Query 027889
Match_columns 217
No_of_seqs 127 out of 264
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05241 EBP: Emopamil binding 100.0 1.3E-63 2.7E-68 424.2 16.9 188 26-213 2-194 (194)
2 KOG4826 C-8,7 sterol isomerase 100.0 1.4E-60 3E-65 405.1 13.6 208 2-211 5-216 (229)
3 PF10914 DUF2781: Protein of u 96.5 0.0017 3.8E-08 53.0 2.4 145 55-203 1-149 (150)
4 PF04238 DUF420: Protein of un 41.2 1.7E+02 0.0038 23.5 7.5 97 23-142 5-107 (133)
5 PF12273 RCR: Chitin synthesis 34.4 29 0.00062 27.4 1.9 23 25-47 4-26 (130)
6 PF01102 Glycophorin_A: Glycop 34.1 46 0.001 26.7 3.1 23 25-47 70-92 (122)
7 PF14102 Caps_synth_CapC: Caps 29.5 35 0.00076 27.1 1.7 53 5-59 16-68 (121)
8 CHL00186 psaI photosystem I su 28.6 89 0.0019 20.0 3.0 28 183-210 3-30 (36)
9 PRK06287 cobalt transport prot 25.1 1.5E+02 0.0032 23.0 4.5 35 10-45 64-99 (107)
10 PRK11877 psaI photosystem I re 23.4 1.1E+02 0.0023 19.8 2.8 27 181-207 5-31 (38)
11 PF03790 KNOX1: KNOX1 domain ; 21.5 23 0.0005 23.7 -0.6 8 1-8 8-15 (45)
No 1
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-63 Score=424.21 Aligned_cols=188 Identities=38% Similarity=0.725 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHhhhheeEeceeeeecccccCCCCchhHHHHHhhhcCcccc
Q 027889 26 HAWNGIASFLVMFIIWRISGRSPRKLSKTDRWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGDSRY 105 (217)
Q Consensus 26 l~~~~~~~~~~~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~~~iH~~~EG~F~~~~~~~~~~~~~~~a~LWkeYa~~DsRY 105 (217)
++.+++++++++.+++.+++|.+|++++.||++++||++||+||+++||+|++++.++++.++++++|+||||+|+|+||
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY 81 (194)
T PF05241_consen 2 LAIFLAGCAAVLLIAYLLSRRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRY 81 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCccc
Confidence 56777889999999999999888999999999999999999999999999999999998844459999999999999999
Q ss_pred ccCCCcEEeeehhhhhhhhhHHHHHHHHHHhCCCchhHHHHHHHHHHhhcceeeeehhhhcC----CCCC-CCchhhhhh
Q 027889 106 ASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG----NKFA-CTRYFYYSY 180 (217)
Q Consensus 106 ~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qlyG~vlYf~te~~~G----~~~~-~~~~yfW~y 180 (217)
+++|++++|+|++|+++|||+|+++++++.+||++||++|+++|++|+|||+|||+||+++| .+++ +|++|||+|
T Consensus 82 ~~~D~~vv~~e~~t~l~~Gpl~l~~~~~i~~~~~~r~~l~i~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y 161 (194)
T PF05241_consen 82 LTSDPFVVCMESITVLLEGPLCLLAAYLIAKRSPYRHFLQIVVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFY 161 (194)
T ss_pred ccCCCcEEeehhHHHHHHhHHHHHHHHHHHhCchHHHHHHHHHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999 3445 999999999
Q ss_pred hheeCcchhhhhHHHHHHHHHHHHHHHhhhhcc
Q 027889 181 FIAQGGTWLLFPALIMIRCWKRICAACLLLDHK 213 (217)
Q Consensus 181 ~v~~N~~WivvP~~~l~~s~~~i~~a~~~~~~k 213 (217)
||++|++|+++|++++++|+++|++|++.+++|
T Consensus 162 ~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 194 (194)
T PF05241_consen 162 FVFPNGIWIVVPLLLLYQSWKEIARAFRAAQKK 194 (194)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999876
No 2
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-60 Score=405.07 Aligned_cols=208 Identities=40% Similarity=0.771 Sum_probs=197.0
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHhhhheeEeceeeeecc
Q 027889 2 SHPYSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMFIIWRISGRSPRKLSKTDRWLMIWWAVSGLIHIIHEGYWFFSPE 81 (217)
Q Consensus 2 ~hpy~P~~~~i~~y~~n~~~~~~il~~~~~~~~~~~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~~~iH~~~EG~F~~~~~ 81 (217)
.|||+|++++||+|+|++++...+.++.++++++++..+|++++|. +-...||++.||+++||+||+++||||++++.
