Query 027890
Match_columns 217
No_of_seqs 305 out of 1745
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 5.9E-25 1.3E-29 164.4 11.9 103 99-211 46-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 1.1E-23 2.4E-28 151.6 12.1 101 101-209 5-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 1E-22 2.2E-27 146.4 13.9 102 101-209 1-102 (103)
4 PHA02278 thioredoxin-like prot 99.9 1.2E-22 2.7E-27 145.7 13.0 94 101-205 2-100 (103)
5 cd02948 TRX_NDPK TRX domain, T 99.9 2.7E-22 5.9E-27 143.9 13.9 99 99-208 3-101 (102)
6 cd02954 DIM1 Dim1 family; Dim1 99.9 1.3E-22 2.8E-27 147.2 11.4 84 102-194 1-84 (114)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.2E-22 4.9E-27 146.7 12.0 103 95-206 9-113 (113)
8 PF00085 Thioredoxin: Thioredo 99.9 5.3E-22 1.1E-26 141.4 13.7 99 101-209 4-103 (103)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 3.9E-22 8.5E-27 142.6 11.8 98 96-205 2-100 (101)
10 cd03065 PDI_b_Calsequestrin_N 99.9 6.5E-22 1.4E-26 145.4 12.9 104 96-210 10-119 (120)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.1E-21 2.4E-26 140.8 12.2 99 97-206 3-104 (104)
12 COG3118 Thioredoxin domain-con 99.9 9.2E-22 2E-26 161.8 12.4 108 96-212 24-132 (304)
13 cd02996 PDI_a_ERp44 PDIa famil 99.9 3.1E-21 6.6E-26 139.6 12.6 102 96-206 2-108 (108)
14 cd02956 ybbN ybbN protein fami 99.9 3.2E-21 7E-26 136.4 12.2 95 104-207 1-96 (96)
15 PLN00410 U5 snRNP protein, DIM 99.9 4.2E-21 9E-26 144.4 13.3 108 97-213 5-123 (142)
16 KOG0908 Thioredoxin-like prote 99.9 2.2E-21 4.7E-26 155.1 12.0 109 96-214 2-110 (288)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1E-20 2.2E-25 138.3 13.7 101 94-206 3-112 (113)
18 PRK10996 thioredoxin 2; Provis 99.9 1.6E-20 3.6E-25 142.0 14.8 103 96-210 36-139 (139)
19 PRK09381 trxA thioredoxin; Pro 99.9 1.8E-20 3.8E-25 135.7 14.0 105 95-210 3-108 (109)
20 cd02963 TRX_DnaJ TRX domain, D 99.9 9.4E-21 2E-25 138.0 12.2 102 101-209 9-111 (111)
21 cd02999 PDI_a_ERp44_like PDIa 99.9 7.4E-21 1.6E-25 136.0 10.8 92 104-206 7-100 (100)
22 cd02994 PDI_a_TMX PDIa family, 99.8 1.6E-20 3.4E-25 134.1 12.1 99 96-208 2-101 (101)
23 PTZ00051 thioredoxin; Provisio 99.8 2.7E-20 5.8E-25 132.1 12.8 96 97-204 2-97 (98)
24 cd02984 TRX_PICOT TRX domain, 99.8 3.4E-20 7.4E-25 131.2 12.9 96 102-206 1-96 (97)
25 cd03005 PDI_a_ERp46 PDIa famil 99.8 3E-20 6.4E-25 132.5 12.3 99 98-206 3-102 (102)
26 cd02957 Phd_like Phosducin (Ph 99.8 4.3E-20 9.2E-25 134.9 13.4 90 94-194 3-92 (113)
27 cd03002 PDI_a_MPD1_like PDI fa 99.8 5.2E-20 1.1E-24 133.0 11.7 100 97-207 2-109 (109)
28 PTZ00443 Thioredoxin domain-co 99.8 1.5E-19 3.2E-24 146.5 14.8 109 96-212 31-141 (224)
29 cd02986 DLP Dim1 family, Dim1- 99.8 8E-20 1.7E-24 131.8 11.4 98 103-209 2-110 (114)
30 cd02997 PDI_a_PDIR PDIa family 99.8 1.3E-19 2.9E-24 129.5 12.4 100 97-206 2-104 (104)
31 cd02965 HyaE HyaE family; HyaE 99.8 1.1E-19 2.4E-24 131.0 11.4 91 102-203 16-109 (111)
32 KOG0190 Protein disulfide isom 99.8 3.6E-20 7.8E-25 163.1 10.4 113 94-215 24-137 (493)
33 cd02987 Phd_like_Phd Phosducin 99.8 4.4E-19 9.5E-24 139.1 14.6 106 94-209 61-174 (175)
34 cd03001 PDI_a_P5 PDIa family, 99.8 4.4E-19 9.6E-24 126.6 12.8 99 97-206 2-102 (103)
35 cd02962 TMX2 TMX2 family; comp 99.8 5.9E-19 1.3E-23 134.9 13.9 92 95-195 28-125 (152)
36 cd03000 PDI_a_TMX3 PDIa family 99.8 2.9E-19 6.3E-24 128.4 11.6 98 103-209 6-103 (104)
37 TIGR01068 thioredoxin thioredo 99.8 7.5E-19 1.6E-23 124.5 13.5 99 102-210 2-101 (101)
38 cd02950 TxlA TRX-like protein 99.8 5.3E-19 1.1E-23 134.2 13.1 102 102-212 9-112 (142)
39 TIGR01126 pdi_dom protein disu 99.8 4.8E-19 1.1E-23 125.9 12.0 100 102-210 2-102 (102)
40 cd02953 DsbDgamma DsbD gamma f 99.8 2.8E-19 6.1E-24 128.4 10.3 97 104-207 2-104 (104)
41 cd02993 PDI_a_APS_reductase PD 99.8 1.3E-18 2.8E-23 126.2 12.0 103 96-206 2-109 (109)
42 cd02949 TRX_NTR TRX domain, no 99.8 2.7E-18 5.8E-23 121.9 12.7 92 106-207 5-97 (97)
43 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.9E-18 4E-23 123.5 10.3 101 97-206 2-105 (105)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.6E-18 5.5E-23 122.7 11.0 100 97-206 2-104 (104)
45 cd02992 PDI_a_QSOX PDIa family 99.8 2E-18 4.3E-23 126.3 9.8 90 96-191 2-91 (114)
46 cd02961 PDI_a_family Protein D 99.8 7.2E-18 1.6E-22 118.8 10.8 96 102-206 4-101 (101)
47 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7.4E-18 1.6E-22 122.7 10.8 101 97-209 3-115 (116)
48 PTZ00102 disulphide isomerase; 99.8 1.4E-17 3E-22 149.2 14.4 110 96-214 33-142 (477)
49 cd02951 SoxW SoxW family; SoxW 99.8 1.2E-17 2.5E-22 123.9 11.5 102 104-212 4-121 (125)
50 TIGR01130 ER_PDI_fam protein d 99.8 1.5E-17 3.3E-22 147.9 14.1 109 97-214 3-113 (462)
51 cd02975 PfPDO_like_N Pyrococcu 99.8 2.6E-17 5.5E-22 120.2 12.6 88 116-211 21-111 (113)
52 cd02988 Phd_like_VIAF Phosduci 99.7 3.1E-17 6.8E-22 130.3 13.9 103 93-208 80-190 (192)
53 PTZ00062 glutaredoxin; Provisi 99.7 2.3E-17 4.9E-22 131.7 12.8 94 101-213 4-97 (204)
54 TIGR01295 PedC_BrcD bacterioci 99.7 5.6E-17 1.2E-21 120.0 13.2 101 97-207 8-121 (122)
55 cd02952 TRP14_like Human TRX-r 99.7 4.3E-17 9.3E-22 119.6 10.7 102 100-206 6-118 (119)
56 PLN02309 5'-adenylylsulfate re 99.7 1.5E-16 3.3E-21 140.7 14.2 112 90-209 340-456 (457)
57 cd02947 TRX_family TRX family; 99.7 1.5E-16 3.2E-21 110.0 11.4 90 105-206 2-92 (93)
58 KOG4277 Uncharacterized conser 99.7 2.1E-17 4.5E-22 135.9 7.9 104 104-212 31-134 (468)
59 TIGR00424 APS_reduc 5'-adenyly 99.7 1.7E-16 3.7E-21 140.4 13.8 112 90-209 346-462 (463)
60 PRK00293 dipZ thiol:disulfide 99.7 2E-16 4.4E-21 144.5 13.1 111 96-210 453-570 (571)
61 PTZ00102 disulphide isomerase; 99.7 2.2E-16 4.8E-21 141.4 13.2 112 96-216 358-471 (477)
62 cd02959 ERp19 Endoplasmic reti 99.7 7E-17 1.5E-21 118.6 5.8 99 105-209 7-112 (117)
63 cd02982 PDI_b'_family Protein 99.6 3.7E-15 8E-20 106.4 10.8 86 117-209 12-102 (103)
64 TIGR00411 redox_disulf_1 small 99.6 8.6E-15 1.9E-19 100.1 11.1 81 120-210 2-82 (82)
65 KOG0912 Thiol-disulfide isomer 99.6 1E-15 2.3E-20 125.9 7.4 105 102-214 2-110 (375)
66 KOG0190 Protein disulfide isom 99.6 1.4E-15 2.9E-20 134.3 7.7 104 97-211 368-474 (493)
67 cd02955 SSP411 TRX domain, SSP 99.6 9.1E-15 2E-19 108.2 10.3 80 110-196 8-99 (124)
68 TIGR01130 ER_PDI_fam protein d 99.6 1.7E-14 3.6E-19 128.4 11.3 111 95-215 346-459 (462)
69 TIGR02187 GlrX_arch Glutaredox 99.6 6E-14 1.3E-18 113.5 12.3 89 117-211 19-112 (215)
70 PF13098 Thioredoxin_2: Thiore 99.5 2.2E-14 4.8E-19 103.9 8.2 90 114-206 2-112 (112)
71 PHA02125 thioredoxin-like prot 99.5 8.3E-14 1.8E-18 94.2 9.1 70 121-206 2-73 (75)
72 PRK15412 thiol:disulfide inter 99.5 2.1E-13 4.6E-18 107.9 11.5 89 117-211 68-177 (185)
73 TIGR02187 GlrX_arch Glutaredox 99.5 3.8E-13 8.2E-18 108.9 12.2 82 117-208 133-214 (215)
74 TIGR02738 TrbB type-F conjugat 99.5 2.1E-13 4.7E-18 104.5 10.0 89 117-210 50-153 (153)
75 cd02958 UAS UAS family; UAS is 99.5 7.7E-13 1.7E-17 96.5 12.5 103 104-211 4-112 (114)
76 cd03008 TryX_like_RdCVF Trypar 99.5 3.1E-13 6.8E-18 102.6 10.6 78 117-194 25-129 (146)
77 KOG0191 Thioredoxin/protein di 99.5 1.8E-13 4E-18 119.8 10.7 102 103-214 36-138 (383)
78 TIGR00385 dsbE periplasmic pro 99.5 4.2E-13 9E-18 105.1 11.1 89 117-211 63-172 (173)
79 TIGR02740 TraF-like TraF-like 99.5 8.1E-13 1.8E-17 110.4 13.5 92 116-212 165-266 (271)
80 PRK14018 trifunctional thiored 99.5 4.6E-13 9.9E-18 120.2 12.2 90 117-208 56-171 (521)
81 cd03009 TryX_like_TryX_NRX Try 99.5 4.2E-13 9E-18 100.1 9.4 78 117-194 18-116 (131)
82 PF13905 Thioredoxin_8: Thiore 99.5 1.1E-12 2.3E-17 92.3 10.7 73 117-190 1-95 (95)
83 TIGR00412 redox_disulf_2 small 99.5 1.3E-12 2.7E-17 88.6 10.6 73 121-206 2-75 (76)
84 cd02964 TryX_like_family Trypa 99.4 6.7E-13 1.4E-17 99.3 9.4 78 117-194 17-116 (132)
85 KOG1731 FAD-dependent sulfhydr 99.4 8.8E-14 1.9E-18 123.1 4.6 86 95-186 39-124 (606)
86 PRK03147 thiol-disulfide oxido 99.4 4.1E-12 8.8E-17 98.9 12.4 91 117-209 61-171 (173)
87 cd03010 TlpA_like_DsbE TlpA-li 99.4 2.1E-12 4.4E-17 95.7 10.2 81 117-202 25-126 (127)
88 cd02973 TRX_GRX_like Thioredox 99.4 3E-12 6.6E-17 84.3 8.8 61 121-191 3-63 (67)
89 COG4232 Thiol:disulfide interc 99.4 1.8E-12 3.8E-17 115.9 9.7 107 98-210 457-568 (569)
90 cd02960 AGR Anterior Gradient 99.4 6.9E-13 1.5E-17 98.4 5.2 87 100-194 6-96 (130)
91 PRK11509 hydrogenase-1 operon 99.4 1.7E-11 3.6E-16 91.1 12.6 103 102-214 23-128 (132)
92 PLN02919 haloacid dehalogenase 99.4 5.4E-12 1.2E-16 122.6 12.4 93 117-211 420-537 (1057)
93 KOG0191 Thioredoxin/protein di 99.4 4.7E-12 1E-16 110.9 10.7 108 97-213 146-255 (383)
94 smart00594 UAS UAS domain. 99.4 6.4E-12 1.4E-16 92.9 9.6 100 102-206 12-121 (122)
95 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 2E-11 4.3E-16 85.2 11.3 75 117-202 12-86 (89)
96 PF13899 Thioredoxin_7: Thiore 99.3 2.2E-12 4.8E-17 88.6 6.4 75 104-186 4-81 (82)
97 PRK13728 conjugal transfer pro 99.3 2.8E-11 6.2E-16 94.7 11.8 87 121-212 73-173 (181)
98 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 1.9E-11 4.1E-16 89.8 9.6 84 117-205 20-121 (123)
99 cd03012 TlpA_like_DipZ_like Tl 99.3 3.3E-11 7.2E-16 89.3 10.0 78 117-196 23-124 (126)
100 cd02967 mauD Methylamine utili 99.3 2.4E-11 5.3E-16 88.1 8.9 73 117-193 21-111 (114)
101 cd02966 TlpA_like_family TlpA- 99.3 3.7E-11 8E-16 85.9 9.5 77 117-195 19-115 (116)
102 PLN02399 phospholipid hydroper 99.3 7.6E-11 1.6E-15 96.4 12.2 93 117-211 99-235 (236)
103 PTZ00056 glutathione peroxidas 99.3 6.3E-11 1.4E-15 94.8 11.4 94 117-212 39-180 (199)
104 PF08534 Redoxin: Redoxin; In 99.3 5.5E-11 1.2E-15 90.1 10.5 78 117-196 28-133 (146)
105 TIGR02661 MauD methylamine deh 99.2 1.4E-10 3E-15 92.1 11.7 90 117-209 74-178 (189)
106 TIGR01626 ytfJ_HI0045 conserve 99.2 1.3E-10 2.8E-15 91.4 9.5 85 116-206 58-176 (184)
107 TIGR02540 gpx7 putative glutat 99.1 8.4E-10 1.8E-14 84.5 11.9 92 117-210 22-153 (153)
108 PLN02412 probable glutathione 99.1 9E-10 2E-14 85.7 11.7 94 117-212 29-166 (167)
109 PF02114 Phosducin: Phosducin; 99.1 4.9E-10 1.1E-14 93.1 9.0 106 94-209 124-237 (265)
