Query 027889
Match_columns 217
No_of_seqs 127 out of 264
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2klu_A T-cell surface glycopro 26.2 58 0.002 22.7 3.1 21 17-37 2-22 (70)
2 2zxe_G FXYD10, phospholemman-l 25.8 68 0.0023 22.6 3.5 30 21-50 17-46 (74)
3 1jb0_I Photosystem 1 reaction 23.3 49 0.0017 20.5 2.1 27 181-207 5-31 (38)
4 3vw7_A Proteinase-activated re 17.5 90 0.0031 26.8 3.4 36 176-211 184-219 (484)
5 3w1s_C Ubiquitin-like protein 17.1 90 0.0031 22.5 2.8 26 73-99 49-75 (91)
6 4gdk_A Ubiquitin-like protein 14.0 1.1E+02 0.0039 21.9 2.6 26 73-99 49-75 (91)
7 4dkl_A MU-type opioid receptor 12.8 1.2E+02 0.0042 25.6 3.0 34 177-210 178-211 (464)
8 2jp3_A FXYD domain-containing 12.4 76 0.0026 22.0 1.2 27 22-48 16-42 (67)
9 1eo6_A GATE-16, golgi-associat 12.3 1.3E+02 0.0045 22.4 2.6 28 74-102 75-102 (117)
10 2r2q_A Gamma-aminobutyric acid 12.0 1.4E+02 0.0047 22.0 2.6 28 74-102 74-101 (110)
No 1
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=26.23 E-value=58 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=12.4
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 027889 17 PNLRSTSEVHAWNGIASFLVM 37 (217)
Q Consensus 17 ~n~~~~~~il~~~~~~~~~~~ 37 (217)
|-+.+.+.++...+++.++++
T Consensus 2 ~l~~~~p~~LivlGg~~~lll 22 (70)
T 2klu_A 2 PLVPRGSMALIVLGGVAGLLL 22 (70)
T ss_dssp CSSCCCSSHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHH
Confidence 334555666656666666665
No 2
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.75 E-value=68 Score=22.64 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 027889 21 STSEVHAWNGIASFLVMFIIWRISGRSPRK 50 (217)
Q Consensus 21 ~~~~il~~~~~~~~~~~~~~~~~s~~~~~~ 50 (217)
....+-++.+++++.++.+..++|+|.+-+
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~kcrCk 46 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHheeccchhHHHHHHHHHHHHHcCccccC
Confidence 345677888888888889999999987644
No 3
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=23.32 E-value=49 Score=20.47 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=17.7
Q ss_pred hheeCcchhhhhHHHHHHHHHHHHHHH
Q 027889 181 FIAQGGTWLLFPALIMIRCWKRICAAC 207 (217)
Q Consensus 181 ~v~~N~~WivvP~~~l~~s~~~i~~a~ 207 (217)
|...|.+||+||+.-+.---..+.--|
T Consensus 5 ~aa~~LPsI~VPlVglvfPai~Mallf 31 (38)
T 1jb0_I 5 YAASFLPWIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp STTTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhCChhhHhHHHHHHHHHHHHHHH
Confidence 345688999999977665444444444
No 4
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=17.46 E-value=90 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=28.1
Q ss_pred hhhhhhheeCcchhhhhHHHHHHHHHHHHHHHhhhh
Q 027889 176 FYYSYFIAQGGTWLLFPALIMIRCWKRICAACLLLD 211 (217)
Q Consensus 176 yfW~y~v~~N~~WivvP~~~l~~s~~~i~~a~~~~~ 211 (217)
++-.|+++...+-.++|+.++.-++-.|...++..+
T Consensus 184 ~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~ 219 (484)
T 3vw7_A 184 YYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSA 219 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Confidence 333456666778899999999999999998886544
No 5
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=17.07 E-value=90 Score=22.51 Aligned_cols=26 Identities=12% Similarity=0.445 Sum_probs=20.1
Q ss_pred eceeeeec-ccccCCCCchhHHHHHhhh
Q 027889 73 EGYWFFSP-EFYKDKSGNYFAEVWKEYS 99 (217)
Q Consensus 73 EG~F~~~~-~~~~~~~~~~~a~LWkeYa 99 (217)
|..|+|-. .+.++.+. .+++||++|.
