Query 027888
Match_columns 217
No_of_seqs 117 out of 417
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:01:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l76_A Nfatc2-interacting prot 99.9 2.4E-27 8.2E-32 182.5 9.5 91 125-217 4-94 (95)
2 3kyd_D Small ubiquitin-related 99.9 5.4E-25 1.9E-29 174.3 9.9 77 141-217 37-114 (115)
3 2jxx_A Nfatc2-interacting prot 99.9 2.1E-24 7.3E-29 166.1 9.1 73 141-213 22-96 (97)
4 2io0_B Small ubiquitin-related 99.9 1.7E-23 5.9E-28 158.3 9.8 77 141-217 2-79 (91)
5 3a4r_A Nfatc2-interacting prot 99.9 2.9E-23 9.8E-28 152.5 9.4 75 138-213 2-78 (79)
6 1wm3_A Ubiquitin-like protein 99.9 2.8E-23 9.5E-28 149.5 8.9 71 144-214 1-72 (72)
7 2d07_B Ubiquitin-like protein 99.9 4.5E-23 1.5E-27 156.0 9.9 77 141-217 14-91 (93)
8 2eke_C Ubiquitin-like protein 99.9 4.4E-23 1.5E-27 160.8 10.0 78 139-217 26-104 (106)
9 3tix_A Ubiquitin-like protein 99.9 3.9E-23 1.3E-27 177.1 8.4 83 135-217 47-130 (207)
10 1wz0_A Ubiquitin-like protein 99.9 9E-23 3.1E-27 158.1 9.4 77 141-217 21-98 (104)
11 2io1_B Small ubiquitin-related 99.9 1.3E-22 4.3E-27 154.1 9.1 78 140-217 3-81 (94)
12 2k8h_A Small ubiquitin protein 99.9 9.7E-23 3.3E-27 159.6 7.3 78 140-217 22-100 (110)
13 3pge_A SUMO-modified prolifera 99.9 2.6E-22 8.9E-27 171.8 10.1 83 135-217 19-102 (200)
14 3v7o_A Minor nucleoprotein VP3 99.8 2.2E-22 7.5E-27 174.5 0.0 76 141-217 18-94 (227)
15 3uf8_A Ubiquitin-like protein 99.8 2.6E-20 8.8E-25 158.5 9.4 77 141-217 18-94 (209)
16 4da1_A Protein phosphatase 1K, 99.8 3.3E-21 1.1E-25 175.3 0.0 78 140-217 26-103 (389)
17 3ix6_A TS, tsase, thymidylate 99.8 1.7E-20 5.7E-25 172.6 0.0 77 141-217 18-94 (360)
18 3goe_A DNA repair protein RAD6 99.8 1.7E-18 5.9E-23 129.5 9.4 73 142-214 7-81 (82)
19 2uyz_B Small ubiquitin-related 99.5 1.4E-13 4.7E-18 98.2 8.0 75 143-217 2-77 (79)
20 1wyw_B Ubiquitin-like protein 99.4 5.1E-13 1.7E-17 100.2 8.4 78 140-217 17-95 (97)
21 3dbh_I NEDD8; cell cycle, acti 98.9 1.3E-08 4.5E-13 73.1 9.4 76 141-216 9-85 (88)
22 3n3k_B Ubiquitin; hydrolase, p 98.8 1.2E-08 4.1E-13 72.7 8.4 74 143-216 2-76 (85)
23 3v6c_B Ubiquitin; structural g 98.8 2.9E-08 1E-12 72.7 10.1 76 141-216 14-90 (91)
24 3mtn_B UBA80, ubcep1, ubiquiti 98.8 3.4E-08 1.2E-12 70.1 9.3 74 143-216 2-76 (85)
25 1ttn_A DC-UBP, dendritic cell- 98.8 3.1E-08 1.1E-12 75.1 9.0 82 135-216 14-96 (106)
26 3phx_B Ubiquitin-like protein 98.8 5.2E-08 1.8E-12 69.0 9.6 74 143-216 3-77 (79)
27 3a9j_A Ubiquitin; protein comp 98.8 4.7E-08 1.6E-12 67.7 9.1 71 146-216 2-73 (76)
28 1ndd_A NEDD8, protein (ubiquit 98.8 4.7E-08 1.6E-12 67.7 8.9 71 146-216 2-73 (76)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 98.8 6.1E-08 2.1E-12 69.7 9.7 76 141-216 4-80 (87)
30 4hcn_B Polyubiquitin, ubiquiti 98.7 3.7E-08 1.3E-12 73.5 8.6 76 141-216 19-95 (98)
31 2bwf_A Ubiquitin-like protein 98.7 9E-08 3.1E-12 66.9 10.0 71 145-216 5-76 (77)
32 2dzi_A Ubiquitin-like protein 98.7 6.7E-08 2.3E-12 68.2 9.0 75 141-215 4-79 (81)
33 3k9o_B Ubiquitin, UBB+1; E2-25 98.7 7.8E-08 2.7E-12 70.5 9.1 72 145-216 2-74 (96)
34 3vdz_A Ubiquitin-40S ribosomal 98.7 1.3E-07 4.4E-12 72.4 10.0 76 141-216 32-108 (111)
35 2faz_A Ubiquitin-like containi 98.6 2.5E-07 8.5E-12 65.2 10.0 74 144-217 2-78 (78)
36 2ojr_A Ubiquitin; lanthide-bin 98.6 2.9E-07 9.9E-12 70.2 10.2 75 142-216 33-108 (111)
37 1wx7_A Ubiquilin 3; ubiquitin- 98.6 3.3E-07 1.1E-11 69.1 10.1 76 141-216 14-89 (106)
38 1yx5_B Ubiquitin; proteasome, 98.6 2.6E-07 8.9E-12 68.4 9.2 71 146-216 2-73 (98)
39 4dwf_A HLA-B-associated transc 98.6 4E-07 1.4E-11 66.0 9.7 74 142-216 3-77 (90)
40 1wx8_A Riken cDNA 4931431F19; 98.6 1.9E-07 6.3E-12 68.9 7.8 76 141-216 14-89 (96)
41 2hj8_A Interferon-induced 17 k 98.6 1.9E-07 6.5E-12 68.2 7.8 74 143-216 3-77 (88)
42 1sif_A Ubiquitin; hydrophobic 98.5 3.4E-07 1.2E-11 66.9 8.4 72 145-216 10-82 (88)
43 1wy8_A NP95-like ring finger p 98.5 6.9E-07 2.4E-11 64.5 9.6 76 141-216 4-82 (89)
44 2klc_A Ubiquilin-1; ubiquitin- 98.5 8.9E-07 3E-11 66.7 10.4 75 142-216 23-97 (101)
45 1j8c_A Ubiquitin-like protein 98.5 9.8E-07 3.3E-11 69.3 11.0 76 141-216 29-104 (125)
46 1yqb_A Ubiquilin 3; structural 98.5 7.1E-07 2.4E-11 67.2 9.7 76 141-216 19-94 (100)
47 4fbj_B NEDD8; effector-HOST ta 98.5 5.9E-07 2E-11 65.6 8.8 71 146-216 2-73 (88)
48 2wyq_A HHR23A, UV excision rep 98.5 1.2E-06 4.3E-11 62.4 9.9 74 143-216 4-81 (85)
49 2l7r_A Ubiquitin-like protein 98.4 5.1E-07 1.7E-11 66.8 7.3 74 142-216 17-90 (93)
50 3b08_A Polyubiquitin-C, ubiqui 98.4 1.3E-06 4.4E-11 67.8 9.9 73 144-216 76-149 (152)
51 4eew_A Large proline-rich prot 98.4 1.5E-06 5.2E-11 62.7 9.3 72 142-214 15-87 (88)
52 3m62_B UV excision repair prot 98.4 7.1E-07 2.4E-11 67.8 7.4 72 145-216 2-74 (106)
53 1uel_A HHR23B, UV excision rep 98.4 2E-06 6.9E-11 63.6 9.3 71 146-216 2-76 (95)
54 1wia_A Hypothetical ubiquitin- 98.4 2E-06 6.9E-11 63.2 8.9 73 141-216 4-78 (95)
55 3plu_A Ubiquitin-like modifier 98.3 2.5E-06 8.6E-11 65.1 9.2 74 141-214 18-92 (93)
56 3m63_B Ubiquitin domain-contai 98.3 4.3E-07 1.5E-11 68.6 4.7 76 141-216 25-100 (101)
57 3u30_A Ubiquitin, linear DI-ub 98.3 5.4E-06 1.9E-10 66.9 10.4 75 141-215 17-92 (172)
58 2kan_A Uncharacterized protein 98.2 5.8E-06 2E-10 61.5 9.1 76 141-216 12-88 (94)
59 3b1l_X E3 ubiquitin-protein li 97.5 1.4E-07 4.8E-12 66.0 0.0 70 146-215 2-72 (76)
60 3rt3_B Ubiquitin-like protein 98.2 8E-06 2.7E-10 64.7 10.0 75 142-216 79-154 (159)
61 3b08_A Polyubiquitin-C, ubiqui 98.2 6.3E-06 2.1E-10 63.9 9.0 71 146-216 2-73 (152)
62 4a20_A Ubiquitin-like protein 98.2 7.6E-06 2.6E-10 62.1 9.2 76 141-216 16-96 (98)
63 2daf_A FLJ35834 protein; hypot 98.2 4.5E-06 1.5E-10 66.3 8.0 76 141-216 12-89 (118)
64 2kdi_A Ubiquitin, vacuolar pro 98.2 7.9E-06 2.7E-10 62.9 9.2 73 144-216 9-82 (114)
65 2kk8_A Uncharacterized protein 98.2 6.3E-06 2.1E-10 60.2 8.1 74 142-215 8-83 (84)
66 2kd0_A LRR repeats and ubiquit 98.2 1.5E-05 5.2E-10 58.0 9.9 72 145-216 13-84 (85)
67 3l0w_B Monoubiquitinated proli 98.1 1.1E-05 3.8E-10 66.2 9.3 71 146-216 2-73 (169)
68 1we6_A Splicing factor, putati 98.1 1.3E-05 4.6E-10 60.8 9.2 74 143-216 26-104 (111)
69 1we7_A SF3A1 protein; structur 98.1 1.3E-05 4.4E-10 61.4 9.0 74 143-216 24-108 (115)
70 1uh6_A Ubiquitin-like 5; beta- 98.1 1.2E-05 4.2E-10 61.7 8.3 74 141-214 25-99 (100)
71 1wxv_A BAG-family molecular ch 98.1 1.7E-05 5.8E-10 57.9 8.6 74 142-215 5-84 (92)
72 1wgg_A Ubiquitin carboxyl-term 98.1 1.9E-05 6.4E-10 59.1 8.5 74 141-215 4-78 (96)
73 1x1m_A Ubiquitin-like protein 98.0 1.6E-05 5.4E-10 60.3 7.8 73 144-216 12-100 (107)
74 1v86_A DNA segment, CHR 7, way 98.0 1.3E-05 4.5E-10 59.6 6.9 74 141-215 14-87 (95)
75 1wgd_A Homocysteine-responsive 98.0 2.6E-05 9E-10 57.1 8.0 75 142-216 5-86 (93)
76 3q3f_A Ribonuclease/ubiquitin 98.0 2.1E-05 7.3E-10 66.3 8.4 73 144-216 105-178 (189)
77 3u5e_m 60S ribosomal protein L 98.0 9.6E-07 3.3E-11 69.0 0.0 71 146-216 2-73 (128)
78 1v5o_A 1700011N24RIK protein; 98.0 3.1E-05 1.1E-09 58.0 8.0 74 143-216 6-85 (102)
79 1v5t_A 8430435I17RIK protein; 97.9 2.9E-05 1E-09 56.9 7.0 73 143-215 6-82 (90)
80 1wf9_A NPL4 family protein; be 97.8 4.8E-05 1.6E-09 57.7 7.3 75 141-215 4-94 (107)
81 1wju_A NEDD8 ultimate buster-1 97.8 8.4E-05 2.9E-09 57.0 8.3 73 142-214 13-90 (100)
82 3u30_A Ubiquitin, linear DI-ub 97.8 8.7E-05 3E-09 59.8 8.6 72 144-215 96-168 (172)
83 3u5c_f 40S ribosomal protein S 97.8 3.5E-06 1.2E-10 68.7 0.0 71 146-216 2-73 (152)
84 3rt3_B Ubiquitin-like protein 97.7 0.00018 6.2E-09 56.8 9.2 71 145-215 3-76 (159)
85 2lxa_A Ubiquitin-like protein 97.7 5.9E-05 2E-09 55.9 5.9 72 145-216 2-78 (87)
86 2kzr_A Ubiquitin thioesterase 97.7 7.8E-05 2.7E-09 54.1 6.3 70 146-215 2-77 (86)
87 1v2y_A 3300001G02RIK protein; 97.7 5.7E-05 2E-09 58.2 5.6 76 140-215 3-95 (105)
88 4dbg_A Ranbp-type and C3HC4-ty 97.7 0.0003 1E-08 54.4 9.6 74 142-215 22-99 (105)
89 1v6e_A Cytoskeleton-associated 97.7 0.00022 7.6E-09 52.7 8.6 73 142-214 5-86 (95)
90 1t0y_A Tubulin folding cofacto 97.6 0.00034 1.2E-08 54.2 9.4 74 141-214 3-85 (122)
91 2kjr_A CG11242; UBL, ubiquitin 97.6 0.00037 1.2E-08 52.3 8.5 73 141-213 12-93 (95)
92 2kj6_A Tubulin folding cofacto 97.5 0.0005 1.7E-08 51.9 8.0 74 141-214 11-94 (97)
93 2fnj_B Transcription elongatio 97.4 0.0005 1.7E-08 54.2 8.2 71 145-215 3-80 (118)
94 1wgh_A Ubiquitin-like 3, HCG-1 97.4 0.0012 4E-08 51.6 10.0 73 141-213 13-94 (116)
95 3ai5_A Yeast enhanced green fl 97.4 0.00057 1.9E-08 61.6 9.3 75 142-216 231-306 (307)
96 2gow_A HCG-1 protein, ubiquiti 97.4 0.0007 2.4E-08 53.5 8.3 73 141-213 14-95 (125)
97 4ajy_B Transcription elongatio 97.4 0.0011 3.8E-08 52.4 9.3 71 145-215 3-80 (118)
98 1oqy_A HHR23A, UV excision rep 97.3 0.00039 1.3E-08 63.9 7.3 74 142-215 5-82 (368)
99 2kdb_A Homocysteine-responsive 97.3 0.00058 2E-08 51.7 6.8 72 141-212 20-98 (99)
100 1wjn_A Tubulin-folding protein 97.2 0.002 6.9E-08 47.5 9.1 75 141-215 6-92 (97)
101 2pjh_A Protein NPL4, nuclear p 97.2 0.00031 1.1E-08 51.1 4.2 70 144-213 4-78 (80)
102 4b6w_A Tubulin-specific chaper 97.0 0.0041 1.4E-07 45.6 8.5 72 144-215 2-83 (86)
103 1se9_A Ubiquitin family; ubiqu 96.9 0.005 1.7E-07 49.0 8.7 68 142-209 14-90 (126)
104 2dzj_A Synaptic glycoprotein S 96.8 0.0033 1.1E-07 46.2 6.8 71 142-212 8-85 (88)
105 3shq_A UBLCP1; phosphatase, hy 96.7 0.0043 1.5E-07 55.7 8.2 74 142-215 3-79 (320)
106 2al3_A TUG long isoform; TUG U 96.1 0.014 4.8E-07 44.2 6.4 70 146-215 11-81 (90)
107 2dzm_A FAS-associated factor 1 95.8 0.02 6.7E-07 43.5 6.2 71 144-214 9-80 (100)
108 2bps_A YUKD protein; ubiquitin 95.8 0.023 7.9E-07 42.0 6.3 71 142-212 2-80 (81)
109 2xzm_9 RPS31E; ribosome, trans 94.8 0.0051 1.8E-07 52.0 0.0 64 147-215 3-67 (189)
110 1ryj_A Unknown; beta/alpha pro 94.5 0.32 1.1E-05 33.9 8.8 62 144-214 4-65 (70)
111 3qx1_A FAS-associated factor 1 91.9 1.5 5E-05 31.3 9.1 72 142-214 5-82 (84)
112 3jyu_A Ubiquitin carboxyl-term 91.5 1.5 5.1E-05 37.2 10.2 72 144-215 139-220 (231)
113 2cr5_A Reproduction 8; UBX dom 91.4 0.88 3E-05 34.4 7.8 77 136-213 15-96 (109)
114 3rpf_C Molybdopterin convertin 90.3 1 3.4E-05 31.3 6.7 52 158-214 16-69 (74)
115 4efo_A Serine/threonine-protei 89.6 1.2 4E-05 33.7 7.0 51 144-194 12-64 (94)
116 2daj_A KIAA0977 protein, COBL- 88.5 1.4 4.9E-05 33.2 6.7 66 141-206 7-76 (91)
117 2kvr_A Ubiquitin carboxyl-term 87.6 1 3.6E-05 35.4 5.8 44 156-199 58-101 (130)
118 4a3p_A Ubiquitin carboxyl-term 87.4 2.5 8.4E-05 35.4 8.4 72 144-215 127-208 (217)
119 1oey_A P67-PHOX, neutrophil cy 86.1 1.9 6.5E-05 31.9 6.1 48 143-191 4-51 (83)
120 2dzk_A UBX domain-containing p 86.1 6.1 0.00021 29.7 9.2 75 140-214 9-89 (109)
121 1wj6_A KIAA0049 protein, RSGI 85.1 3.7 0.00013 31.6 7.5 62 134-197 4-70 (101)
122 1vd2_A Protein kinase C, IOTA 84.8 4.2 0.00014 30.2 7.6 47 142-188 4-51 (89)
123 1j0g_A Hypothetical protein 18 83.7 4.7 0.00016 30.2 7.3 74 141-214 7-85 (92)
124 1wj4_A KIAA0794 protein; UBX d 80.5 6.9 0.00023 30.2 7.6 72 141-213 40-117 (124)
125 2l32_A Small archaeal modifier 79.5 3.9 0.00013 28.9 5.4 60 144-214 2-61 (74)
126 2hj1_A Hypothetical protein; s 79.2 7.6 0.00026 29.1 7.2 67 143-214 11-84 (97)
127 2bkf_A Zinc-finger protein NBR 75.9 9.6 0.00033 28.5 6.8 52 142-195 4-60 (87)
128 3po0_A Small archaeal modifier 75.1 13 0.00046 26.0 7.3 55 155-214 19-84 (89)
129 2ylm_A Ubiquitin carboxyl-term 74.6 2.9 9.9E-05 39.6 4.6 37 156-192 38-74 (530)
130 1y8x_B Ubiquitin-activating en 72.1 4.7 0.00016 30.4 4.4 58 156-213 7-82 (98)
131 1vjk_A Molybdopterin convertin 68.4 27 0.00094 25.1 7.8 55 155-214 28-93 (98)
132 3w1s_C Ubiquitin-like protein 67.6 14 0.00049 27.3 6.2 59 141-201 5-69 (91)