110 KOG1672 ATP binding protein [P 99.1 3.9E-10 8.4E-15 87.7 7.4 89 94-194 65-153 (211)
111 cd02969 PRX_like1 Peroxiredoxi 99.1 2.8E-09 6.2E-14 83.0 12.4 96 117-214 25-156 (171)
112 cd00340 GSH_Peroxidase Glutath 99.1 1.6E-09 3.5E-14 82.9 10.5 86 117-205 22-151 (152)
113 PF06110 DUF953: Eukaryotic pr 99.1 7.4E-10 1.6E-14 81.0 8.0 104 101-207 3-118 (119)
114 TIGR02196 GlrX_YruB Glutaredox 99.1 1.1E-09 2.4E-14 72.6 8.3 73 121-207 2-74 (74)
115 KOG0914 Thioredoxin-like prote 99.0 2.3E-10 4.9E-15 90.5 5.1 93 94-194 123-221 (265)
116 COG0526 TrxA Thiol-disulfide i 99.0 2.1E-09 4.5E-14 76.3 8.7 85 117-208 32-122 (127)
117 KOG2501 Thioredoxin, nucleored 99.0 2.2E-09 4.9E-14 81.4 7.7 78 117-194 33-132 (157)
118 PF03190 Thioredox_DsbH: Prote 99.0 3.9E-09 8.5E-14 81.1 8.7 81 108-195 28-120 (163)
119 cd02991 UAS_ETEA UAS family, E 98.9 1.7E-08 3.7E-13 73.9 11.3 99 105-211 5-114 (116)
120 KOG0913 Thiol-disulfide isomer 98.9 3.3E-10 7.2E-15 90.5 1.1 104 96-212 25-128 (248)
121 COG2143 Thioredoxin-related pr 98.9 2.4E-08 5.2E-13 75.2 10.3 95 110-207 35-146 (182)
122 PTZ00256 glutathione peroxidas 98.9 3.4E-08 7.4E-13 78.0 11.5 93 117-211 40-182 (183)
123 cd03017 PRX_BCP Peroxiredoxin 98.8 2.2E-08 4.8E-13 75.0 9.0 87 117-205 23-138 (140)
124 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 3E-08 6.4E-13 72.6 8.9 74 117-192 25-123 (124)
125 PF14595 Thioredoxin_9: Thiore 98.8 5.2E-08 1.1E-12 72.6 9.8 81 117-206 41-125 (129)
126 TIGR02200 GlrX_actino Glutared 98.8 3E-08 6.5E-13 66.5 7.8 70 121-207 2-76 (77)
127 cd03015 PRX_Typ2cys Peroxiredo 98.8 7E-08 1.5E-12 75.4 10.5 91 117-209 29-156 (173)
128 PRK00522 tpx lipid hydroperoxi 98.8 8E-08 1.7E-12 74.7 10.5 87 117-207 44-166 (167)
129 TIGR03137 AhpC peroxiredoxin. 98.8 8.5E-08 1.8E-12 76.0 10.7 91 117-209 31-155 (187)
130 PF13728 TraF: F plasmid trans 98.7 2.3E-07 5E-12 75.1 12.5 94 106-206 111-214 (215)
131 KOG0911 Glutaredoxin-related p 98.7 9.6E-09 2.1E-13 81.8 4.3 103 96-212 2-104 (227)
132 cd01659 TRX_superfamily Thiore 98.7 6E-08 1.3E-12 61.1 7.2 60 121-188 1-63 (69)
133 cd03014 PRX_Atyp2cys Peroxired 98.7 1.3E-07 2.9E-12 71.2 9.0 74 117-194 26-126 (143)
134 PRK10382 alkyl hydroperoxide r 98.7 3.6E-07 7.7E-12 72.4 11.4 91 117-209 31-155 (187)
135 PRK11200 grxA glutaredoxin 1; 98.7 2.9E-07 6.2E-12 63.4 9.6 81 120-211 2-84 (85)
136 PF11009 DUF2847: Protein of u 98.7 7.3E-07 1.6E-11 63.6 11.7 101 98-203 2-105 (105)
137 cd03018 PRX_AhpE_like Peroxire 98.7 2.6E-07 5.7E-12 69.9 10.0 88 118-207 29-148 (149)
138 KOG3425 Uncharacterized conser 98.7 1E-07 2.2E-12 68.6 6.9 83 101-187 10-104 (128)
139 PRK10606 btuE putative glutath 98.6 2.6E-07 5.7E-12 72.9 9.9 42 117-161 25-66 (183)
140 cd02970 PRX_like2 Peroxiredoxi 98.6 2.7E-07 5.9E-12 69.6 9.5 76 117-194 24-146 (149)
141 PRK09437 bcp thioredoxin-depen 98.6 3.7E-07 7.9E-12 69.8 9.8 78 117-196 30-138 (154)
142 PRK15000 peroxidase; Provision 98.6 4.6E-07 9.9E-12 72.6 10.6 91 117-209 34-161 (200)
143 PRK13190 putative peroxiredoxi 98.6 4.4E-07 9.6E-12 72.8 10.5 92 117-210 27-154 (202)
144 TIGR02180 GRX_euk Glutaredoxin 98.6 3.1E-07 6.7E-12 62.6 8.0 75 121-207 1-76 (84)
145 PF13192 Thioredoxin_3: Thiore 98.6 1.1E-06 2.3E-11 59.4 10.5 73 122-207 3-76 (76)
146 TIGR02739 TraF type-F conjugat 98.6 2E-06 4.4E-11 71.1 13.1 101 107-212 142-250 (256)
147 PF01216 Calsequestrin: Calseq 98.6 1.7E-06 3.7E-11 73.2 12.7 109 95-213 34-147 (383)
148 KOG3414 Component of the U4/U6 98.5 1.2E-06 2.6E-11 63.7 9.8 103 99-210 7-120 (142)
149 cd02968 SCO SCO (an acronym fo 98.5 7.7E-07 1.7E-11 66.7 8.1 44 117-160 22-67 (142)
150 cd02971 PRX_family Peroxiredox 98.5 1.1E-06 2.4E-11 65.6 8.7 78 117-196 22-128 (140)
151 PRK13599 putative peroxiredoxi 98.4 2E-06 4.3E-11 69.7 10.1 91 117-209 28-155 (215)
152 PRK13703 conjugal pilus assemb 98.4 3.8E-06 8.2E-11 69.1 11.7 102 107-213 135-244 (248)
153 PTZ00137 2-Cys peroxiredoxin; 98.4 3.2E-06 7E-11 70.2 11.3 91 117-209 98-224 (261)
154 cd02976 NrdH NrdH-redoxin (Nrd 98.4 1.8E-06 4E-11 56.7 8.0 72 121-206 2-73 (73)
155 TIGR02183 GRXA Glutaredoxin, G 98.4 2.4E-06 5.2E-11 59.0 8.5 80 121-211 2-83 (86)
156 PRK13191 putative peroxiredoxi 98.4 3.3E-06 7.1E-11 68.4 10.3 91 117-209 33-160 (215)
157 cd03016 PRX_1cys Peroxiredoxin 98.4 3.6E-06 7.9E-11 67.5 10.3 90 118-209 26-153 (203)
158 PRK10877 protein disulfide iso 98.4 4.1E-06 8.8E-11 68.6 10.8 85 116-209 106-230 (232)
159 PRK13189 peroxiredoxin; Provis 98.4 3.7E-06 8.1E-11 68.4 10.4 91 117-209 35-162 (222)
160 PTZ00253 tryparedoxin peroxida 98.3 1.3E-05 2.9E-10 64.0 11.1 91 117-209 36-163 (199)
161 PF00462 Glutaredoxin: Glutare 98.3 7.2E-06 1.6E-10 52.5 7.7 60 121-191 1-60 (60)
162 PF13848 Thioredoxin_6: Thiore 98.3 2.9E-05 6.4E-10 60.4 12.5 101 96-208 78-184 (184)
163 KOG3171 Conserved phosducin-li 98.2 4.7E-06 1E-10 66.1 7.5 107 93-209 136-250 (273)
164 TIGR03143 AhpF_homolog putativ 98.2 1.8E-05 3.9E-10 72.8 11.9 79 117-206 475-554 (555)
165 PF02966 DIM1: Mitosis protein 98.2 5E-05 1.1E-09 56.0 11.3 102 98-209 3-116 (133)
166 cd03419 GRX_GRXh_1_2_like Glut 98.2 1.7E-05 3.8E-10 53.7 8.3 63 121-192 2-65 (82)
167 TIGR02190 GlrX-dom Glutaredoxi 98.2 2.1E-05 4.6E-10 53.3 8.7 73 117-206 6-78 (79)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 2.5E-05 5.4E-10 62.2 9.5 82 117-206 77-197 (197)
169 PRK10329 glutaredoxin-like pro 98.1 6.2E-05 1.3E-09 51.4 9.6 77 121-212 3-79 (81)
170 cd02981 PDI_b_family Protein D 98.0 8.4E-05 1.8E-09 52.0 10.0 93 98-208 2-96 (97)
171 PF07449 HyaE: Hydrogenase-1 e 98.0 6.2E-05 1.3E-09 54.0 9.2 91 97-200 11-105 (107)
172 PRK15317 alkyl hydroperoxide r 98.0 7E-05 1.5E-09 68.3 11.6 83 117-210 116-198 (517)
173 cd03023 DsbA_Com1_like DsbA fa 98.0 0.0001 2.2E-09 55.5 10.4 32 117-148 5-36 (154)
174 cd02066 GRX_family Glutaredoxi 98.0 5.4E-05 1.2E-09 49.2 7.7 61 121-192 2-62 (72)
175 TIGR02194 GlrX_NrdH Glutaredox 97.9 4.4E-05 9.5E-10 50.7 6.8 70 122-205 2-71 (72)
176 PF13462 Thioredoxin_4: Thiore 97.9 0.00022 4.8E-09 54.4 11.7 85 117-208 12-162 (162)
177 PRK11657 dsbG disulfide isomer 97.9 0.00021 4.5E-09 59.3 11.2 87 116-207 116-249 (251)
178 cd02983 P5_C P5 family, C-term 97.9 0.00048 1E-08 51.3 11.8 107 96-213 3-118 (130)
179 cd03029 GRX_hybridPRX5 Glutare 97.8 0.00027 5.8E-09 46.8 9.0 69 121-206 3-71 (72)
180 TIGR03140 AhpF alkyl hydropero 97.8 0.00035 7.5E-09 63.7 11.9 82 117-209 117-198 (515)
181 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00045 9.8E-09 50.0 9.5 97 102-211 5-109 (111)
182 cd03019 DsbA_DsbA DsbA family, 97.7 0.00035 7.5E-09 54.2 9.2 32 117-148 15-46 (178)
183 TIGR00365 monothiol glutaredox 97.7 0.00038 8.3E-09 49.1 8.5 73 104-192 3-79 (97)
184 PHA03050 glutaredoxin; Provisi 97.7 0.00028 6.1E-09 50.9 7.9 67 121-193 15-82 (108)
185 cd03028 GRX_PICOT_like Glutare 97.7 0.00045 9.8E-09 48.0 8.5 65 117-192 7-75 (90)
186 cd03027 GRX_DEP Glutaredoxin ( 97.7 0.0003 6.5E-09 46.7 7.3 61 121-192 3-63 (73)
187 cd03418 GRX_GRXb_1_3_like Glut 97.6 0.00036 7.8E-09 46.3 7.4 61 121-192 2-63 (75)
188 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00024 5.2E-09 47.8 6.3 61 121-192 1-61 (79)
189 PF07912 ERp29_N: ERp29, N-ter 97.6 0.0031 6.6E-08 46.1 12.2 107 97-211 6-120 (126)
190 KOG3170 Conserved phosducin-li 97.6 0.00061 1.3E-08 53.7 9.1 104 93-209 89-200 (240)
191 TIGR02189 GlrX-like_plant Glut 97.6 0.00011 2.5E-09 52.0 4.6 60 121-192 10-73 (99)
192 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.0016 3.5E-08 47.1 10.0 95 102-209 5-110 (111)
193 PRK10954 periplasmic protein d 97.5 0.0012 2.6E-08 53.0 9.7 39 117-158 37-78 (207)
194 KOG2603 Oligosaccharyltransfer 97.4 0.00083 1.8E-08 56.4 8.5 109 96-210 41-166 (331)
195 cd02972 DsbA_family DsbA famil 97.4 0.0011 2.3E-08 45.5 7.8 63 121-186 1-91 (98)
196 PRK10638 glutaredoxin 3; Provi 97.4 0.00088 1.9E-08 45.6 7.2 61 121-192 4-64 (83)
197 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0028 6E-08 44.6 9.2 101 97-207 3-109 (112)
198 COG1331 Highly conserved prote 97.4 0.00047 1E-08 63.6 6.9 82 102-194 32-125 (667)
199 PF05768 DUF836: Glutaredoxin- 97.2 0.0028 6E-08 43.1 8.0 77 121-207 2-81 (81)
200 PF00837 T4_deiodinase: Iodoth 97.2 0.0029 6.2E-08 51.6 9.2 112 89-209 76-236 (237)
201 TIGR03143 AhpF_homolog putativ 97.2 0.0066 1.4E-07 56.0 12.2 97 103-209 354-453 (555)
202 PRK10824 glutaredoxin-4; Provi 97.1 0.0031 6.7E-08 45.9 7.2 74 104-193 6-83 (115)
203 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.014 3E-07 44.8 10.6 93 116-210 29-156 (157)
204 cd03069 PDI_b_ERp57 PDIb famil 96.9 0.017 3.6E-07 41.1 10.1 94 97-209 2-103 (104)
205 COG0695 GrxC Glutaredoxin and 96.9 0.0041 8.9E-08 42.2 6.4 70 121-203 3-74 (80)
206 cd03066 PDI_b_Calsequestrin_mi 96.9 0.026 5.7E-07 39.9 10.8 95 97-209 2-100 (102)
207 PF13848 Thioredoxin_6: Thiore 96.5 0.036 7.8E-07 42.8 10.1 68 135-213 8-78 (184)
208 PTZ00062 glutaredoxin; Provisi 96.5 0.021 4.5E-07 45.9 8.3 64 118-192 113-180 (204)
209 PRK12759 bifunctional gluaredo 96.0 0.022 4.7E-07 50.6 6.9 60 121-192 4-72 (410)
210 cd02990 UAS_FAF1 UAS family, F 95.9 0.52 1.1E-05 35.3 12.9 103 105-210 5-133 (136)
211 cd03068 PDI_b_ERp72 PDIb famil 95.7 0.44 9.6E-06 34.0 11.5 95 97-209 2-107 (107)
212 KOG1752 Glutaredoxin and relat 95.4 0.089 1.9E-06 37.6 6.9 74 104-192 5-79 (104)
213 PF13743 Thioredoxin_5: Thiore 95.2 0.13 2.8E-06 40.3 7.8 26 123-148 2-27 (176)
214 cd03041 GST_N_2GST_N GST_N fam 94.6 0.47 1E-05 31.4 8.5 74 122-209 3-76 (77)
215 cd03031 GRX_GRX_like Glutaredo 94.6 0.13 2.9E-06 39.0 6.3 61 121-192 2-72 (147)
216 KOG2507 Ubiquitin regulatory p 94.6 0.46 9.9E-06 41.9 10.1 101 105-210 7-111 (506)
217 cd02977 ArsC_family Arsenate R 94.6 0.032 7E-07 39.6 2.7 79 122-209 2-86 (105)
218 KOG2640 Thioredoxin [Function 94.5 0.013 2.7E-07 49.4 0.6 88 117-211 76-163 (319)
219 cd03013 PRX5_like Peroxiredoxi 94.5 0.11 2.5E-06 39.6 5.8 75 118-194 31-137 (155)
220 cd03040 GST_N_mPGES2 GST_N fam 94.3 0.39 8.4E-06 31.6 7.5 74 121-211 2-77 (77)
