Query 027889
Match_columns 217
No_of_seqs 127 out of 264
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 04:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e9xc2 d.344.1.4 (C:1001-1087 10.6 1E+02 0.0073 20.6 3.1 27 1-27 1-27 (87)
2 d1jb0i_ f.23.17.1 (I:) Subunit 7.8 47 0.0034 18.9 0.3 10 186-195 10-19 (38)
3 d5csma_ a.130.1.2 (A:) Alloste 7.2 1.1E+02 0.0083 24.2 2.6 14 3-16 83-96 (256)
4 d1wz3a1 d.15.1.7 (A:10-93) Aut 7.1 1.3E+02 0.0092 19.9 2.4 46 52-99 24-69 (84)
5 d1z3xa2 a.261.1.1 (A:88-235) G 6.2 92 0.0067 22.6 1.4 15 90-106 63-77 (148)
6 d1y6ia2 a.261.1.1 (A:83-233) M 6.1 94 0.0069 22.7 1.4 15 90-106 63-77 (151)
7 d1r4pb_ b.40.2.1 (B:) Verotoxi 6.0 1.5E+02 0.011 18.5 2.2 47 103-166 11-57 (70)
8 d1r44a_ d.65.1.4 (A:) D-Ala-D- 5.8 71 0.0052 24.3 0.5 14 100-113 16-29 (202)
9 d2p7ja1 d.110.6.2 (A:181-273) 4.4 2.2E+02 0.016 18.5 2.3 47 73-119 16-73 (93)
10 d2r6gf2 f.58.1.1 (F:261-504) M 4.1 1.2E+02 0.009 22.4 0.9 31 117-147 29-60 (244)
No 1
>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.59 E-value=1e+02 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHH
Q 027889 1 MSHPYSPSDLILPDFTPNLRSTSEVHA 27 (217)
Q Consensus 1 ~~hpy~P~~~~i~~y~~n~~~~~~il~ 27 (217)
|++.|+|..--.=|=-.|=.|...||+
T Consensus 1 ~~~~y~~~~~g~~~m~~nYydIDDILa 27 (87)
T d2e9xc2 1 MSEAYFRVESGALGPEENFLSLDDILM 27 (87)
T ss_dssp GGTTCCCCCCCTTSSSCCTTCHHHHHH
T ss_pred CCccccccCCccccccccccCHHHHhh
Confidence 678888865444444456677777765
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=7.82 E-value=47 Score=18.91 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=7.8
Q ss_pred cchhhhhHHH
Q 027889 186 GTWLLFPALI 195 (217)
Q Consensus 186 ~~WivvP~~~ 195 (217)
.+||+||...
T Consensus 10 LPwI~iPvv~ 19 (38)
T d1jb0i_ 10 LPWIFIPVVC 19 (38)
T ss_dssp HHHHHHHHHH
T ss_pred cchhHHHHHH
Confidence 5899999753
No 3
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.19 E-value=1.1e+02 Score=24.21 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 027889 3 HPYSPSDLILPDFT 16 (217)
Q Consensus 3 hpy~P~~~~i~~y~ 16 (217)
||++|-++.-|-..
T Consensus 83 ~PFfP~~Lp~pilp 96 (256)
T d5csma_ 83 TPFFPDKIQKSFLP 96 (256)
T ss_dssp CCSCTTTCCCCSSC
T ss_pred CCCCcccccccCCC
Confidence 99999888766443
No 4
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.11 E-value=1.3e+02 Score=19.92 Aligned_cols=46 Identities=7% Similarity=0.287 Sum_probs=27.9
Q ss_pred CchhHHHHHHHHHHhhhheeEeceeeeecccccCCCCchhHHHHHhhh
Q 027889 52 SKTDRWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVWKEYS 99 (217)
Q Consensus 52 ~~~dr~~~~Wf~~~~~iH~~~EG~F~~~~~~~~~~~~~~~a~LWkeYa 99 (217)
+..+++..+=-.+.--++ .|..|+|-...++.+.+.-.+.||+-|+
T Consensus 24 ~~~~~f~~vi~FLrk~Lk--~dsvf~Yin~sFaPspDe~vg~Ly~~f~ 69 (84)
T d1wz3a1 24 SGSDKFANVIDFLRRQLH--SDSLFVYVNSAFSPNPDESVIDLYNNFG 69 (84)
T ss_dssp ETTSBTHHHHHHHHHHHT--CSSCEEEEEEEECCCTTSBHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHhc--CCeEEEEEccccCCChhhHHHHHHHhcC
Confidence 344444443334444444 5889998655454444448999999996
No 5
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.23 E-value=92 Score=22.62 Aligned_cols=15 Identities=20% Similarity=0.632 Sum_probs=11.4
Q ss_pred hhHHHHHhhhcCccccc
Q 027889 90 YFAEVWKEYSKGDSRYA 106 (217)
Q Consensus 90 ~~a~LWkeYa~~DsRY~ 106 (217)
-..|||.+|| |.|++
T Consensus 63 ~ID~LW~~yS--~G~FG 77 (148)