T Consensus 49 ~alFlyVNn~f~Ps~d~-~~~~Ly~~fk 75 (91)
T 3w1s_C 49 DHVYCYINNSFAPSPQQ-NIGELWMQFK 75 (91)
T ss_dssp SCCEEEETTTBCCCTTS-BHHHHHHHHC
T ss_pred ceEEEEECCccCCCccc-HHHHHHHHhC
Confidence 88999854 45666554 8999999997
No 6
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=14.01 E-value=1.1e+02 Score=21.86 Aligned_cols=26 Identities=8% Similarity=0.298 Sum_probs=18.7
Q ss_pred eceeeeecc-cccCCCCchhHHHHHhhh
Q 027889 73 EGYWFFSPE-FYKDKSGNYFAEVWKEYS 99 (217)
Q Consensus 73 EG~F~~~~~-~~~~~~~~~~a~LWkeYa 99 (217)
|..|+|-.. +.++.+. .+++||++|.
T Consensus 49 ~alFlyVnn~~~P~~d~-~~~~Ly~~~k 75 (91)
T 4gdk_A 49 EQLFIYVNQSFAPSPDQ-EVGTLYECFG 75 (91)
T ss_dssp SCCEEEETTTBCCCTTC-BHHHHHHHHC
T ss_pred CeEEEEECCccCCChhh-HHHHHHHHhC
Confidence 567777544 4555454 8999999997
No 7
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=12.77 E-value=1.2e+02 Score=25.61 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=25.5
Q ss_pred hhhhhheeCcchhhhhHHHHHHHHHHHHHHHhhh
Q 027889 177 YYSYFIAQGGTWLLFPALIMIRCWKRICAACLLL 210 (217)
Q Consensus 177 fW~y~v~~N~~WivvP~~~l~~s~~~i~~a~~~~ 210 (217)
...|.++...+..++|+.++.-++..|...++..
T Consensus 178 ~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~ 211 (464)
T 4dkl_A 178 ENLLKICVFIFAFIMPVLIITVCYGLMILRLKSV 211 (464)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666778999999999999998776543
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.41 E-value=76 Score=21.98 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCC
Q 027889 22 TSEVHAWNGIASFLVMFIIWRISGRSP 48 (217)
Q Consensus 22 ~~~il~~~~~~~~~~~~~~~~~s~~~~ 48 (217)
...+-++.+++++.++.+..++|+|.+
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HheecchhhHHHHHHHHHHHHHcCccc
Confidence 456777888888888888899998654
No 9
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=12.29 E-value=1.3e+02 Score=22.41 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=19.8
Q ss_pred ceeeeecccccCCCCchhHHHHHhhhcCc
Q 027889 74 GYWFFSPEFYKDKSGNYFAEVWKEYSKGD 102 (217)
Q Consensus 74 G~F~~~~~~~~~~~~~~~a~LWkeYa~~D 102 (217)
+.|++..+.++..+. .+++|+++|.-.|
T Consensus 75 alfl~vn~~~p~~~~-~m~~LY~~~kd~D 102 (117)
T 1eo6_A 75 AIFLFVDKTVPQSSL-TMGQLYEKEKDED 102 (117)
T ss_dssp CCEEEBTTBCCCTTS-BHHHHHHHHCCTT
T ss_pred cEEEEECCEecCccc-hHHHHHHHhCCCC
Confidence 357776666776655 8999999995433
No 10
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=12.02 E-value=1.4e+02 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=19.8
Q ss_pred ceeeeecccccCCCCchhHHHHHhhhcCc
Q 027889 74 GYWFFSPEFYKDKSGNYFAEVWKEYSKGD 102 (217)
Q Consensus 74 G~F~~~~~~~~~~~~~~~a~LWkeYa~~D 102 (217)
+.|++..+.++..+. .+++|+++|.-.|
T Consensus 74 alfl~vn~~~p~~~~-~m~~LY~~~kd~D 101 (110)
T 2r2q_A 74 ALFFFVNNTIPPTSA-TMGQLYEDNHEED 101 (110)
T ss_dssp CCEEEBTTBCCCTTS-BHHHHHHHHCCTT
T ss_pred cEEEEECCEecCccC-hHHHHHHHcCCCC
Confidence 457776666776655 8999999994433
Done!