221 cd03036 ArsC_like Arsenate Red 93.0 0.075 1.6E-06 38.3 2.2 79 122-209 2-87 (111)
222 PF06491 Disulph_isomer: Disul 92.8 3.1 6.6E-05 30.9 12.2 107 96-210 17-132 (136)
223 cd03037 GST_N_GRX2 GST_N famil 92.6 0.59 1.3E-05 30.2 6.0 68 123-207 3-70 (71)
224 COG1651 DsbG Protein-disulfide 92.1 2 4.3E-05 35.0 9.9 40 166-210 203-243 (244)
225 PHA03075 glutaredoxin-like pro 92.0 0.68 1.5E-05 33.5 6.0 36 118-160 2-37 (123)
226 cd02978 KaiB_like KaiB-like fa 91.8 0.89 1.9E-05 30.2 6.0 59 120-184 3-61 (72)
227 KOG2792 Putative cytochrome C 91.7 1.3 2.8E-05 36.7 8.1 96 117-212 139-277 (280)
228 PF09673 TrbC_Ftype: Type-F co 91.5 2.7 5.9E-05 30.3 8.9 72 102-187 9-80 (113)
229 cd02974 AhpF_NTD_N Alkyl hydro 91.1 3.9 8.4E-05 28.5 10.9 83 103-207 7-91 (94)
230 TIGR01617 arsC_related transcr 90.6 0.62 1.3E-05 33.7 4.8 76 122-209 2-87 (117)
231 cd03060 GST_N_Omega_like GST_N 90.4 0.94 2E-05 29.3 5.2 60 122-192 2-61 (71)
232 TIGR02742 TrbC_Ftype type-F co 90.3 4.4 9.5E-05 30.1 9.2 72 103-189 11-82 (130)
233 COG4545 Glutaredoxin-related p 90.0 0.86 1.9E-05 30.4 4.5 61 122-192 5-77 (85)
234 cd03045 GST_N_Delta_Epsilon GS 89.7 2.8 6.1E-05 27.0 7.2 61 122-191 2-62 (74)
235 COG0386 BtuE Glutathione perox 89.6 6.4 0.00014 30.1 9.6 93 116-211 24-161 (162)
236 COG0450 AhpC Peroxiredoxin [Po 89.2 4.7 0.0001 32.0 9.0 93 117-209 33-160 (194)
237 PF13417 GST_N_3: Glutathione 88.9 4.7 0.0001 26.3 10.9 72 124-212 2-73 (75)
238 cd03059 GST_N_SspA GST_N famil 88.8 4.5 9.7E-05 25.9 7.7 70 122-208 2-71 (73)
239 cd03051 GST_N_GTT2_like GST_N 88.4 1.5 3.3E-05 28.0 5.1 62 122-191 2-63 (74)
240 cd03032 ArsC_Spx Arsenate Redu 88.2 0.44 9.6E-06 34.4 2.6 22 121-142 2-23 (115)
241 PRK01655 spxA transcriptional 88.2 0.29 6.3E-06 36.4 1.6 22 121-142 2-23 (131)
242 PF01323 DSBA: DSBA-like thior 88.1 1.2 2.7E-05 34.4 5.3 39 166-207 155-193 (193)
243 PF02630 SCO1-SenC: SCO1/SenC; 87.6 2.5 5.4E-05 32.8 6.6 44 117-160 52-96 (174)
244 TIGR03140 AhpF alkyl hydropero 87.3 9.4 0.0002 34.9 11.2 86 103-209 7-94 (515)
245 PRK15317 alkyl hydroperoxide r 87.3 9.2 0.0002 34.9 11.2 85 103-209 7-93 (517)
246 PRK12559 transcriptional regul 87.1 0.56 1.2E-05 34.9 2.6 22 121-142 2-23 (131)
247 PRK09301 circadian clock prote 86.5 3 6.4E-05 29.7 5.8 82 117-205 5-88 (103)
248 TIGR02654 circ_KaiB circadian 86.2 3.4 7.3E-05 28.5 5.8 70 118-194 3-72 (87)
249 COG2761 FrnE Predicted dithiol 86.1 2.3 5E-05 34.6 5.8 44 168-214 174-217 (225)
250 PF06053 DUF929: Domain of unk 84.4 4.5 9.7E-05 33.5 6.8 33 116-148 57-89 (249)
251 cd00570 GST_N_family Glutathio 83.9 3.3 7.1E-05 25.5 4.8 59 123-192 3-61 (71)
252 COG1999 Uncharacterized protei 83.3 11 0.00024 30.2 8.6 57 117-176 67-127 (207)
253 cd03052 GST_N_GDAP1 GST_N fami 83.2 9.8 0.00021 24.7 7.0 62 122-192 2-63 (73)
254 cd03035 ArsC_Yffb Arsenate Red 81.0 1.6 3.5E-05 31.0 2.7 74 122-209 2-84 (105)
255 COG3019 Predicted metal-bindin 81.0 5 0.00011 30.1 5.3 77 118-209 25-103 (149)
256 PRK13344 spxA transcriptional 79.6 1.8 4E-05 32.1 2.7 22 121-142 2-23 (132)
257 COG3531 Predicted protein-disu 79.2 4.5 9.8E-05 32.2 4.8 43 168-210 164-209 (212)
258 cd03024 DsbA_FrnE DsbA family, 78.6 4.5 9.8E-05 31.6 4.9 39 165-206 162-200 (201)
259 cd03056 GST_N_4 GST_N family, 78.0 15 0.00032 23.2 7.5 61 123-192 3-63 (73)
260 PF08806 Sep15_SelM: Sep15/Sel 77.9 2.9 6.2E-05 28.2 3.0 33 178-210 41-76 (78)
261 cd03022 DsbA_HCCA_Iso DsbA fam 74.0 7.1 0.00015 30.1 4.8 37 166-206 155-191 (192)
262 PF07689 KaiB: KaiB domain; I 72.3 1.4 3.1E-05 30.0 0.4 54 124-183 3-56 (82)
263 cd03055 GST_N_Omega GST_N fami 69.2 14 0.00031 24.9 4.9 60 121-191 19-78 (89)
264 PF09822 ABC_transp_aux: ABC-t 68.0 68 0.0015 26.5 11.1 70 107-179 17-89 (271)
265 KOG0912 Thiol-disulfide isomer 67.4 16 0.00035 31.3 5.6 100 95-210 210-319 (375)
266 COG0278 Glutaredoxin-related p 66.4 35 0.00077 24.2 6.3 74 104-193 6-84 (105)
267 PF04592 SelP_N: Selenoprotein 66.0 19 0.00041 29.5 5.6 45 117-161 26-71 (238)
268 KOG2244 Highly conserved prote 66.0 3.2 7E-05 38.1 1.3 74 102-186 101-185 (786)
269 cd03074 PDI_b'_Calsequestrin_C 65.3 49 0.0011 23.9 10.7 101 102-209 7-119 (120)
270 PF01323 DSBA: DSBA-like thior 64.1 14 0.00029 28.5 4.5 38 121-160 2-39 (193)
271 PF00255 GSHPx: Glutathione pe 63.7 27 0.00058 25.0 5.5 43 116-161 20-62 (108)
272 PF06764 DUF1223: Protein of u 62.5 69 0.0015 25.6 8.3 83 123-212 4-100 (202)
273 cd03053 GST_N_Phi GST_N family 62.1 39 0.00083 21.6 7.9 73 121-207 2-74 (76)
274 KOG1651 Glutathione peroxidase 61.2 34 0.00075 26.5 6.0 43 116-160 33-75 (171)
275 cd03025 DsbA_FrnE_like DsbA fa 60.2 13 0.00029 28.6 3.8 27 121-147 3-29 (193)
276 PF13778 DUF4174: Domain of un 59.9 63 0.0014 23.3 8.7 88 120-209 12-111 (118)
277 KOG0852 Alkyl hydroperoxide re 59.9 84 0.0018 24.8 8.4 93 116-208 32-159 (196)
278 cd03025 DsbA_FrnE_like DsbA fa 58.6 12 0.00026 28.9 3.3 24 166-189 157-180 (193)
279 COG3634 AhpF Alkyl hydroperoxi 58.3 78 0.0017 28.0 8.2 92 103-207 104-195 (520)
280 KOG4277 Uncharacterized conser 54.5 1.3E+02 0.0027 26.0 8.7 77 117-209 153-230 (468)
281 PRK00366 ispG 4-hydroxy-3-meth 54.4 46 0.00099 29.1 6.3 80 129-209 274-356 (360)
282 PF04908 SH3BGR: SH3-binding, 51.6 39 0.00083 23.8 4.6 70 122-194 3-80 (99)
283 PF04134 DUF393: Protein of un 51.3 29 0.00062 24.4 4.0 57 124-189 2-61 (114)
284 TIGR00014 arsC arsenate reduct 49.9 14 0.0003 26.6 2.1 76 122-209 2-86 (114)
285 cd03061 GST_N_CLIC GST_N famil 49.2 85 0.0019 21.6 7.7 70 126-212 19-88 (91)
286 COG5429 Uncharacterized secret 49.1 69 0.0015 26.4 6.1 86 118-210 42-141 (261)
287 cd03033 ArsC_15kD Arsenate Red 48.4 24 0.00052 25.3 3.2 22 121-142 2-23 (113)
288 PRK13730 conjugal transfer pil 46.2 46 0.00099 26.8 4.7 22 166-187 150-171 (212)
289 COG1999 Uncharacterized protei 46.1 1.5E+02 0.0033 23.6 9.1 56 152-211 133-205 (207)
290 COG0821 gcpE 1-hydroxy-2-methy 45.6 83 0.0018 27.3 6.4 90 118-210 255-351 (361)
291 PRK10026 arsenate reductase; P 44.8 23 0.00049 26.7 2.7 22 121-142 4-25 (141)
292 PRK09481 sspA stringent starva 42.2 1.7E+02 0.0036 22.9 7.8 77 117-210 7-83 (211)
293 PRK10387 glutaredoxin 2; Provi 42.2 1.6E+02 0.0035 22.8 7.5 70 124-210 4-73 (210)
294 PF06953 ArsD: Arsenical resis 41.8 1.4E+02 0.003 21.9 8.0 58 152-211 40-103 (123)
295 cd03058 GST_N_Tau GST_N family 41.1 92 0.002 19.7 7.1 69 123-208 3-72 (74)
296 PF11287 DUF3088: Protein of u 40.2 40 0.00086 24.3 3.2 77 128-211 23-108 (112)
297 TIGR02743 TraW type-F conjugat 40.1 56 0.0012 26.2 4.4 40 139-191 158-197 (202)
298 COG1393 ArsC Arsenate reductas 37.3 43 0.00093 24.3 3.1 24 121-144 3-26 (117)
299 smart00053 DYNc Dynamin, GTPas 36.9 2.4E+02 0.0051 23.2 10.3 86 101-186 87-200 (240)
300 PF13409 GST_N_2: Glutathione 35.8 1.2E+02 0.0025 19.2 6.5 69 128-208 1-69 (70)
301 cd03038 GST_N_etherase_LigE GS 35.7 1.1E+02 0.0025 19.9 4.9 69 126-209 13-82 (84)
302 COG3011 Predicted thiol-disulf 35.3 1.9E+02 0.0042 21.7 6.9 68 116-192 5-74 (137)
303 TIGR00612 ispG_gcpE 1-hydroxy- 34.8 1.8E+02 0.0039 25.4 6.8 80 125-208 261-343 (346)
304 COG3411 Ferredoxin [Energy pro 34.6 90 0.002 20.1 3.8 30 179-211 17-46 (64)
305 KOG1364 Predicted ubiquitin re 34.5 60 0.0013 28.2 3.9 50 165-214 141-193 (356)
306 TIGR02182 GRXB Glutaredoxin, G 33.7 2.3E+02 0.0051 22.2 7.2 69 124-209 3-71 (209)
307 cd03030 GRX_SH3BGR Glutaredoxi 33.5 1.6E+02 0.0035 20.2 5.6 39 152-192 30-72 (92)
308 cd03034 ArsC_ArsC Arsenate Red 32.1 49 0.0011 23.5 2.7 21 122-142 2-22 (112)
309 cd03050 GST_N_Theta GST_N fami 30.5 1.5E+02 0.0032 18.8 8.1 72 123-208 3-74 (76)
310 PRK13738 conjugal transfer pil 29.3 73 0.0016 25.7 3.5 41 139-191 156-197 (209)
311 PF02401 LYTB: LytB protein; 28.8 1E+02 0.0023 26.0 4.5 101 102-210 166-278 (281)
312 cd03375 TPP_OGFOR Thiamine pyr 28.2 1E+02 0.0022 24.1 4.2 29 99-127 156-184 (193)
313 cd03054 GST_N_Metaxin GST_N fa 27.7 1.6E+02 0.0035 18.4 6.2 59 126-208 13-71 (72)
314 cd03049 GST_N_3 GST_N family, 27.4 1.6E+02 0.0035 18.4 6.2 60 123-191 3-62 (73)
315 KOG1422 Intracellular Cl- chan 25.9 3.6E+02 0.0078 21.9 7.8 69 128-213 20-88 (221)
316 cd03021 DsbA_GSTK DsbA family, 25.4 1.4E+02 0.003 23.5 4.5 40 167-206 168-208 (209)
317 COG4604 CeuD ABC-type enteroch 24.8 3.8E+02 0.0082 21.9 6.7 50 130-194 169-218 (252)
318 PRK10853 putative reductase; P 23.9 91 0.002 22.5 2.9 22 121-142 2-23 (118)
319 cd00862 ProRS_anticodon_zinc P 23.7 75 0.0016 25.2 2.6 26 97-130 128-153 (202)
320 KOG0075 GTP-binding ADP-ribosy 22.5 3E+02 0.0066 21.2 5.4 47 134-185 77-129 (186)
321 PF02775 TPP_enzyme_C: Thiamin 22.4 1.6E+02 0.0034 21.8 4.1 28 97-124 124-153 (153)
322 PRK01045 ispH 4-hydroxy-3-meth 21.8 3.8E+02 0.0082 22.9 6.6 101 102-210 167-279 (298)
323 TIGR01616 nitro_assoc nitrogen 21.4 1.2E+02 0.0027 22.1 3.2 22 121-142 3-24 (126)
324 COG5494 Predicted thioredoxin/ 20.3 4.3E+02 0.0093 21.6 6.1 73 123-209 15-87 (265)
325 cd03376 TPP_PFOR_porB_like Thi 20.0 1.7E+02 0.0037 23.8 4.1 29 99-127 172-200 (235)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.9e-25 Score=164.39 Aligned_cols=103 Identities=30% Similarity=0.473 Sum_probs=96.2
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027890 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~ 178 (217)
.+.+..+|++.+.++ +.||+|+|||+||+||+.+.|.++++..+|.+ .+.+++||+ |++.+++.+|+|.+
T Consensus 46 ~~~s~~~~~~~Vi~S---~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdt----D~~~ela~~Y~I~a 115 (150)
T KOG0910|consen 46 NVQSDSEFDDKVINS---DVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDT----DEHPELAEDYEISA 115 (150)
T ss_pred cccCHHHHHHHHHcc---CCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEcc----ccccchHhhcceee
Confidence 345899999999885 89999999999999999999999999999988 799999999 99999999999999
Q ss_pred CcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 179 VPLFHFYKNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 ~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
+||+++|+||+.+.++ |..+.+.|.++|++++.
