BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027889
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FTZ2|EBP_ORYSJ Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza
sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1
Length = 219
Score = 224 bits (570), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 146/213 (68%)
Query: 3 HPYSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMFIIWRISGRSPRKLSKTDRWLMIWW 62
HPY+P++L LP F P S +++ S ++ +W ISGR R+LS TDRWLM WW
Sbjct: 7 HPYAPAELHLPGFVPLQLSQAQILVPYLATSLFLLLAVWLISGRCSRRLSDTDRWLMCWW 66
Query: 63 AVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIF 122
A +GL HII EG + F+P F+ +++ +YF EVWKEYSKGDSRY +R A + +EGI +
Sbjct: 67 AFTGLTHIIIEGTFVFAPNFFSNQNPSYFDEVWKEYSKGDSRYVARDPATVTVEGITAVL 126
Query: 123 VGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFI 182
GPASLLA+YAIA GKSYS+ILQF + L Q YG +YFITA+L+G F + +++++YFI
Sbjct: 127 EGPASLLAVYAIASGKSYSHILQFTVCLGQLYGCLVYFITAYLDGFNFWTSPFYFWAYFI 186
Query: 183 AQGGTWLLFPALIMIRCWKRICAACLLLDHKTK 215
+W++ P +I IR WK+ICAA KTK
Sbjct: 187 GANSSWVVIPTMIAIRSWKKICAAFQGEKVKTK 219
>sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
OS=Arabidopsis thaliana GN=At1g20050 PE=2 SV=1
Length = 223
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/204 (53%), Positives = 143/204 (70%), Gaps = 3/204 (1%)
Query: 1 MSHPYSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMFIIWRISGRSPRKLSKTDRWLMI 60
++HPY P DL LP + P S S + + +S LV+ ++W + GR K +K D+ LM
Sbjct: 4 LAHPYVPRDLNLPGYVPISMSMSSIVSIYLGSSLLVVSLVWLLFGR---KKAKLDKLLMC 60
Query: 61 WWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAV 120
WW +GL H+I EGY+ FSPEF+KD + Y AEVWKEYSKGDSRY R AV+++EGI
Sbjct: 61 WWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRDSAVVSVEGITA 120
Query: 121 IFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSY 180
+ VGPASLLA+YAIAK KSYSY+LQ A+S+ Q YG +YFITA LEG+ FA ++YYSY
Sbjct: 121 VIVGPASLLAIYAIAKEKSYSYVLQLAISVCQLYGCLVYFITAILEGDNFATNSFYYYSY 180
Query: 181 FIAQGGTWLLFPALIMIRCWKRIC 204
+I W+L P+LI RCWK+IC
Sbjct: 181 YIGANCWWVLIPSLISFRCWKKIC 204
>sp|Q9JJ46|EBP_RAT 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Rattus
norvegicus GN=Ebp PE=2 SV=3
Length = 230
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 10/218 (4%)
Query: 3 HPYSPSDLILPDFTPNLRSTSEVHAWNGIASF--LVMFIIWRISGR-SPRKLSKTDRWLM 59
HPY P L L +F PN T H G+ SF +++ I W +S R S L R +
Sbjct: 9 HPYWPRHLRLDNFVPNDLPTW--HILVGLFSFSGVLIVITWLLSSRVSVVPLGTGRRLAL 66
Query: 60 IWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
W+AV IH++ EG++ F E + + +++WKEYSKGDSRY ++ +E +
Sbjct: 67 CWFAVCTFIHLVIEGWFSFYHEILLEDQA-FLSQLWKEYSKGDSRYILSDGFIVCMESVT 125
Query: 120 VIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG---NKFACTRYF 176
GP SL + A + + + ++LQ +S+ Q YG LYF+T +G + YF
Sbjct: 126 ACLWGPLSLWVVIAFLRHQPFRFVLQLVVSVGQIYGDVLYFLTELRDGFQHGELGHPLYF 185
Query: 177 YYSYFIAQGGTWLLFPALIMIRCWKRICAACLLLDHKT 214
++ YF+ WL+ P +++ K + A +LD+K
Sbjct: 186 WF-YFVIMNAIWLVIPGILVFDAIKHLTNAQSMLDNKV 222
>sp|P70245|EBP_MOUSE 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Mus musculus
GN=Ebp PE=1 SV=3
Length = 230
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Query: 3 HPYSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMFIIWRISGR-SPRKLSKTDRWLMIW 61
HPY P L L +F PN TS + S ++ I W +S R S L R + W
Sbjct: 9 HPYWPRHLKLDNFVPNDLPTSHILVGLFSISGGLIVITWLLSSRASVVPLGAGRRLALCW 68
Query: 62 WAVSGLIHIIHEGYWF--FSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
