999996 566789999999874
No 59
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=83.89 E-value=4.4 Score=30.88 Aligned_cols=48 Identities=10% Similarity=0.297 Sum_probs=40.5
Q ss_pred EEEEEEeCCceEEEEEcC--CChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888 145 IVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIG 194 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~--tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~ 194 (217)
|+|++...+..+.|++.+ +..+..|...-+.+++++ .|.+.| +|+.+.
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v~ 53 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEVS 53 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEEE
Confidence 578888777778999999 889999999999999999 788777 566554
No 60
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=83.20 E-value=3.8 Score=31.25 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.2
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG 190 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG 190 (217)
.+|+|..+. .|.++|.+.-+|..|.+.-+++.+++.+.+++.|.-
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 467777776 789999999999999999999999999999999953
No 61
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.18 E-value=3.4 Score=31.73 Aligned_cols=49 Identities=18% Similarity=0.412 Sum_probs=41.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC---cceEEEE---CCcccC
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ---ENLVFCF---DGDKIG 194 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~---~slrF~F---DG~rI~ 194 (217)
..|+++..|. +.|++.++..|..|+..-++++|.+. +.+.+.| +|+.+.
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vl 57 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVL 57 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEE
Confidence 3567788886 58999999999999999999999986 6899998 566553
No 62
>PRK07440 hypothetical protein; Provisional
Probab=83.18 E-value=7.1 Score=28.29 Aligned_cols=63 Identities=10% Similarity=0.244 Sum_probs=45.1
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..|+|+|-++ .+.+....++..|.. .+++++..+..-+||+-|..++= .+.-+.+||.|+++.
T Consensus 3 ~~m~i~vNG~----~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~w-~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 3 NPITLQVNGE----TRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQFW-EQTQVQPGDRLEIVT 65 (70)
T ss_pred CceEEEECCE----EEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHHc-CceecCCCCEEEEEE
Confidence 3566665432 355566677777664 67889999999999999974332 344599999999874
No 63
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=81.54 E-value=7.6 Score=29.65 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=51.0
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..++|-..+||.-+.+.-|+.++++. .+-...-||.-|++.+|....=|..|-.+.+.-
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliP 77 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIP 77 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecc
Confidence 46799999999999999999999987 455666699999999999999999988776553
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=81.39 E-value=13 Score=27.06 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=52.0
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEE--ECCcccCC---CCCccccCCCCCcEEEE
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFC--FDGDKIGP---EATPASLEMEDNDIIEV 212 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~--FDG~rI~~---~~TP~sLgMEDGDiIDV 212 (217)
...+|.|+-.+|. +.-+...+++++.|++......+.....+.|. |-.+.+.. +.|-.++|+--+.++-|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4567888888886 78888999999999998866666655666665 44555543 46888999877776654
No 65
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=81.12 E-value=1.2 Score=39.50 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=48.9
Q ss_pred CCCcEEEEE--EeCCc-e---E-EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC------cccCCCCCccccCCCCC
Q 027888 141 ERAKIVVSI--QDKGG-L---K-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDG------DKIGPEATPASLEMEDN 207 (217)
Q Consensus 141 ~~~kItIkV--~~qdg-~---v-~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG------~rI~~~~TP~sLgMEDG 207 (217)
....|.|-+ -+... . + ++-|.++.+++.|....+++.|++.++=-.+|.- +.|..+.|-...++.||
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~G 144 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDG 144 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TT
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCC
Confidence 344555544 45443 2 3 7999999999999999999999988654444432 45778999999999999
Q ss_pred cEEEEEec
Q 027888 208 DIIEVHTK 215 (217)
Q Consensus 208 DiIDV~~k 215 (217)
|||-+...
T Consensus 145 dIi~fQ~~ 152 (249)
T PF12436_consen 145 DIICFQRA 152 (249)
T ss_dssp EEEEEEE-
T ss_pred CEEEEEec
Confidence 99977653
No 66
>COG5417 Uncharacterized small protein [Function unknown]
Probab=79.99 E-value=11 Score=28.81 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=56.2
Q ss_pred CCcEEEEEE--eCCc-eEEEEEcCCChHHHHHHHHHhhcCCCC-----cceEEEECCcccCCCCCccccCCCCCcEEEE
Q 027888 142 RAKIVVSIQ--DKGG-LKQFRVYADDKFERLFKMYADKVNLDQ-----ENLVFCFDGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 142 ~~kItIkV~--~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~-----~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
+.+|.|+|- .-+| ..-.|+.-.-|.++|+....+-..++. ..+|..=.|+-+.+++--.+.++.|||+.+.
T Consensus 2 nm~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 2 NMHIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred CceEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 345555554 4444 467999999999999998888776653 4677777899999999999999999999875
No 67
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=79.71 E-value=18 Score=26.02 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=47.5
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC---CCCCccccCCCCCcEE
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG---PEATPASLEMEDNDII 210 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~---~~~TP~sLgMEDGDiI 210 (217)
..+|.|+-.+|. +.-+...+++++.|++.-....+ ....+.|.- -.+.+. .+.|-.++||..+-+|
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~-~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGP-PAEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCC-CCCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 457888888886 78888999999999987655443 255566654 455554 4789999999955444
No 68
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=4 Score=43.75 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=60.6
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+|+|..-+.. ..|.|..-.+.+.+++.-++.++++.+.=|++|.|+-|..+.|....++ ||-+|.+.-
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence 3555555554 5899999999999999999999999999999999999999999999999 999998754
No 69
>smart00455 RBD Raf-like Ras-binding domain.
Probab=78.43 E-value=13 Score=26.98 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=36.8
Q ss_pred EEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC
Q 027888 148 SIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG 190 (217)
Q Consensus 148 kV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG 190 (217)
+|.-++|. +.+.+++..++.-+...-|+++|+.+..+..++-|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45556775 78999999999999999999999999888877755
No 70
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=77.44 E-value=10 Score=30.82 Aligned_cols=64 Identities=13% Similarity=0.344 Sum_probs=47.7
Q ss_pred CCCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC--CCCCccccCC
Q 027888 141 ERAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG--PEATPASLEM 204 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-----v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~--~~~TP~sLgM 204 (217)
...+|+|+++.-++. ..|+|.++.+|.++...-.+..+++.+.=-|+|=..... ++++...|-+
T Consensus 27 ~~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~ 97 (116)
T KOG3439|consen 27 NIRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYE 97 (116)
T ss_pred CcceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHH
Confidence 357899999876653 379999999999999999999999986666766433333 4555555443
No 71
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=77.18 E-value=11 Score=27.47 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=41.2
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCC--C---------CcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYADDKFERLFKMYADKVNL--D---------QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl--~---------~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+. .++++.|++..+++++- . ...+++..||+.+..... .-++|||.|.++.
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 455555 78999999999888752 0 135899999999976532 5699999998763
No 72
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=77.05 E-value=12 Score=25.83 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=36.0
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+...+++..|.+.+ ++. ..+.+.+||..+...+ -.+--|.+||.|+++.
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 9 TLSLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 45556667788777765 333 4588999999986532 2223399999999874
No 73
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=76.68 E-value=18 Score=23.61 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=54.9
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.+.+.+.....+..+....+...|++...-++.|.|..+..+.|-.+.++..+..+.+...