T Consensus 116 vPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 116 VPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999998 66899999999999874
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=151.56 Aligned_cols=101 Identities=40% Similarity=0.642 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+.++++.....+...+++++|+|||+|||||+.+.|.+.+++.+|++ +.|++||+ |+..+++++++|..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdv----de~~~~~~~~~V~~~P 76 (106)
T KOG0907|consen 5 ETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDV----DELEEVAKEFNVKAMP 76 (106)
T ss_pred EehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEec----ccCHhHHHhcCceEee
Confidence 345566666666555679999999999999999999999999999987 99999999 6699999999999999
Q ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027890 181 LFHFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~~~G~~v~~~~~~~~~~l~~~l~~~ 209 (217)
||+||++|+.+.++.|.+.++|++.|.++
T Consensus 77 Tf~f~k~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 77 TFVFYKGGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred EEEEEECCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999999998999999888764
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=1e-22 Score=146.40 Aligned_cols=102 Identities=29% Similarity=0.408 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
+|.++|++.+..+ .++++||+|||+||++|+.+.|.|+++++++. ++.|++||+.+ .+...+++++|+|.++|
T Consensus 1 ~~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~-~~~~~~l~~~~~V~~~P 73 (103)
T cd02985 1 HSVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDE-NDSTMELCRREKIIEVP 73 (103)
T ss_pred CCHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCC-ChHHHHHHHHcCCCcCC
Confidence 3689999999874 38999999999999999999999999999984 48999999822 12335899999999999
Q ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027890 181 LFHFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~~~G~~v~~~~~~~~~~l~~~l~~~ 209 (217)
|++||++|+.+.++.|.++++|.+.+..+
T Consensus 74 t~~~~~~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 74 HFLFYKDGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred EEEEEeCCeEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999999889999999888753
No 4
>PHA02278 thioredoxin-like protein
Probab=99.90 E-value=1.2e-22 Score=145.73 Aligned_cols=94 Identities=16% Similarity=0.319 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchh----HHHHHHcCC
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQ----SEVAERLKI 176 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~----~~l~~~~~I 176 (217)
.+.++|.+.+.+ +++++|+|||+||++|+.+.|.++++++++.. .+.|+++|+ +.+ .+++++|+|
T Consensus 2 ~~~~~~~~~i~~----~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdv----d~~~~d~~~l~~~~~I 70 (103)
T PHA02278 2 NSLVDLNTAIRQ----KKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNL----DAEDVDREKAVKLFDI 70 (103)
T ss_pred CCHHHHHHHHhC----CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEEC----CccccccHHHHHHCCC
Confidence 467899999964 89999999999999999999999999987554 477899999 543 689999999
Q ss_pred CCCcEEEEEECCEEEEEe-CCCCHHHHHHH
Q 027890 177 KTVPLFHFYKNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 177 ~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~ 205 (217)
.++||+++|++|+.+.++ |..+.+.|.++
T Consensus 71 ~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 71 MSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 999999999999999999 44788887765
No 5
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.89 E-value=2.7e-22 Score=143.87 Aligned_cols=99 Identities=30% Similarity=0.518 Sum_probs=89.7
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027890 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~ 178 (217)
++.|.++|++++.. +++++|+|||+||++|+.+.|.++++++.+.+ ..+.|+.+|+ | ..+++++|+|.+
T Consensus 3 ~i~~~~~~~~~i~~----~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~----d-~~~~~~~~~v~~ 71 (102)
T cd02948 3 EINNQEEWEELLSN----KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEA----D-TIDTLKRYRGKC 71 (102)
T ss_pred EccCHHHHHHHHcc----CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeC----C-CHHHHHHcCCCc
Confidence 46789999999865 89999999999999999999999999998863 2488999999 7 678999999999
Q ss_pred CcEEEEEECCEEEEEeCCCCHHHHHHHHHH
Q 027890 179 VPLFHFYKNGALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 179 ~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~ 208 (217)
+||+++|++|+.+.+..|.+.+.|.++|++
T Consensus 72 ~Pt~~~~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 72 EPTFLFYKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred CcEEEEEECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999999988899999999876
No 6
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.89 E-value=1.3e-22 Score=147.22 Aligned_cols=84 Identities=12% Similarity=0.196 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|++.+... .++++||+|||+||++|+.|.|.|+++++++.+ .+.|++||+ |++++++.+|+|.++||
T Consensus 1 ~~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDv----D~~~~la~~~~V~~iPT 71 (114)
T cd02954 1 SGWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDI----DEVPDFNKMYELYDPPT 71 (114)
T ss_pred CHHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEEC----CCCHHHHHHcCCCCCCE
Confidence 357888888742 378999999999999999999999999999987 589999999 99999999999999999
Q ss_pred EEEEECCEEEEEe
Q 027890 182 FHFYKNGALVEAF 194 (217)
Q Consensus 182 ~~~~~~G~~v~~~ 194 (217)
+++|++|+.+.+.
T Consensus 72 f~~fk~G~~v~~~ 84 (114)
T cd02954 72 VMFFFRNKHMKID 84 (114)
T ss_pred EEEEECCEEEEEE
Confidence 9999999999998
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=2.2e-22 Score=146.70 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=88.3
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHH-HH
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA-ER 173 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~-~~ 173 (217)
+.+.++ +.++|++++.- ...+++++|+|||+||++|+.+.|.|+++++.+.+ .+.|++||+ +.+..++ ++
T Consensus 9 ~~v~~l-~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~----d~~~~l~~~~ 79 (113)
T cd03006 9 SPVLDF-YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINC----WWPQGKCRKQ 79 (113)
T ss_pred CCeEEe-chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEEC----CCChHHHHHh
Confidence 456677 88999987431 11389999999999999999999999999999976 599999999 8888898 59
Q ss_pred cCCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHH
Q 027890 174 LKIKTVPLFHFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l 206 (217)
|+|.++||+++|++|+....+ |.++.+.|..|+
T Consensus 80 ~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 80 KHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999999998876666 789999998873
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.89 E-value=5.3e-22 Score=141.44 Aligned_cols=99 Identities=34% Similarity=0.516 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.|.++|++.+.+ .++++||+||++||++|+.+.|.|+++++.+.+ ++.|+.||+ +++..++++|+|.++|
T Consensus 4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~----~~~~~l~~~~~v~~~P 73 (103)
T PF00085_consen 4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDC----DENKELCKKYGVKSVP 73 (103)
T ss_dssp ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEET----TTSHHHHHHTTCSSSS
T ss_pred CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhh----hccchhhhccCCCCCC
Confidence 388999999987 379999999999999999999999999999986 699999999 8889999999999999
Q ss_pred EEEEEECCEEEEEe-CCCCHHHHHHHHHHh
Q 027890 181 LFHFYKNGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~~~G~~v~~~-~~~~~~~l~~~l~~~ 209 (217)
|+++|++|+.+.++ |..+.+.|.+||+++
T Consensus 74 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 74 TIIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999888 667999999999986
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=3.9e-22 Score=142.57 Aligned_cols=98 Identities=15% Similarity=0.325 Sum_probs=88.0
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.++.+ +.++|++.+.. +++++|+||++||++|+.+.|.|+++++.+.+ .+.|++||+ ++++.++++|+
T Consensus 2 ~~~~l-~~~~f~~~v~~----~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~----~~~~~~~~~~~ 69 (101)
T cd03003 2 EIVTL-DRGDFDAAVNS----GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNC----GDDRMLCRSQG 69 (101)
T ss_pred CeEEc-CHhhHHHHhcC----CCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeC----CccHHHHHHcC
Confidence 35566 78899999865 69999999999999999999999999999976 599999999 88899999999
Q ss_pred CCCCcEEEEEECCEEEEEe-CCCCHHHHHHH
Q 027890 176 IKTVPLFHFYKNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~ 205 (217)
|.++||+++|++|+.+.++ |.++.+.|.+|
T Consensus 70 v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 70 VNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCccCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 9999999999999888777 66888888876
No 10
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.88 E-value=6.5e-22 Score=145.40 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=93.0
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChh--hH--HhHHHHHHHHHHh--CCCCCCEEEEEEEccCCcchhHH
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGS--CK--YIEQGFSKLCKGS--GDQEAPVIFLKHNVIDEYDEQSE 169 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~~~~v~~~~vd~~d~~~~~~~ 169 (217)
.+..+ +.++|++.+.++ +.++|++||++||++ |+ .+.|.+.+++.++ .+ ++.|++||+ +++++
T Consensus 10 ~v~~l-t~~nF~~~v~~~---~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~----d~~~~ 78 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKY---DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDS----KKDAK 78 (120)
T ss_pred ceeeC-ChhhHHHHHHhC---CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeC----CCCHH
Confidence 45555 789999999884 789999999999987 99 8899999999988 55 699999999 99999
Q ss_pred HHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhc
Q 027890 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYT 210 (217)
Q Consensus 170 l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~ 210 (217)
++++|+|.++||+++|++|+.+...|.++.+.|.+||.+..
T Consensus 79 La~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 79 VAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998448899999999999764
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1.1e-21 Score=140.79 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=87.2
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
++++ +.++|++.+... +++++|+|||+||++|+.+.|.|+++++++.+ .+.|++||+ +.+.+++++|+|
T Consensus 3 v~~l-~~~~f~~~i~~~---~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~----~~~~~~~~~~~i 71 (104)
T cd03004 3 VITL-TPEDFPELVLNR---KEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDC----QKYESLCQQANI 71 (104)
T ss_pred ceEc-CHHHHHHHHhcC---CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEEC----CchHHHHHHcCC
Confidence 4556 788999998763 67999999999999999999999999999866 599999999 889999999999
Q ss_pred CCCcEEEEEECC-EEEEEe-CCCC-HHHHHHHH
Q 027890 177 KTVPLFHFYKNG-ALVEAF-PTRD-KERIDAAI 206 (217)
Q Consensus 177 ~~~Pt~~~~~~G-~~v~~~-~~~~-~~~l~~~l 206 (217)
.++||+++|++| +.+.++ |..+ .++|.+||
T Consensus 72 ~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 72 RAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999999999977 888777 5565 88998875
No 12
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.2e-22 Score=161.79 Aligned_cols=108 Identities=23% Similarity=0.418 Sum_probs=98.1
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.+.++ |..+|++.+.... ..+||||+||+|||++|+.+.|.+++++..|.+ ++.+++||| |.++.++.+||
T Consensus 24 ~I~dv-T~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~----D~~p~vAaqfg 94 (304)
T COG3118 24 GIKDV-TEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNC----DAEPMVAAQFG 94 (304)
T ss_pred cceec-hHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecC----CcchhHHHHhC
Confidence 47777 8899998876653 357999999999999999999999999999999 799999999 99999999999
Q ss_pred CCCCcEEEEEECCEEEEEeC-CCCHHHHHHHHHHhccC
Q 027890 176 IKTVPLFHFYKNGALVEAFP-TRDKERIDAAILKYTST 212 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~~-~~~~~~l~~~l~~~~~~ 212 (217)
|+++||++.|++|+.+..|. ....+.|++||.++++.