T Consensus 5 ~hpy~p~~l~l~~~v~i~~~~~~~~sil~~~~~l~v~~~~lls~~~--~~~~L~~w~l~Wl~vsGlih~v~egyfv~~p~ 82 (229)
T KOG4826|consen 5 LHPYWPQHLRLDNFVPIDRPTWHILSILLSVTLLLVVTTWLLSGRA--AVVVLDKWVLCWLAVSGLIHLVLEGYFVFRPE 82 (229)
T ss_pred cccccHHHcCccccCcccchHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCcchhhHHHHhhCeeeeEEEeeEEeeec
Confidence 4999999999999999999999999999999999999999999985 34678999999999999999999999999998
Q ss_pred cccCC-CCchhHHHHHhhhcCccccccCCCcEEeeehhhhhhhhhHHHHHHHHHHhCCCchhHHHHHHHHHHhhcceeee
Q 027889 82 FYKDK-SGNYFAEVWKEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYF 160 (217)
Q Consensus 82 ~~~~~-~~~~~a~LWkeYa~~DsRY~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qlyG~vlYf 160 (217)
+..+. .+++++|+||||||+|+||...|++++|+|++|+++|||++++++|+++++|++|+++|+.+|++|+||+++||
T Consensus 83 ~~~~~~~s~~L~~~WKeYsk~D~RYv~~d~~vvc~eg~t~~l~g~Lsl~aIya~~k~~~~~~lLq~t~sV~~lyg~~lyF 162 (229)
T KOG4826|consen 83 TNLPANSSALLAQLWKEYSKGDSRYVLTDDVVVCVEGITALLEGPLSLLAIYAILKEKRYRLLLQLTVSVCQLYGCVLYF 162 (229)
T ss_pred ccCCccHHHHHHHHHHHhcccceeEeccCCcEEeeeeehhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 76654 34699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhcCCCC--C-CCchhhhhhhheeCcchhhhhHHHHHHHHHHHHHHHhhhh
Q 027889 161 ITAFLEGNKF--A-CTRYFYYSYFIAQGGTWLLFPALIMIRCWKRICAACLLLD 211 (217)
Q Consensus 161 ~te~~~G~~~--~-~~~~yfW~y~v~~N~~WivvP~~~l~~s~~~i~~a~~~~~ 211 (217)
.||+.+|++| . +|++|+|+|++|+|+.|+++|.++++++|++++.+.+.++
T Consensus 163 l~~~~~~~~~~~~~~N~~Y~~~yliF~NgvWVliP~Lll~~~W~kL~~~~~~~e 216 (229)
T KOG4826|consen 163 LTEILDGFGHGLFTGNPLYFWFYLIFPNGVWVLIPGLLLFDLWKKLALAQSTLE 216 (229)
T ss_pred HHHhcCCCCCCcCCCCceeeeEeEeecCceeeehhHHHHHHHHHHHhhHHHHhh
Confidence 9999999997 3 9999999999999999999999999999999999986654
No 3
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97.