T d1z3xa2 63 TIDQLWLAFS--LGRFG 77 (148)
T ss_dssp HHHHHHHHTT--TTCCS
T ss_pred HHHHHHHHhc--CCccC
Confidence 5679999995 45776
No 6
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=6.10 E-value=94 Score=22.65 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=11.9
Q ss_pred hhHHHHHhhhcCccccc
Q 027889 90 YFAEVWKEYSKGDSRYA 106 (217)
Q Consensus 90 ~~a~LWkeYa~~DsRY~ 106 (217)
-..|||.+|| |.|++
T Consensus 63 ~ID~LW~~yS--~GrFG 77 (151)
T d1y6ia2 63 TINALWWLHS--NGNFG 77 (151)
T ss_dssp HHHHHHHHTT--TTCSS
T ss_pred HHHHHHHHhc--CCccC
Confidence 5679999996 66776
No 7
>d1r4pb_ b.40.2.1 (B:) Verotoxin-1/shiga-toxin, B-pentamer {Shigella dysenteriae, toxin II [TaxId: 622]}
Probab=6.00 E-value=1.5e+02 Score=18.51 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=32.5
Q ss_pred cccccCCCcEEeeehhhhhhhhhHHHHHHHHHHhCCCchhHHHHHHHHHHhhcceeeeehhhhc
Q 027889 103 SRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLE 166 (217)
Q Consensus 103 sRY~~~D~~vv~~E~it~~~~GPl~l~~~~~i~~~~~~r~~lqivvs~~qlyG~vlYf~te~~~ 166 (217)
++|-..|.|.|-+..=+-. ..|+-||-.+-.+||-|.-++.-+.-.+
T Consensus 11 skyneddtftvkvagkeyw-----------------tnrwnlqpllqsaqltgmtvtiks~tc~ 57 (70)
T d1r4pb_ 11 SKYNEDDTFTVKVDGKEYW-----------------TSRWNLQPLLQSAQLTGMTVTIKSSTCE 57 (70)
T ss_dssp EEECTTSCEEEEETTEEEE-----------------ECCTTHHHHHHHHHHHTCEEEEECSCCC
T ss_pred EeecCCceEEEEecCceee-----------------ccccchhhHhhhceecceEEEEEecccc
Confidence 4577778887765222211 2567788888889999999998776555
No 8
>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]}
Probab=5.80 E-value=71 Score=24.31 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.6
Q ss_pred cCccccccCCCcEE
Q 027889 100 KGDSRYASRHVAVL 113 (217)
Q Consensus 100 ~~DsRY~~~D~~vv 113 (217)
+-|-||++.|+|+=
T Consensus 16 ~~DlrYat~~NF~g 29 (202)
T d1r44a_ 16 RWDAKYATWDNFTG 29 (202)
T ss_dssp EECCGGGSSCSTTS
T ss_pred EEEeeeCcCCCcCC
Confidence 36999999999864
No 9
>d2p7ja1 d.110.6.2 (A:181-273) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=4.43 E-value=2.2e+02 Score=18.50 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=31.0
Q ss_pred eceeeeecc------cccC-CCC----chhHHHHHhhhcCccccccCCCcEEeeehhh
Q 027889 73 EGYWFFSPE------FYKD-KSG----NYFAEVWKEYSKGDSRYASRHVAVLAIEGIA 119 (217)
Q Consensus 73 EG~F~~~~~------~~~~-~~~----~~~a~LWkeYa~~DsRY~~~D~~vv~~E~it 119 (217)
|||++..+. +|-+ ..+ .-..++|++-+..++=....|....+-.+|.
T Consensus 16 ~Gy~L~~~~~~~~wgfm~~er~~~tf~~~~P~lW~~I~~~~~Gq~~~~~glftf~tI~ 73 (93)
T d2p7ja1 16 KGFYIASPDESRLYGDIIPERSQFNFSNMYPDIWPRVVSEQAGYSYSGEHLIAFSSIK 73 (93)
T ss_dssp TSBEEECSCGGGBTTTTSTTCTTCBHHHHCTTTHHHHHTTCCEEEECSSEEEEEEEEE
T ss_pred CCcEECCCCcccccccccCccccCChhhhChHHHHHHhcCCCceEEcCCCEEEEEEEE
Confidence 799998752 3322 221 1233899999888877777777777766655
No 10
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=1.2e+02 Score=22.37 Aligned_cols=31 Identities=6% Similarity=0.008 Sum_probs=17.3
Q ss_pred hhhhhhhhhHHHHHHHHHHhCC-CchhHHHHH
Q 027889 117 GIAVIFVGPASLLAMYAIAKGK-SYSYILQFA 147 (217)
Q Consensus 117 ~it~~~~GPl~l~~~~~i~~~~-~~r~~lqiv 147 (217)
.+++++.-++++.+++.+.+++ +.|..++.+
T Consensus 29 ~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~ 60 (244)
T d2r6gf2 29 LITVFLTVAVGMVLACLVQWEALRGKAVYRVL 60 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3445555566666667665544 456555443
Done!