T Consensus 95 iqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 95 VQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred cCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999994 56777999999999876
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=3.1e-21 Score=139.64 Aligned_cols=102 Identities=22% Similarity=0.448 Sum_probs=86.9
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCC---CCEEEEEEEccCCcchhHHHHH
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQE---APVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~v~~~~vd~~d~~~~~~~l~~ 172 (217)
.++++ +.++|++.+.. +++++|+|||+||++|+.+.|.|+++++.+.+.. ..+.|++||+ +.+.++++
T Consensus 2 ~v~~l-~~~~f~~~i~~----~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~----d~~~~l~~ 72 (108)
T cd02996 2 EIVSL-TSGNIDDILQS----AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC----DKESDIAD 72 (108)
T ss_pred ceEEc-CHhhHHHHHhc----CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC----CCCHHHHH
Confidence 35566 78999998865 7899999999999999999999999998764321 2489999999 88899999
Q ss_pred HcCCCCCcEEEEEECCEEE-EEe-CCCCHHHHHHHH
Q 027890 173 RLKIKTVPLFHFYKNGALV-EAF-PTRDKERIDAAI 206 (217)
Q Consensus 173 ~~~I~~~Pt~~~~~~G~~v-~~~-~~~~~~~l~~~l 206 (217)
+|+|.++||+++|++|+.. ..+ |.++.++|.+||
T Consensus 73 ~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 73 RYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred hCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999999999843 444 778999998885
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.87 E-value=3.2e-21 Score=136.35 Aligned_cols=95 Identities=22% Similarity=0.401 Sum_probs=84.6
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEE
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFH 183 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~ 183 (217)
++|++.+... .+++++|+||++||++|+.+.|.++++++.+.+ .+.+++||+ +.+.+++++|+|.++||++
T Consensus 1 ~~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~----~~~~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNC----DAQPQIAQQFGVQALPTVY 71 (96)
T ss_pred CChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEec----cCCHHHHHHcCCCCCCEEE
Confidence 3577777653 278999999999999999999999999999876 589999999 8899999999999999999
Q ss_pred EEECCEEEEEe-CCCCHHHHHHHHH
Q 027890 184 FYKNGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 184 ~~~~G~~v~~~-~~~~~~~l~~~l~ 207 (217)
+|++|+.+.++ |..+.++|..||+
T Consensus 72 ~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 72 LFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeCCEEeeeecCCCCHHHHHHHhC
Confidence 99999999888 6688999998874
No 15
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.87 E-value=4.2e-21 Score=144.44 Aligned_cols=108 Identities=9% Similarity=0.150 Sum_probs=93.2
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+..+.+.++|++++..+ .+++|||+|||+||++|+.+.|.|+++++++.+ .+.|++||+ |++++++.+|+|
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDV----De~~dla~~y~I 75 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDI----TEVPDFNTMYEL 75 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEEC----CCCHHHHHHcCc
Confidence 45678999999999854 489999999999999999999999999999877 588899999 999999999999
Q ss_pred CCCcEEE-EEECCE-EEEEeCC---------CCHHHHHHHHHHhccCC
Q 027890 177 KTVPLFH-FYKNGA-LVEAFPT---------RDKERIDAAILKYTSTT 213 (217)
Q Consensus 177 ~~~Pt~~-~~~~G~-~v~~~~~---------~~~~~l~~~l~~~~~~~ 213 (217)
.+.|+++ ||++|+ .+.+..| .+.++|.+.++.....+
T Consensus 76 ~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 76 YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 9777666 889998 8888744 67889988888776443
No 16
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=155.13 Aligned_cols=109 Identities=33% Similarity=0.561 Sum_probs=102.0
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.|+.|.++.+|+..+..+ ..+.++|+|+|+||+||+++.|.|+.++.+|++ .+|++||+ |+....+..+|
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdV----d~c~~taa~~g 71 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDV----DECRGTAATNG 71 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeH----HHhhchhhhcC
Confidence 467888999999999875 478999999999999999999999999999987 89999999 99999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCCC
Q 027890 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~~~ 214 (217)
|..+|||++|+||..+..+.|.++..|++.+.++++.++
T Consensus 72 V~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 72 VNAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYASTSA 110 (288)
T ss_pred cccCceEEEEecCeEeeeecCCCHHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999986653
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=1e-20 Score=138.25 Aligned_cols=101 Identities=27% Similarity=0.461 Sum_probs=89.4
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
.+.+..|.+.++|.+.+.+ +++++|+||++||++|+.+.|.++++++++++ +.|++||+ ++.++++++
T Consensus 3 ~g~v~~i~~~~~~~~~i~~----~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~----~~~~~l~~~ 70 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKS----SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNA----EKAPFLVEK 70 (113)
T ss_pred CCCeEEeCCHHHHHHHHhC----CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEc----ccCHHHHHH
Confidence 3578889888999999976 78999999999999999999999999998875 89999999 999999999
Q ss_pred cCCCCCcEEEEEECCEEEEEe-C-----C---CCHHHHHHHH
Q 027890 174 LKIKTVPLFHFYKNGALVEAF-P-----T---RDKERIDAAI 206 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~-~-----~---~~~~~l~~~l 206 (217)
|+|.++||+++|++|+.+.++ | + .+.+.++.||
T Consensus 71 ~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 71 LNIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 999999999999999999886 2 1 3566676665
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.86 E-value=1.6e-20 Score=142.01 Aligned_cols=103 Identities=25% Similarity=0.463 Sum_probs=92.7
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.+.++ +.++|++++.. +++++|+||++||++|+.+.|.|.++++++.+ ++.|+++|+ +.+++++++|+
T Consensus 36 ~~i~~-~~~~~~~~i~~----~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~----~~~~~l~~~~~ 103 (139)
T PRK10996 36 EVINA-TGETLDKLLQD----DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNT----EAERELSARFR 103 (139)
T ss_pred CCEEc-CHHHHHHHHhC----CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeC----CCCHHHHHhcC
Confidence 34454 78999998865 89999999999999999999999999998876 699999999 88899999999
Q ss_pred CCCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 176 IKTVPLFHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
|.++||+++|++|+.+.++ |..+.+.|.+||++++
T Consensus 104 V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 104 IRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999999998 6688999999999763
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.86 E-value=1.8e-20 Score=135.74 Aligned_cols=105 Identities=21% Similarity=0.376 Sum_probs=93.3
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
+.++++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++.+.+ ++.++.+|+ +....++++|
T Consensus 3 ~~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~----~~~~~~~~~~ 71 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI----DQNPGTAPKY 71 (109)
T ss_pred Ccceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEEC----CCChhHHHhC
Confidence 356777 66899887654 378999999999999999999999999999976 699999999 8889999999
Q ss_pred CCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 175 KIKTVPLFHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
+|.++||+++|++|+.+.++ |..+.++|..+|.+++
T Consensus 72 ~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999888 5678999999999875
No 20
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.85 E-value=9.4e-21 Score=137.96 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+.++|++.+.. ...+++++|+|||+||++|+.+.|.|+++++++.+. ++.+++||+ +..+.++++++|.++|
T Consensus 9 ~~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~----d~~~~l~~~~~V~~~P 81 (111)
T cd02963 9 LTFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNA----GHERRLARKLGAHSVP 81 (111)
T ss_pred eeHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEec----cccHHHHHHcCCccCC
Confidence 377888765432 113899999999999999999999999999998642 589999999 8889999999999999
Q ss_pred EEEEEECCEEEEEe-CCCCHHHHHHHHHHh
Q 027890 181 LFHFYKNGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~~~G~~v~~~-~~~~~~~l~~~l~~~ 209 (217)
|+++|++|+.+.+. |..+.+.|.++|+++
T Consensus 82 t~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 82 AIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 99999999999888 558899999999863
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=7.4e-21 Score=135.99 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=79.4
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHHHHHcCCCCCcEE
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLKIKTVPLF 182 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~-~~~~l~~~~~I~~~Pt~ 182 (217)
+++.+++... .+++++|+|||+||++|+.+.|.|+++++.+++ +.++.||. + .++.++++|+|.++||+
T Consensus 7 ~~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~----~~~~~~l~~~~~V~~~PT~ 76 (100)
T cd02999 7 NIALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEE----SSIKPSLLSRYGVVGFPTI 76 (100)
T ss_pred hHHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEEC----CCCCHHHHHhcCCeecCEE
Confidence 4555555543 489999999999999999999999999999875 88999998 6 78899999999999999
Q ss_pred EEEECCEEEEEe-CCCCHHHHHHHH
Q 027890 183 HFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 183 ~~~~~G~~v~~~-~~~~~~~l~~~l 206 (217)
++|++| .+.++ |.++.+.|.+||
T Consensus 77 ~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 77 LLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred EEEcCC-ceeEecCCCCHHHHHhhC
Confidence 999998 56666 779999998875
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.85 E-value=1.6e-20 Score=134.11 Aligned_cols=99 Identities=24% Similarity=0.464 Sum_probs=84.7
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.++++ +.++|++++. +. ++|+|||+||++|+.+.|.|+++++.+.. .++.++++|+ +.++.++++|+
T Consensus 2 ~v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~----~~~~~~~~~~~ 68 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDV----TQEPGLSGRFF 68 (101)
T ss_pred ceEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEc----cCCHhHHHHcC
Confidence 35666 7889998773 33 78999999999999999999999987653 2599999999 88889999999
Q ss_pred CCCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHH
Q 027890 176 IKTVPLFHFYKNGALVEAF-PTRDKERIDAAILK 208 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l~~ 208 (217)
|.++||+++|++|+. .++ |..+.++|..||++
T Consensus 69 i~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 69 VTALPTIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CcccCEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 999999999999986 445 77899999999864
No 23
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=2.7e-20 Score=132.05 Aligned_cols=96 Identities=36% Similarity=0.634 Sum_probs=87.7
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+.++.+.++|.+++.. +++++|+||++||++|+.+.|.|+++++.+.+ +.|+.+|+ ++...++++|+|
T Consensus 2 v~~i~~~~~~~~~~~~----~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~----~~~~~~~~~~~v 69 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQ----NELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDV----DELSEVAEKENI 69 (98)
T ss_pred eEEecCHHHHHHHHhc----CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEEC----cchHHHHHHCCC
Confidence 5678899999999876 89999999999999999999999999998765 89999999 888999999999
Q ss_pred CCCcEEEEEECCEEEEEeCCCCHHHHHH
Q 027890 177 KTVPLFHFYKNGALVEAFPTRDKERIDA 204 (217)
Q Consensus 177 ~~~Pt~~~~~~G~~v~~~~~~~~~~l~~ 204 (217)
.++||+++|++|+.+.++.|...++|.+
T Consensus 70 ~~~Pt~~~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 70 TSMPTFKVFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred ceeeEEEEEeCCeEEEEEeCCCHHHhhc
Confidence 9999999999999999997788888764
No 24
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.85 E-value=3.4e-20 Score=131.17 Aligned_cols=96 Identities=28% Similarity=0.582 Sum_probs=87.2
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
|.++|++++..+. +++++|+||++||++|+.+.|.|+++++++.. .+.++++|+ ++..+++++|+|.++||
T Consensus 1 s~~~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~----~~~~~~~~~~~i~~~Pt 71 (97)
T cd02984 1 SEEEFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEA----EELPEISEKFEITAVPT 71 (97)
T ss_pred CHHHHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEcc----ccCHHHHHhcCCccccE
Confidence 4688999998842 69999999999999999999999999998643 699999999 88899999999999999
Q ss_pred EEEEECCEEEEEeCCCCHHHHHHHH
Q 027890 182 FHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 182 ~~~~~~G~~v~~~~~~~~~~l~~~l 206 (217)
+++|++|+.+.+..|.+.++|.+.|
T Consensus 72 ~~~~~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 72 FVFFRNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEECCEEEEEEeCCCHHHHHHhh
Confidence 9999999999999888999998876
No 25
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.84 E-value=3e-20 Score=132.51 Aligned_cols=99 Identities=22% Similarity=0.489 Sum_probs=86.4
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027890 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~ 177 (217)
+++ +.++|++.+.. + +++|+|||+||++|+.+.|.|.++++.+.+....+.++.+|+ +.+..++++|+|.
T Consensus 3 ~~l-~~~~f~~~~~~----~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~v~ 72 (102)
T cd03005 3 LEL-TEDNFDHHIAE----G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC----TQHRELCSEFQVR 72 (102)
T ss_pred eEC-CHHHHHHHhhc----C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC----CCChhhHhhcCCC
Confidence 445 77899999964 3 599999999999999999999999999875344699999999 8888999999999
Q ss_pred CCcEEEEEECCEEEEEe-CCCCHHHHHHHH
Q 027890 178 TVPLFHFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 178 ~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l 206 (217)
++||+++|++|+.+.++ |..+.++|.+||
T Consensus 73 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 73 GYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred cCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999999888777 778898888875
No 26
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=4.3e-20 Score=134.87 Aligned_cols=90 Identities=30% Similarity=0.539 Sum_probs=79.9
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
.+.+.++++ ++|.+.+.... .+++++|+||++||++|+.+.|.|+++++++.+ +.|++||+ +++ +++++
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~----~~~-~l~~~ 71 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINA----EKA-FLVNY 71 (113)
T ss_pred CceEEEEcH-HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEc----hhh-HHHHh
Confidence 356778855 99999997631 148999999999999999999999999999875 89999999 777 99999
Q ss_pred cCCCCCcEEEEEECCEEEEEe
Q 027890 174 LKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~ 194 (217)
|+|.++||+++|++|+.+.++
T Consensus 72 ~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 72 LDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred cCCCcCCEEEEEECCEEEEEE
Confidence 999999999999999999988
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.83 E-value=5.2e-20 Score=132.97 Aligned_cols=100 Identities=24% Similarity=0.435 Sum_probs=85.7
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch--hHHHHHHc
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE--QSEVAERL 174 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~--~~~l~~~~ 174 (217)
++++ +.++|++.+.+ .+++++|+|||+||++|+.+.|.|+++++.+.+ .+.++.+|+ +. +.+++++|
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~----~~~~~~~~~~~~ 70 (109)
T cd03002 2 VYEL-TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDC----DEDKNKPLCGKY 70 (109)
T ss_pred eEEc-chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEec----CccccHHHHHHc
Confidence 3455 78899999976 378899999999999999999999999999876 589999999 55 88999999
Q ss_pred CCCCCcEEEEEECCE-----EEEEe-CCCCHHHHHHHHH
Q 027890 175 KIKTVPLFHFYKNGA-----LVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 175 ~I~~~Pt~~~~~~G~-----~v~~~-~~~~~~~l~~~l~ 207 (217)
+|.++||+++|++|+ ....+ |.++.++|.+||.
T Consensus 71 ~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 71 GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999999999998775 23334 7789999999873
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.83 E-value=1.5e-19 Score=146.46 Aligned_cols=109 Identities=21% Similarity=0.340 Sum_probs=95.6
Q ss_pred ceeecCCHHHHHHHHHhhh-cCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 96 CVREFKTDAEFFKILEKSK-ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~-~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
.++++ +.++|++.+.... ..+++++|+|||+||++|+.+.|.|+++++++.+ .+.++.+|+ +++++++++|
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~----~~~~~l~~~~ 102 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDA----TRALNLAKRF 102 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecC----cccHHHHHHc
Confidence 56666 8899999887532 2358999999999999999999999999999986 599999999 8889999999
Q ss_pred CCCCCcEEEEEECCEEEEEeC-CCCHHHHHHHHHHhccC
Q 027890 175 KIKTVPLFHFYKNGALVEAFP-TRDKERIDAAILKYTST 212 (217)
Q Consensus 175 ~I~~~Pt~~~~~~G~~v~~~~-~~~~~~l~~~l~~~~~~ 212 (217)
+|.++||+++|++|+.+.+.+ ..+.++|.+|+.+....
T Consensus 103 ~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 103 AIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988874 48999999999988643
No 29
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.83 E-value=8e-20 Score=131.83 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.++|++.+.++ .+++|+|+|||+||++|+.|.|.|+++++++.+ .+.|++||+ |+.++++++|+|..+||+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDV----Dev~dva~~y~I~amPtf 72 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDV----DKVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEec----cccHHHHHhcCceeCcEE
Confidence 57899999875 489999999999999999999999999999975 399999999 999999999999999999
Q ss_pred EEEECCEEEEEe-C----------CCCHHHHHHHHHHh
Q 027890 183 HFYKNGALVEAF-P----------TRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~~G~~v~~~-~----------~~~~~~l~~~l~~~ 209 (217)
+||++|+.+.-- | -.+.+++...++..