133 2g1e_A Hypothetical protein TA 67.4 24 0.00082 24.5 7.1 56 158-214 19-85 (90)
134 2ylm_A Ubiquitin carboxyl-term 65.6 3.8 0.00013 38.8 3.3 74 141-214 127-216 (530)
135 1ef1_A Moesin; membrane, FERM 64.4 38 0.0013 28.4 9.1 45 144-188 1-46 (294)
136 1f0z_A THis protein; ubiquitin 64.1 8.7 0.0003 25.9 4.1 52 158-214 10-61 (66)
137 1tyg_B YJBS; alpha beta barrel 62.9 10 0.00036 27.7 4.6 53 157-214 29-82 (87)
138 2cu3_A Unknown function protei 62.4 13 0.00044 24.9 4.7 48 162-214 12-59 (64)
139 1h4r_A Merlin; FERM, neurofibr 62.2 44 0.0015 28.5 9.1 62 141-202 19-85 (314)
140 1fm0_D Molybdopterin convertin 62.1 15 0.0005 25.1 5.1 49 161-214 23-76 (81)
141 2q5w_D Molybdopterin convertin 61.9 8.8 0.0003 26.1 3.8 53 156-214 18-72 (77)
142 1wz3_A Autophagy 12B, ATG12B, 61.3 9 0.00031 28.7 4.0 60 141-202 10-75 (96)
143 4gdk_A Ubiquitin-like protein 61.2 13 0.00046 27.4 4.9 71 142-213 3-84 (91)
144 2kl0_A Putative thiamin biosyn 57.9 7.5 0.00026 27.3 2.9 48 162-214 13-60 (73)
145 3ge3_C Toluene-4-monooxygenase 55.2 61 0.0021 24.0 8.2 60 156-215 17-83 (84)
146 1rws_A Hypothetical protein PF 52.0 6.6 0.00023 27.4 1.8 48 158-214 25-72 (77)
147 3pvl_A Myosin VIIA isoform 1; 51.4 64 0.0022 31.3 9.2 78 105-188 230-309 (655)
148 2i1j_A Moesin; FERM, coiled-co 48.8 33 0.0011 32.7 6.6 47 142-188 2-49 (575)
149 3dwg_C 9.5 kDa culture filtrat 47.1 36 0.0012 23.9 5.2 52 162-214 24-88 (93)
150 2kc2_A Talin-1, F1; FERM, adhe 45.3 30 0.001 27.2 4.8 42 146-187 13-56 (128)
151 1q1o_A Cell division control p 45.2 32 0.0011 26.0 4.8 45 144-188 5-62 (98)
152 1s3s_G P47 protein; AAA ATPase 44.8 52 0.0018 25.2 6.1 69 143-211 51-124 (127)
153 2k5p_A THis protein, thiamine- 42.6 10 0.00035 27.0 1.6 52 158-214 10-64 (78)
154 3hvz_A Uncharacterized protein 41.6 57 0.0019 23.1 5.5 62 147-216 8-69 (78)
155 1ip9_A BEM1 protein; ubiquitin 41.5 1E+02 0.0036 22.7 7.3 48 143-191 11-58 (85)
156 3qwx_X Cell death abnormality 41.5 41 0.0014 26.2 5.2 70 142-215 46-148 (174)
157 2inc_C TOUB protein; DIIRON, 4 40.5 1.1E+02 0.0037 22.6 9.1 60 156-215 15-82 (83)
158 3qij_A Protein 4.1; cytoskelet 40.3 45 0.0015 28.5 5.6 48 141-188 14-63 (296)
159 2l52_A Methanosarcina acetivor 39.5 72 0.0025 23.0 5.9 51 163-214 27-94 (99)
160 3ivf_A Talin-1; FERM domain, c 37.9 58 0.002 28.5 6.1 47 142-188 83-131 (371)
161 2juo_A GA-binding protein alph 35.9 97 0.0033 23.1 6.0 56 157-212 6-61 (89)
162 2kmm_A Guanosine-3',5'-BIS(dip 34.4 72 0.0024 21.0 4.8 61 147-215 3-63 (73)
163 2w2s_A Matrix protein; viral a 32.7 10 0.00036 31.5 0.3 14 64-77 27-40 (202)
164 2qjl_A URM1, ubiquitin-related 32.3 1.2E+02 0.0041 21.6 6.1 55 156-214 22-94 (99)
165 3u7z_A Putative metal binding 30.8 87 0.003 23.5 5.2 69 141-215 5-98 (101)
166 2eyz_A V-CRK sarcoma virus CT1 30.7 86 0.003 26.8 5.9 68 144-215 46-164 (304)
167 1gcq_C VAV proto-oncogene; SH3 30.2 19 0.00064 23.9 1.2 28 188-215 13-40 (70)
168 3qwy_A Cell death abnormality 29.8 2.2E+02 0.0076 24.1 8.3 68 144-215 77-177 (308)
169 1wmh_B Partitioning defective- 26.5 1.9E+02 0.0066 21.2 6.8 53 142-194 4-61 (86)
170 2r2q_A Gamma-aminobutyric acid 24.2 2.2E+02 0.0076 21.1 6.6 47 156-202 46-93 (110)
171 1v8c_A MOAD related protein; r 23.9 1.4E+02 0.0049 23.8 5.7 54 159-214 19-82 (168)
172 3au4_A Myosin-X; protein-prote 22.5 2.2E+02 0.0076 26.2 7.4 48 142-189 214-264 (555)
173 2dhz_A RAP guanine nucleotide 22.0 1.3E+02 0.0044 23.5 4.8 54 141-194 6-69 (120)
174 3rui_B Autophagy-related prote 22.0 1.1E+02 0.0038 23.4 4.4 46 156-201 49-95 (118)
175 3ivf_A Talin-1; FERM domain, c 21.5 4E+02 0.014 23.0 9.1 72 144-215 3-84 (371)
176 1gri_A Growth factor bound pro 21.5 3E+02 0.01 21.6 8.9 67 144-215 94-188 (217)
177 2fpe_A C-JUN-amino-terminal ki 21.1 63 0.0021 20.7 2.5 18 197-214 15-32 (62)
178 2zjd_A Microtubule-associated 20.8 1.7E+02 0.0059 22.7 5.4 57 156-213 55-118 (130)
179 2lj0_A Sorbin and SH3 domain-c 20.4 65 0.0022 21.7 2.5 20 196-215 17-36 (65)
No 1
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.94 E-value=2.4e-27 Score=182.52 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=80.8
Q ss_pred chhhhhhhccCCCCcCCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCC
Q 027888 125 PAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM 204 (217)
Q Consensus 125 ~~e~~~~~~~~~~p~~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgM 204 (217)
.++++++++++. |. .+.+|+|+|++.+++++|+||++|+|+|||++||++.|++++++||+|||.||++++||++|||
T Consensus 4 ~~~~~~~~~~~~-~~-~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~m 81 (95)
T 2l76_A 4 EDEVVLVEGPTL-PE-TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKL 81 (95)
T ss_dssp CCCCCSSSCCCC-CS-CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTC
T ss_pred cccEEEecCCCC-CC-CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCC
Confidence 456666666654 43 5788999999766679999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeccC
Q 027888 205 EDNDIIEVHTKKT 217 (217)
Q Consensus 205 EDGDiIDV~~kQ~ 217 (217)
||||+|||++-.|
T Consensus 82 eD~DiID~~~~~~ 94 (95)
T 2l76_A 82 GVADIIDCVVLTS 94 (95)
T ss_dssp CSSCEEEEEECCC
T ss_pred CCCCEEEEEEecC
Confidence 9999999998654
No 2
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.92 E-value=5.4e-25 Score=174.27 Aligned_cols=77 Identities=26% Similarity=0.476 Sum_probs=73.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
++.+|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|.
T Consensus 37 ~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 578999999999885 89999999999999999999999999999999999999999999999999999999999985
No 3
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=166.05 Aligned_cols=73 Identities=29% Similarity=0.497 Sum_probs=70.6
Q ss_pred CCCcEEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888 141 ERAKIVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 141 ~~~kItIkV~~qdg-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
++.+|+|+|+++++ + ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999999998 3 7999999999999999999999999999999999999999999999999999999997
No 4
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=1.7e-23 Score=158.33 Aligned_cols=77 Identities=32% Similarity=0.588 Sum_probs=72.7
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
++++|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 367899999999886 89999999999999999999999999999999999999999999999999999999999985
No 5
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.89 E-value=2.9e-23 Score=152.47 Aligned_cols=75 Identities=28% Similarity=0.522 Sum_probs=71.7
Q ss_pred CcCCCCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888 138 PAIERAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 138 p~~~~~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
|. ++.+|+|+|++++| .++|+|+++|+|++||++||++.|++++++||+|+|++|.+++||++|+|+|||+|+|+
T Consensus 2 p~-~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 2 PL-GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TT-CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CC-CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 55 78999999999888 38999999999999999999999999999999999999999999999999999999997
No 6
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.89 E-value=2.8e-23 Score=149.52 Aligned_cols=71 Identities=34% Similarity=0.611 Sum_probs=68.6
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 599999999886 89999999999999999999999999999999999999999999999999999999985
No 7
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.89 E-value=4.5e-23 Score=155.96 Aligned_cols=77 Identities=32% Similarity=0.591 Sum_probs=73.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
.+.+|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|+|++|.+++||.+|+|+|||+|+|+++|+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 578999999998886 89999999999999999999999999999999999999999999999999999999999985
No 8
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.89 E-value=4.4e-23 Score=160.78 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=73.5
Q ss_pred cCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 139 AIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 139 ~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
..++.+|+|+|++ +|. ++|+|+++|+|++||++||++.|++++++||+|+|++|.+++||++|+|+|||+|+|+++|+
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 4478899999999 775 89999999999999999999999999999999999999999999999999999999999985
No 9
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.9e-23 Score=177.15 Aligned_cols=83 Identities=30% Similarity=0.537 Sum_probs=72.0
Q ss_pred CCCCc-CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888 135 VSKPA-IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 135 ~~~p~-~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
..+|. .++.+|+|+|+..+..++|+|+++|+|+|||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+
T Consensus 47 d~KP~~dp~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~ 126 (207)
T 3tix_A 47 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAH 126 (207)
T ss_dssp --------CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEEC
T ss_pred CCCCCCCCCCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 44443 36899999998544458999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 027888 214 TKKT 217 (217)
Q Consensus 214 ~kQ~ 217 (217)
++|+
T Consensus 127 leQ~ 130 (207)
T 3tix_A 127 REQI 130 (207)
T ss_dssp CCCC
T ss_pred Eecc
Confidence 9985
No 10
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=9e-23 Score=158.05 Aligned_cols=77 Identities=32% Similarity=0.591 Sum_probs=74.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
.+.+|+|+|++++|. ++|+|+++|+|.+||++||++.|++++++||+|+|++|.+++||.+|+|+|||+|+|+++|+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 578999999998886 89999999999999999999999999999999999999999999999999999999999885
No 11
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=1.3e-22 Score=154.12 Aligned_cols=78 Identities=32% Similarity=0.562 Sum_probs=72.6
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
+++++|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|+|++|.+++||++|+|+|||+|+|+++|+
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3578999999998886 89999999999999999999999999999999999999999999999999999999999884
No 12
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.87 E-value=9.7e-23 Score=159.64 Aligned_cols=78 Identities=29% Similarity=0.543 Sum_probs=74.8
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
.++.+|+|+|++++|. ++|+|+++|+|++||++||++.|+++.++||+|||++|.+++||++|+|+|||+|+|++.|+
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 3678999999999886 89999999999999999999999999999999999999999999999999999999999885
No 13
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.6e-22 Score=171.82 Aligned_cols=83 Identities=30% Similarity=0.535 Sum_probs=72.9
Q ss_pred CCCCc-CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888 135 VSKPA-IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 135 ~~~p~-~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
..+|. .++.+|+|+|+..++.++|+|+++|+|++||++||++.|++++++||+|||++|++++||++|+|+|||+|+|+
T Consensus 19 ~~kp~~~~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 19 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp ------CCCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred ccCCCCCCCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 34442 46899999998533458999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 027888 214 TKKT 217 (217)
Q Consensus 214 ~kQ~ 217 (217)
++|.