Probab=96.49 E-value=0.0017 Score=53.02 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhhhheeEeceeeeecccccCCCCchhHHHHHhhhc--CccccccCCCcEEeeehhhhhhhhhHHHHHHH
Q 027889 55 DRWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSK--GDSRYASRHVAVLAIEGIAVIFVGPASLLAMY 132 (217)
Q Consensus 55 dr~~~~Wf~~~~~iH~~~EG~F~~~~~~~~~~~~~~~a~LWkeYa~--~DsRY~~~D~~vv~~E~it~~~~GPl~l~~~~ 132 (217)
|.+...||+....+=+.+|..-++-+...+ ++..++=+-|.. .|-=....-.+..++-.++.++--|++++.++
T Consensus 1 D~~~~~~f~~hi~itl~iD~~~~~P~~~~p----~~~~~l~~~yi~~~~D~l~~~~p~wf~~f~~~El~~qlP~~~~~~~ 76 (150)
T PF10914_consen 1 DLFYLIYFLIHIPITLLIDSQPVLPPSLFP----SPLQDLRDWYIATYNDPLMADPPPWFKSFVWIELFFQLPFFFYAIY 76 (150)
T ss_pred CeeHHHHHHHHHHHHHHHhCcccCchhhcc----HHHHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766666665544221111 133344444422 23222223356666778889999999999999
Q ss_pred HHHhC-CCchhHHHHHHHHHHhhcceeeeehhhhcCCCCC-CCchhhhhhhheeCcchhhhhHHHHHHHHHHH
Q 027889 133 AIAKG-KSYSYILQFALSLVQFYGSSLYFITAFLEGNKFA-CTRYFYYSYFIAQGGTWLLFPALIMIRCWKRI 203 (217)
Q Consensus 133 ~i~~~-~~~r~~lqivvs~~qlyG~vlYf~te~~~G~~~~-~~~~yfW~y~v~~N~~WivvP~~~l~~s~~~i 203 (217)
+..++ ++.-..+.++-+..-..+++.-.+.-+..|.... +..--.+-.+...|++++++|.++++++.+++
T Consensus 77 ~l~~~~~~~~~~~~lvYg~~~~~Tt~~cl~~~~~~~~~~~~~~~~~~~~~l~~~Y~Py~liP~~~~~~m~~r~ 149 (150)
T PF10914_consen 77 ALLKGGSPWIRLLLLVYGVHVATTTLPCLGEVLHGGTWPDLSSPQKARWLLLAIYLPYLLIPLLMALDMFRRL 149 (150)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999 6655555555443333333333333333332222 33333455578999999999999999998764
No 4
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=41.16 E-value=1.7e+02 Score=23.54 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHhhhheeEeceeeeecccccCCCCchhHHHHHhhhcCc
Q 027889 23 SEVHAWNGIASFLVMFIIWRISGRSPRKLSKTDRWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYSKGD 102 (217)
Q Consensus 23 ~~il~~~~~~~~~~~~~~~~~s~~~~~~l~~~dr~~~~Wf~~~~~iH~~~EG~F~~~~~~~~~~~~~~~a~LWkeYa~~D 102 (217)
+.+-+..-+.+..++...|...||.+ .+..|-.+..-...+.+ | +...+.+.+..++
T Consensus 5 p~l~a~~~~~s~~ll~~g~~~Ir~~~---~~~Hr~~Ml~a~~ls~l-------F-------------lv~Yl~~~~~~g~ 61 (133)
T PF04238_consen 5 PDLNAVLNAISAVLLLIGWYFIRRGR---IKLHRKLMLTAFVLSAL-------F-------------LVSYLYYHFLGGS 61 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH-------H-------------HHHHHHHHHhcCC
Confidence 34445555566667777777777643 34455555443333322 0 1112222222333
Q ss_pred cccccCCC------cEEeeehhhhhhhhhHHHHHHHHHHhCCCchh
Q 027889 103 SRYASRHV------AVLAIEGIAVIFVGPASLLAMYAIAKGKSYSY 142 (217)
Q Consensus 103 sRY~~~D~------~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~ 142 (217)
.+|+.+|. ++...-.+-+.+..|+.+.+.+.-.+++..||
T Consensus 62 ~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~~~~~H 107 (133)
T PF04238_consen 62 TPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRGRFTRH 107 (133)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 33333321 23333445556678999999998888887776
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.44 E-value=29 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 027889 25 VHAWNGIASFLVMFIIWRISGRS 47 (217)
Q Consensus 25 il~~~~~~~~~~~~~~~~~s~~~ 47 (217)
+++++.+..+++++++...+||.