T Consensus 73 vffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 73 IFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 999999887654 2 13456777666543
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.83 E-value=1.3e-19 Score=129.45 Aligned_cols=100 Identities=28% Similarity=0.533 Sum_probs=86.6
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch--hHHHHHHc
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE--QSEVAERL 174 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~--~~~l~~~~ 174 (217)
+.++ +.++|++.+.+ +++++|+||++||++|+.+.|.+.++++.+.. ...+.++.+|+ +. +..++++|
T Consensus 2 ~~~l-~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~~~~~~~~~~ 71 (104)
T cd02997 2 VVHL-TDEDFRKFLKK----EKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDC----TKPEHDALKEEY 71 (104)
T ss_pred eEEe-chHhHHHHHhh----CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEEC----CCCccHHHHHhC
Confidence 3455 67799999876 67999999999999999999999999998863 23689999999 55 88999999
Q ss_pred CCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHH
Q 027890 175 KIKTVPLFHFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 175 ~I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l 206 (217)
+|.++||+++|++|+.+..+ |..+.+.|.+||
T Consensus 72 ~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 72 NVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CCccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999999999999988877 668999988875
No 31
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.82 E-value=1.1e-19 Score=131.04 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=83.1
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCC--ChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTS--CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+..+|++.++. +..++|.||++| |++|+.+.|.|+++++++.+ .+.|++||+ +.+++++.+|+|.++
T Consensus 16 ~~~~~~~~~~~----~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdi----d~~~~la~~f~V~sI 84 (111)
T cd02965 16 DAATLDDWLAA----GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGR----ADEQALAARFGVLRT 84 (111)
T ss_pred ccccHHHHHhC----CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEEC----CCCHHHHHHcCCCcC
Confidence 78899988844 899999999997 99999999999999999987 589999999 888999999999999
Q ss_pred cEEEEEECCEEEEEe-CCCCHHHHH
Q 027890 180 PLFHFYKNGALVEAF-PTRDKERID 203 (217)
Q Consensus 180 Pt~~~~~~G~~v~~~-~~~~~~~l~ 203 (217)
||+++|++|+.+.++ |..+.+++.
T Consensus 85 PTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 85 PALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEECCEEEEEEeCccCHHHHh
Confidence 999999999999998 557777765
No 32
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.6e-20 Score=163.07 Aligned_cols=113 Identities=23% Similarity=0.423 Sum_probs=102.7
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
...|..+ +.++|+..|.. +..++|.||||||++|+.+.|.+++.+..+....+.+.+++||+ .++.++|.+
T Consensus 24 ~~~Vl~L-t~dnf~~~i~~----~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa----t~~~~~~~~ 94 (493)
T KOG0190|consen 24 EEDVLVL-TKDNFKETING----HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA----TEESDLASK 94 (493)
T ss_pred ccceEEE-ecccHHHHhcc----CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec----chhhhhHhh
Confidence 3455555 88999999987 89999999999999999999999999999988778899999999 778999999
Q ss_pred cCCCCCcEEEEEECCEE-EEEeCCCCHHHHHHHHHHhccCCCC
Q 027890 174 LKIKTVPLFHFYKNGAL-VEAFPTRDKERIDAAILKYTSTTSN 215 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~-v~~~~~~~~~~l~~~l~~~~~~~~~ 215 (217)
|+|.++||+.+|+||+. ..+.|++..+.|..||.+..++++.
T Consensus 95 y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASK 137 (493)
T ss_pred hcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCce
Confidence 99999999999999996 6666999999999999999998764
No 33
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.82 E-value=4.4e-19 Score=139.05 Aligned_cols=106 Identities=21% Similarity=0.401 Sum_probs=90.8
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
.+.+.+|++.++|.+.+..+. .+.+|||+||++||++|+.+.|.|++++.+|+. +.|++||+ +.. +++.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~----d~~-~l~~~ 130 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRA----SAT-GASDE 130 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEec----cch-hhHHh
Confidence 678899977799999987632 135999999999999999999999999999875 99999999 666 89999
Q ss_pred cCCCCCcEEEEEECCEEEEEeC--------CCCHHHHHHHHHHh
Q 027890 174 LKIKTVPLFHFYKNGALVEAFP--------TRDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~~--------~~~~~~l~~~l~~~ 209 (217)
|+|.++||+++|++|+.+.++. ..+.+.|+.+|.++
T Consensus 131 f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 131 FDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999999999999999998872 24567888777653
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.81 E-value=4.4e-19 Score=126.64 Aligned_cols=99 Identities=23% Similarity=0.392 Sum_probs=85.9
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+.++ +.++|++.+.. .+++++|+||++||++|+.+.|.|.++++++.+ .+.|+.+|+ +.+.+++++|+|
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~----~~~~~~~~~~~i 70 (103)
T cd03001 2 VVEL-TDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDA----DVHQSLAQQYGV 70 (103)
T ss_pred eEEc-CHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEEC----cchHHHHHHCCC
Confidence 3455 78899998876 267799999999999999999999999999876 599999999 889999999999
Q ss_pred CCCcEEEEEECC-EEEEEe-CCCCHHHHHHHH
Q 027890 177 KTVPLFHFYKNG-ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 177 ~~~Pt~~~~~~G-~~v~~~-~~~~~~~l~~~l 206 (217)
.++|++++|++| +....+ |+.+.++|.+|+
T Consensus 71 ~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 71 RGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 999999999988 333334 889999999986
No 35
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.81 E-value=5.9e-19 Score=134.94 Aligned_cols=92 Identities=23% Similarity=0.383 Sum_probs=80.7
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
..+.++ +.++|++.+... .+++++|+|||+||++|+.+.|.|+++++++.+ .++.|++||+ +++++++++|
T Consensus 28 ~~v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDv----d~~~~la~~~ 98 (152)
T cd02962 28 EHIKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDI----GRFPNVAEKF 98 (152)
T ss_pred CccEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEEC----CCCHHHHHHc
Confidence 355666 678999988653 267999999999999999999999999998864 2599999999 8999999999
Q ss_pred CCCC------CcEEEEEECCEEEEEeC
Q 027890 175 KIKT------VPLFHFYKNGALVEAFP 195 (217)
Q Consensus 175 ~I~~------~Pt~~~~~~G~~v~~~~ 195 (217)
+|.+ +||+++|++|+.+.++.
T Consensus 99 ~V~~~~~v~~~PT~ilf~~Gk~v~r~~ 125 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQGGKEVARRP 125 (152)
T ss_pred CceecCCcCCCCEEEEEECCEEEEEEe
Confidence 9988 99999999999999884
No 36
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.81 E-value=2.9e-19 Score=128.40 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
+++|++.. + +++++|.||++||++|+.+.|.|+++++.+.+....+.++.+|+ +..+.++++|+|.++||+
T Consensus 6 ~~~~~~~~-~----~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 6 DDSFKDVR-K----EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA----TAYSSIASEFGVRGYPTI 76 (104)
T ss_pred hhhhhhhc-c----CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEEC----ccCHhHHhhcCCccccEE
Confidence 36677642 2 68999999999999999999999999999864334699999999 888999999999999999
Q ss_pred EEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027890 183 HFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~~G~~v~~~~~~~~~~l~~~l~~~ 209 (217)
++|++|......|..+.++|..|+++.
T Consensus 77 ~l~~~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCCceeecCCCCHHHHHHHHHhh
Confidence 999887654444778999999999864
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.81 E-value=7.5e-19 Score=124.49 Aligned_cols=99 Identities=32% Similarity=0.518 Sum_probs=88.5
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|.+.+.. .+++++|+||++||++|+.+.+.+.++++.+.+ ++.|+.+|+ +.+..++++|+|.++|+
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~----~~~~~~~~~~~v~~~P~ 71 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNV----DENPDIAAKYGIRSIPT 71 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEEC----CCCHHHHHHcCCCcCCE
Confidence 56788888876 367999999999999999999999999988875 599999999 88899999999999999
Q ss_pred EEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 182 FHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 182 ~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
+++|++|+.+... |..+.++|..+|++.+
T Consensus 72 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 72 LLLFKNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EEEEeCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 9999999988887 6678899999998753
No 38
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.81 E-value=5.3e-19 Score=134.21 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=85.4
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
...+|++++.. ++++||+|||+||++|+.+.|.+.++++.+.+ .+.|+.||+.+ +....++++|+|.++||
T Consensus 9 ~~~~~~~a~~~----gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~--~~~~~~~~~~~V~~iPt 79 (142)
T cd02950 9 SSTPPEVALSN----GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDN--PKWLPEIDRYRVDGIPH 79 (142)
T ss_pred ccCCHHHHHhC----CCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCC--cccHHHHHHcCCCCCCE
Confidence 34556666654 89999999999999999999999999999876 57888888821 33468899999999999
Q ss_pred EEEEE-CCEEEEEe-CCCCHHHHHHHHHHhccC
Q 027890 182 FHFYK-NGALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 182 ~~~~~-~G~~v~~~-~~~~~~~l~~~l~~~~~~ 212 (217)
++||+ +|+++.++ |....++|.++|++++..
T Consensus 80 ~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 80 FVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 99995 89999998 557788999999988743
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.81 E-value=4.8e-19 Score=125.92 Aligned_cols=100 Identities=24% Similarity=0.456 Sum_probs=87.3
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|++.+.. +++++|.||++||++|+.+.+.|+++++.+.+ ..++.++.+|+ +.+..++++|+|.++|+
T Consensus 2 ~~~~~~~~~~~----~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-~~~~~~~~~d~----~~~~~~~~~~~i~~~P~ 72 (102)
T TIGR01126 2 TASNFDDIVLS----NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-DPDIVLAKVDA----TAEKDLASRFGVSGFPT 72 (102)
T ss_pred chhhHHHHhcc----CCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-CCceEEEEEEc----cchHHHHHhCCCCcCCE
Confidence 57889988864 89999999999999999999999999998875 23599999999 89999999999999999
Q ss_pred EEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 182 FHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 182 ~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
+++|++|+.+..+ |..+.++|..||++++
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 73 IKFFPKGKKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred EEEecCCCcceeecCCCCHHHHHHHHHhcC
Confidence 9999877644455 7789999999998863
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.81 E-value=2.8e-19 Score=128.38 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=81.5
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
++|.+++.. +++++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.+|+..+.+...+++++|+|.++|
T Consensus 2 ~~~~~~~~~----~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~P 74 (104)
T cd02953 2 AALAQALAQ----GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPP 74 (104)
T ss_pred HHHHHHHHc----CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCC
Confidence 567777765 89999999999999999999987 577777764 59999999943323368999999999999
Q ss_pred EEEEEE--CCEEEEEe-CCCCHHHHHHHHH
Q 027890 181 LFHFYK--NGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 181 t~~~~~--~G~~v~~~-~~~~~~~l~~~l~ 207 (217)
|+++|+ +|+.+.++ |..+.++|.++|+
T Consensus 75 ti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 75 TYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 999998 79988888 6689999988873
No 41
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.79 E-value=1.3e-18 Score=126.19 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=82.9
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch-hHHHHH-H
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-QSEVAE-R 173 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~-~~~l~~-~ 173 (217)
.|+++ +.++|+.++... ..+++++|.||++||++|+.+.|.|+++++.+.+ .++.++.||+ +. ...++. .
T Consensus 2 ~v~~~-~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~----d~~~~~~~~~~ 73 (109)
T cd02993 2 AVVTL-SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNA----DGEQREFAKEE 73 (109)
T ss_pred cceec-cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEEC----CccchhhHHhh
Confidence 45666 778999888532 2379999999999999999999999999999874 2599999999 65 567776 5
Q ss_pred cCCCCCcEEEEEECC-EEEEEe-CC-CCHHHHHHHH
Q 027890 174 LKIKTVPLFHFYKNG-ALVEAF-PT-RDKERIDAAI 206 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G-~~v~~~-~~-~~~~~l~~~l 206 (217)
++|.++||+++|++| .....+ |. ++.+.|..||
T Consensus 74 ~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 74 LQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999999999754 444455 53 7999998875
No 42
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.79 E-value=2.7e-18 Score=121.90 Aligned_cols=92 Identities=24% Similarity=0.448 Sum_probs=81.9
Q ss_pred HHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEE
Q 027890 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFY 185 (217)
Q Consensus 106 f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~ 185 (217)
++..+.. .+++++|+||++||+.|+.+.|.++++++++.+ ++.++.+|+ +++++++.+++|.++|++++|
T Consensus 5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~----d~~~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDI----DEDQEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEEC----CCCHHHHHHCCCeeccEEEEE
Confidence 4555555 389999999999999999999999999999876 699999999 889999999999999999999
Q ss_pred ECCEEEEEe-CCCCHHHHHHHHH
Q 027890 186 KNGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 186 ~~G~~v~~~-~~~~~~~l~~~l~ 207 (217)
++|+.+.++ |..+.++|.++|+
T Consensus 75 ~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 75 KDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred ECCeEEEEEeCCccHHHHHHhhC
Confidence 999999998 6678889888873
No 43
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.78 E-value=1.9e-18 Score=123.52 Aligned_cols=101 Identities=28% Similarity=0.510 Sum_probs=84.7
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch-hHHHHHHcC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-QSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~-~~~l~~~~~ 175 (217)
+.++ +.++|++.+.. .+++++|+||++||++|+.+.|.+.++++.+.. ..++.++.+|+ +. ++.++++|+
T Consensus 2 ~~~l-~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~~~~~~~~~~ 72 (105)
T cd02998 2 VVEL-TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDA----DEANKDLAKKYG 72 (105)
T ss_pred eEEc-chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEEC----CCcchhhHHhCC
Confidence 3455 66889988765 267999999999999999999999999999862 23699999999 77 899999999
Q ss_pred CCCCcEEEEEECC-EEEEEe-CCCCHHHHHHHH
Q 027890 176 IKTVPLFHFYKNG-ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 176 I~~~Pt~~~~~~G-~~v~~~-~~~~~~~l~~~l 206 (217)
|.++|++++|++| +....+ |+.+.++|.+||
T Consensus 73 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 73 VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999999999865 455555 678999998875
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.78 E-value=2.6e-18 Score=122.70 Aligned_cols=100 Identities=21% Similarity=0.387 Sum_probs=83.8
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+.++ +.++|++.+.+. +++++|+||++||++|+.+.|.|+++++.+.+ ..++.++++|+ +.+ +++..+++
T Consensus 2 v~~l-~~~~f~~~i~~~---~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~-~~~~~~~~ 71 (104)
T cd02995 2 VKVV-VGKNFDEVVLDS---DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDA----TAN-DVPSEFVV 71 (104)
T ss_pred eEEE-chhhhHHHHhCC---CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeC----cch-hhhhhccC
Confidence 3455 778999998873 68999999999999999999999999998865 23699999999 665 68889999
Q ss_pred CCCcEEEEEECCE--EEEEe-CCCCHHHHHHHH
Q 027890 177 KTVPLFHFYKNGA--LVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 177 ~~~Pt~~~~~~G~--~v~~~-~~~~~~~l~~~l 206 (217)
.++||+++|++|+ ...++ |..+.++|.+||
T Consensus 72 ~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999999998776 34444 778999998875
No 45
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=2e-18 Score=126.30 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=75.9
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.++++ +.++|++.+.+. +++++|+||++||++|+.+.|.|+++++.+.+....+.|+.+|+.. +.+.+++++|+
T Consensus 2 ~v~~l-~~~~f~~~i~~~---~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~~ 75 (114)
T cd02992 2 PVIVL-DAASFNSALLGS---PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--EENVALCRDFG 75 (114)
T ss_pred CeEEC-CHHhHHHHHhcC---CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--hhhHHHHHhCC
Confidence 35566 788999999873 6899999999999999999999999999886533458999999832 45778999999
Q ss_pred CCCCcEEEEEECCEEE
Q 027890 176 IKTVPLFHFYKNGALV 191 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v 191 (217)
|.++||+++|++|...