T Consensus 99 ~~q~ 102 (200)
T 3pge_A 99 REQI 102 (200)
T ss_dssp ECCS
T ss_pred eccC
Confidence 9984
No 14
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.83 E-value=2.2e-22 Score=174.50 Aligned_cols=76 Identities=30% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
++++|+|+| +++|. ++|+|+++|||+|||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 578999999 77765 89999999999999999999999999999999999999999999999999999999999984
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.82 E-value=2.6e-20 Score=158.54 Aligned_cols=77 Identities=30% Similarity=0.552 Sum_probs=73.5
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
.+++|+|+|++.++.++|+|+++|+|+|||++||++.|++++++||+|||++|++++||++|+|+|||+|+|+.+|.
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 68999999998555689999999999999999999999999999999999999999999999999999999999984
No 16
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.80 E-value=3.3e-21 Score=175.27 Aligned_cols=78 Identities=28% Similarity=0.528 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 140 IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
..+.+|+|+|++.+.+++|+|+++|+|+|||++||+++|++++++||+|+|++|++++||++|+|||||+|+|+++|+
T Consensus 26 ~~~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 26 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence 367899999998555689999999999999999999999999999999999999999999999999999999999985
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.77 E-value=1.7e-20 Score=172.63 Aligned_cols=77 Identities=30% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
++++|+|+|++++++++|+|+++|+|+|||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+.+|+
T Consensus 18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 57899999998655689999999999999999999999999999999999999999999999999999999999984
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.76 E-value=1.7e-18 Score=129.53 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCcEEEEEEeCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCc-ceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 142 RAKIVVSIQDKGG-LKQFRVYADDKFERLFKMYADKVNLDQE-NLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 142 ~~kItIkV~~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~-slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...|++-+++... .+.|+|++++++.+||++||.+.|++++ ++||.|||.||.+++||.+++|+|||.|+|++
T Consensus 7 ~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred hHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3568888887665 4999999999999999999999999998 99999999999999999999999999999986
No 19
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.47 E-value=1.4e-13 Score=98.20 Aligned_cols=75 Identities=27% Similarity=0.490 Sum_probs=70.6
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
++|+|.|.+.+|. +.|.|.+++++..|++.|+++.|++++..||+|+|+.|.++.|+.+++|++||+|++++++.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4689999998875 78999999999999999999999999999999999999999999999999999999998763
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.42 E-value=5.1e-13 Score=100.24 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=72.1
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
.++..|.|.|...+|. +.|.|.+++++..|+..|+++.|++++..||+|+|++|..+.|+.+++|++|++|++++++.
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 3567899999998876 78999999999999999999999999999999999999999999999999999999998763
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.87 E-value=1.3e-08 Score=73.06 Aligned_cols=76 Identities=13% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
....+.|.|...+|. +.+.|.++++...|...++++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 567799999987775 7899999999999999999999999999999999999999999999999999999998765
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.85 E-value=1.2e-08 Score=72.68 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=67.2
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..+.|.|...++. +.+.|.++++...|...++++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 3577888877765 7899999999999999999999999999999999999999999999999999999999875
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.83 E-value=2.9e-08 Score=72.68 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
....+.|.|...+|. +.+.|..+++...|....+++.|++++..|++|+|..+..+.|..++|+.+|++|.+.++-
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 467889999987775 7899999999999999999999999999999999999999999999999999999998764
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.79 E-value=3.4e-08 Score=70.13 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=68.2
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..+.|.|...++. +.+.|.++++...|...++++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence 4578888887775 6899999999999999999999999999999999999999999999999999999998865
No 25
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.77 E-value=3.1e-08 Score=75.07 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888 135 VSKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 135 ~~~p~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
++++......+.|.|...+|. +.+.|..+++...|....+.+.|++++..||+|.|+.|..+.|-.++|+.+|++|.++
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 343333677899999987775 6899999999999999999999999999999999999999999999999999999998
Q ss_pred ecc
Q 027888 214 TKK 216 (217)
Q Consensus 214 ~kQ 216 (217)
..+
T Consensus 94 ~~~ 96 (106)
T 1ttn_A 94 VSQ 96 (106)
T ss_dssp CCC
T ss_pred EeC
Confidence 765
No 26
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.77 E-value=5.2e-08 Score=69.03 Aligned_cols=74 Identities=7% Similarity=0.182 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..+.|.|...+|. +.+.|.++++...|....+++.|++++..|++|+|..+..+.|..++++++|++|.+.++.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4688888887775 6899999999999999999999999999999999999999999999999999999998764
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.77 E-value=4.7e-08 Score=67.69 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=65.2
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....++..|++++..+++|+|+.+..+.|-.++++.+|++|.+.++.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 5677776665 7899999999999999999999999999999999999999999999999999999998865
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.76 E-value=4.7e-08 Score=67.68 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=65.3
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.+.++++...|...++++.|++++..+++|+|+.+..+.|-.++++.+|++|.+..+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 5677776665 7899999999999999999999999999999999999999999999999999999998764
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.75 E-value=6.1e-08 Score=69.71 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+...+.|.|...++. +.+.|.++++...|...++++.|++++..||+|+|+.|..+.|..++++.+|++|.++.+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 345688899887765 6899999999999999999999999999999999999999999999999999999998764
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=3.7e-08 Score=73.47 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.+..+.|.|...+|. +.+.|.++++...|....+++.|++++..||+|+|+.|..+.|..++++++|++|.+.++.
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 566788888887775 7899999999999999999999999999999999999999999999999999999998875
No 31
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.74 E-value=9e-08 Score=66.87 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=65.6
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.|.|.. +|. +.+.|..+++...|....++..|++++..|++|+|+.+..+.|-.++|+.+|++|.+..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6778877 554 6899999999999999999999999999999999999999999999999999999998765
No 32
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.7e-08 Score=68.16 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=68.5
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
+...+.|.|...+|. +.+.|..+++...|....+++.|++++..+++|+|+.+..+.|-.++|+.+|++|.++++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 456788888877765 689999999999999999999999999999999999999999999999999999999875
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.70 E-value=7.8e-08 Score=70.47 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=65.7
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.|.|...+|. +.+.|..+++...|....+++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 45667776665 6899999999999999999999999999999999999999999999999999999998764
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.68 E-value=1.3e-07 Score=72.45 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
....+.|.|...+|. +.|.|.++++...|...++++.|+++...||+|+|+.|..+.|..++++.+|++|.++++.
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 345789999887775 7899999999999999999999999999999999999999999999999999999999875
No 35
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.65 E-value=2.5e-07 Score=65.19 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=66.9
Q ss_pred cEEEEEEeCCce-E-EEE-EcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888 144 KIVVSIQDKGGL-K-QFR-VYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217 (217)
Q Consensus 144 kItIkV~~qdg~-v-~Fr-Ik~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~ 217 (217)
.+.|.|...+|. + .+. |.++++...|....+++.|++++..|++|+|..+..+.|-.++|+.+|++|.+..+++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 367778777664 4 788 9999999999999999999999999999999999999999999999999999998764
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.61 E-value=2.9e-07 Score=70.24 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
...+.|.|...+|. +.+.|..+++...|....+++.|++++..||+|+|+.|..+.|..++++.+|++|.+++++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 35789999887765 6899999999999999999999999999999999999999999999999999999998875
No 37
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.60 E-value=3.3e-07 Score=69.13 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=69.9
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
....|.|.|...++.+.+.|..+++...|....+++.|++++..||+|+|+.|..+.|-.++++.+|++|.++.+.
T Consensus 14 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred CCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 4567899998877777899999999999999999999999999999999999999999999999999999998764
No 38
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.59 E-value=2.6e-07 Score=68.43 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=64.8
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|...++++.|++++..+|+|+|+.|..+.|..++|+.+|++|.+..+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 5677776665 6899999999999999999999999999999999999999999999999999999988754
No 39
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.58 E-value=4e-07 Score=66.03 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
...+.|.|...+|. +.|.|..+++...|....+++.|++++..||+|.|+.|..+.|-.++++ +|++|.++.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 45688899887775 6899999999999999999999999999999999999999999999999 89999988764
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.57 E-value=1.9e-07 Score=68.85 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=68.6
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
....|.|.|...+..+.+.|..+++...|...++++.|++++..||+|.|+.|..+.|..++++.+|++|.++.+.
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 3467888888874457899999999999999999999999999999999999999999999999999999988764
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-07 Score=68.15 Aligned_cols=74 Identities=7% Similarity=0.182 Sum_probs=67.1
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..+.|.|...+|. +.+.|.++++...|....+++.|++++..||+|+|..|..+.|..++++.+|++|.+....
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 3578888887665 6899999999999999999999999999999999999999999999999999999998764
No 42
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.54 E-value=3.4e-07 Score=66.94 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=64.4
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.|.|...+|. +.+.|.++++...|....+++.|++++..|++|+|..|..+.|..++++.+|++|.+..+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC--
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45667676765 6899999999999999999999999999999999999999999999999999999998764
No 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.52 E-value=6.9e-07 Score=64.50 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=68.7
Q ss_pred CCCcEEEEEEeCCc-e-EEE-EEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGG-L-KQF-RVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg-~-v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+...+.|.|...+| . +.+ .|.++++...|....+++.|++++..||+|+|..|..+.|-.++++.+|++|.++++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 45678888888766 4 688 5999999999999999999999999999999999999999999999999999998764
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.51 E-value=8.9e-07 Score=66.68 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=67.7
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
...+.|.|...+..+.+.|.++++...|....++..|++++..||+|.|+.|..+.|-.++|+.+|++|.+..+.
T Consensus 23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 456888888774457899999999999999999999999999999999999999999999999999999998764
No 45
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.51 E-value=9.8e-07 Score=69.32 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+...|+|.|...+..+.+.|..+++...|...++++.|++++..||+|+|+.|..+.|-.++++.+|++|.++.+.
T Consensus 29 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred CCCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 3467888888874347899999999999999999999999999999999999999999999999999999998764
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.51 E-value=7.1e-07 Score=67.23 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
....+.|.|...++...+.|.++++...|....+++.|++++..||+|.|+.|..+.|-.++++.+|++|.+..+.
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 4567899998888777899999999999999999999999999999999999999999999999999999998764
No 47
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.50 E-value=5.9e-07 Score=65.63 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=64.7
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....+++.|++++..|++|+|..|..+.|-.++++++|++|.+.++.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 4667766665 7899999999999999999999999999999999999999999999999999999998764
No 48
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.48 E-value=1.2e-06 Score=62.35 Aligned_cols=74 Identities=8% Similarity=0.190 Sum_probs=66.2
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhh---cCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADK---VNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~---~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..+.|.|...+|. +.+.|..+++...|....+++ .|++++..|++|.|+.|..+.|-.++++.+|++|.++.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 3577888887665 689999999999999999997 7899999999999999999999999999999999998764
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.44 E-value=5.1e-07 Score=66.85 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=64.9
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
...+.|.|.. +..+.+.|.++++...|....+++.|++++..||+|+|+.|..+.|..++++.+|++|.+.++.
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 3456777776 4457899999999999999999999999999999999999999999999999999999998764
No 50
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.44 E-value=1.3e-06 Score=67.83 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=66.5
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.+.|.|...+|. +.+.+.++++...|...++++.|++++..+|+|+|+.+..+.|..++++.+|++|.+..++
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 366777776664 7899999999999999999999999999999999999999999999999999999998875
No 51
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.42 E-value=1.5e-06 Score=62.67 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...|.|.|...+|. +.+.|.++++...|....+++.|++++..|++|.|+.+..+.|-.++|+ +|++|.+..
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 45688889887765 6899999999999999999999999999999999999999999999999 899998875
No 52
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=7.1e-07 Score=67.78 Aligned_cols=72 Identities=7% Similarity=0.163 Sum_probs=64.7
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.|.|...+|. +.+.|..+++...|....+++.|+++...||+|.|+.|..+.|-.++|+.+|++|.+++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 45677775665 6899999999999999999999999999999999999999999999999999999998764
No 53
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=2e-06 Score=63.60 Aligned_cols=71 Identities=7% Similarity=0.177 Sum_probs=63.6
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhh---cCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADK---VNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~---~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|..+++...|....++. .|++++..|++|.|+.|..+.|-.++|+.+|++|.++..+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 5667776664 789999999999999999998 7899999999999999999999999999999999988754
No 54
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.37 E-value=2e-06 Score=63.23 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~~kQ 216 (217)
+...|.|.|...+|. +.+.|.++++...|...++.+. +...||+|.|+.|..+ .|..++++.+|++|.++..+
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 346688999887775 6899999999999999999887 8999999999999998 99999999999999998764
No 55
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.34 E-value=2.5e-06 Score=65.07 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+-|.|.|....|. +.+.|.++++...|.+.-+++.|++++..|+.|.|+.+..+.|-.+.++.+|++|+.+.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 456799999988876 79999999999999999999999999999999999999999999999999999999873
No 56
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.3e-07 Score=68.61 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
++..|+|+|...+..+.+.|..+++...|....+++.|++++..|++|.|+.|..+.|-.++|+++|++|.+..+.