+AV IH++ EG WF ++ +D++ + +++WKEYSKGDSRY V+ +E +
Sbjct: 69 FAVCTFIHLVIEG-WFSLYNGILLEDQA--FLSQLWKEYSKGDSRYILSDSFVVCMETVT 125
Query: 120 VIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG---NKFACTRYF 176
GP SL + A + + + ++LQ +S+ Q YG LYF+T EG + YF
Sbjct: 126 ACLWGPLSLWVVIAFLRQQPFRFVLQLVVSMGQIYGDVLYFLTELHEGLQHGEIGHPVYF 185
Query: 177 YYSYFIAQGGTWLLFPALIMIRCWKRICAACLLLDHKT 214
++ YF+ WL+ P+++++ K + +A +LD K
Sbjct: 186 WF-YFVFLNAVWLVIPSILVLDAIKHLTSAQSVLDSKV 222
>sp|Q15125|EBP_HUMAN 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Homo sapiens
GN=EBP PE=1 SV=3
Length = 230
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 10/215 (4%)
Query: 3 HPYSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMFIIWRISGRSPR-KLSKTDRWLMIW 61
HPY P L L +F PN R T + A + +++ W +SGR+ L R + W
Sbjct: 9 HPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGTWRRLSLCW 68
Query: 62 WAVSGLIHIIHEGYWFFSPEFYKDKSGN--YFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
+AV G IH++ EG WF +Y+D G+ + +++WKEY+KGDSRY + +E I
Sbjct: 69 FAVCGFIHLVIEG-WFVL--YYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVCMETIT 125
Query: 120 VIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG---NKFACTRYF 176
GP SL + A + +ILQ +S+ Q YG LYF+T +G + YF
Sbjct: 126 ACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPLYF 185
Query: 177 YYSYFIAQGGTWLLFPALIMIRCWKRICAACLLLD 211
++ YF+ WL+ P ++++ K + A LD
Sbjct: 186 WF-YFVFMNALWLVLPGVLVLDAVKHLTHAQSTLD 219
>sp|Q60490|EBP_CAVPO 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Cavia
porcellus GN=EBP PE=1 SV=3
Length = 229
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 20/223 (8%)
Query: 3 HPYSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMF-----IIWRISGR-SPRKLSKTDR 56
HPY P L L F PN ++ AW + +F +W +S R S L R
Sbjct: 10 HPYWPRHLRLDHFVPN-----DLSAWYIVTVLFTVFGALVVTMWLLSSRASVVPLGTWRR 64
Query: 57 WLMIWWAVSGLIHIIHEGYWF--FSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLA 114
+ W+AV +H++ EG WF + D++ + +++WKEY+KGDSRY ++
Sbjct: 65 LSVCWFAVCAFVHLVIEG-WFVLYQKAILGDQA--FLSQLWKEYAKGDSRYIIEDNFIIC 121
Query: 115 IEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG---NKFA 171
+E I V+ GP SL A+ A + Y+LQF +SL Q YG LYF+T + +G +
Sbjct: 122 MESITVVLWGPLSLWAVIAFLRQHPSRYVLQFVISLGQIYGDLLYFLTEYRDGFQHGEMG 181
Query: 172 CTRYFYYSYFIAQGGTWLLFPALIMIRCWKRICAACLLLDHKT 214
YF++ YF WL+ P ++ K+ A LD K
Sbjct: 182 HPIYFWF-YFFFMNVLWLVIPGVLFFDSVKQFYGAQNALDTKV 223
>sp|Q9D0P0|EBPL_MOUSE Emopamil-binding protein-like OS=Mus musculus GN=Ebpl PE=2 SV=1
Length = 206
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 46 RSPRKLSKTDRWLMIWWAVSGLIHIIHEG-YWFFSPEFYKDKSGNYFAEVWKEYSKGDSR 104
R R S +RW++ W L+H + EG + + S S A +WKEY K D+R
Sbjct: 31 RLGRGRSAVERWVLAWLCYDSLVHFVLEGAFVYLSIVGNVADSQGLIASLWKEYGKADTR 90
Query: 105 YASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAF 164
+ V+++E + V+ G +L+ +YAI K K Y + +Q L + + YG + F +
Sbjct: 91 WLYSDPTVVSLEILTVVLDGLLALVLIYAIVKEKYYRHFVQIVLCVCELYGCWMTFFPEW 150
Query: 165 LEGNKFACTRYFYY--SYFIAQGGTWLLFPALIMIRCWKRI 203
L G+ T + Y Y + G W+L P L++ + W +
Sbjct: 151 LVGSPSLNTSSWLYLWVYLVFFNGLWVLIPGLLLWQSWVEL 191
>sp|Q9BY08|EBPL_HUMAN Emopamil-binding protein-like OS=Homo sapiens GN=EBPL PE=1 SV=1
Length = 206
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 46 RSPRKLSKTDRWLMIWWAVSGLIHIIHEG-YWFFSPEFYKDKSGNYFAEVWKEYSKGDSR 104
R R DR +IW L+H EG + + S S A +WKEY K D+R
Sbjct: 31 RLGRGQGAADRGALIWLCYDALVHFALEGPFVYLSLVGNVANSDGLIASLWKEYGKADAR 90