T Consensus 11 ~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 11 TITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred EEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 4789999999999998889999999999999999999999999999999999999887653
No 74
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=76.46 E-value=2.8 Score=28.98 Aligned_cols=10 Identities=70% Similarity=1.667 Sum_probs=7.8
Q ss_pred CcCCC-CCcch
Q 027888 68 DWLPP-PPKVM 77 (217)
Q Consensus 68 dwl~p-ppk~~ 77 (217)
+|||+ ||+-.
T Consensus 5 ~~lP~fP~~HT 15 (51)
T PF10406_consen 5 DWLPPFPPPHT 15 (51)
T ss_pred ccCCCCCCCcc
Confidence 79999 77655
No 75
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=76.39 E-value=10 Score=26.31 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=39.3
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+...+++..|.. ..|++...+...+||.-|..... .+--+.+||.|+++.
T Consensus 9 ~~~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~~~-~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRSQH-ASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHHHc-CcccCCCCCEEEEEE
Confidence 345566677776665 46888999999999988875543 334499999999874
No 76
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=74.61 E-value=20 Score=26.46 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=44.6
Q ss_pred EEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC--Cc-ccCCCCCccccCCCCCcEEEEEe
Q 027888 147 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD--GD-KIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 147 IkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD--G~-rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
++|.-+||. ..+.|++..++.-+...-|+++|+.+..+-+++- |+ .+-..+|.. ..=.|+.|+|..
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~--~~L~~~El~Ve~ 71 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDS--SSLAGEELEVEP 71 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhh--hhhcCCEEEEEe
Confidence 455566776 6899999999999999999999999865554443 32 222333332 233566676653
No 77
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=74.50 E-value=29 Score=25.62 Aligned_cols=67 Identities=7% Similarity=0.090 Sum_probs=50.0
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCC-CCcceEEE--ECCcccCC-CCCccccCCCCCcEE
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNL-DQENLVFC--FDGDKIGP-EATPASLEMEDNDII 210 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl-~~~slrF~--FDG~rI~~-~~TP~sLgMEDGDiI 210 (217)
..+|.|+-.+|. +.-+.+.+++++.|++......+- ....+.+. |=.+.|.. +.|-+++||.+.-+|
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 467788888886 678889999999999877766543 34666665 56666664 779999999976554
No 78
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=73.01 E-value=14 Score=25.72 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=38.5
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+...+++..|.+ .+++++..+.+..||+-|..++ ..+.-|.+||.|+++.
T Consensus 7 ~~~~~~~~tv~~ll~----~l~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 7 PVEVEDGLTLAALLE----SLGLDPRRVAVAVNGEIVPRSE-WDDTILKEGDRIEIVT 59 (64)
T ss_pred EEEcCCCCcHHHHHH----HcCCCCCeEEEEECCEEcCHHH-cCceecCCCCEEEEEE
Confidence 455566666766665 4577789999999999996433 3334699999999874
No 79
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=72.83 E-value=12 Score=26.23 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=37.8
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+...+++..|.+. .+++...+....||+.+..++ =.+.-|.+||.|+++.
T Consensus 8 ~~~~~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 8 PREVEEGATLAELLEE----LGLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVT 60 (65)
T ss_pred EEEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEE
Confidence 4555566677766654 467889999999999997653 1113499999999864
No 80
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=72.06 E-value=12 Score=29.01 Aligned_cols=53 Identities=8% Similarity=0.143 Sum_probs=40.4
Q ss_pred cEEEEEEeCCceEEEEEc--CCChHHHHHHHHHhhcC--CCCcceEEEECCcccCCC
Q 027888 144 KIVVSIQDKGGLKQFRVY--ADDKFERLFKMYADKVN--LDQENLVFCFDGDKIGPE 196 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk--~tT~L~KLf~aYae~~g--l~~~slrF~FDG~rI~~~ 196 (217)
+|+|++.+.--.+.+.|. .+++-.-|.....++.+ .+...+||+|+|+-|.+.
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~ 58 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDH 58 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCcc
Confidence 467776652222667777 88999999999998884 455899999999999854
No 81
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=71.73 E-value=19 Score=25.93 Aligned_cols=54 Identities=7% Similarity=0.154 Sum_probs=42.2
Q ss_pred EEEEEcCC-ChHHHHHHHHHhhcC-C--CCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYAD-DKFERLFKMYADKVN-L--DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~t-T~L~KLf~aYae~~g-l--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+... +++..|....+++++ + ....+++..||+.+.. +.-+++||.|.++.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 35667666 899999999998875 2 2367889999999873 56899999998863
No 82
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=70.05 E-value=15 Score=25.94 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=38.7
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+...+++..|.. ..|++...+...+||.-|...+=.. . |.+||.|+++.
T Consensus 9 ~~~~~~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~~~~~-~-L~~gD~ieIv~ 60 (65)
T PRK05863 9 QVEVDEQTTVAALLD----SLGFPEKGIAVAVDWSVLPRSDWAT-K-LRDGARLEVVT 60 (65)
T ss_pred EEEcCCCCcHHHHHH----HcCCCCCcEEEEECCcCcChhHhhh-h-cCCCCEEEEEe
Confidence 344556667776665 4688999999999999887544332 3 89999999874
No 83
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=67.77 E-value=27 Score=26.79 Aligned_cols=50 Identities=24% Similarity=0.443 Sum_probs=39.8
Q ss_pred EEEEEEeCCceEEEEEcC-----CChHHHHHHHHHhhcCCCC-cceEEEE---CCcccC
Q 027888 145 IVVSIQDKGGLKQFRVYA-----DDKFERLFKMYADKVNLDQ-ENLVFCF---DGDKIG 194 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~-----tT~L~KLf~aYae~~gl~~-~slrF~F---DG~rI~ 194 (217)
++||+...+..+.|++.. +..|..|...-++.++++. ..+.+.| +|.-|.
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~ 59 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT 59 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEE
Confidence 367777766557898884 7999999999999999987 8899988 455543
No 84
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=67.74 E-value=44 Score=24.83 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=51.5
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC--Cccc---CCCCCccccCCCCCcEEEE
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD--GDKI---GPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD--G~rI---~~~~TP~sLgMEDGDiIDV 212 (217)
..++|.|+-.+|. +.-+...+++|+.|++.... .|.+...+++.-. =+.+ ..+.|-.++||--...+-|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 4678888888986 78899999999999987765 4666677777432 2222 2356899999988877765
No 85
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=67.10 E-value=16 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=39.7
Q ss_pred EEEEEcCCChHHHHHHHHHhhc-CCCC--cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYADDKFERLFKMYADKV-NLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~-gl~~--~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+...+++..|.+....++ ++.. ..+.+..||+.+. .+.-++|||.|.++.
T Consensus 21 ~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P 77 (82)
T PLN02799 21 MTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIP 77 (82)
T ss_pred EEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC
Confidence 5677777889999998887766 2221 4467888999873 344589999999863
No 86
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=65.49 E-value=32 Score=23.95 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 163 DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 163 tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+++..|...+ +++.+.+..-.||+-+...+ =.+--|.|||.|+++.