T Consensus 25 ~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 25 GAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ----CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 4456778888733346889999999999999999999999999999999999999999999999999999988753
No 57
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.28 E-value=5.4e-06 Score=66.90 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
....+.|.|...+|. +.+.|.++++...|....+.+.|++++..|++|.|..+..+.|..++++.+|++|.+...
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 566789999888876 689999999999999999999999999999999999999999999999999999998865
No 58
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.25 E-value=5.8e-06 Score=61.52 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=68.8
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~~kQ 216 (217)
....|.|.|...++.+.+.|.++++...|....+++.|++++..|++|.|+.|..+ .|-.++++.+|++|.+..+.
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 34568888888777778999999999999999999999999999999999999988 89999999999999998764
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.55 E-value=1.4e-07 Score=66.01 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=62.7
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.|.|...+|. +.+.|.++++...|....++..|++++..+|+|+|..+..+.|-.++|+.+|++|.+++.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 3555565665 678999999999999999999999999999999999999999999999999999998765
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.22 E-value=8e-06 Score=64.73 Aligned_cols=75 Identities=7% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+..+.|.|...+|. +.+.|.++++...|....+.+.|++++..+++|+|..+..+.|-.++++.+|++|.+.++.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 34577777777765 6899999999999999999999999999999999999999999999999999999998764
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.21 E-value=6.3e-06 Score=63.91 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=64.2
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....+++.|++++..+|+|.|..+..+.|..++|+.+|++|.+..++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 4667666664 6899999999999999999999999999999999999999999999999999999987653
No 62
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.21 E-value=7.6e-06 Score=62.11 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCCcEEEEEEeCCce-EEE--EEcCCChHHHHHHHH-HhhcCCCCcceEEEECCcccCCCCCccccCC-CCCcEEEEEec
Q 027888 141 ERAKIVVSIQDKGGL-KQF--RVYADDKFERLFKMY-ADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTK 215 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~F--rIk~tT~L~KLf~aY-ae~~gl~~~slrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~~k 215 (217)
....|.|.|...+|. +.+ .+.++++...|.... ++..|+++...|++|.|+.|..+.|-.++++ .+|++|.++++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 455688888876664 444 666999999999998 7888999999999999999999999999999 99999999987
Q ss_pred c
Q 027888 216 K 216 (217)
Q Consensus 216 Q 216 (217)
+
T Consensus 96 k 96 (98)
T 4a20_A 96 P 96 (98)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.5e-06 Score=66.28 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCcEEEEEE-eCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 141 ERAKIVVSIQ-DKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 141 ~~~kItIkV~-~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+...|+|+|. ..++. +.+.+..++.+..|.+.++...+++.+.+|+.|.|+-|..++|-.++|+++|.+|.+.+.+
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 4456888886 55554 7899999999999999999999999999999999999999999999999999999887654
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=7.9e-06 Score=62.89 Aligned_cols=73 Identities=10% Similarity=0.190 Sum_probs=65.4
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
-..|.|..-+|. +.+.|.++++...|....+++.|++++..|++|.|..|..+.|-.++++.+|++|.+..+.
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 345666666665 6899999999999999999999999999999999999999999999999999999998764
No 65
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.19 E-value=6.3e-06 Score=60.16 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=67.3
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcc-cCCCCCccccCCCCCcEEEEEec
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK-IGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~r-I~~~~TP~sLgMEDGDiIDV~~k 215 (217)
..+.+|.|..-.|. +.+.|.++++...|....+++.|++++..|++|.|+. +..+.|-.++++.+|++|.+.++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 35678888877775 6899999999999999999999999999999999999 99999999999999999998764
No 66
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.18 E-value=1.5e-05 Score=57.99 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=62.8
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
+.+.+.-.+..+.+.|.++++...|....++..|++++..|++|+|+.|..+.|-.++|+.+|++|.+..++
T Consensus 13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 444444444457889999999999999999999999999999999999999999999999999999998764
No 67
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.13 E-value=1.1e-05 Score=66.20 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=65.1
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....+++.|++++..|++|.|+.|..+.|-.++++++|++|.+.++.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEe
Confidence 4667777775 6899999999999999999999999999999999999999999999999999999998764
No 68
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.13 E-value=1.3e-05 Score=60.80 Aligned_cols=74 Identities=8% Similarity=0.171 Sum_probs=67.1
Q ss_pred CcEEEEEEeC---Cce-EEEEEcC-CChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDK---GGL-KQFRVYA-DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~q---dg~-v~FrIk~-tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
..|+|.|... +|. +.+.|.+ +++...|....+...|++++..+++|.|..+..+.|-.++++.+|++|.+.++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 3588888876 554 7899998 999999999999999999999999999999999999999999999999998753
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.12 E-value=1.3e-05 Score=61.35 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=65.9
Q ss_pred CcEEEEEEeCC----------ce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888 143 AKIVVSIQDKG----------GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIE 211 (217)
Q Consensus 143 ~kItIkV~~qd----------g~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID 211 (217)
..|+|.|...+ |. +.+.|.++++...|....+...|++++..|++|.|..+..+.|-.++++.+|++|.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 35777777653 44 67999999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q 027888 212 VHTKK 216 (217)
Q Consensus 212 V~~kQ 216 (217)
+.++.
T Consensus 104 lv~rl 108 (115)
T 1we7_A 104 LALKE 108 (115)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 98753
No 70
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.10 E-value=1.2e-05 Score=61.72 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+..-|.|.|....|. +.+.|.++++...|....+++.|++++..|++|.|+.|..+.|-.+.++.+|.+|++..
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 445699999987665 78999999999999999999999999999999999999999999999999999998764
No 71
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=1.7e-05 Score=57.91 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=65.0
Q ss_pred CCcEEEEEEeCCceEEEEEcCC-----ChHHHHHHHHHhhcCCCCcceEEEECCcccCC-CCCccccCCCCCcEEEEEec
Q 027888 142 RAKIVVSIQDKGGLKQFRVYAD-----DKFERLFKMYADKVNLDQENLVFCFDGDKIGP-EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~t-----T~L~KLf~aYae~~gl~~~slrF~FDG~rI~~-~~TP~sLgMEDGDiIDV~~k 215 (217)
...|+|.|...++...+.|..+ .++..|....+++.|+++...|++|.|..|.. +.|-.++++.+|++|.++..
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 4568899887655577899985 99999999999999999999999999999987 45899999999999998764
No 72
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.05 E-value=1.9e-05 Score=59.06 Aligned_cols=74 Identities=5% Similarity=0.003 Sum_probs=65.4
Q ss_pred CCCcEEEEEEeCCceE-EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 141 ERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v-~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
....|+|+|...+..+ .+.|..++++..|....++..|++++..|++|.|..+..+ |-.++++.+|++|.++..
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 4466888888655456 5999999999999999999999999999999999999888 999999999999987654
No 73
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.03 E-value=1.6e-05 Score=60.26 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=61.8
Q ss_pred cEEEEEEeCCc----eEEEE--------EcCC-ChHHHHHHHHHhhc--CCCCcc-eEEEECCcccCCCCCccccCCCCC
Q 027888 144 KIVVSIQDKGG----LKQFR--------VYAD-DKFERLFKMYADKV--NLDQEN-LVFCFDGDKIGPEATPASLEMEDN 207 (217)
Q Consensus 144 kItIkV~~qdg----~v~Fr--------Ik~t-T~L~KLf~aYae~~--gl~~~s-lrF~FDG~rI~~~~TP~sLgMEDG 207 (217)
.|.|.|...++ ...+. |.++ ++...|....+.+. |+++.. .||+|.|+.|..+.|-.++++.+|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g 91 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPG 91 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCC
Confidence 45666666565 35677 4444 99999999999999 999999 999999999999999999999999
Q ss_pred cEEEEEecc
Q 027888 208 DIIEVHTKK 216 (217)
Q Consensus 208 DiIDV~~kQ 216 (217)
++|.++.+.
T Consensus 92 ~~i~lv~~~ 100 (107)
T 1x1m_A 92 STVHVLRKS 100 (107)
T ss_dssp CEEEEEESS
T ss_pred CEEEEEeCC
Confidence 999998754
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.01 E-value=1.3e-05 Score=59.59 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=65.3
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
....|+|+|...+..+.+.|..++++..|....+++.|+++...|++|.|..+ .+.|-.++++.+|++|.++..
T Consensus 14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 55678888886554578999999999999999999999999999999999999 556999999999999988764
No 75
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.98 E-value=2.6e-05 Score=57.08 Aligned_cols=75 Identities=7% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCcEEEEEEeCCce---EEEEEcCCChHHHHHHHHHhhc--CCCCcceEEEECCcccCCCCCcccc--CCCCCcEEEEEe
Q 027888 142 RAKIVVSIQDKGGL---KQFRVYADDKFERLFKMYADKV--NLDQENLVFCFDGDKIGPEATPASL--EMEDNDIIEVHT 214 (217)
Q Consensus 142 ~~kItIkV~~qdg~---v~FrIk~tT~L~KLf~aYae~~--gl~~~slrF~FDG~rI~~~~TP~sL--gMEDGDiIDV~~ 214 (217)
...|+|.|...++. +.+.+..+++...|....++.. |++++..|++|.|+.|..+.|-.++ ++.+|.+|.+..
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 34577788776664 4566669999999999999998 9999999999999999999999999 999999999876
Q ss_pred cc
Q 027888 215 KK 216 (217)
Q Consensus 215 kQ 216 (217)
+.
T Consensus 85 ~~ 86 (93)
T 1wgd_A 85 NV 86 (93)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=97.98 E-value=2.1e-05 Score=66.27 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=67.7
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.+.|.|...+|. +.+.|.++++...|....+++.|++++..+|+|.|..|..+.|..++++++|++|.+.++.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence 488889887775 7899999999999999999999999999999999999999999999999999999998753
No 77
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=97.97 E-value=9.6e-07 Score=69.01 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....++..|++++..+++|.|..|.++.|..++|+.+|++|.++++.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 4556666665 6899999999999999999999999999999999999999999999999999999988753
No 78
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.95 E-value=3.1e-05 Score=58.04 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=62.9
Q ss_pred CcEEEEEEeCC-----ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEEecc
Q 027888 143 AKIVVSIQDKG-----GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 143 ~kItIkV~~qd-----g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~~kQ 216 (217)
..+.|.|.... ..+.+.|..+++...|....+++.|++++..|++|.|+.|..+ .|-.++++.+|++|.++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 44666665532 2357999999999999999999999999999999999999877 69999999999999988754
No 79
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.90 E-value=2.9e-05 Score=56.93 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=63.5
Q ss_pred CcEEEEEEeCCceEEE-EEcCCChHHHHHHHHHhhcCCCCcceEEE---ECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 143 AKIVVSIQDKGGLKQF-RVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 143 ~kItIkV~~qdg~v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
..|+|+|...+..+.+ .|..++++..|....+++.|++++..|++ |.|..+.++.|-.++++.+|++|.++..
T Consensus 6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 4466666654444678 88999999999999999999999999999 9999999899999999999999988754
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.83 E-value=4.8e-05 Score=57.74 Aligned_cols=75 Identities=12% Similarity=0.262 Sum_probs=65.7
Q ss_pred CCCcEEEEEEeCCceEEEEEc-CCChHHHHHHHHHhhcCCCCcceEEEECCc-----------c----cCCCCCccccCC
Q 027888 141 ERAKIVVSIQDKGGLKQFRVY-ADDKFERLFKMYADKVNLDQENLVFCFDGD-----------K----IGPEATPASLEM 204 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk-~tT~L~KLf~aYae~~gl~~~slrF~FDG~-----------r----I~~~~TP~sLgM 204 (217)
+...+.|+|++.+|...+.|. ++.++..|....+++.|+++...++.|.|. . +..+.|-.++|+
T Consensus 4 ~~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp SCCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CCCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 345588999999997678899 999999999999999999999999999988 4 367889999999
Q ss_pred CCCcEEEEEec
Q 027888 205 EDNDIIEVHTK 215 (217)
Q Consensus 205 EDGDiIDV~~k 215 (217)
.+|++|.+...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999987643
No 81
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.80 E-value=8.4e-05 Score=57.05 Aligned_cols=73 Identities=8% Similarity=-0.014 Sum_probs=63.0
Q ss_pred CCcEEEEEEeCC----ce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 142 RAKIVVSIQDKG----GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 142 ~~kItIkV~~qd----g~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..-.+|+|...+ +. +.+.|.++.+...|...-+++.|+++...|++|.|+.|.++.|-.+.++.+|.+|-|+.
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 334455555544 33 78999999999999999999999999999999999999999999999999999996654
No 82
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.79 E-value=8.7e-05 Score=59.77 Aligned_cols=72 Identities=13% Similarity=0.234 Sum_probs=63.7
Q ss_pred cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.+.|.|...+|. +.+.|.++.+...|....+.+.|++++..|++|+|+.+..+.|-.++++.+|++|.+.++
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 355556666665 689999999999999999999999999999999999999999999999999999998765
No 83
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=97.77 E-value=3.5e-06 Score=68.67 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
.|.|...+|. +.+.|.++++...|....+++.|++++..+|+|.|..|..+.|..++++.+|++|.+.++.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeec
Confidence 4555565664 6899999999999999999999999999999999999999999999999999999988753
No 84
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.71 E-value=0.00018 Score=56.83 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=64.5
Q ss_pred EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEE-E-CCcccCCCCCccccCCCCCcEEEEEec
Q 027888 145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFC-F-DGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~-F-DG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
+.|.|...+|. +.+.|.++++...|....+...|+++...|++ | .|..+..+.|-.++++.+|++|.+..+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 45667766665 68999999999999999999999999999999 9 799999999999999999999998876
No 85
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=5.9e-05 Score=55.95 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=62.8
Q ss_pred EEEEEEeCCce-EEEEEc--CCChHHHHHHHH-HhhcCCCCcceEEEECCcccCCCCCccccCC-CCCcEEEEEecc
Q 027888 145 IVVSIQDKGGL-KQFRVY--ADDKFERLFKMY-ADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTKK 216 (217)
Q Consensus 145 ItIkV~~qdg~-v~FrIk--~tT~L~KLf~aY-ae~~gl~~~slrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~~kQ 216 (217)
+.|.|....|. +.+.|. ++++...|.... +++.|+++...|++|.|+.|..+.|-.++++ .+|.+|.|....