T Consensus 76 i~~~Pt~~lf~~~~~~ 91 (114)
T cd02992 76 VTGYPTLRYFPPFSKE 91 (114)
T ss_pred CCCCCEEEEECCCCcc
Confidence 9999999999988743
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.76 E-value=7.2e-18 Score=118.81 Aligned_cols=96 Identities=23% Similarity=0.455 Sum_probs=83.3
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|.+.+.+ +++++|+||++||++|+.+.+.|.++++.+.. ...+.|+.+|+ +.+..++++|+|.++||
T Consensus 4 ~~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~----~~~~~~~~~~~i~~~Pt 74 (101)
T cd02961 4 TDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDC----TANNDLCSEYGVRGYPT 74 (101)
T ss_pred cHHHHHHHHhC----CCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeec----cchHHHHHhCCCCCCCE
Confidence 67899999987 56999999999999999999999999998841 22699999999 88999999999999999
Q ss_pred EEEEECC-EEEEEe-CCCCHHHHHHHH
Q 027890 182 FHFYKNG-ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 182 ~~~~~~G-~~v~~~-~~~~~~~l~~~l 206 (217)
+++|++| +...++ |..+.++|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 75 IKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 9999866 666666 667888888874
No 47
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=7.4e-18 Score=122.72 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=80.9
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEEC--CCCh---hhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHH
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYR--TSCG---SCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEV 170 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a--~wC~---~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~-~~~~l 170 (217)
++.+ +.++|++.|.. ++.+||.||| |||+ +|+.+.|.+.+.+. .+.+++||+.|..+ ++.+|
T Consensus 3 ~v~L-~~~nF~~~v~~----~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L 70 (116)
T cd03007 3 CVDL-DTVTFYKVIPK----FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMEL 70 (116)
T ss_pred eeEC-ChhhHHHHHhc----CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHH
Confidence 3444 88999999987 8999999999 8888 77777766665543 38999999944212 46889
Q ss_pred HHHcCCC--CCcEEEEEECCE---EEEEeCC-CCHHHHHHHHHHh
Q 027890 171 AERLKIK--TVPLFHFYKNGA---LVEAFPT-RDKERIDAAILKY 209 (217)
Q Consensus 171 ~~~~~I~--~~Pt~~~~~~G~---~v~~~~~-~~~~~l~~~l~~~ 209 (217)
|++|+|+ ++||+++|++|. .+.+-|+ ++.+.|.+||.++
T Consensus 71 ~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 71 GERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999 999999999884 3444475 9999999999875
No 48
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=1.4e-17 Score=149.24 Aligned_cols=110 Identities=25% Similarity=0.447 Sum_probs=97.3
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.+..+ +.++|++++.+ ++.++|+|||+||++|+.+.|.|.++++.+.....++.++.||| +.+.+++++|+
T Consensus 33 ~v~~l-~~~~f~~~i~~----~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~----~~~~~l~~~~~ 103 (477)
T PTZ00102 33 HVTVL-TDSTFDKFITE----NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA----TEEMELAQEFG 103 (477)
T ss_pred CcEEc-chhhHHHHHhc----CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC----CCCHHHHHhcC
Confidence 45555 88999999976 78999999999999999999999999988765455799999999 88999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCCC
Q 027890 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~~~ 214 (217)
|.++||+++|++|+.+.+.|.++.+.|.+|+.++++++.
T Consensus 104 i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 104 VRGYPTIKFFNKGNPVNYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCcccEEEEEECCceEEecCCCCHHHHHHHHHHhhCCCc
Confidence 999999999999988744488999999999999988764
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.76 E-value=1.2e-17 Score=123.92 Aligned_cols=102 Identities=11% Similarity=0.206 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhcCC-CeEEEEEECCCChhhHHhHHHHH---HHHHHhCCCCCCEEEEEEEccCCc---------chhHHH
Q 027890 104 AEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVIDEY---------DEQSEV 170 (217)
Q Consensus 104 ~~f~~~l~~a~~~~-k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~v~~~~vd~~d~~---------~~~~~l 170 (217)
+++++++++ + ++++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.+|+.++. ....++
T Consensus 4 ~~~~~a~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l 76 (125)
T cd02951 4 EDLAEAAAD----GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKEL 76 (125)
T ss_pred HHHHHHHHc----CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHH
Confidence 445555544 8 99999999999999999999875 55555544 5889999983210 024789
Q ss_pred HHHcCCCCCcEEEEEE-C-CEEEEEe-CCCCHHHHHHHHHHhccC
Q 027890 171 AERLKIKTVPLFHFYK-N-GALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 171 ~~~~~I~~~Pt~~~~~-~-G~~v~~~-~~~~~~~l~~~l~~~~~~ 212 (217)
+.+|+|.++||++||+ + |+++.++ |..+.+.+.++|+..++.
T Consensus 77 ~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999997 5 6999888 557889999999887653
No 50
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.5e-17 Score=147.91 Aligned_cols=109 Identities=22% Similarity=0.452 Sum_probs=96.1
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+..+ +.++|++++.. +++++|.|||+||++|+.+.|.+.++++.+.....++.|+.||| +.+.++|++|+|
T Consensus 3 v~~l-~~~~~~~~i~~----~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~----~~~~~l~~~~~i 73 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKS----HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA----TEEKDLAQKYGV 73 (462)
T ss_pred ceEC-CHHHHHHHHhc----CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC----CCcHHHHHhCCC
Confidence 4455 78999999976 78999999999999999999999999998876555699999999 888999999999
Q ss_pred CCCcEEEEEECCEE-EEEe-CCCCHHHHHHHHHHhccCCC
Q 027890 177 KTVPLFHFYKNGAL-VEAF-PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 177 ~~~Pt~~~~~~G~~-v~~~-~~~~~~~l~~~l~~~~~~~~ 214 (217)
.++||+++|++|+. +..+ |.++.+.|.+|+.+.+.+..
T Consensus 74 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 74 SGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred ccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 99999999999887 5555 78999999999999987654
No 51
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.75 E-value=2.6e-17 Score=120.23 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE--E
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE--A 193 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~--~ 193 (217)
++..++|+||++||++|+.+.|.+++++..++ .+.|..+|+ ++.++++.+|+|.++||+++|++|.... +
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~----~i~~~~vd~----d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD----KLKLEIYDF----DEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC----ceEEEEEeC----CcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 37789999999999999999999999998874 499999999 8899999999999999999999765544 3
Q ss_pred e-CCCCHHHHHHHHHHhcc
Q 027890 194 F-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 194 ~-~~~~~~~l~~~l~~~~~ 211 (217)
+ |..+..+|.++|...++
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 4 66778899999988764
No 52
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=3.1e-17 Score=130.26 Aligned_cols=103 Identities=20% Similarity=0.383 Sum_probs=86.5
Q ss_pred CCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027890 93 PVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 93 ~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~ 172 (217)
..+.+.++ +.++|...+..+. .+.+|||+||++||++|+.|.|.|.+++.+|.. +.|++||+ +.. ..
T Consensus 80 ~~G~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~a----d~~---~~ 146 (192)
T cd02988 80 KFGEVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIS----TQC---IP 146 (192)
T ss_pred CCCeEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEh----HHh---Hh
Confidence 36788888 7788888776542 246999999999999999999999999999975 99999999 543 68
Q ss_pred HcCCCCCcEEEEEECCEEEEEe-C-------CCCHHHHHHHHHH
Q 027890 173 RLKIKTVPLFHFYKNGALVEAF-P-------TRDKERIDAAILK 208 (217)
Q Consensus 173 ~~~I~~~Pt~~~~~~G~~v~~~-~-------~~~~~~l~~~l~~ 208 (217)
+|+|.++||+++|++|+.+.++ | ..+.++|+.+|.+
T Consensus 147 ~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 147 NYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred hCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999999999887 3 2567788877764
No 53
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=2.3e-17 Score=131.74 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+.++|.++++. +.+.++++|||+||++|+.|.|.+.+++++++. +.|++||. + |+|.++|
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~----d--------~~V~~vP 64 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNL----A--------DANNEYG 64 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEcc----c--------cCcccce
Confidence 478999999875 237899999999999999999999999999976 99999998 5 9999999
Q ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHhccCC
Q 027890 181 LFHFYKNGALVEAFPTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 181 t~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~~ 213 (217)
||+||++|+.+.++.|.++.+|..++.++....
T Consensus 65 tfv~~~~g~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 65 VFEFYQNSQLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred EEEEEECCEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999987654
No 54
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.74 E-value=5.6e-17 Score=119.95 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=79.2
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-------chhHH
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------DEQSE 169 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~-------~~~~~ 169 (217)
...+ +.++|.+.+++ ++.++|+||++|||+|+.+.|.|.+++++. ++.++.||+..+. ++..+
T Consensus 8 ~~~i-t~~~~~~~i~~----~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~ 77 (122)
T TIGR01295 8 LEVT-TVVRALEALDK----KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTA 77 (122)
T ss_pred ceec-CHHHHHHHHHc----CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHH
Confidence 3444 78899999987 889999999999999999999999999983 2567777772110 02346
Q ss_pred HHHHcCC----CCCcEEEEEECCEEEEEe-C-CCCHHHHHHHHH
Q 027890 170 VAERLKI----KTVPLFHFYKNGALVEAF-P-TRDKERIDAAIL 207 (217)
Q Consensus 170 l~~~~~I----~~~Pt~~~~~~G~~v~~~-~-~~~~~~l~~~l~ 207 (217)
+.++|++ .++||+++|++|+.+.+. | ..+.++|.+++.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 6777664 559999999999999999 4 356899988864
No 55
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=4.3e-17 Score=119.55 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHhhhcCCCeEEEEEEC-------CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHH
Q 027890 100 FKTDAEFFKILEKSKETGSLVVVDFYR-------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSE 169 (217)
Q Consensus 100 i~s~~~f~~~l~~a~~~~k~vlV~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---~~~~~~ 169 (217)
+.+.++|.+.+... .+++++|+||| +||++|+.+.|.+++++.++++ ++.|++||+.+. .+.+.+
T Consensus 6 ~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 6 VRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred ccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchh
Confidence 46889999999863 36899999999 9999999999999999999885 599999999321 123579
Q ss_pred HHHHcCCC-CCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027890 170 VAERLKIK-TVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 170 l~~~~~I~-~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l 206 (217)
+..+|+|. ++||+++|++|+.+....-.+.+.+..|+
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 99999998 99999999988766555556777776665
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.71 E-value=1.5e-16 Score=140.67 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=91.8
Q ss_pred CCCCCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhH
Q 027890 90 DLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQS 168 (217)
Q Consensus 90 ~~~~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~-~~~ 168 (217)
.+...+.++.+ +.++|++++... ..++++||+|||+||++|+.|.|.|+++++.+.+. ++.|+++|+ + .+.
T Consensus 340 dl~~~~~Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~----d~~~~ 411 (457)
T PLN02309 340 DIFNSQNVVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRA----DGDQK 411 (457)
T ss_pred cccCCCCcEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEEC----CCcch
Confidence 45555677777 889999998632 24899999999999999999999999999998652 599999999 6 667
Q ss_pred HHHH-HcCCCCCcEEEEEECCE--EEEEeC-CCCHHHHHHHHHHh
Q 027890 169 EVAE-RLKIKTVPLFHFYKNGA--LVEAFP-TRDKERIDAAILKY 209 (217)
Q Consensus 169 ~l~~-~~~I~~~Pt~~~~~~G~--~v~~~~-~~~~~~l~~~l~~~ 209 (217)
+++. +|+|.++||++||++|. .+.+.+ .++.+.|..||+..
T Consensus 412 ~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 412 EFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8886 69999999999998664 344444 58999999999864
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.71 E-value=1.5e-16 Score=109.96 Aligned_cols=90 Identities=34% Similarity=0.627 Sum_probs=79.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEE
Q 027890 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~ 184 (217)
+|++++.. +++++|.||++||++|+.+.+.+.++.+... ++.++.+|+ +....++++|++.++|++++
T Consensus 2 ~~~~~~~~----~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~----~~~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 2 EFEELIKS----AKPVVVDFWAPWCGPCKAIAPVLEELAEEYP----KVKFVKVDV----DENPELAEEYGVRSIPTFLF 69 (93)
T ss_pred chHHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEEC----CCChhHHHhcCcccccEEEE
Confidence 56777766 5999999999999999999999999988833 599999999 88899999999999999999
Q ss_pred EECCEEEEEe-CCCCHHHHHHHH
Q 027890 185 YKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 185 ~~~G~~v~~~-~~~~~~~l~~~l 206 (217)
+++|+.+..+ +..+.++|..+|
T Consensus 70 ~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 70 FKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred EECCEEEEEEecCCCHHHHHHHh
Confidence 9999988888 556778888876
No 58
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.71 E-value=2.1e-17 Score=135.87 Aligned_cols=104 Identities=19% Similarity=0.334 Sum_probs=92.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEE
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFH 183 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~ 183 (217)
+++++.....+ .+..++|+||||||++|+++.|.|.++.-++.+....+.+.++|+ ...+.++.+++|++|||+.
T Consensus 31 eDLddkFkdnk-dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDa----T~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 31 EDLDDKFKDNK-DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDA----TRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhHHhhhcc-cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccc----ccchhhHhhhccCCCceEE
Confidence 44554444433 378999999999999999999999999998888778899999999 8999999999999999999
Q ss_pred EEECCEEEEEeCCCCHHHHHHHHHHhccC
Q 027890 184 FYKNGALVEAFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 184 ~~~~G~~v~~~~~~~~~~l~~~l~~~~~~ 212 (217)
||++|-.+.+.|++..+.|.+|..+...+
T Consensus 106 ~~kgd~a~dYRG~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 106 FFKGDHAIDYRGGREKDAIIEFAHRCAAA 134 (468)
T ss_pred EecCCeeeecCCCccHHHHHHHHHhcccc
Confidence 99999999999999999999998877654
No 59
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.71 E-value=1.7e-16 Score=140.38 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=88.9
Q ss_pred CCCCCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhH-
Q 027890 90 DLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQS- 168 (217)
Q Consensus 90 ~~~~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~- 168 (217)
.+.....|+++ +.++|++.++.. ..++++||+|||+||++|+.|.|.|+++++++.+. .+.|++||+ +.+.
T Consensus 346 dl~~~~~Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdv----D~~~~ 417 (463)
T TIGR00424 346 DIFDSNNVVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRA----DGDQK 417 (463)
T ss_pred cccCCCCeEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEEC----CCCcc
Confidence 34445577777 888999998621 23899999999999999999999999999998752 488999999 5432
Q ss_pred HH-HHHcCCCCCcEEEEEECCE--EEEEeC-CCCHHHHHHHHHHh
Q 027890 169 EV-AERLKIKTVPLFHFYKNGA--LVEAFP-TRDKERIDAAILKY 209 (217)
Q Consensus 169 ~l-~~~~~I~~~Pt~~~~~~G~--~v~~~~-~~~~~~l~~~l~~~ 209 (217)
++ +++|+|.++||+++|++|. .+.+.+ .++.+.|..||+..