Query: 105 YASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAF 164
+ ++++E + V G +L +YAI K K Y + LQ L + + YG + F+ +
Sbjct: 91 WVYFDPTIVSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCELYGCWMTFLPEW 150
Query: 165 LEGNKFACTRYFYYS--YFIAQGGTWLLFPALIMIRCWKRI 203
L + T + Y Y G W+L P L++ + W +
Sbjct: 151 LTRSPNLNTSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLEL 191
>sp|Q55E32|EBP_DICDI Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
OS=Dictyostelium discoideum GN=ebp PE=2 SV=1
Length = 219
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 53 KTDRWLMIWWAVSGLIHIIHEG-YWFFSPEFYKDKSGNY------------------FAE 93
K ++ ++ W SGLIHII EG Y FF+ E K + ++ +A+
Sbjct: 24 KREKLVVFWLLWSGLIHIILEGSYGFFAHEVTKASTVSFTEKMLELVPLENAWNPHWYAQ 83
Query: 94 VWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQF 153
++ +Y+K D RYA + V+ + ++ G A L + + K + LQ L +Q
Sbjct: 84 LYSQYAKYDLRYAIQDPMVVFFCFLELV-QGAACFLLVICVIKQARIRHALQIFLCSIQG 142
Query: 154 YGSSLYFITAFLEG---NKFACTRYFYYSYFIAQGGTWLLFPALIMIRCWKRICAACLLL 210
G+ YFIT ++ G + + + + Y + G WLL P ++ I+ + I ++
Sbjct: 143 LGTVFYFITPYIYGLWEQQISSDPFELWVYVVGLNGLWLLVPIILTIQSFIAINKQFSIV 202
Query: 211 DHKTK 215
+ TK
Sbjct: 203 ESTTK 207
>sp|Q9PU17|LPA11_XENLA Lysophosphatidic acid receptor 1-A OS=Xenopus laevis GN=lpar1-a
PE=2 SV=1
Length = 366
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 73 EGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMY 132
+ Y+ + F+ ++SG Y A W SK V+ + IF+ A+LL M
Sbjct: 25 QCYYNETIAFFYNRSGKYLATEWNAVSK----------LVMGLGITVCIFIMLANLLVMV 74
Query: 133 AIAKGKSYS---YILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTWL 189
AI + + Y L L+ F+ YF F G TR S TWL
Sbjct: 75 AIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPN---TRRLTVS-------TWL 124
Query: 190 LFPALI 195
L LI
Sbjct: 125 LRQGLI 130
>sp|P61794|LPAR1_RAT Lysophosphatidic acid receptor 1 OS=Rattus norvegicus GN=Lpar1 PE=2
SV=1
Length = 364
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 23/127 (18%)
Query: 72 HEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAM 131
+ ++ S F+ ++SG Y A W SK V+ + +F+ A+LL M
Sbjct: 22 QQCFYNESIAFFYNRSGKYLATEWNTVSK----------LVMGLGITVCVFIMLANLLVM 71
Query: 132 YAIAKGKSYS---YILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTW 188
AI + + Y L L+ F+ YF F G TR S TW
Sbjct: 72 VAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPN---TRRLTVS-------TW 121
Query: 189 LLFPALI 195
LL LI
Sbjct: 122 LLRQGLI 128
>sp|P61793|LPAR1_MOUSE Lysophosphatidic acid receptor 1 OS=Mus musculus GN=Lpar1 PE=2 SV=1
Length = 364
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 23/127 (18%)
Query: 72 HEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAM 131
+ ++ S F+ ++SG Y A W SK V+ + +F+ A+LL M
Sbjct: 22 QQCFYNESIAFFYNRSGKYLATEWNTVSK----------LVMGLGITVCVFIMLANLLVM 71
Query: 132 YAIAKGKSYS---YILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTW 188
AI + + Y L L+ F+ YF F G TR S TW
Sbjct: 72 VAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPN---TRRLTVS-------TW 121
Query: 189 LLFPALI 195
LL LI
Sbjct: 122 LLRQGLI 128
>sp|P46628|LPAR1_SHEEP Lysophosphatidic acid receptor 1 OS=Ovis aries GN=LPAR1 PE=2 SV=1
Length = 393
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 23/117 (19%)
Query: 82 FYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYS 141
F+ ++SG Y A W SK V+ + IF+ A+LL M AI + +
Sbjct: 32 FFYNRSGKYLATEWNTVSK----------LVMGLGITVCIFIMLANLLVMVAIYVNRRFH 81