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 45677776665 666655 999999999998 9999999999999999999999999999999 799999998754
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.69 E-value=7.8e-05 Score=54.11 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=59.3
Q ss_pred EEEEEeCCceEEEE-EcCCChHHHHHHHHHhhcCCCCcceEEEEC--CcccC---CCCCccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGLKQFR-VYADDKFERLFKMYADKVNLDQENLVFCFD--GDKIG---PEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~v~Fr-Ik~tT~L~KLf~aYae~~gl~~~slrF~FD--G~rI~---~~~TP~sLgMEDGDiIDV~~k 215 (217)
.|+|+..+|...+. +..++++..|....+++.|++++..+|+|. |+.+. .+.|-.++|+.+|++|.|...
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 57888888875577 899999999999999999999888888875 47774 578999999999999887654
No 87
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.68 E-value=5.7e-05 Score=58.23 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC---------------cceEEEECCcccC-CCCCcccc
Q 027888 140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ---------------ENLVFCFDGDKIG-PEATPASL 202 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~---------------~slrF~FDG~rI~-~~~TP~sL 202 (217)
+++..++|.|..-+|. +.+.|.++.+...|..+.+++.|+++ ..+++.|.|+.|. .+.|-.++
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 3556789999877775 78999999999999999999998865 4689999999996 56899999
Q ss_pred CCCCCcEEEEEec
Q 027888 203 EMEDNDIIEVHTK 215 (217)
Q Consensus 203 gMEDGDiIDV~~k 215 (217)
|+.+|++|.+...
T Consensus 83 gI~~g~~l~lv~~ 95 (105)
T 1v2y_A 83 GIRNRDEVSFIKK 95 (105)
T ss_dssp TCCSSEEEEEEEC
T ss_pred CCCCCCEEEEEeh
Confidence 9999999988764
No 88
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.67 E-value=0.0003 Score=54.44 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=62.6
Q ss_pred CCcEEEEEEeCC---ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCC-CCCcEEEEEec
Q 027888 142 RAKIVVSIQDKG---GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTK 215 (217)
Q Consensus 142 ~~kItIkV~~qd---g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~~k 215 (217)
.-.+.|.|.+.. +.+.+.|.++++...|....+++.|+++..-|++|.|+.+.++.|-.+.|+ ++|++|..++-
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 334555555544 347999999999999999999999999999999999998888999999999 69999988763
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.67 E-value=0.00022 Score=52.67 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=63.7
Q ss_pred CCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC---cc----cCCCCCccccCCCCCcEEEE
Q 027888 142 RAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG---DK----IGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 142 ~~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG---~r----I~~~~TP~sLgMEDGDiIDV 212 (217)
...|+|.|.+.+. ...+++.++++...|....+.+.|++++..|++|.| .. +.++.|-.++++.+|++|.|
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 3459999998776 478999999999999999999999999999999976 43 46788999999999999988
Q ss_pred Ee
Q 027888 213 HT 214 (217)
Q Consensus 213 ~~ 214 (217)
.-
T Consensus 85 ~d 86 (95)
T 1v6e_A 85 ID 86 (95)
T ss_dssp BC
T ss_pred EE
Confidence 64
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.63 E-value=0.00034 Score=54.23 Aligned_cols=74 Identities=11% Similarity=-0.017 Sum_probs=64.4
Q ss_pred CCCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC---cc----cCCCCCccccCCCCCcEEE
Q 027888 141 ERAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG---DK----IGPEATPASLEMEDNDIIE 211 (217)
Q Consensus 141 ~~~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG---~r----I~~~~TP~sLgMEDGDiID 211 (217)
....|+|.|.+.++ .+.++|.++.+...|....+.+.|++++..|+.|.| .. ...+.|-.++|+++|.+|.
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 34579999998776 478999999999999999999999999999999977 43 3678899999999999998
Q ss_pred EEe
Q 027888 212 VHT 214 (217)
Q Consensus 212 V~~ 214 (217)
|..
T Consensus 83 vvd 85 (122)
T 1t0y_A 83 AVD 85 (122)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 91
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=97.56 E-value=0.00037 Score=52.33 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=63.6
Q ss_pred CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC--Cc---cc-CCCCCccccCCCCCcEEE
Q 027888 141 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD--GD---KI-GPEATPASLEMEDNDIIE 211 (217)
Q Consensus 141 ~~~kItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD--G~---rI-~~~~TP~sLgMEDGDiID 211 (217)
+...|+|.|.+..+ .+.++|.++.+...|...-..+.|+++...|++|. |. .+ .++.|-.++++.+|++|.
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 46789999987665 36899999999999999999999999999999997 44 34 778899999999999998
Q ss_pred EE
Q 027888 212 VH 213 (217)
Q Consensus 212 V~ 213 (217)
+.
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 92
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.45 E-value=0.0005 Score=51.92 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=64.3
Q ss_pred CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc---c----cCCCCCccccCCCCCcEE
Q 027888 141 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD---K----IGPEATPASLEMEDNDII 210 (217)
Q Consensus 141 ~~~kItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~---r----I~~~~TP~sLgMEDGDiI 210 (217)
+...|+|.|.+... .+.++|.++.+...|...-..+.|+++...|++|.|. . ..++.|-.++++++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 56789999987654 3789999999999999999999999999999999884 3 366779999999999999
Q ss_pred EEEe
Q 027888 211 EVHT 214 (217)
Q Consensus 211 DV~~ 214 (217)
.+.-
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 93
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=97.44 E-value=0.0005 Score=54.25 Aligned_cols=71 Identities=7% Similarity=0.013 Sum_probs=63.7
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCC-------CCcEEEEEec
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEME-------DNDIIEVHTK 215 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgME-------DGDiIDV~~k 215 (217)
|.|+++.....+.+.|..+++...|....+.+.|+++...|++|+|+.|..+.|-.++|+. .+.+|.+..+
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 6778876655578899999999999999999999999999999999999999999999999 6888887654
No 94
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.42 E-value=0.0012 Score=51.64 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhh------cCC--CCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADK------VNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIE 211 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~------~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID 211 (217)
....|.|+|..-.|. +.|.|.++++...|....+.. -|+ ++...||+|.|+.|..+.|-.++++..|+.+-
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 345688888876665 789999999999999999984 454 58999999999999999999999999887654
Q ss_pred EE
Q 027888 212 VH 213 (217)
Q Consensus 212 V~ 213 (217)
+|
T Consensus 93 lh 94 (116)
T 1wgh_A 93 MH 94 (116)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 95
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.42 E-value=0.00057 Score=61.56 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
...+.|.|...+|. +.+.|..+++...|....+++.|++++..|++|.|+.|..+.|-.++++.+|++|.+.++.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 45678888876664 6899999999999999999999999999999999999999999999999999999998753
No 96
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.37 E-value=0.0007 Score=53.53 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHh------hcCC--CCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYAD------KVNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIE 211 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae------~~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID 211 (217)
....|.|+|..-.|. +.|.|.++++...|....++ +-|+ ++..+|++|.|+.|..+.|-.++++..|+.+-
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 355688999876665 78999999999999999998 5566 47999999999999999999999999999654
Q ss_pred EE
Q 027888 212 VH 213 (217)
Q Consensus 212 V~ 213 (217)
++
T Consensus 94 lh 95 (125)
T 2gow_A 94 MH 95 (125)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 97
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=97.37 E-value=0.0011 Score=52.39 Aligned_cols=71 Identities=6% Similarity=0.012 Sum_probs=64.4
Q ss_pred EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCC-------CcEEEEEec
Q 027888 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED-------NDIIEVHTK 215 (217)
Q Consensus 145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMED-------GDiIDV~~k 215 (217)
+-|+|+.....+.+.+.++++...|......+.|+++..-|++|+|+.+..+.|-.+.|+.+ +.+|....+
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56777777667889999999999999999999999999999999999999999999999999 999876643
No 98
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.33 E-value=0.00039 Score=63.85 Aligned_cols=74 Identities=7% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHh---hcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYAD---KVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae---~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
...+.|.|+...|. +.+.|..+++...|....+. +.|++....||+|.|+.|..+.|-.++++.+|++|.+++.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 44566677776665 68999999999999999998 5679999999999999999999999999999999955543
No 99
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=97.30 E-value=0.00058 Score=51.66 Aligned_cols=72 Identities=4% Similarity=0.150 Sum_probs=60.2
Q ss_pred CCCcEEEEEEeCCce---EEEEEcCCChHHHHHHHHHhhc-CCC-CcceEEEECCcccCCCCCcccc--CCCCCcEEEE
Q 027888 141 ERAKIVVSIQDKGGL---KQFRVYADDKFERLFKMYADKV-NLD-QENLVFCFDGDKIGPEATPASL--EMEDNDIIEV 212 (217)
Q Consensus 141 ~~~kItIkV~~qdg~---v~FrIk~tT~L~KLf~aYae~~-gl~-~~slrF~FDG~rI~~~~TP~sL--gMEDGDiIDV 212 (217)
....|.|.|+..++. +.+.+.++++...|...-+++. |.+ +...|++|.|+.|..+.|-.++ ++.+|.+|.+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 345688888876653 6788899999999999999865 555 5999999999999999999999 9999999875
No 100
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.24 E-value=0.002 Score=47.51 Aligned_cols=75 Identities=7% Similarity=0.115 Sum_probs=62.0
Q ss_pred CCCcEEEEEEeC---Cce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc-----c--c-CCCCCccccCCCCCc
Q 027888 141 ERAKIVVSIQDK---GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD-----K--I-GPEATPASLEMEDND 208 (217)
Q Consensus 141 ~~~kItIkV~~q---dg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~-----r--I-~~~~TP~sLgMEDGD 208 (217)
....|+|.|.+. ++. +..++..+.+...|...-+..+|+++...++.|.+. . + ....|-.++++++|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 456788888764 344 688999999999999999999999999999998632 2 3 456788999999999
Q ss_pred EEEEEec
Q 027888 209 IIEVHTK 215 (217)
Q Consensus 209 iIDV~~k 215 (217)
+|.|...
T Consensus 86 ~I~V~d~ 92 (97)
T 1wjn_A 86 CLLVRWS 92 (97)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9988764
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.20 E-value=0.00031 Score=51.14 Aligned_cols=70 Identities=14% Similarity=0.329 Sum_probs=56.1
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcc---c--CCCCCccccCCCCCcEEEEE
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK---I--GPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~r---I--~~~~TP~sLgMEDGDiIDV~ 213 (217)
.+.|+|++.+|...+.+.+++++..|++.-++..+++.....+++.-.+ | ..+.|-.+||+..||+|-+.
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 4779999999987788999999999999999999998655444443332 3 37889999999999998764
No 102
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=96.98 E-value=0.0041 Score=45.63 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=61.4
Q ss_pred cEEEEEEeCC-c-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-------CCcccCCCCCccccCCCCCcEEEEE
Q 027888 144 KIVVSIQDKG-G-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-------DGDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 144 kItIkV~~qd-g-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-------DG~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
.|+|.|.... + . ...|+.++.+...|...-..+.|+++...|+.| -|..+..+.|-.++++++|.+|.+.
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 3667776543 2 3 478999999999999999999999999999996 4788899999999999999999886
Q ss_pred ec
Q 027888 214 TK 215 (217)
Q Consensus 214 ~k 215 (217)
-.
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 103
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.87 E-value=0.005 Score=48.98 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHh-----hcCCCC--cceEEEECCcccCCCCCccccCCCCCcE
Q 027888 142 RAKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYAD-----KVNLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDI 209 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae-----~~gl~~--~slrF~FDG~rI~~~~TP~sLgMEDGDi 209 (217)
.+.+.|+|+.-+|. + .+.+.++++...|...-+. +-|+++ +..||+|.|+.|..+.|-.++++..|+.
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence 36788999888874 6 6999999999999998854 446665 8999999999999999999999999964
No 104
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=0.0033 Score=46.19 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=59.8
Q ss_pred CCcEEEEEEeCCce-E--EE-EEcCCChHHHHHHHHHhh-cCCCCcceEEEEC--CcccCCCCCccccCCCCCcEEEE
Q 027888 142 RAKIVVSIQDKGGL-K--QF-RVYADDKFERLFKMYADK-VNLDQENLVFCFD--GDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v--~F-rIk~tT~L~KLf~aYae~-~gl~~~slrF~FD--G~rI~~~~TP~sLgMEDGDiIDV 212 (217)
...+.|.|....|. . .+ .|.++++...|....++. .|++++..|+.|. |..|..+.|-.++++.+|.+|.+
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 34577888876653 2 47 899999999999999994 7999988888876 99999999999999999998755
No 105
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=96.73 E-value=0.0043 Score=55.70 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEE---ECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.+.|+|+|...+..+.+.|..+++...|...-++..|+++..-+++ |.|..+..+.|-.++++.+|.+|.++..
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 4568888887665678999999999999999999999999999999 8999999999999999999999987643
No 106
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.08 E-value=0.014 Score=44.18 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=63.3
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.|.|...++. ..++|.+++.|..+.+.-|+++|++...+.+.|+++.|..+..---.||-+|-.++....
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 6778888885 799999999999999999999999999999999999999988888889999988887653
No 107
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.02 Score=43.46 Aligned_cols=71 Identities=7% Similarity=0.091 Sum_probs=59.1
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCccccCCCCCcEEEEEe
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
-+.+++.-.++.+.+.|..+++...|...-+++.|+++..-+++| .|.++.++.|-.++++..|.+|.+..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEe
Confidence 466666666666789999999999999999999999998888876 44448888899999999999987653
No 108
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.78 E-value=0.023 Score=41.99 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCcEEEEEEe---CCceEEEEEcCCChHHHHHHHHHhhcCCCCc-----ceEEEECCcccCCCCCccccCCCCCcEEEE
Q 027888 142 RAKIVVSIQD---KGGLKQFRVYADDKFERLFKMYADKVNLDQE-----NLVFCFDGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 142 ~~kItIkV~~---qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~-----slrF~FDG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
+.+|+|++.. .++.+-+||...-++++|...-.+.++++.. .+|..-.|.-+.++++-.+.++.|||+|++
T Consensus 2 ~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 2 GSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred CcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4688888875 4445789999999999999999999998652 344444688888999999999999999987
No 109
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=94.77 E-value=0.0051 Score=51.98 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 147 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 147 IkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
|.|..-+|. +.+.|.++++...|....+...|+++...||+|.|..|..+.|-. +|.+|.+.+.
T Consensus 3 I~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 445544554 689999999999999999999999999999999999998877755 8888887654
No 110
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.46 E-value=0.32 Score=33.89 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=50.8
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.++|+|.++.+...+.+...+++..|.+.. +++...+.+..||.-+..+. -+.+||.|+++.