T Consensus 14 ~~tl~~Ll~~l----~~~~~~vavavN~~iv~~~~-~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 14 ATTLALLLAEL----DYEGNWLATAVNGELVHKEA-RAQFVLHEGDRIEILS 60 (65)
T ss_pred cCcHHHHHHHc----CCCCCeEEEEECCEEcCHHH-cCccccCCCCEEEEEE
Confidence 35677777644 77778899999999997532 2235599999999874
No 87
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=65.03 E-value=15 Score=28.26 Aligned_cols=59 Identities=22% Similarity=0.479 Sum_probs=38.2
Q ss_pred cEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCccc--CCCCCcccc
Q 027888 144 KIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKI--GPEATPASL 202 (217)
Q Consensus 144 kItIkV~~qdg~-----v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI--~~~~TP~sL 202 (217)
+|+|+++.-++. ..|+|..+.+|+.+...-+++.++..+.-.|+|=+... ++++|..+|
T Consensus 1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L 66 (87)
T PF04110_consen 1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDL 66 (87)
T ss_dssp EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHH
T ss_pred CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHH
Confidence 577888776653 37999999999999999999999976555555533332 356665543
No 88
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=62.22 E-value=35 Score=23.99 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=38.8
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+....++..|.. .++.....+.+-.||+-|..+ .-.+.-+.+||.|+++.
T Consensus 9 ~~~~~~~~tl~~ll~----~l~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 9 PMQCAAGQTVHELLE----QLNQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEEcCCCCCHHHHHH----HcCCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE
Confidence 455566667777775 467777889999999999633 23344599999999864
No 89
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=62.21 E-value=16 Score=25.53 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=46.7
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcCC--CCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 155 LKQFRVYADDKFERLFKMYADKVNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.....+....+++.|++..+.+++. ....+++..||+.+.. .-.+.-+.+||.|.++.
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 3467788889999999988887743 4588999999999988 35667789999998864
No 90
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=60.80 E-value=55 Score=24.73 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=40.5
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+....++..|... ++++...+..-+||.-|.. ..=.+.-|.+||.|+++.
T Consensus 27 ~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 27 SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEE
Confidence 3555666777777765 5889999999999999964 334455699999999874
No 91
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=59.68 E-value=41 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=38.1
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
..+.|+|.-.+|. +.+.|..+++-+.|+..-|++.|+.. ..+.+++
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~ 49 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQF 49 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEE
Confidence 4578888888886 69999999999999999999999953 5555555
No 92
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=57.99 E-value=38 Score=33.49 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=51.7
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhc--CCCCcceEEEE--CCccc----CCCCCccccCCCCCcEEEEEe
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKV--NLDQENLVFCF--DGDKI----GPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~--gl~~~slrF~F--DG~rI----~~~~TP~sLgMEDGDiIDV~~ 214 (217)
-+++++++|.....+-.+..|..|...--.-+ |.++.++...- +|+-+ -.++||.+|||..|+++.+..
T Consensus 2 i~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 37888999988889999999997765544433 45677777665 33433 258999999999999987765
No 93
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=54.52 E-value=48 Score=27.16 Aligned_cols=50 Identities=30% Similarity=0.425 Sum_probs=32.2
Q ss_pred CcCCCCCcch------hhhhhhhhhHHHHHHHhHHHHHHH-----HhhHHHHHHHHHHHHH
Q 027888 68 DWLPPPPKVM------VQKQLVEDSAIKELRLKKQELVSF-----AKSADDVIRAVEESVK 117 (217)
Q Consensus 68 dwl~pppk~~------~~~~~~~~~~~~~lr~~k~el~~~-----a~s~~~~l~~v~E~~k 117 (217)
||.-||=.++ ......|...=++||+.+||+..+ ++.=..+.++=++...
T Consensus 3 d~igPPd~~SNlRpi~~~~~~nEt~lE~klR~~Rqe~~~wNq~FW~~~N~~F~~~K~~fi~ 63 (126)
T PF10231_consen 3 DWIGPPDPVSNLRPIIFHIPENETPLERKLRLLRQETQEWNQEFWAKHNIRFSKEKEEFIE 63 (126)
T ss_pred CCcCCCCccCCcceeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7987765665 333344555557899999999877 4555556665555444
No 94
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=54.30 E-value=10 Score=28.87 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=37.7
Q ss_pred EEEcCCChHHHHHHHHHhhcCCCCc-------ceEEEECCc-------ccCCCCCccccCCCCCcEEEEE
Q 027888 158 FRVYADDKFERLFKMYADKVNLDQE-------NLVFCFDGD-------KIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 158 FrIk~tT~L~KLf~aYae~~gl~~~-------slrF~FDG~-------rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
+.+.++.+|+.+++..|++...... +=.+++.+- |=+-+.|-.+| +.+|++|-|-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 4688999999999999998544433 333444333 22246677899 9999999774
No 95
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=53.08 E-value=19 Score=24.91 Aligned_cols=10 Identities=50% Similarity=1.251 Sum_probs=7.3
Q ss_pred CcCCC-CCcch
Q 027888 68 DWLPP-PPKVM 77 (217)
Q Consensus 68 dwl~p-ppk~~ 77 (217)
+|||+ |+.-.
T Consensus 5 ~~LP~FP~~HT 15 (54)
T cd08049 5 SWLPPFPDPHT 15 (54)
T ss_pred cCCCCCCCchh
Confidence 79999 76444
No 96
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=52.21 E-value=61 Score=23.48 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=33.3
Q ss_pred EEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC
Q 027888 147 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG 190 (217)
Q Consensus 147 IkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG 190 (217)
++|.=++|+ ..+.|++..+++-+...-|+++|+.+..+..+.-|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 455567776 78999999999999999999999999776665533
No 97
>PRK01777 hypothetical protein; Validated
Probab=52.18 E-value=1.1e+02 Score=23.68 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.8
Q ss_pred cEEEEEEe--CCce--EEEEEcCCChHHHHHHHHHh-hc--CCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 144 KIVVSIQD--KGGL--KQFRVYADDKFERLFKMYAD-KV--NLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 144 kItIkV~~--qdg~--v~FrIk~tT~L~KLf~aYae-~~--gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.|.|.|.. .+.. ..+.+...++..-+..+.-- .. .++.....+..+|+.... +--|++||.|++|.
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIyr 75 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIYR 75 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEec
Confidence 45566654 3332 57899999999998877631 11 233344578888988865 34799999999985
No 98
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=51.92 E-value=1.1e+02 Score=23.58 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=48.2
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--C-Cc--ccCCCCCccccCCCCCcEEEEE
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--D-GD--KIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--D-G~--rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
|.+.|.--+.. ..++|++.+|..||...-...+|.+- .-|+.| . |+ .|+...|-+..|+=..-.|-+.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 34556544444 79999999999999999999998875 455555 3 33 3566778777777666555543
No 99
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=8.2 Score=28.87 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=55.6
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+.+.=|. +.++..++++..-+.+..|.+.|-.++.+++.=-+.-+...-|-.+.+|.||--.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 3444444454 78999999999999999999999999988887556666677899999999998777653
No 100
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=51.03 E-value=1.3e+02 Score=29.58 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=36.9
Q ss_pred cCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE
Q 027888 139 AIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188 (217)
Q Consensus 139 ~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F 188 (217)
.++...|+|.++..+|. ..-+.++.+++..||+.+...- .....+.|..
T Consensus 378 a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~~-~~~~e~~~~~ 427 (460)
T KOG1363|consen 378 ASEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSNG-FHPEEYSLNT 427 (460)
T ss_pred cCcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhcc-CCchhhcccc
Confidence 55778999999999997 5678899999999998776554 4444444443
No 101
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.82 E-value=52 Score=25.46 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCcEEEEEEeC-Cce---EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 142 RAKIVVSIQDK-GGL---KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 142 ~~kItIkV~~q-dg~---v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.++..++.-. +-. .++.|-..+||..+.+.-|+.+.++. .+-...-||.-|++.+|....=|+.|-.+....