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR 26 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRR 26 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 6
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.07 E-value=46 Score=26.66 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 027889 25 VHAWNGIASFLVMFIIWRISGRS 47 (217)
Q Consensus 25 il~~~~~~~~~~~~~~~~~s~~~ 47 (217)
|++..+++++.++++.|.+.|+.
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556666665544
No 7
>PF14102 Caps_synth_CapC: Capsule biosynthesis CapC
Probab=29.55 E-value=35 Score=27.06 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhHHHH
Q 027889 5 YSPSDLILPDFTPNLRSTSEVHAWNGIASFLVMFIIWRISGRSPRKLSKTDRWLM 59 (217)
Q Consensus 5 y~P~~~~i~~y~~n~~~~~~il~~~~~~~~~~~~~~~~~s~~~~~~l~~~dr~~~ 59 (217)
+.|-++..|||++-.+..+.=+......+.+.......++|+.. +--.+|++.
T Consensus 16 ~~~gGlivPgylAl~~~~P~~l~~~~~~s~lt~~i~~~l~~~~i--lyGRrrf~~ 68 (121)
T PF14102_consen 16 WSPGGLIVPGYLALYLDQPVRLLVTLLISLLTYLIVRLLSRRTI--LYGRRRFAA 68 (121)
T ss_pred CCCCCEeeHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhhh--cccHHHHHH
Confidence 46888899999998877766666666666666666688887752 445566654
No 8
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=28.57 E-value=89 Score=19.99 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=18.4
Q ss_pred eeCcchhhhhHHHHHHHHHHHHHHHhhh
Q 027889 183 AQGGTWLLFPALIMIRCWKRICAACLLL 210 (217)
Q Consensus 183 ~~N~~WivvP~~~l~~s~~~i~~a~~~~ 210 (217)
..|.+||+||+.-+.----.+.--|...
T Consensus 3 as~LPsI~VPlVGlvfPai~Ma~lf~yI 30 (36)
T CHL00186 3 ASNLPSILVPLVGLVFPAIAMASLFLYI 30 (36)
T ss_pred cccCchhHHhHHHHHHHHHHHHHHHHHh
Confidence 4578999999987765544554444433
No 9
>PRK06287 cobalt transport protein CbiN; Validated
Probab=25.15 E-value=1.5e+02 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 027889 10 LILPDFT-PNLRSTSEVHAWNGIASFLVMFIIWRISG 45 (217)
Q Consensus 10 ~~i~~y~-~n~~~~~~il~~~~~~~~~~~~~~~~~s~ 45 (217)
..+|+|. |..-+.-++++...++ ++++.+++.+.+
T Consensus 64 a~lpDY~i~g~~~~g~ilsgiiGv-~i~l~l~~~~~~ 99 (107)
T PRK06287 64 SPMPDYSIPGMGKIGEIIAMVIGT-LLVLALAYGVGK 99 (107)
T ss_pred CCCCCCCCCCCcchhHHHHHHHHH-HHHHHHHHHHHH
Confidence 4467773 2222355676665543 444455555544
No 10
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=23.39 E-value=1.1e+02 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=18.1
Q ss_pred hheeCcchhhhhHHHHHHHHHHHHHHH
Q 027889 181 FIAQGGTWLLFPALIMIRCWKRICAAC 207 (217)
Q Consensus 181 ~v~~N~~WivvP~~~l~~s~~~i~~a~ 207 (217)
|...|.+||+||+.-+.----.+.-.+
T Consensus 5 ~aas~LPsI~VPlVGlvfPai~Mallf 31 (38)
T PRK11877 5 FAASWLPWIFVPLVGWVFPAVFMVLLG 31 (38)
T ss_pred HhHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 456789999999977665444444433
No 11
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=21.54 E-value=23 Score=23.71 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=5.0
Q ss_pred CCCCCCCC
Q 027889 1 MSHPYSPS 8 (217)
Q Consensus 1 ~~hpy~P~ 8 (217)
|+||.||+
T Consensus 8 ~~HP~Y~~ 15 (45)
T PF03790_consen 8 ASHPLYPR 15 (45)
T ss_pred HcCCCcHH
Confidence 45777764
Done!