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 367888888877777888888888888754 67788899999999997665 799999999874
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=91.87 E-value=1.5 Score=31.29 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=56.7
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCccc---CCCCCccccCCCCCcEEEEEe
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKI---GPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI---~~~~TP~sLgMEDGDiIDV~~ 214 (217)
....+|.|+-.+|. +.-+...+++++.|+..-.. .+.+...++|.- =.+.+ ..+.|-.++||-.+.++-|-.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45678888888986 77788899999999885544 677778888884 35667 357899999999999887754
No 112
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.47 E-value=1.5 Score=37.16 Aligned_cols=72 Identities=7% Similarity=0.076 Sum_probs=56.8
Q ss_pred cEEEEEEeCCc--e-EEEEEcCCChHHHHHHHHHhhcCCCCc-ceEEEE-C----CcccC-CCCCccccCCCCCcEEEEE
Q 027888 144 KIVVSIQDKGG--L-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCF-D----GDKIG-PEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 144 kItIkV~~qdg--~-v~FrIk~tT~L~KLf~aYae~~gl~~~-slrF~F-D----G~rI~-~~~TP~sLgMEDGDiIDV~ 213 (217)
.+.|++..... . +.+.+.+..++..|++.-|+.++++.+ .+|++. . ...|. .+.|..++++.+|..|-+=
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 45666655443 2 468889999999999999999999986 799998 2 34565 4689999999999998765
Q ss_pred ec
Q 027888 214 TK 215 (217)
Q Consensus 214 ~k 215 (217)
++
T Consensus 219 ~r 220 (231)
T 3jyu_A 219 PQ 220 (231)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 113
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.39 E-value=0.88 Score=34.35 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC--CCCCccccCCCCCcEE
Q 027888 136 SKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG--PEATPASLEMEDNDII 210 (217)
Q Consensus 136 ~~p~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~--~~~TP~sLgMEDGDiI 210 (217)
+++.+....++|.|+-.+|. +.-+...+++++.|+.... ..+.....++|.- =.+.+. .+.|-+++||-...++
T Consensus 15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL 93 (109)
T ss_dssp CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence 33343457899999999986 6778889999999987544 4465667777764 355564 4789999999999888
Q ss_pred EEE
Q 027888 211 EVH 213 (217)
Q Consensus 211 DV~ 213 (217)
-|-
T Consensus 94 ~Ve 96 (109)
T 2cr5_A 94 NVE 96 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 114
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.27 E-value=1 Score=31.33 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=40.0
Q ss_pred EEEcCCChHHHHHHHHHhhcCCCC--cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 158 FRVYADDKFERLFKMYADKVNLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 158 FrIk~tT~L~KLf~aYae~~gl~~--~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.+ ..+++..|++..+.+.++.. ..+.+..||+.|...+|+ +.+||.|.++.
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~----l~~gDeV~i~P 69 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP----LKDGDVISLLP 69 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC----CCTTCEEEEEC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC----CCCCCEEEEEC
Confidence 344 56789999998887655432 789999999998755554 99999999874
No 115
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=89.61 E-value=1.2 Score=33.69 Aligned_cols=51 Identities=6% Similarity=0.181 Sum_probs=44.2
Q ss_pred cEEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC
Q 027888 144 KIVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG 194 (217)
Q Consensus 144 kItIkV~~qdg-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~ 194 (217)
...|.|-+-.. . ++|-|.++.++..+.+.-+++.|+++.+-+++|.|+.+.
T Consensus 12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 45677777554 3 689999999999999999999999999999999997765
No 116
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.55 E-value=1.4 Score=33.24 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC---CcccCCCCCccccCCCC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD---GDKIGPEATPASLEMED 206 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD---G~rI~~~~TP~sLgMED 206 (217)
+-..+.+.|.....+ ...||.+..+|+.|+-+-|++..+++.++.|+-+ ++.|.-+.+-.+|||..
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 446677777777766 4789999999999999999999999999999875 66777888888888875
No 117
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=87.60 E-value=1 Score=35.36 Aligned_cols=44 Identities=9% Similarity=0.233 Sum_probs=36.6
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCc
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATP 199 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP 199 (217)
..|||.++++|..|+...|+.+|++++.+|||+--.|=+.+.=|
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp 101 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 101 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCC
Confidence 47999999999999999999999999999999965543433333
No 118
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=87.40 E-value=2.5 Score=35.38 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=56.0
Q ss_pred cEEEEEEeCCc--e-EEEEEcCCChHHHHHHHHHhhcCCCCc-ceEEEE-C----CcccCC-CCCccccCCCCCcEEEEE
Q 027888 144 KIVVSIQDKGG--L-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCF-D----GDKIGP-EATPASLEMEDNDIIEVH 213 (217)
Q Consensus 144 kItIkV~~qdg--~-v~FrIk~tT~L~KLf~aYae~~gl~~~-slrF~F-D----G~rI~~-~~TP~sLgMEDGDiIDV~ 213 (217)
.+.|++..... . +.+.+.+..++..|++.-|+.++++.+ .+|++. . ...|.. +.|..+++|.+|..|-+=
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 45566654443 2 578999999999999999999999986 799986 2 334444 579999999999999765
Q ss_pred ec
Q 027888 214 TK 215 (217)
Q Consensus 214 ~k 215 (217)
++
T Consensus 207 ~r 208 (217)
T 4a3p_A 207 QK 208 (217)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 119
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.11 E-value=1.9 Score=31.87 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=42.8
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc
Q 027888 143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD 191 (217)
Q Consensus 143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~ 191 (217)
..++|+|+.+ -.+-++|.+..+|..|.+.-+++.+++.+.+++.|.-.
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 3489999998 46899999999999999999999999999999999543
No 120
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=86.10 E-value=6.1 Score=29.70 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=58.1
Q ss_pred CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC---CCCCccccCCCCCcEEEEE
Q 027888 140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG---PEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~---~~~TP~sLgMEDGDiIDV~ 213 (217)
+.....+|.|+-.+|. +.-+...+++++.|++......+.....+.|.- =-+.+. .+.|-++|||-...++-|.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 3556789999998986 788899999999999987777777667777764 344454 3679999999998777665
Q ss_pred e
Q 027888 214 T 214 (217)
Q Consensus 214 ~ 214 (217)
.
T Consensus 89 ~ 89 (109)
T 2dzk_A 89 P 89 (109)
T ss_dssp C
T ss_pred E
Confidence 4
No 121
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=85.06 E-value=3.7 Score=31.57 Aligned_cols=62 Identities=11% Similarity=0.268 Sum_probs=49.0
Q ss_pred cCCCCcCCCCcEEEEEEeCCceEEEEEcC--CChHHHHHHHHHhhcCCCCcceEEEE---CCcccCCCC
Q 027888 134 KVSKPAIERAKIVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIGPEA 197 (217)
Q Consensus 134 ~~~~p~~~~~kItIkV~~qdg~v~FrIk~--tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~~~~ 197 (217)
++..|.+....++|+|..++....|.|.- ++++..|.......+|++ ++++.| +|+.|+-+.
T Consensus 4 ~~~~~~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~S 70 (101)
T 1wj6_A 4 GSSGPHSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINS 70 (101)
T ss_dssp SSCCCCSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCS
T ss_pred CCCCccccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEec
Confidence 34555557789999999998877888855 999999999999999986 667766 677766543
No 122
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=84.84 E-value=4.2 Score=30.23 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=41.3
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
+..|+||+..++..+.|+|..+..|..|.+.-+++.++.. ..|++.|
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 4568999998876679999999999999999999999976 5599988
No 123
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=83.70 E-value=4.7 Score=30.23 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=58.3
Q ss_pred CCCcEEEEEEeCC--c-e-EEEEEcCCChHHHHHHHHHhhcCCCCcce-EEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 141 ERAKIVVSIQDKG--G-L-KQFRVYADDKFERLFKMYADKVNLDQENL-VFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 141 ~~~kItIkV~~qd--g-~-v~FrIk~tT~L~KLf~aYae~~gl~~~sl-rF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...+++.++.-.. . . ..+.|-..+||..+.+.-|+.+++++.+. ...-||.-|++.+|....=|+.|-.+....
T Consensus 7 ~~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIP 85 (92)
T 1j0g_A 7 TMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIP 85 (92)
T ss_dssp CSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEE
T ss_pred CCceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecc
Confidence 3467887776322 2 2 47899999999999999999999988554 444589999999999988888887776654
No 124
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=80.46 E-value=6.9 Score=30.23 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCccc---CCCCCccccCCCCCcEEEEE
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKI---GPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI---~~~~TP~sLgMEDGDiIDV~ 213 (217)
....++|.|+-.+|. +.-+...++++..|+..-... +.....+.|+- =.+.+ ..+.|-.+|||-....+-|.
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 456799999999986 788888999999999866555 77777787774 36666 34789999999886665543
No 125
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=79.46 E-value=3.9 Score=28.95 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=44.8
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+|+|++.+.. ...+.+...++.+.|. +.+|+++..+....||+-+..+. -+ +||.|+++.
T Consensus 2 ~v~Vkl~g~~-~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~-----~l-~GD~VeIv~ 61 (74)
T 2l32_A 2 NVTVEVVGEE-TSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ-----SV-EVDRVKVLR 61 (74)
T ss_dssp EEEEECSSSS-EEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS-----SS-CCCCEEECS
T ss_pred EEEEEEeCcc-ceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH-----CC-CCCEEEEEE
Confidence 4667766432 3467888888877775 57899999999999999887766 13 499999863
No 126
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=79.19 E-value=7.6 Score=29.09 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=50.6
Q ss_pred CcEEEEEEe--CCce--EEEEEcCCChHHHHHHHHHh--hc-CCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 143 AKIVVSIQD--KGGL--KQFRVYADDKFERLFKMYAD--KV-NLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 143 ~kItIkV~~--qdg~--v~FrIk~tT~L~KLf~aYae--~~-gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..|.|.|.. .+.. +.+.+...+++..+..+..- .+ .++.+.+.+..+|+.+. .+--|.+||.|+++.
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 467777764 4433 46788899999999988753 33 67778889999999986 333499999999974
No 127
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=75.90 E-value=9.6 Score=28.47 Aligned_cols=52 Identities=10% Similarity=0.293 Sum_probs=42.6
Q ss_pred CCcEEEEEEeCCceEEEEEcC--CChHHHHHHHHHhhcCCCCcceEEEE---CCcccCC
Q 027888 142 RAKIVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIGP 195 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~--tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~~ 195 (217)
...++|+|..++....|.|.- ++++..|....+..+|++ ++++.| +|+.|+-
T Consensus 4 ~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 4 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSI 60 (87)
T ss_dssp CCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEE
T ss_pred CceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEE
Confidence 457899999988777888865 999999999999999986 778887 5665553
No 128
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=75.09 E-value=13 Score=26.02 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=41.2
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcC-CC----------CcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 155 LKQFRVYADDKFERLFKMYADKVN-LD----------QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~g-l~----------~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+..+.+...+++..|++..+.++. +. ...+++..||+.+.. +| -+.+||.|.++.
T Consensus 19 ~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~P 84 (89)
T 3po0_A 19 TVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALFP 84 (89)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEEC
Confidence 356777677899999998887763 11 134899999999975 44 499999999874
No 129
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=74.58 E-value=2.9 Score=39.61 Aligned_cols=37 Identities=8% Similarity=0.241 Sum_probs=33.5
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcc
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK 192 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~r 192 (217)
..|||.++++|..|+...|+.+|++++.+|||.--.|
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 4799999999999999999999999999999985433
No 130
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=72.10 E-value=4.7 Score=30.43 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=40.0
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCC--cceEEEEC--CcccC--------------CCCCccccCCCCCcEEEEE
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQ--ENLVFCFD--GDKIG--------------PEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~--~slrF~FD--G~rI~--------------~~~TP~sLgMEDGDiIDV~ 213 (217)
+.+.|.++.+|+.+++..|++-.+.+ -+++...+ |+.|- -+.+-.+||+++|++|-|.
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 46788999999999999999554433 33433221 22222 2445679999999999874
No 131
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=68.40 E-value=27 Score=25.09 Aligned_cols=55 Identities=11% Similarity=0.280 Sum_probs=41.3
Q ss_pred eEEEEEcCCChHHHHHHHHHhhcC-C----------CCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 155 LKQFRVYADDKFERLFKMYADKVN-L----------DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 155 ~v~FrIk~tT~L~KLf~aYae~~g-l----------~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...+.+...+++..|++..+.++. + -...+.+..||+.+.. +--+.+||.|.++.
T Consensus 28 ~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 28 EEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEEC
Confidence 356777777899999998877642 1 1356889999999863 34589999999864
No 132
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=67.58 E-value=14 Score=27.33 Aligned_cols=59 Identities=10% Similarity=0.266 Sum_probs=43.1
Q ss_pred CCCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCccc-CCCCCccc
Q 027888 141 ERAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKI-GPEATPAS 201 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-----v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI-~~~~TP~s 201 (217)
...+|+|+++.-++. ..|.|..+.+|+.++..-.++.++ +++=++.|+.-. ++++|..+
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHH
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHH
Confidence 456899999876652 379999999999999999999998 566444466533 33556543
No 133
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=67.41 E-value=24 Score=24.46 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=38.5
Q ss_pred EEEcCCChHHHHHHHHHhhcC------C-----CCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 158 FRVYADDKFERLFKMYADKVN------L-----DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 158 FrIk~tT~L~KLf~aYae~~g------l-----~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.+...+++..|++..+.++. + -...+.+..||+.+...+ -.+--+.+||.|.++.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 455556789999988887752 1 125688999999886321 1222489999998864
No 134
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=65.64 E-value=3.8 Score=38.81 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=55.4
Q ss_pred CCCcEEEEEE--eCCc-e---E-EEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC------CcccC-CCCCcccc--CC
Q 027888 141 ERAKIVVSIQ--DKGG-L---K-QFRVYADDKFERLFKMYADKVNLDQENLVFCFD------GDKIG-PEATPASL--EM 204 (217)
Q Consensus 141 ~~~kItIkV~--~qdg-~---v-~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD------G~rI~-~~~TP~sL--gM 204 (217)
....|.|-+. +... . + ++-|.+++++..|....++++|++.++=-.+|. .+.|. .+.|-.+. +|
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL 206 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDEL 206 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTC
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcc
Confidence 3445555554 4443 2 2 689999999999999999999999854334453 55677 78899999 99
Q ss_pred CCCcEEEEEe
Q 027888 205 EDNDIIEVHT 214 (217)
Q Consensus 205 EDGDiIDV~~ 214 (217)
.+||||-+..