T Consensus 11 g~kv~fk~tltsdpklpfkv~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~ip 88 (94)
T KOG3483|consen 11 GSKVSFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIP 88 (94)
T ss_pred cceeEEEEEeccCCCCccceecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEecc
Confidence 44555555432 222 47899999999999999999999987 566677799999999999999898888776543
No 102
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=50.25 E-value=92 Score=30.27 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=56.0
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCC------CcceEEEE-CCcccCCCCCccccCCCCCcEEEEEe
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLD------QENLVFCF-DGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~------~~slrF~F-DG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..|+|...+..+-.-+--+.|+..|+-.--+..|-. ....+|.= +|..|+++.|..++|+.|||+.....
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 467777777778899999999999998888877652 23455543 89999999999999999999886654
No 103
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=49.73 E-value=1.1e+02 Score=23.15 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC--Cccc---CCCCCccccCCCCCcEEEEE
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD--GDKI---GPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD--G~rI---~~~~TP~sLgMEDGDiIDV~ 213 (217)
++.-.|.|+-.+|+ +.-+.+.+++|+.|+..... .|.+...+.++-+ =+.+ ..+.|-.++||-.-.++-|.
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 34567788888987 67888889999999985554 6777777777642 2222 22469999999998887664
No 104
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=49.51 E-value=44 Score=23.81 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=37.4
Q ss_pred EEEcCC-ChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 158 FRVYAD-DKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 158 FrIk~t-T~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.+... +++..|. +..|+++..+..-+||.-|..++= .+.-|.+||.|++..
T Consensus 10 ~~~~~~~~tv~~lL----~~l~~~~~~vav~vN~~iv~r~~w-~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 10 IEVPESVKTVAELL----THLELDNKIVVVERNKDILQKDDH-TDTSVFDGDQIEIVT 62 (67)
T ss_pred EEcCCCcccHHHHH----HHcCCCCCeEEEEECCEEeCHHHc-CceecCCCCEEEEEE
Confidence 444444 4565555 467889999999999999976432 234589999999864
No 105
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=48.85 E-value=76 Score=22.57 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=34.8
Q ss_pred EEEEEEeCCc-----eEEEEEcCCChHHHHHHHHHhhcCC--CCcceEEE
Q 027888 145 IVVSIQDKGG-----LKQFRVYADDKFERLFKMYADKVNL--DQENLVFC 187 (217)
Q Consensus 145 ItIkV~~qdg-----~v~FrIk~tT~L~KLf~aYae~~gl--~~~slrF~ 187 (217)
-.|+|-..++ ...++|..+|+-+.|+.+-++++|+ ++..+.++
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 3566666554 3589999999999999999999999 55778774
No 106
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=47.41 E-value=1e+02 Score=23.40 Aligned_cols=58 Identities=16% Similarity=0.442 Sum_probs=41.8
Q ss_pred cEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC--CCCCccc
Q 027888 144 KIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG--PEATPAS 201 (217)
Q Consensus 144 kItIkV~~qdg~-----v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~--~~~TP~s 201 (217)
+|+|+++.-+.. ..|.|..+.+|..++..-.++.+++++.--|+|=|..+. +++|..+
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~ 65 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGN 65 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHH
Confidence 577888765542 379999999999999999999999886655555444332 3455543
No 107
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.54 E-value=59 Score=27.97 Aligned_cols=53 Identities=30% Similarity=0.550 Sum_probs=32.4
Q ss_pred cCCcCCCCCcch-----hhhhhhhhhHH-HHHHHhHHHHHHH-----HhhHHHHHHHHHHHHHH
Q 027888 66 EEDWLPPPPKVM-----VQKQLVEDSAI-KELRLKKQELVSF-----AKSADDVIRAVEESVKR 118 (217)
Q Consensus 66 ~edwl~pppk~~-----~~~~~~~~~~~-~~lr~~k~el~~~-----a~s~~~~l~~v~E~~k~ 118 (217)
--||.-||-+.+ +.--++|-|.| ++|||+++|+... |+--+-+-++-++-..+
T Consensus 49 ~~DwiGPPD~~SnlRp~v~~y~deEs~Ler~lRl~R~E~~~WN~dFWa~hN~~F~~eKedFi~~ 112 (178)
T KOG4094|consen 49 RFDWIGPPDNLSNLRPIVLRYVDEESELERQLRLAREELNQWNSDFWAEHNQLFDREKEDFIER 112 (178)
T ss_pred ccCccCCchhhhhhhHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357998887776 33455555544 6899999999764 44444344444443333
No 108
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=45.95 E-value=83 Score=22.10 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=32.4
Q ss_pred EeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 150 QDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 150 ~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
.-.||+ +.|.|.++++-+.|++.-|++.|+.- .-+-+.|
T Consensus 2 ~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 2 RLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 345776 79999999999999999999999954 6666776
No 109
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=45.05 E-value=80 Score=22.74 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=39.2
Q ss_pred EEEEeCC---ce-EEEEEcCCChHHHHHHHHHhhcCCC--CcceEEEE---C---CcccCCCCCccc
Q 027888 147 VSIQDKG---GL-KQFRVYADDKFERLFKMYADKVNLD--QENLVFCF---D---GDKIGPEATPAS 201 (217)
Q Consensus 147 IkV~~qd---g~-v~FrIk~tT~L~KLf~aYae~~gl~--~~slrF~F---D---G~rI~~~~TP~s 201 (217)
|+|...+ +. ..+.|.++++...++..-.+++|++ ++.+.++- + .+.+.++.-|-.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 4454444 54 7899999999999999999999997 46666653 2 234555666644
No 110
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=44.89 E-value=97 Score=23.86 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=42.2
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE---CCcccCCCC
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF---DGDKIGPEA 197 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F---DG~rI~~~~ 197 (217)
|+||+...+....+.+...++|..|.+..++..+... ..|+..| +|..+.-+.
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS 57 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISS 57 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecC
Confidence 4677776665568999999999999999999999876 6888888 577765443
No 111
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=44.29 E-value=59 Score=23.73 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=39.3
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...+...+++.-|. ...|++...+...+||+.+..++ =.+.-+++||.|+|..
T Consensus 11 ~~e~~~~~tv~dLL----~~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~ 63 (68)
T COG2104 11 EVEIAEGTTVADLL----AQLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVR 63 (68)
T ss_pred EEEcCCCCcHHHHH----HHhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEE
Confidence 45555556666655 46789999999999999995322 2567789999999864
No 112
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=44.02 E-value=75 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=34.0
Q ss_pred EEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC--cceEEEEC
Q 027888 149 IQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ--ENLVFCFD 189 (217)
Q Consensus 149 V~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~--~slrF~FD 189 (217)
|.-+||. +...|++.+++.-+.+.-|++.|+++ .-+|+.+-
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~ 47 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFL 47 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEE
Confidence 4456776 78999999999999999999999987 45666664
No 113
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=40.76 E-value=43 Score=26.01 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=33.2
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQEN 183 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~s 183 (217)
+.|+|.=.+|. +.++|+++..=+.++++-|.+.|++...