Query: 142 ---YILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTWLLFPALI 195
Y L L+ F+ YF F G TR S TWLL LI
Sbjct: 82 FPIYYLMANLAAADFFAGLAYFYLMFNTGPN---TRRLTVS-------TWLLRQGLI 128
>sp|Q28031|LPAR1_BOVIN Lysophosphatidic acid receptor 1 OS=Bos taurus GN=LPAR1 PE=2 SV=1
Length = 364
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 79 SPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGK 138
S F+ ++SG Y A W +K V+ + IF+ A+LL M AI +
Sbjct: 29 SIAFFYNRSGKYLATEWNTVTK----------LVMGLGITVCIFIMLANLLVMVAIYVNR 78
Query: 139 SYS---YILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTWLLFPALI 195
+ Y L L+ F+ YF F G TR S TWLL LI
Sbjct: 79 RFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPN---TRRLTVS-------TWLLRQGLI 128
>sp|Q14DH7|ACSS3_MOUSE Acyl-CoA synthetase short-chain family member 3, mitochondrial
OS=Mus musculus GN=Acss3 PE=2 SV=2
Length = 682
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 60 IWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
+WWA S L ++ Y + P + + + V E + A + VLA G+A
Sbjct: 330 VWWAASDLGWVVGHSYICYGPLLHGNTT------VLYEGKPVGTPDAGAYFRVLAEHGVA 383
Query: 120 VIFVGPASLLAMY----AIAKGKSYS 141
+F P ++ A+ A GK YS
Sbjct: 384 ALFTAPTAIRAIRQQDPGAALGKQYS 409
>sp|Q5REB8|ACSS3_PONAB Acyl-CoA synthetase short-chain family member 3, mitochondrial
OS=Pongo abelii GN=ACSS3 PE=2 SV=1
Length = 686
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 60 IWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
+WWA S L ++ Y + P + + + V E + A + VLA G+A
Sbjct: 335 VWWAASDLGWVVGHSYICYGPLLHGNTT------VLYEGKPVGTPDAGAYFRVLAEHGVA 388
Query: 120 VIFVGPASLLAMY----AIAKGKSYS 141
+F P ++ A+ A GK YS
Sbjct: 389 ALFTAPTAIRAIRQQDPGAALGKQYS 414
>sp|Q9H6R3|ACSS3_HUMAN Acyl-CoA synthetase short-chain family member 3, mitochondrial
OS=Homo sapiens GN=ACSS3 PE=1 SV=1
Length = 686
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 60 IWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
+WWA S L ++ Y + P + + + V E + A + VLA G+A
Sbjct: 335 VWWAASDLGWVVGHSYICYGPLLHGNTT------VLYEGKPVGTPDAGAYFRVLAEHGVA 388
Query: 120 VIFVGPASLLAMY----AIAKGKSYS 141
+F P ++ A+ A GK YS
Sbjct: 389 ALFTAPTAIRAIRQQDPGAALGKQYS 414
>sp|A7MB45|ACSS3_BOVIN Acyl-CoA synthetase short-chain family member 3, mitochondrial
OS=Bos taurus GN=ACSS3 PE=2 SV=1
Length = 686
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 60 IWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119
+WWA S L ++ Y + P + + + V E + A + VLA G+A
Sbjct: 334 VWWAASDLGWVVGHSYICYGPLLHGNTT------VLYEGKPVGTPDAGAYFRVLAEHGVA 387
Query: 120 VIFVGPASLLAMY----AIAKGKSYS 141
+F P ++ A+ A GK YS
Sbjct: 388 ALFTAPTAIRAIRQQDPGAALGKQYS 413
>sp|Q8BXB6|SO2B1_MOUSE Solute carrier organic anion transporter family member 2B1 OS=Mus
musculus GN=Slco2b1 PE=1 SV=1
Length = 683
Score = 30.4 bits (67), Expect = 9.0, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 53 KTDRWLMIWW----AVSGLIHIIHEGYWFFSPEFYKDKSGNYF-----AEVWKEYSKGDS 103
K RW+ WW SGL+ + Y+FF E K+K +F A SKG+
Sbjct: 260 KDPRWVGAWWLGFLISSGLVVLASSPYFFFPREMPKEKHEFHFRRKVLASAASTASKGED 319
Query: 104 RYASRHVAVLAIEGIAVI 121
+S+H + G+A I
Sbjct: 320 -LSSQHEPLKKQAGLAQI 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,271,992
Number of Sequences: 539616
Number of extensions: 3253125
Number of successful extensions: 8140
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8108
Number of HSP's gapped (non-prelim): 23
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)