T Consensus 207 ~~GdII~fQ~ 216 (530)
T 2ylm_A 207 MDGDIIVFQK 216 (530)
T ss_dssp CTTEEEEEEE
T ss_pred cCCCEEEEEe
Confidence 9999886654
No 135
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=64.36 E-value=38 Score=28.42 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=38.6
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
.|.|+|.-.||.+.|.|...++-+.|++.-|++.|+.. .-|-+.|
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 37888888898888999999999999999999999964 5566665
No 136
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=64.12 E-value=8.7 Score=25.87 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=37.6
Q ss_pred EEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 158 FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.+...+++..|.+.. +++...+.+..||+.+...+ -.+--+.+||.|+++.
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQHIVQDGDQILLFQ 61 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTCCCCTTEEECEEE
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCcCCCCCCEEEEEe
Confidence 3445667888887765 67788999999999996521 1123489999999874
No 137
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=62.87 E-value=10 Score=27.68 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=39.0
Q ss_pred EEEEcCC-ChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 157 QFRVYAD-DKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 157 ~FrIk~t-T~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.+... +++..|++.. +++...+.+..||+.|... .-.+--|.+||.|+++.
T Consensus 29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 29 DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 3445665 7888887754 7888899999999999653 22233599999999874
No 138
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.42 E-value=13 Score=24.89 Aligned_cols=48 Identities=8% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 162 ADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 162 ~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+++..|.+.. +++...+.+..||+.+..++ =.+.-+.+||.|+++.
T Consensus 12 ~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 12 EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEEE
T ss_pred CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEEe
Confidence 567888887755 67788899999999986531 1223589999999874
No 139
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=62.23 E-value=44 Score=28.45 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE--CCcc--cCCCCCcccc
Q 027888 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF--DGDK--IGPEATPASL 202 (217)
Q Consensus 141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F--DG~r--I~~~~TP~sL 202 (217)
.+..|.++|.-.||.+.|.|...++-+.|++.-|.+.|+.- .-|-+.| +|.. |.++.+-.+.
T Consensus 19 ~~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q 85 (314)
T 1h4r_A 19 QPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDH 85 (314)
T ss_dssp --CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGS
T ss_pred CCCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHc
Confidence 46789999998888888999999999999999999999964 4455554 4543 4444444443
No 140
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=62.09 E-value=15 Score=25.13 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=35.7
Q ss_pred cCCChHHHHHHHHHhhcC-----CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 161 YADDKFERLFKMYADKVN-----LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 161 k~tT~L~KLf~aYae~~g-----l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
...+++..|++..+.++. +....+.+..||+.+. . +--+.+||.|.++.
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T----TCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C----CCCCCCCCEEEEeC
Confidence 456788888888776542 2345678999999885 2 34689999999874
No 141
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=61.87 E-value=8.8 Score=26.13 Aligned_cols=53 Identities=6% Similarity=0.073 Sum_probs=38.1
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcce--EEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENL--VFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~sl--rF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+...+++..|.+....++. ....+ .+..||+.+..+ --+.+||.|+++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 34555566788889888776642 11334 899999999753 4699999999874
No 142
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=61.28 E-value=9 Score=28.67 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=43.2
Q ss_pred CCCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC-cccCCCCCcccc
Q 027888 141 ERAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG-DKIGPEATPASL 202 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-----v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG-~rI~~~~TP~sL 202 (217)
+..+|+|++..-++. ..|.|..+.+|..++..-.++.+++ ++=++.++ -.-+.++|..+|
T Consensus 10 ~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 10 SVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp --CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred CCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 467999999876552 3899999999999999999999988 55444444 223345666554
No 143
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=61.22 E-value=13 Score=27.38 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=50.0
Q ss_pred CCcEEEEEEeCCce-----EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCccc-CCCCCcccc----CCCCCcEE
Q 027888 142 RAKIVVSIQDKGGL-----KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKI-GPEATPASL----EMEDNDII 210 (217)
Q Consensus 142 ~~kItIkV~~qdg~-----v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI-~~~~TP~sL----gMEDGDiI 210 (217)
..+|+|+++.-++. ..|.|..+.+++.++..-.++.+++++.--|+| |+.-. ++++|..+| + +||-.+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLy 81 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLV 81 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEE
Confidence 46899999876542 389999999999999999999999886555555 55433 345665543 4 566555
Q ss_pred EEE
Q 027888 211 EVH 213 (217)
Q Consensus 211 DV~ 213 (217)
-.+
T Consensus 82 v~Y 84 (91)
T 4gdk_A 82 LHY 84 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 144
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=57.87 E-value=7.5 Score=27.28 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 162 ADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 162 ~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+++..|.. ..|+++..+...+||.-|... .-.+--|.+||.|+++.
T Consensus 13 ~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 5577777765 568889999999999998543 23345689999999874
No 145
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=55.20 E-value=61 Score=24.00 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=51.1
Q ss_pred EEEEEcCCChHHHHHHHHHhhc-CC----CCcceEEEECCcc--cCCCCCccccCCCCCcEEEEEec
Q 027888 156 KQFRVYADDKFERLFKMYADKV-NL----DQENLVFCFDGDK--IGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~-gl----~~~slrF~FDG~r--I~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.-+-|-...+|..+-.+.|.+. |. .+..+|...+|.. +..+.|..+.|+.-.|.|+|+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~~ 83 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFE 83 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEEC
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEEc
Confidence 4688999999999999888643 43 2368999999999 99999999999999999999853
No 146
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=52.03 E-value=6.6 Score=27.42 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=35.4
Q ss_pred EEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 158 FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.+...+++..|... .+++...+.+..||+.+..+ --+.+||.|+++.
T Consensus 25 ~~~~~~~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRA----VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHT----TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHH----hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 344555677777653 45777888999999999764 4699999998763
No 147
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=51.45 E-value=64 Score=31.26 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhccCCchhhhhhhccCCCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCC-Cc
Q 027888 105 ADDVIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLD-QE 182 (217)
Q Consensus 105 ~~~~l~~v~E~~k~~~~~~~~~e~~~~~~~~~~p~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~-~~ 182 (217)
|.-+++++..+.+.+--.-.|+..|+.+-. .+..|.++|.-.||. ..|.|...|+-+-|++..|.+.|+. ..
T Consensus 230 a~~c~~~L~rt~~~g~R~~~Ps~~Ei~Ai~------~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~ 303 (655)
T 3pvl_A 230 APYCEERLRRTFVNGTRTQPPSWLELQATK------SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRF 303 (655)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHH------HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCT
T ss_pred HHHHHHHHHHhhcCCCCCcCCCHHHHHHHH------cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccc
Confidence 455566665555443333334444444432 234688999988987 7899999999999999999999985 46
Q ss_pred ceEEEE
Q 027888 183 NLVFCF 188 (217)
Q Consensus 183 slrF~F 188 (217)
.|-+++
T Consensus 304 ~FgL~~ 309 (655)
T 3pvl_A 304 GFSLYI 309 (655)
T ss_dssp TEEEEE
T ss_pred cceeEE
Confidence 666666
No 148
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.82 E-value=33 Score=32.73 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=39.7
Q ss_pred CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
+..|.++|.-.||.+.|.|..+|+-.-|++.-|.+.|+.- .-|-|+|
T Consensus 2 ~k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 2 PKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEE
Confidence 3568999999999888999999999999999999999954 5566665
No 149
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=47.07 E-value=36 Score=23.95 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHhhcCC------C-------CcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 162 ADDKFERLFKMYADKVNL------D-------QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 162 ~tT~L~KLf~aYae~~gl------~-------~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+++..|+..-+.++.- + ...+++..||+.+...+- .+--+.+||.|.++.
T Consensus 24 ~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 24 SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILP 88 (93)
T ss_dssp CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEEC
Confidence 457899999888877631 1 125899999999874211 122389999998874
No 150
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=45.34 E-value=30 Score=27.22 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=34.5
Q ss_pred EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEE
Q 027888 146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFC 187 (217)
Q Consensus 146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~ 187 (217)
.|+|+-.||. ..++|..+.+...++..-|.++|+.. ..+.|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~ 56 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLV 56 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEE
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccccccc
Confidence 5777777887 68999999999999999999999974 334443
No 151
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=45.22 E-value=32 Score=26.02 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=34.8
Q ss_pred cEEEEEEeCC-------c-eEEEEEcCCChHHHHHHHHHhhcCCCC-----cceEEEE
Q 027888 144 KIVVSIQDKG-------G-LKQFRVYADDKFERLFKMYADKVNLDQ-----ENLVFCF 188 (217)
Q Consensus 144 kItIkV~~qd-------g-~v~FrIk~tT~L~KLf~aYae~~gl~~-----~slrF~F 188 (217)
.|.|+|..++ + .+.+.|..+..|..|+..-.+++++.. ..+++.|
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY 62 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 62 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEE
Confidence 3888888663 2 368999999999999999999888641 3366777
No 152
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=44.78 E-value=52 Score=25.18 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=49.3
Q ss_pred CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhc-CCCCcceEEEE--CCcccC-CCCCccccCCCCCcEEE
Q 027888 143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKV-NLDQENLVFCF--DGDKIG-PEATPASLEMEDNDIIE 211 (217)
Q Consensus 143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~-gl~~~slrF~F--DG~rI~-~~~TP~sLgMEDGDiID 211 (217)
...+|.|+-.+|. +.-+.+.+++++.|+..-.... +.....+.|+- =.+.|. .+.|-.++||-..-+|-
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 3466777777885 7888999999999998766643 34456666664 355554 36899999999866553
No 153
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=42.60 E-value=10 Score=26.99 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred EEEc--CCChHHHHHHHHHhhcCCC-CcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 158 FRVY--ADDKFERLFKMYADKVNLD-QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 158 FrIk--~tT~L~KLf~aYae~~gl~-~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
+.+. ..+++..|.. .+|++ +..+...+||+-|... .-.+--|.+||.|+++.
T Consensus 10 ~e~~~~~~~Tl~~LL~----~l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 10 STVDGAESLNVTELLS----ALKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EECSSCSCEEHHHHHH----HHTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred EEcCCCCCCcHHHHHH----HcCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 3444 5678888876 45788 8888999999998554 33345689999999864
No 154
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.64 E-value=57 Score=23.13 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=36.9
Q ss_pred EEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216 (217)
Q Consensus 147 IkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ 216 (217)
|.|...+|.+ +.+...++..-+ ||+-..++....+--.+||+.+..+ | -|++||+|+++...
T Consensus 8 i~v~tP~G~~-~~lp~GaT~~D~--A~~Ih~~lg~~~v~AkVNG~~v~L~-~----~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 8 VFVFTPKGDV-ISLPIGSTVIDF--AYAIHSAVGNRMIGAKVDGRIVPID-Y----KVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEECTTSCE-EEEETTCBHHHH--HHHHCHHHHHTEEEEEETTEEECTT-C----BCCTTCBEEEEECC
T ss_pred EEEECCCCCE-EEecCCCCHHHH--HHHhhhhhhcceEEEEECCEEcCCC-c----ccCCCCEEEEEccC
Confidence 5566677763 334444333333 3433333334556667799888664 3 48999999998654
No 155
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=41.52 E-value=1e+02 Score=22.72 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=39.9
Q ss_pred CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc
Q 027888 143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD 191 (217)
Q Consensus 143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~ 191 (217)
..++|++-.++.-+-++|..+..|.-|.+.-+.|..+. +-+.|.|.++
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 66899998888768999999999999999999999984 4455555655
No 156
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=41.48 E-value=41 Score=26.20 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=44.4
Q ss_pred CCcEEEEEEeCCc---eEEEEEcC---C----------------ChHHHHHHHHHhhcCCCC-----------cceEEEE
Q 027888 142 RAKIVVSIQDKGG---LKQFRVYA---D----------------DKFERLFKMYADKVNLDQ-----------ENLVFCF 188 (217)
Q Consensus 142 ~~kItIkV~~qdg---~v~FrIk~---t----------------T~L~KLf~aYae~~gl~~-----------~slrF~F 188 (217)
....+|.|...+. ..||+|+. + ..+..|...|....+... ..++-+|
T Consensus 46 ~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~~~~~~F~sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~aly 125 (174)
T 3qwx_X 46 PGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTF 125 (174)
T ss_dssp TTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEEETTEEESSHHHHHHHTTSSCSSSCCCCEECCCCCSEEEEESS
T ss_pred CCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEEECCeecCcHHHHhhhhhcCcccccccccccccccccEEEEec
Confidence 3456777776665 46888865 1 578888888876544220 1122222
Q ss_pred CCcccCCCCCccccCCCCCcEEEEEec
Q 027888 189 DGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 189 DG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
+= ....+.+|.+.-||+|.|..+
T Consensus 126 dy----~~~~~~eLsf~~Gd~i~v~~~ 148 (174)
T 3qwx_X 126 KF----TGERETDLPFEQGERLEILSK 148 (174)
T ss_dssp CB----CCSSTTBCCBCTTCEEEEEEC
T ss_pred Cc----ccCCCCccccccCCEEEEEEc
Confidence 21 233678999999999999754
No 157
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=40.52 E-value=1.1e+02 Score=22.59 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=50.0
Q ss_pred EEEEEcCCChHHHHHHHHHhhc-CC----CC-cceEEEECC--cccCCCCCccccCCCCCcEEEEEec
Q 027888 156 KQFRVYADDKFERLFKMYADKV-NL----DQ-ENLVFCFDG--DKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~-gl----~~-~slrF~FDG--~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.-+-|-...+|..+-.+.|-+- |. .+ ..++..++| +.+..+.|..+-||.--|+|||+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3578888999999999888632 32 22 479999999 9999999999999999999999864
No 158
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=40.32 E-value=45 Score=28.54 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=38.4
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
.+..|.++|.-.||. +.|.|...++-+.|++..|++.|+.. .-+-|.|
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 467789999988886 78999999999999999999999964 4455554
No 159
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=39.48 E-value=72 Score=23.00 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHhhcC-CC---------Ccce-------EEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 163 DDKFERLFKMYADKVN-LD---------QENL-------VFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 163 tT~L~KLf~aYae~~g-l~---------~~sl-------rF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
..++..|++..+.++. +. ...+ .+..||+.+...+ -.+--+.+||.|.++.