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 45677667775 8999999999999999999999998643
No 114
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=40.24 E-value=1.1e+02 Score=22.10 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHhhcC-----CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 164 DKFERLFKMYADKVN-----LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 164 T~L~KLf~aYae~~g-----l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
++.+.|.+.-++++. +..+.+++..||.-+ ..+| -+.|||.|-++-
T Consensus 26 ~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~-~~~~----~l~dgDeVai~P 76 (81)
T PRK11130 26 PTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLV-SFDH----PLTDGDEVAFFP 76 (81)
T ss_pred CCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEc-CCCC----CCCCCCEEEEeC
Confidence 677777777777653 234678888888654 3445 499999998763
No 115
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=39.83 E-value=1.8e+02 Score=22.57 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=45.8
Q ss_pred EEEEEcCCChHHHHHHHHHhhc-CC--C--C-cceEEEECC--cccCCCCCccccCCCCCcEEEEEec
Q 027888 156 KQFRVYADDKFERLFKMYADKV-NL--D--Q-ENLVFCFDG--DKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~-gl--~--~-~slrF~FDG--~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.-+-|-...+|..+-.+.|-+. |. . + ..+++..+| +.+..+.|..+-||.--|+|||+.+
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4678899999999999888643 43 1 2 489999999 9999999999999999999999864
No 116
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=39.00 E-value=55 Score=22.86 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=33.8
Q ss_pred cCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccCCCCCccccCCCCCcEEEE
Q 027888 161 YADDKFERLFKMYADKVNLDQENLVFCF--DGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 161 k~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
+....|..|++...++.+++.. +|=+| +|.+| .+.++ ++||+..-|
T Consensus 6 r~~~s~e~lL~~it~~v~l~~g-Vr~lyt~~G~~V---~~l~~--l~dg~~yVa 53 (60)
T PF03607_consen 6 RRFRSFEQLLDEITEKVQLPSG-VRKLYTLDGKRV---KSLDE--LEDGGSYVA 53 (60)
T ss_dssp TTHSSHHHHHHHHHHSSSSTTS--SEEEETTSSEE---SSGGG--S-TTEEEEE
T ss_pred hhhcCHHHHHHHHHhhcCCCcc-cceEECCCCCEe---CCHHH--HCCCCEEEE
Confidence 4557899999999999999866 76666 89999 45666 778876443
No 117
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=38.40 E-value=96 Score=25.44 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=51.6
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCC
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM 204 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgM 204 (217)
+-|.|+-+...++...+.+++.-.|.+.-..-...+++.-|++-+++-+..+.|-.+.|+
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~ 62 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGF 62 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCc
Confidence 456676555568889999999999999999999999999999988888888888888887
No 118
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=36.69 E-value=1.7e+02 Score=21.34 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=48.9
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccCC---CCCccccCCCCCcEEEE
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIGP---EATPASLEMEDNDIIEV 212 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~~---~~TP~sLgMEDGDiIDV 212 (217)
...|.|+-.+|. +.-+...++++..|++.-....+- ...+.|.- =.+.+.. +.|-.+|||-...++-|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC-CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 456778878886 778888999999999988765543 24455543 3444542 57999999988877765
No 119
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=35.54 E-value=1e+02 Score=29.13 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=40.0
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+...+++..|.+ .++++.+.+...+||+-|..++ =.+.-+.+||.|+++.
T Consensus 9 ~~el~e~~TL~dLL~----~L~i~~~~VAVeVNgeIVpr~~-w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 9 PRQVPAGLTIAALLA----ELGLAPKKVAVERNLEIVPRSE-YGQVALEEGDELEIVH 61 (326)
T ss_pred EEecCCCCcHHHHHH----HcCCCCCeEEEEECCEECCHHH-cCccccCCCCEEEEEE
Confidence 456667777777765 4689999999999999996433 2233499999999874
No 120
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=35.46 E-value=1.1e+02 Score=22.60 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=38.7
Q ss_pred cCCChHHHHHHHHHhhcC-CCCcceEEEECCcccCCCCCcccc-CCCCCcEEEEEec
Q 027888 161 YADDKFERLFKMYADKVN-LDQENLVFCFDGDKIGPEATPASL-EMEDNDIIEVHTK 215 (217)
Q Consensus 161 k~tT~L~KLf~aYae~~g-l~~~slrF~FDG~rI~~~~TP~sL-gMEDGDiIDV~~k 215 (217)
.+++.+.-|...-+..-. ....++.|.++|.+|.+...-.++ |+.+|-.|.+..+
T Consensus 2 ~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 2 SPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred ChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 345555556655555544 346899999999999887777666 4788888877644
No 121
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=33.00 E-value=71 Score=24.02 Aligned_cols=52 Identities=8% Similarity=0.178 Sum_probs=41.3
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCccccCCCCCcEEEEEec
Q 027888 155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.+.+.+...++++.+.+ ..|++...+-+.+ ||+.+..+ .-+++||.|.|+-.
T Consensus 24 ~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPV 76 (81)
T ss_pred ceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEec
Confidence 36778888899888875 5799998887776 89888775 55669999999854
No 122
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=32.63 E-value=1.3e+02 Score=29.64 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=45.1
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCC--ccccCCCCCcEEEEEec
Q 027888 143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEAT--PASLEMEDNDIIEVHTK 215 (217)
Q Consensus 143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~T--P~sLgMEDGDiIDV~~k 215 (217)
...+++|....| ++.++...|-++...| ...+++.++|+.++..+- --.||..-||.|.+..+
T Consensus 156 ~~~~~~v~n~~G---LHARPAa~lv~~a~~f-------~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~ 220 (473)
T PRK11377 156 RSLSVVIKNRNG---LHVRPASRLVYTLSTF-------NADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAK 220 (473)
T ss_pred eEEEEEEcCCCC---CcHhHHHHHHHHHhhC-------CCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEe
Confidence 345555555554 5667777777776666 357788899988887653 36899999999998764
No 123
>PHA01623 hypothetical protein
Probab=31.35 E-value=36 Score=23.92 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.9
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcCCCCc
Q 027888 155 LKQFRVYADDKFERLFKMYADKVNLDQE 182 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~ 182 (217)
.+.|.|+-+..+..-++.||...|+...
T Consensus 13 ~~r~sVrldeel~~~Ld~y~~~~g~~rS 40 (56)
T PHA01623 13 KAVFGIYMDKDLKTRLKVYCAKNNLQLT 40 (56)
T ss_pred ceeEEEEeCHHHHHHHHHHHHHcCCCHH
Confidence 3789999999999999999999998753
No 124
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=30.69 E-value=2.1e+02 Score=20.70 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=43.6
Q ss_pred EEEEEeCC---ce-EEEEEcCCChHHHHHHHHHhhcCCCC--cceEEE--E-CC--cccCCCCCccccCCCC
Q 027888 146 VVSIQDKG---GL-KQFRVYADDKFERLFKMYADKVNLDQ--ENLVFC--F-DG--DKIGPEATPASLEMED 206 (217)
Q Consensus 146 tIkV~~qd---g~-v~FrIk~tT~L~KLf~aYae~~gl~~--~slrF~--F-DG--~rI~~~~TP~sLgMED 206 (217)
.|+|-..+ +. +.+.|..+++-..++..-++++++.. +.+.++ + +| ..|.++.-|-.+-+..
T Consensus 4 ~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~ 75 (90)
T smart00314 4 VLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQLQKLW 75 (90)
T ss_pred EEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceEehhhC
Confidence 34554444 54 79999999999999999999999964 455544 2 44 5566777776665554
No 125
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.60 E-value=25 Score=26.29 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.4
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
..|+..||+++||.|.|..
T Consensus 41 ~~dA~~lgi~~Gd~V~v~~ 59 (116)
T cd02790 41 PEDAKRLGIEDGEKVRVSS 59 (116)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 3689999999999998864
No 126
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.47 E-value=25 Score=26.35 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=16.0
Q ss_pred CCccccCCCCCcEEEEEe
Q 027888 197 ATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 197 ~TP~sLgMEDGDiIDV~~ 214 (217)
.+++.||+++||.|.|.-
T Consensus 42 ~dA~~lgi~~Gd~V~v~~ 59 (120)
T cd00508 42 EDAARLGIKDGDLVRVSS 59 (120)
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 588999999999999874
No 127
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=30.07 E-value=30 Score=28.25 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=9.5
Q ss_pred ccCCCCCcEEEEEe
Q 027888 201 SLEMEDNDIIEVHT 214 (217)
Q Consensus 201 sLgMEDGDiIDV~~ 214 (217)
.|+|+|||.|.|.+
T Consensus 108 ~L~L~DGD~V~v~V 121 (121)
T PF01982_consen 108 TLGLKDGDEVEVEV 121 (121)
T ss_dssp HTT--TT-EEEEEE
T ss_pred hcCCCCCCEEEEEC
Confidence 69999999999864
No 128
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=29.53 E-value=31 Score=34.08 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=16.9
Q ss_pred CCCccccCCCCCcEEEEEec
Q 027888 196 EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~k 215 (217)
-+.+++|+|.+||||+|+.+
T Consensus 443 pqnedeLEl~egDii~VmeK 462 (489)
T KOG4225|consen 443 PQNEDELELREGDIIDVMEK 462 (489)
T ss_pred CCCchhheeccCCEEeeeec
Confidence 35678999999999999865
No 129
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=29.45 E-value=2.7e+02 Score=23.90 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=40.0
Q ss_pred EEEEEEeCCc-----eEEEEEcCCChHHHHHHHHHhhcCCCCcc-eEEEEC-CcccC-CCCCc
Q 027888 145 IVVSIQDKGG-----LKQFRVYADDKFERLFKMYADKVNLDQEN-LVFCFD-GDKIG-PEATP 199 (217)
Q Consensus 145 ItIkV~~qdg-----~v~FrIk~tT~L~KLf~aYae~~gl~~~s-lrF~FD-G~rI~-~~~TP 199 (217)
|+|-|.+-+| .+.|.+..++++..|+.....+.+++... +.|.+. |..|. ..+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~ 63 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIP 63 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCcccc
Confidence 4566666665 36899999999999999999999998765 666663 44553 34443
No 130
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=29.10 E-value=1.5e+02 Score=23.11 Aligned_cols=58 Identities=7% Similarity=0.213 Sum_probs=40.1
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
+.-.|.=.+|+..|.+.--.|.|++...+.|+.....|.++.|--+-+.+-.-.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 4566777899999999999999999999999999888999988888777766655443
No 131
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.74 E-value=27 Score=26.41 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
..+++.||+++||.|.|.-
T Consensus 41 p~dA~~lgi~~Gd~V~v~s 59 (122)
T cd02792 41 PELAAERGIKNGDMVWVSS 59 (122)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 3478999999999998864
No 132
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=28.69 E-value=1.7e+02 Score=23.99 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=32.9
Q ss_pred EEE-EEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCcc
Q 027888 156 KQF-RVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPA 200 (217)
Q Consensus 156 v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~ 200 (217)
..| -|-.+.++..++..-.++.++++..+ |+| +|.-...+.|..
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn~lp~~s~~mg 87 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKV-TLAIEGSTPAVTATVG 87 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHE-EEEECCccCCccchHH
Confidence 345 79999999999999999999999885 665 554333344444
No 133
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=28.39 E-value=1.9e+02 Score=22.30 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=38.8
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKIG 194 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~ 194 (217)
+.++...+....|.+...-.+..|...-+.-++++..++-..| ||..|.
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~IT 53 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEIT 53 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEE
Confidence 4566554545688888899999999999999999987888888 555554
No 134
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=27.96 E-value=2.3e+02 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHhHHHHHHHH
Q 027888 83 VEDSAIKELRLKKQELVSFA 102 (217)
Q Consensus 83 ~~~~~~~~lr~~k~el~~~a 102 (217)
..|-+..+||.-+.||....
T Consensus 34 eDDEI~aeLR~lQ~eLr~~~ 53 (131)
T PF10198_consen 34 EDDEISAELRRLQAELREQS 53 (131)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 36677777777777776654
No 135
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=27.66 E-value=1.8e+02 Score=25.80 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=34.1
Q ss_pred cEEEEEEeCC---c-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE
Q 027888 144 KIVVSIQDKG---G-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188 (217)
Q Consensus 144 kItIkV~~qd---g-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F 188 (217)
.|.|++.... + ...+.+.+..+..-|.++.|++.|+++..+||+=
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 5777776533 2 3689999999999999999999999999999985
No 136
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=26.61 E-value=26 Score=26.40 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+.||+++||.|.|.-
T Consensus 37 p~dA~~lgi~~Gd~V~v~s 55 (116)
T cd02786 37 PADAAARGIADGDLVVVFN 55 (116)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 3567889999999998763
No 137
>PF04785 Rhabdo_M2: Rhabdovirus matrix protein M2; InterPro: IPR006870 M protein is involved in condensing and targeting the ribonucleoprotein (RNP) coil to the plasma membrane. M interacts specifically with the transmembrane spike protein (G) and it is important for the incorporation of G protein into budding virions [].; GO: 0016032 viral reproduction, 0019031 viral envelope; PDB: 2W2S_A.
Probab=26.38 E-value=19 Score=31.04 Aligned_cols=14 Identities=43% Similarity=1.099 Sum_probs=2.0
Q ss_pred cccCCcCCCCCcch
Q 027888 64 EEEEDWLPPPPKVM 77 (217)
Q Consensus 64 ~~~edwl~pppk~~ 77 (217)
|||+=|||||--++
T Consensus 27 ddddlwlpppeyvp 40 (202)
T PF04785_consen 27 DDDDLWLPPPEYVP 40 (202)
T ss_dssp -----EE-------
T ss_pred CcccccCCCccccc
Confidence 44788998775444
No 138
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=25.59 E-value=28 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=13.7
Q ss_pred CCccccCCCCCcEEEEEec
Q 027888 197 ATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 197 ~TP~sLgMEDGDiIDV~~k 215 (217)
.+++.||++|||.|.|.-.