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILP 94 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEEC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEEC
Confidence 5889999998887742 11 1134 8999999885321 1223589999998864
No 160
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=37.92 E-value=58 Score=28.48 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF 188 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F 188 (217)
...+.++|.-.||. ..|.|...++-+.|++.-|++.|+.. ..|-+++
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 45688999999987 68999999999999999999999954 6677766
No 161
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=35.90 E-value=97 Score=23.14 Aligned_cols=56 Identities=7% Similarity=0.242 Sum_probs=47.0
Q ss_pred EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEE
Q 027888 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV 212 (217)
Q Consensus 157 ~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV 212 (217)
.-.|.=..|+..|...--.|.|++.+.+.|+..+..+.+..|--+-+.+-.-.+.+
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQi 61 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQL 61 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEE
Confidence 44566678999999999999999999999999998899998888877776665544
No 162
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=34.40 E-value=72 Score=20.99 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=36.6
Q ss_pred EEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 147 IkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
|+|.-++|.. +.+...+++..|...+... +....+--.+||+.+..+ --+++||.|++..-
T Consensus 3 i~i~~p~g~~-~~~~~g~T~~dla~~i~~~--l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 3 VMVFTPKGEI-KRLPQGATALDFAYSLHSD--LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp EEEECTTCCE-EEECTTCBHHHHHHHHCSH--HHHTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred EEEEcCCCCE-EEcCCCCcHHHHHHHHhhc--cccceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 3444455652 4555667777666554222 223455567899877664 45668999988753
No 163
>2w2s_A Matrix protein; viral assembly, viral morphogenesis, polymer, viral protein, VSV; 2.75A {Lagos bat virus}
Probab=32.73 E-value=10 Score=31.51 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=6.5
Q ss_pred cccCCcCCCCCcch
Q 027888 64 EEEEDWLPPPPKVM 77 (217)
Q Consensus 64 ~~~edwl~pppk~~ 77 (217)
|||+=|||||--++
T Consensus 27 ddddlwlpppeyvp 40 (202)
T 2w2s_A 27 DDDDLWMPPPEYVP 40 (202)
T ss_dssp ---CCEECCCC---
T ss_pred CcccccCCCccccc
Confidence 45788998775444
No 164
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=32.26 E-value=1.2e+02 Score=21.63 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=37.8
Q ss_pred EEEEEc--CCChHHHHHHHHHhhcCC-C------------CcceEEEECCcccC---CCCCccccCCCCCcEEEEEe
Q 027888 156 KQFRVY--ADDKFERLFKMYADKVNL-D------------QENLVFCFDGDKIG---PEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 156 v~FrIk--~tT~L~KLf~aYae~~gl-~------------~~slrF~FDG~rI~---~~~TP~sLgMEDGDiIDV~~ 214 (217)
..+.+. ..++++.|+...++++.- . ...+.+..||..+. +.+| -+.|||+|.++-
T Consensus 22 ~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~----~L~dgDeVa~~P 94 (99)
T 2qjl_A 22 HKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDY----ILEDGDIISFTS 94 (99)
T ss_dssp EEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGC----BCCTTCEEEEEE
T ss_pred EEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCc----CcCCCCEEEEEC
Confidence 455555 568999999988877631 1 12356889999764 3445 489999998764
No 165
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=30.80 E-value=87 Score=23.53 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=42.9
Q ss_pred CCCcEEEEEEeCCce-EEEEEcC-CChHHHHHH-HHHhhcCCCC-----cce-----------------EEEECCcccCC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYA-DDKFERLFK-MYADKVNLDQ-----ENL-----------------VFCFDGDKIGP 195 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~-tT~L~KLf~-aYae~~gl~~-----~sl-----------------rF~FDG~rI~~ 195 (217)
+..+|+|.|...++. ..|.|.+ .+.|..+++ ++ .+.- ..+ .|..||+.+.
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~----~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~- 79 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN----LVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN- 79 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT----CEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC-
T ss_pred ceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC----ccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh-
Confidence 456899999998875 4565552 233555443 33 1211 112 3444666554
Q ss_pred CCCccccCCCCCcEEEEEec
Q 027888 196 EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~k 215 (217)
.-+.++-+.|||.|++...
T Consensus 80 -~Ga~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 80 -TSADQTPVSDGDAFELTLK 98 (101)
T ss_dssp -SCGGGCBCCTTCEEEEEEE
T ss_pred -hchhheEecCCCEEEEEEe
Confidence 4678899999999998764
No 166
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A
Probab=30.67 E-value=86 Score=26.83 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=44.2
Q ss_pred cEEEEEEeCCceEEEEEcCC-----------------------------ChHHHHHHHHHhhcCC------CC-------
Q 027888 144 KIVVSIQDKGGLKQFRVYAD-----------------------------DKFERLFKMYADKVNL------DQ------- 181 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~t-----------------------------T~L~KLf~aYae~~gl------~~------- 181 (217)
..+|.|...+...||+|.+. ..+..|++.|...... +.
T Consensus 46 ~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~~~ 125 (304)
T 2eyz_A 46 DYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGS 125 (304)
T ss_dssp CCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSSCCCCCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSCCS
T ss_pred CEEEEEEECCEEEEEEEeeccccccccccccccccccCCCeEEeCCcEECCHHHHHHHhhhCccccceeccccccccccc
Confidence 46788876555579999872 5788999999875310 00
Q ss_pred ---------cceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 182 ---------ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 182 ---------~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
..++-+|+ .....+.+|.+.-||+|.|..+
T Consensus 126 g~~~~~~~~~~~~alyd----y~~~~~~eLsf~~Gd~i~v~~~ 164 (304)
T 2eyz_A 126 GVILRQEEAEYVRALFD----FNGNDEEDLPFKKGDILRIRDK 164 (304)
T ss_dssp CCCCCCCCCCEEEECSC----CCCSCSSSCCCCTTCEEEEEEC
T ss_pred cccCCcccceeEEEEee----ecCCCCCcCcccCCCEEEEEEe
Confidence 01222222 1234577899999999999764
No 167
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=30.20 E-value=19 Score=23.89 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.4
Q ss_pred ECCcccCCCCCccccCCCCCcEEEEEec
Q 027888 188 FDGDKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 188 FDG~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
|+...=...+.+.+|.++-||+|.|..+
T Consensus 13 y~~~~~~~~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 13 YYGIPPPPGAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp BSSSSCCGGGCSCBCCBCTTCEEEEEEC
T ss_pred EEecCCCCCCCCCcCCcCCCCEEEEEeC
Confidence 3333333334577999999999999865
No 168
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=29.81 E-value=2.2e+02 Score=24.15 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=43.4
Q ss_pred cEEEEEEeCCc---eEEEEEcC---C----------------ChHHHHHHHHHhhcCCCC-----------cceEEEECC
Q 027888 144 KIVVSIQDKGG---LKQFRVYA---D----------------DKFERLFKMYADKVNLDQ-----------ENLVFCFDG 190 (217)
Q Consensus 144 kItIkV~~qdg---~v~FrIk~---t----------------T~L~KLf~aYae~~gl~~-----------~slrF~FDG 190 (217)
..+|.|...+. ..||+|.. + ..+..|...|........ ..++-+|+
T Consensus 77 ~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~d- 155 (308)
T 3qwy_A 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFK- 155 (308)
T ss_dssp CEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSC-
T ss_pred CEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEece-
Confidence 45677776655 45788855 1 467888888876554210 12232222
Q ss_pred cccCCCCCccccCCCCCcEEEEEec
Q 027888 191 DKIGPEATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 191 ~rI~~~~TP~sLgMEDGDiIDV~~k 215 (217)
.....+.+|.+.-||+|.|..+
T Consensus 156 ---y~~~~~~eLsf~~Gd~i~v~~~ 177 (308)
T 3qwy_A 156 ---FTGERETDLPFEQGERLEILSK 177 (308)
T ss_dssp ---BCCSSTTBCCBCTTCEEEEEEC
T ss_pred ---EcCCCCCcCcCCCCCEEEEEEc
Confidence 1235778999999999999764
No 169
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=26.47 E-value=1.9e+02 Score=21.18 Aligned_cols=53 Identities=9% Similarity=0.235 Sum_probs=39.3
Q ss_pred CCcEEEEEEeCCceEEEEEcCC--ChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888 142 RAKIVVSIQDKGGLKQFRVYAD--DKFERLFKMYADKVNLDQENLVFCF---DGDKIG 194 (217)
Q Consensus 142 ~~kItIkV~~qdg~v~FrIk~t--T~L~KLf~aYae~~gl~~~slrF~F---DG~rI~ 194 (217)
+..+.|+.+....-..|.|.++ .+|..++......+.+....+...| +|.-|.
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEE
T ss_pred CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEee
Confidence 4567777665554458999755 8999999999999998777888888 455543
No 170
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=24.18 E-value=2.2e+02 Score=21.13 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=35.0
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCcccc
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASL 202 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~sL 202 (217)
..|.|..+.+++.++..-.++++++++.--|+| +|.....+.|..+|
T Consensus 46 ~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 46 RKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 379999999999999999999999885544556 55544445555554
No 171
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=23.88 E-value=1.4e+02 Score=23.81 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=36.8
Q ss_pred EEcCCChHHHHHHHHHhhcC-CC---------CcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888 159 RVYADDKFERLFKMYADKVN-LD---------QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 159 rIk~tT~L~KLf~aYae~~g-l~---------~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~ 214 (217)
.+.. +++..|+...+.++. +. ...+.+..||+.+...+- .+--+.+||.|.++.
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFP 82 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEEC
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEEC
Confidence 3444 788888888877642 11 356789999999875321 122499999999864
No 172
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=22.48 E-value=2.2e+02 Score=26.22 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC--cceEEEEC
Q 027888 142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ--ENLVFCFD 189 (217)
Q Consensus 142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~--~slrF~FD 189 (217)
+..|.++|.-.+|. +.|.|...++-+.|++.-|++.|+.. +.|-+++.
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 45688899888886 78999999999999999999999963 56666653
No 173
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=21.96 E-value=1.3e+02 Score=23.46 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=44.1
Q ss_pred CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCC---------CcceEEEECCcccC
Q 027888 141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLD---------QENLVFCFDGDKIG 194 (217)
Q Consensus 141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~---------~~slrF~FDG~rI~ 194 (217)
++..|..+|-..+.. +.++++.+..-+.|+.+-+++++.. +--+...+.|+++-
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~v 69 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVL 69 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEE
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEee
Confidence 456788888887765 6889999999999999999999874 34566778998875
No 174
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=21.95 E-value=1.1e+02 Score=23.38 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=34.5
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCccc
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPAS 201 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~s 201 (217)
..|.|..+.+++.++..-.++++++++.--|+| |+.....+.|..+
T Consensus 49 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 49 RKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 479999999999999999999999886655665 6643333444443
No 175
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=21.50 E-value=4e+02 Score=23.04 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=54.8
Q ss_pred cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCC----CCcceEEEE-C-----CcccCCCCCccccCCCCCcEEEEE
Q 027888 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNL----DQENLVFCF-D-----GDKIGPEATPASLEMEDNDIIEVH 213 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl----~~~slrF~F-D-----G~rI~~~~TP~sLgMEDGDiIDV~ 213 (217)
.|.|+|.-.+....+...++++...+...-+++.+- +....-+++ + |.=+..+.|-+.+++.+|+.|...
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 355666545434689999999999999998888853 567777777 2 344778889999999999999865
Q ss_pred ec
Q 027888 214 TK 215 (217)
Q Consensus 214 ~k 215 (217)
.+
T Consensus 83 ~~ 84 (371)
T 3ivf_A 83 KK 84 (371)
T ss_dssp EC
T ss_pred Cc
Confidence 43
No 176
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=21.47 E-value=3e+02 Score=21.60 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=41.7
Q ss_pred cEEEEEEeCCceEEEEEcCC------------ChHHHHHHHHHhhcCCCC----------------cceEEEECCcccCC
Q 027888 144 KIVVSIQDKGGLKQFRVYAD------------DKFERLFKMYADKVNLDQ----------------ENLVFCFDGDKIGP 195 (217)
Q Consensus 144 kItIkV~~qdg~v~FrIk~t------------T~L~KLf~aYae~~gl~~----------------~slrF~FDG~rI~~ 195 (217)
..+|.+...+...||+|.+. ..+..|...|.... +.. ..++-+|+= .
T Consensus 94 ~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~al~~y----~ 168 (217)
T 1gri_A 94 DFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTS-VSRNQQIFLRDIEQVPQQPTYVQALFDF----D 168 (217)
T ss_dssp CEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSC-SSSSTTCCCCBCCCCCCCCCEEEESSCC----C
T ss_pred CEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccc-cccccceeecccccCCCCceEEEecCCc----c
Confidence 45677776554468888753 46788888886532 211 122222221 1
Q ss_pred CCCccccCCCCCcEEEEEec
Q 027888 196 EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~k 215 (217)
.+.+.+|.+.-||+|.|..+
T Consensus 169 ~~~~~eL~~~~Gd~i~v~~~ 188 (217)
T 1gri_A 169 PQEDGELGFRRGDFIHVMDN 188 (217)
T ss_dssp CSSTTBCCCCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCCEEEEEEe
Confidence 24568999999999999764
No 177
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=21.14 E-value=63 Score=20.69 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.6
Q ss_pred CCccccCCCCCcEEEEEe
Q 027888 197 ATPASLEMEDNDIIEVHT 214 (217)
Q Consensus 197 ~TP~sLgMEDGDiIDV~~ 214 (217)
+.+.+|.+.-||+|.|..
T Consensus 15 ~~~~eLs~~~Gd~i~v~~ 32 (62)
T 2fpe_A 15 RHEDELELEVDDPLLVEL 32 (62)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred cCcCcCcCCCCCEEEEEE
Confidence 567899999999999964
No 178
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=20.77 E-value=1.7e+02 Score=22.75 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=42.4
Q ss_pred EEEEEcCCChHHHHHHHHHhhcCCCCcceEEE-ECCcccC-CCCCcccc-----CCCCCcEEEEE
Q 027888 156 KQFRVYADDKFERLFKMYADKVNLDQENLVFC-FDGDKIG-PEATPASL-----EMEDNDIIEVH 213 (217)
Q Consensus 156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~-FDG~rI~-~~~TP~sL-----gMEDGDiIDV~ 213 (217)
..|.|..+.++..++..-.++++++++.--|+ |-|..+. .++|..+| + +||=..-.+
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd-eDGfLyv~Y 118 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD-EDGFLYMVY 118 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC-TTSCEEEEE
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC-CCCEEEEEE
Confidence 47999999999999999999999999777777 8665554 35555555 3 566544433
No 179
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=20.35 E-value=65 Score=21.67 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=16.7
Q ss_pred CCCccccCCCCCcEEEEEec
Q 027888 196 EATPASLEMEDNDIIEVHTK 215 (217)
Q Consensus 196 ~~TP~sLgMEDGDiIDV~~k 215 (217)
..++.+|.+.-||+|.|..+
T Consensus 17 a~~~~ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 17 PQNDDELELRDGDIVDVMEK 36 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEE
T ss_pred CCCcCCcCCCCCCEEEEeEe
Confidence 35788999999999998754
Done!