T Consensus 37 ~dA~~~Gi~~Gd~V~v~s~ 55 (110)
T PF01568_consen 37 EDAAKLGIKDGDWVRVSSP 55 (110)
T ss_dssp HHHHHCT--TTCEEEEEET
T ss_pred HHHHHhcCcCCCEEEEEec
Confidence 4678899999999988643
No 139
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=25.55 E-value=49 Score=29.27 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=14.2
Q ss_pred ccCCCCCcEEEEEecc
Q 027888 201 SLEMEDNDIIEVHTKK 216 (217)
Q Consensus 201 sLgMEDGDiIDV~~kQ 216 (217)
.|+|+|||.|.+.+.+
T Consensus 202 ~l~l~dgd~v~i~i~~ 217 (217)
T PRK14165 202 ELNLKDGDRVEVLVKK 217 (217)
T ss_pred hcCCCCCCEEEEEEeC
Confidence 6999999999998864
No 140
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.48 E-value=1.7e+02 Score=24.53 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=29.3
Q ss_pred HHHHhHHHHHH-HHhhHHHHHHHHHHHHHHhhccCCchhhhhh
Q 027888 90 ELRLKKQELVS-FAKSADDVIRAVEESVKRKLDSSMPAALEAE 131 (217)
Q Consensus 90 ~lr~~k~el~~-~a~s~~~~l~~v~E~~k~~~~~~~~~e~~~~ 131 (217)
+|-..||||.+ ||.||+ +|+++-...++.-++-..+++..+
T Consensus 49 ~ld~~rqel~~HFa~sAe-Llktl~~dYqklyqHmA~ss~~Ll 90 (138)
T COG3105 49 QLDEYRQELVKHFARSAE-LLKTLAQDYQKLYQHMAKSSTSLL 90 (138)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhhhC
Confidence 46678888886 688888 999999988776655444444333
No 141
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=24.12 E-value=1.6e+02 Score=22.34 Aligned_cols=34 Identities=6% Similarity=0.094 Sum_probs=31.8
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD 189 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD 189 (217)
+-+++.+..++..|-..-+++.+++.+..+|.|.
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 6789999999999999999999999999999993
No 142
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=23.90 E-value=32 Score=26.03 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=16.1
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
.++++.||+++||.|.|.-
T Consensus 41 ~~dA~~lgi~~Gd~V~v~~ 59 (122)
T cd02791 41 PEDAARLGLKEGDLVRVTS 59 (122)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 3488999999999998764
No 143
>PRK14132 riboflavin kinase; Provisional
Probab=23.52 E-value=53 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=12.8
Q ss_pred cccCCCCCcEEEEEe
Q 027888 200 ASLEMEDNDIIEVHT 214 (217)
Q Consensus 200 ~sLgMEDGDiIDV~~ 214 (217)
+.|+|+|||.|.+.+
T Consensus 112 ~~L~LkDGD~V~I~i 126 (126)
T PRK14132 112 KFLNLKDGDVVKIVI 126 (126)
T ss_pred hhcCCCCCCEEEEEC
Confidence 479999999998864
No 144
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.08 E-value=41 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.2
Q ss_pred CCCccccCCCCCcEEEEEec
Q 027888 196 EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~k 215 (217)
..+.+.||+++||.|.|.-.
T Consensus 36 p~~A~~~gi~~Gd~V~v~s~ 55 (121)
T cd02794 36 PLDAAARGIKDGDRVLVFND 55 (121)
T ss_pred HHHHHHcCCCCCCEEEEEcC
Confidence 34689999999999988643
No 145
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=22.92 E-value=97 Score=22.75 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=37.2
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCC--CccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEA--TPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~--TP~sLgMEDGDiIDV~~k 215 (217)
+++|..+.| +..++...|-.+...| ..++.+.++|..++..+ .--+||+.-||.|.+..+
T Consensus 5 ~~~i~~~~G---lHaRpA~~lv~~a~~f-------~s~I~i~~~~~~~dakSil~ll~Lg~~~G~~i~i~~~ 66 (82)
T TIGR01003 5 EVTIINKVG---LHARPAAILVKLASGF-------DSEITLTKNGKEVNAKSIMGIMMLGAGQGTEVTVSAD 66 (82)
T ss_pred EEEEcCCCc---ccHHHHHHHHHHHHhC-------CCEEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEe
Confidence 344444444 3444444444444433 34677788887776544 334889999999998764
No 146
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.69 E-value=41 Score=27.52 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.5
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
-.+++.+||++||.|.|.-
T Consensus 38 p~dA~~~GI~dGd~V~v~s 56 (156)
T cd02783 38 PKTAKELGIKDGDWVWVES 56 (156)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 4688999999999998874
No 147
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.66 E-value=40 Score=25.47 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=16.2
Q ss_pred CCCccccCCCCCcEEEEEec
Q 027888 196 EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~k 215 (217)
..+.+.||+.+||.|.|.-.
T Consensus 37 p~dA~~lgI~dGd~V~v~s~ 56 (112)
T cd02787 37 PDDIARLGLKAGDRVDLESA 56 (112)
T ss_pred HHHHHHhCCCCCCEEEEEec
Confidence 34588999999999988743
No 148
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=22.17 E-value=1.3e+02 Score=25.74 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=55.4
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.+.+-+........+...-.+.-|+++..=|++|-|.+|.+.-|-.+.++.-.-+|.+...
T Consensus 12 ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 12 TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred ceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence 4788899999999999888899999999999999999999999999999999999887653
No 149
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=22.12 E-value=25 Score=24.10 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHhhcCC--CCcceEEEECCcccCCCC---CccccCCCCCcEEEE
Q 027888 162 ADDKFERLFKMYADKVNL--DQENLVFCFDGDKIGPEA---TPASLEMEDNDIIEV 212 (217)
Q Consensus 162 ~tT~L~KLf~aYae~~gl--~~~slrF~FDG~rI~~~~---TP~sLgMEDGDiIDV 212 (217)
..+.+.+|-..-+.. ++ +.+.++.++.+..|.-+. |..+.-+.-||.|.+
T Consensus 4 ~~~~~~rLd~~L~~~-~~~~SR~~~k~li~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 4 IFTEYITLGQLLKEL-GIIDSGGQAKWFLQENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred ecchHHHHHHHHHHc-CCccCHHHHHHHHHcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 344556664444444 66 554444444333332222 244678999999976
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.55 E-value=2.4e+02 Score=27.38 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=50.6
Q ss_pred EEEEEeCCce--EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCcccCC-----CCCccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGL--KQFRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKIGP-----EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~--v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~~-----~~TP~sLgMEDGDiIDV~~k 215 (217)
.+++...+.. -...|..+-+.--+|...-.+.|+.++.++++| ||+.-.. +.---.+.++|||.|-|..+
T Consensus 338 rvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqeK 417 (418)
T KOG2982|consen 338 RVKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQEK 417 (418)
T ss_pred eeeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeecc
Confidence 4555554443 245666667778888888899999999999998 7776553 33444678999999987654
No 151
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=21.48 E-value=1e+02 Score=23.17 Aligned_cols=60 Identities=12% Similarity=0.290 Sum_probs=39.8
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCC--CccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEA--TPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~--TP~sLgMEDGDiIDV~~k 215 (217)
++.|....| +..++...|-++...| ..++.+.++|+.++..+ .--+||..-||.|.+...
T Consensus 5 ~v~I~n~~G---LHARPAa~lv~~a~~~-------~s~v~l~~~~~~~~akSil~lm~Lg~~~G~~v~i~~~ 66 (85)
T PRK10850 5 EVTITAPNG---LHTRPAAQFVKEAKGF-------TSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAE 66 (85)
T ss_pred EEEECCCCc---ccHHHHHHHHHHHHhC-------CCEEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEe
Confidence 344444444 4455555565555555 35778889998877655 344899999999998754
No 152
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.43 E-value=38 Score=26.09 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=16.1
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+.||++|||.|.|.-
T Consensus 38 p~dA~~~gi~~Gd~V~v~s 56 (124)
T cd02785 38 PIDAAARGIAHGDLVEVYN 56 (124)
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 4678899999999998764
No 153
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=21.12 E-value=4.8e+02 Score=25.52 Aligned_cols=59 Identities=27% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCccceeeeCCCcccccCCcCC-CCCcch---hhhhhhhhhHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027888 50 DIRELEVVDCEEEEEEEEDWLP-PPPKVM---VQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRKL 120 (217)
Q Consensus 50 ~~~~~~~~~~~~~~~~~edwl~-pppk~~---~~~~~~~~~~~~~lr~~k~el~~~a~s~~~~l~~v~E~~k~~~ 120 (217)
+..+.-|+.+|| +=|-- ++++.. ......+...|.+|=+|||.|+. .|+.+||.++..-
T Consensus 26 G~~~lI~csvdG-----eVrGy~~~~~~~~~~~~~~~~~~~~lreL~qkKQ~Ll~-------EL~nyEe~~~~~~ 88 (431)
T PF14782_consen 26 GKPQLICCSVDG-----EVRGYLPDTQESKGTLVDASDEQEALRELSQKKQNLLL-------ELRNYEENAKREK 88 (431)
T ss_pred CCceEEEEEcCC-----EEEEeccCccccccccccchhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhh
Confidence 445677888875 33322 333333 44444577889999999999975 4677777666544
No 154
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=21.05 E-value=32 Score=32.30 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhccCCCCcCCCCcEEEEEEeCCce-EE---EEEcC--CChHHHHHHHHHh----------hcCCCCcceE-----EEE
Q 027888 130 AESEKVSKPAIERAKIVVSIQDKGGL-KQ---FRVYA--DDKFERLFKMYAD----------KVNLDQENLV-----FCF 188 (217)
Q Consensus 130 ~~~~~~~~p~~~~~kItIkV~~qdg~-v~---FrIk~--tT~L~KLf~aYae----------~~gl~~~slr-----F~F 188 (217)
...+.+..|. ...-|+|.+.+-.+. +. ..+.+ +|....|..++|+ ..+++.+.++ ++|
T Consensus 65 ~~~~~~~aPg-s~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~ 143 (309)
T PF12754_consen 65 AFAKQTPAPG-SSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLY 143 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCCC-CCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhhee
Confidence 3344445554 345688888776553 32 34434 6888999999999 8899999999 999
Q ss_pred CCcccCCCCCccccCCC
Q 027888 189 DGDKIGPEATPASLEME 205 (217)
Q Consensus 189 DG~rI~~~~TP~sLgME 205 (217)
+..++....|-.++.=+
T Consensus 144 ~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 144 KKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp -----------------
T ss_pred cCccCCCcCcHHHHHhc
Confidence 99999888888877654
No 155
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.99 E-value=40 Score=25.61 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=15.9
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
-++++.||+++||.|.|.-
T Consensus 36 p~dA~~~gi~~Gd~V~v~s 54 (123)
T cd02778 36 PETAARLGIKDGDRVEVSS 54 (123)
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 4578899999999998864
No 156
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=20.98 E-value=1.2e+02 Score=22.33 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=37.3
Q ss_pred EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCC--CccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEA--TPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~--TP~sLgMEDGDiIDV~~k 215 (217)
+++|....| +..++...|-++.+.| ..++.+.++|..++..+ .--+||+.-||.|.+...
T Consensus 5 ~~~i~~~~G---lHaRPA~~lv~~a~~f-------~~~i~l~~~~~~vdaKSil~llsLg~~~g~~v~v~~~ 66 (82)
T PRK13782 5 RVEVSLKTG---LQARPAALFVQEANRF-------HADIFIEKDGKKVNAKSIMGLMSLAIGTGSMITIITE 66 (82)
T ss_pred EEEEcCCCc---ccHHHHHHHHHHHHhC-------CCEEEEEECCeEEecHhHHHHHhcCCCCCCEEEEEEe
Confidence 344444443 3344444444444433 34667788888887655 345899999999998753
No 157
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=20.82 E-value=48 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=16.0
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
..+++.||+++||.|.|+-
T Consensus 39 ~~dA~~lgi~~Gd~V~v~s 57 (115)
T cd02779 39 PEDAKREGLKNGDLVEVYN 57 (115)
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 3478999999999998864
No 158
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.72 E-value=3.1e+02 Score=21.26 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=34.7
Q ss_pred EEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC
Q 027888 149 IQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG 194 (217)
Q Consensus 149 V~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~ 194 (217)
+...+|+ .-+.|.++.+|..|+..-++..+.+.. +.|.| =|+.+.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edld 64 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDLD 64 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCcc
Confidence 4456776 468999999999999999999999876 55555 365543
No 159
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.70 E-value=49 Score=25.40 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=15.9
Q ss_pred CCCccccCCCCCcEEEEEe
Q 027888 196 EATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~ 214 (217)
..+...||+++||.|.|.-
T Consensus 39 p~dA~~~gi~~Gd~V~v~s 57 (130)
T cd02781 39 PETAAKLGIADGDWVWVET 57 (130)
T ss_pred HHHHHHcCCCCCCEEEEEC
Confidence 3478899999999998764
No 160
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=20.59 E-value=1.7e+02 Score=23.27 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.0
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCcccc
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASL 202 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~sL 202 (217)
..|-|..+.++..++..-.++++++++.--|+| ++...+.++|..+|
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 478999999999999999999999886655555 55433445555443
No 161
>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO [].
Probab=20.45 E-value=46 Score=23.18 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.0
Q ss_pred CCCCCCCCCCcc
Q 027888 32 TPPIPCPKRTKV 43 (217)
Q Consensus 32 ~~~~~~~kr~~~ 43 (217)
.--+||.||||.
T Consensus 19 sgrCHCsKkRK~ 30 (47)
T PF10533_consen 19 SGRCHCSKKRKS 30 (47)
T ss_pred CCcccCCCcccc
Confidence 467899999986
No 162
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=20.36 E-value=49 Score=25.59 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.7
Q ss_pred CCccccCCCCCcEEEEEe
Q 027888 197 ATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 197 ~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+.||++|||.|.|.-
T Consensus 41 ~dA~~lgi~~Gd~V~v~s 58 (127)
T cd02777 41 LDAAARGIKDGDIVRVFN 58 (127)
T ss_pred HHHHHcCCCCCCEEEEEc
Confidence 678899999999998764
No 163
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=20.14 E-value=89 Score=28.56 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=25.2
Q ss_pred cCCcCCCCC-cch-hh-------hhh-hhhhHHHHHHHhHHHHHHH
Q 027888 66 EEDWLPPPP-KVM-VQ-------KQL-VEDSAIKELRLKKQELVSF 101 (217)
Q Consensus 66 ~edwl~ppp-k~~-~~-------~~~-~~~~~~~~lr~~k~el~~~ 101 (217)
+-+|..||| |+. ++ .++ +.+..++-||.++|-|+.-
T Consensus 112 ~t~~~~~~~~k~~t~P~~~~~~d~~~edk~~~~~~l~S~~q~~~~~ 157 (284)
T COG5636 112 ETDSFKPPSFKMTTEPKVYRVVDDLMEDKEELRKLLRSKAQYMMRK 157 (284)
T ss_pred cCccccCCCccceecceEEeecccccccHHHHHHHHhhhhHhhhcc
Confidence 678999998 544 22 222 2667788889999888776
Done!