T Consensus 418 ~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 418 EFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 34 5789999999999999774 344434 59999999999853
No 60
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.69 E-value=2e-16 Score=144.51 Aligned_cols=111 Identities=21% Similarity=0.350 Sum_probs=94.7
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~ 172 (217)
....+.+.+++++.++.++.++|+|+|+|||+||++|+.+.+.+ .++.+.+++ +.++++|++++.+++.++++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAEDVALLK 528 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChhhHHHHH
Confidence 45677889999999998887889999999999999999998875 566676654 89999999766566789999
Q ss_pred HcCCCCCcEEEEEE-CCEEE--EEe-CCCCHHHHHHHHHHhc
Q 027890 173 RLKIKTVPLFHFYK-NGALV--EAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 173 ~~~I~~~Pt~~~~~-~G~~v--~~~-~~~~~~~l~~~l~~~~ 210 (217)
+|++.++||+++|+ +|+++ .++ |..+.+++.++|++..
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99999999999997 89885 455 6689999999998754
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.69 E-value=2.2e-16 Score=141.44 Aligned_cols=112 Identities=22% Similarity=0.332 Sum_probs=94.6
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.+..+ +.++|++.+.+ .+++++|+|||+||++|+.+.|.|+++++.+.+ ...+.++++|+ +.+..++.+++
T Consensus 358 ~v~~l-~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~----~~~~~~~~~~~ 428 (477)
T PTZ00102 358 PVKVV-VGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNG----TANETPLEEFS 428 (477)
T ss_pred CeEEe-cccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEEC----CCCccchhcCC
Confidence 45666 67999998765 389999999999999999999999999998865 34699999999 77888899999
Q ss_pred CCCCcEEEEEECCEEE-EEe-CCCCHHHHHHHHHHhccCCCCC
Q 027890 176 IKTVPLFHFYKNGALV-EAF-PTRDKERIDAAILKYTSTTSND 216 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v-~~~-~~~~~~~l~~~l~~~~~~~~~~ 216 (217)
+.++||+++|++|..+ ..+ |.++.+.|.+||+++......|
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~ 471 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPFED 471 (477)
T ss_pred CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCccc
Confidence 9999999999866554 344 7799999999999998765544
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=7e-17 Score=118.59 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=74.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC--CcEE
Q 027890 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT--VPLF 182 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~--~Pt~ 182 (217)
+|+++++.++.++++++|+|||+||++|+.+.|.+.+....... ...|+.||+.. +. ..+..+|++.+ +||+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~---~~~fv~v~vd~--~~-~~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL---SHNFVMVNLED--DE-EPKDEEFSPDGGYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh---cCcEEEEEecC--CC-CchhhhcccCCCccceE
Confidence 58888888888899999999999999999999999997775433 23455666621 21 23456889986 9999
Q ss_pred EEEE-CCEEEEEe----CCCCHHHHHHHHHHh
Q 027890 183 HFYK-NGALVEAF----PTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~-~G~~v~~~----~~~~~~~l~~~l~~~ 209 (217)
+||. +|+++.++ |+.+.+.+...|...
T Consensus 81 ~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 81 LFLDPSGDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred EEECCCCCCchhhccCCCCccccccCCCHHHH
Confidence 9996 99998764 556666555555544
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.63 E-value=3.7e-15 Score=106.36 Aligned_cols=86 Identities=15% Similarity=0.269 Sum_probs=77.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC--CCcEEEEEEC--CEEEE
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK--TVPLFHFYKN--GALVE 192 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~--~~Pt~~~~~~--G~~v~ 192 (217)
++++++.||++||++|..+.|.++++++++.+ ++.|+.||+ +++..++..|++. ++|+++++++ |+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~----~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDA----DDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEch----HhhHHHHHHcCCChhhCCEEEEEecccccccC
Confidence 68999999999999999999999999999987 699999999 8889999999999 9999999987 66665
Q ss_pred EeCC-CCHHHHHHHHHHh
Q 027890 193 AFPT-RDKERIDAAILKY 209 (217)
Q Consensus 193 ~~~~-~~~~~l~~~l~~~ 209 (217)
..++ .+.+.|.+||.++
T Consensus 85 ~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 85 MPEEELTAESLEEFVEDF 102 (103)
T ss_pred CCccccCHHHHHHHHHhh
Confidence 5555 4899999999875
No 64
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.62 E-value=8.6e-15 Score=100.14 Aligned_cols=81 Identities=27% Similarity=0.301 Sum_probs=69.6
Q ss_pred EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCH
Q 027890 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDK 199 (217)
Q Consensus 120 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~ 199 (217)
.+..||++||++|+.+.|.++++++.+.. .+.++.||+ ++.++++++|++.++||+++ +|+. ...|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~----~~~~~~~~~~~v~~vPt~~~--~g~~-~~~G~~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINV----MENPQKAMEYGIMAVPAIVI--NGDV-EFIGAPTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeC----ccCHHHHHHcCCccCCEEEE--CCEE-EEecCCCH
Confidence 36689999999999999999999998865 589999999 88889999999999999986 7763 33366799
Q ss_pred HHHHHHHHHhc
Q 027890 200 ERIDAAILKYT 210 (217)
Q Consensus 200 ~~l~~~l~~~~ 210 (217)
++|.++|++.+
T Consensus 72 ~~l~~~l~~~~ 82 (82)
T TIGR00411 72 EELVEAIKKRL 82 (82)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 65
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.62 E-value=1e-15 Score=125.87 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=92.9
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCC--CCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQE--APVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~--~~v~~~~vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+.+|++.++.. +..|+|.|||+||+.++.+.|.|++.++.+.+.. .++++++||| +.+..++.+|.|..|
T Consensus 2 t~~N~~~il~s----~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc----d~e~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 2 TSENIDSILDS----NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC----DKEDDIADKYHINKY 73 (375)
T ss_pred ccccHHHhhcc----ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc----chhhHHhhhhccccC
Confidence 45788888887 7999999999999999999999999988765433 4799999999 999999999999999
Q ss_pred cEEEEEECCEEEEEe--CCCCHHHHHHHHHHhccCCC
Q 027890 180 PLFHFYKNGALVEAF--PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 180 Pt~~~~~~G~~v~~~--~~~~~~~l~~~l~~~~~~~~ 214 (217)
||+.+|++|....+- |.++.+.|.+||++.++.+.
T Consensus 74 PTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 74 PTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ceeeeeeccchhhhhhccchhHHHHHHHHHHHhccHH
Confidence 999999999988743 77999999999999887653
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-15 Score=134.31 Aligned_cols=104 Identities=25% Similarity=0.403 Sum_probs=86.3
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
|..+ -.++|++++... +|-|||.||||||+||+++.|.|++|++.|.+ ..+++++++|.+. +. .....+
T Consensus 368 Vkvv-Vgknfd~iv~de---~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTa----Nd--~~~~~~ 436 (493)
T KOG0190|consen 368 VKVV-VGKNFDDIVLDE---GKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATA----ND--VPSLKV 436 (493)
T ss_pred eEEE-eecCHHHHhhcc---ccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEecccc----cc--Cccccc
Confidence 4444 678999998873 89999999999999999999999999999998 7789999999943 22 223467
Q ss_pred CCCcEEEEEECCE---EEEEeCCCCHHHHHHHHHHhcc
Q 027890 177 KTVPLFHFYKNGA---LVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 177 ~~~Pt~~~~~~G~---~v~~~~~~~~~~l~~~l~~~~~ 211 (217)
.++||+++|+.|. ++.+-|.++.++|..+|.+...
T Consensus 437 ~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 437 DGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 7899999998543 5555588999999999998865
No 67
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.60 E-value=9.1e-15 Score=108.20 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=60.9
Q ss_pred HHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHH--------HcCCCC
Q 027890 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE--------RLKIKT 178 (217)
Q Consensus 110 l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~--------~~~I~~ 178 (217)
++.|++++|+|+|+|||+||++|+.|.+. +. ++.+.+.. ++.++++|. ++.+++.+ .|++.+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~----~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDR----EERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeC----CcCcHHHHHHHHHHHHhcCCCC
Confidence 34444459999999999999999999874 32 45555443 599999999 55555544 368999
Q ss_pred CcEEEEEE-CCEEEEEeCC
Q 027890 179 VPLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 179 ~Pt~~~~~-~G~~v~~~~~ 196 (217)
+|+++|+. +|+++...++
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred CCEEEEECCCCCEEeeeee
Confidence 99999996 8999977643
No 68
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.57 E-value=1.7e-14 Score=128.41 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=90.8
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
+.+..+ +.++|++.+.. .++.++|+|||+||++|+.+.|.++++++.+.+....+.|+++|+ +.+. +.. +
T Consensus 346 ~~v~~l-~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~----~~n~-~~~-~ 415 (462)
T TIGR01130 346 GPVKVL-VGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDA----TAND-VPP-F 415 (462)
T ss_pred CccEEe-eCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEEC----CCCc-cCC-C
Confidence 345555 78999998866 389999999999999999999999999999876334699999999 4432 334 9
Q ss_pred CCCCCcEEEEEECCEE---EEEeCCCCHHHHHHHHHHhccCCCC
Q 027890 175 KIKTVPLFHFYKNGAL---VEAFPTRDKERIDAAILKYTSTTSN 215 (217)
Q Consensus 175 ~I~~~Pt~~~~~~G~~---v~~~~~~~~~~l~~~l~~~~~~~~~ 215 (217)
+|.++||+++|++|.. +...|+.+.+.|.+||.++.....+
T Consensus 416 ~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 416 EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 9999999999997755 3444789999999999999876544
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.55 E-value=6e-14 Score=113.55 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=74.1
Q ss_pred CCeEEEEEEC---CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE-
Q 027890 117 GSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE- 192 (217)
Q Consensus 117 ~k~vlV~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~- 192 (217)
+...++.|++ +||++|+.+.|.++++++.+... .+.++.+|. ++.++++++|+|.++||+++|++|+.+.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~--~i~~v~vd~----~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~ 92 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL--KLEIYDFDT----PEDKEEAEKYGVERVPTTIILEEGKDGGI 92 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc--eEEEEecCC----cccHHHHHHcCCCccCEEEEEeCCeeeEE
Confidence 4455666888 99999999999999999988541 355667776 7899999999999999999999999874
Q ss_pred Ee-CCCCHHHHHHHHHHhcc
Q 027890 193 AF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 193 ~~-~~~~~~~l~~~l~~~~~ 211 (217)
++ |..+.++|.+||+.+++
T Consensus 93 ~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 93 RYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred EEeecCCHHHHHHHHHHHHH
Confidence 66 66788899999998854
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.55 E-value=2.2e-14 Score=103.91 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=65.8
Q ss_pred hcCCCeEEEEEECCCChhhHHhHHHHHHH---HHHhCCCCCCEEEEEEEccCCc----------------chhHHHHHHc
Q 027890 114 KETGSLVVVDFYRTSCGSCKYIEQGFSKL---CKGSGDQEAPVIFLKHNVIDEY----------------DEQSEVAERL 174 (217)
Q Consensus 114 ~~~~k~vlV~F~a~wC~~C~~~~p~l~~l---~~~~~~~~~~v~~~~vd~~d~~----------------~~~~~l~~~~ 174 (217)
+.++++++|.||++||++|+.+.+.+... ...+.. ++.++.+++.+.. ..+.+++++|
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY 78 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc
Confidence 34689999999999999999999998864 333433 4788888874321 1235799999
Q ss_pred CCCCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHH
Q 027890 175 KIKTVPLFHFYK-NGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 175 ~I~~~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l 206 (217)
+|.++||+++++ +|+.+..+ |..++++|.++|
T Consensus 79 ~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 79 GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp T--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999996 89999877 678999998875
No 71
>PHA02125 thioredoxin-like protein
Probab=99.53 E-value=8.3e-14 Score=94.19 Aligned_cols=70 Identities=16% Similarity=0.385 Sum_probs=57.8
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCC--C
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTR--D 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~--~ 198 (217)
+++||++||++|+.+.|.|+++. +.+++||. +...+++++|+|.++||++ +|+.+.++.|. +
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~----~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDT----DEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeC----CCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCc
Confidence 78999999999999999987642 46889998 8889999999999999987 78888888554 4
Q ss_pred HHHHHHHH
Q 027890 199 KERIDAAI 206 (217)
Q Consensus 199 ~~~l~~~l 206 (217)
..+|++.|
T Consensus 66 ~~~l~~~~ 73 (75)
T PHA02125 66 VAELKEKL 73 (75)
T ss_pred HHHHHHHh
Confidence 46666544
No 72
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.51 E-value=2.1e-13 Score=107.85 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-------------------chhHHHHHHcCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------------------DEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~-------------------~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+.+.|.+.++.++ ++.++.|+..++. |....+...|++.
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 89999999999999999999999998653 3777888764321 2223456789999
Q ss_pred CCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 178 TVPLFHFYK-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 ~~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
++|++++++ +|+++..+ |..+.++|+++|+.++.
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 999888885 99999888 66888888888887763
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.49 E-value=3.8e-13 Score=108.90 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=70.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
+..+++.||++||++|+.+.+.+++++..+. ++.+..+|. +..++++.+|+|.++||++++++|+. ..|.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~----~~~~~~~~~~~V~~vPtl~i~~~~~~--~~G~ 202 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEA----NENPDLAEKYGVMSVPKIVINKGVEE--FVGA 202 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeC----CCCHHHHHHhCCccCCEEEEecCCEE--EECC
Confidence 3445555999999999999999999988754 499999999 88999999999999999999988874 4477
Q ss_pred CCHHHHHHHHHH
Q 027890 197 RDKERIDAAILK 208 (217)
Q Consensus 197 ~~~~~l~~~l~~ 208 (217)
.+.++|.++|..
T Consensus 203 ~~~~~l~~~l~~ 214 (215)
T TIGR02187 203 YPEEQFLEYILS 214 (215)
T ss_pred CCHHHHHHHHHh
Confidence 888999999875
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.49 E-value=2.1e-13 Score=104.48 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=65.1
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc--------chhHHHH-HHc---CCCCCcEEEE
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------DEQSEVA-ERL---KIKTVPLFHF 184 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~--------~~~~~l~-~~~---~I~~~Pt~~~ 184 (217)
++..+|+|||+||++|+.+.|.++++++++. +.++.|++.+.. +...+.. ..| ++.++||+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 5677999999999999999999999999874 445555552210 0112333 445 8899999999
Q ss_pred EE-CCEE-EEEe-CCCCHHHHHHHHHHhc
Q 027890 185 YK-NGAL-VEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 185 ~~-~G~~-v~~~-~~~~~~~l~~~l~~~~ 210 (217)
++ +|+. .... |..+.++|++.|.+.+
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 96 6665 4444 7789999999888753
No 75
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.49 E-value=7.7e-13 Score=96.54 Aligned_cols=103 Identities=11% Similarity=0.210 Sum_probs=85.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+|+++++.|++++|+++|+|+++||++|+.|... |. ++.+.+.. ++.++++|+.+ .+...++..|++.++|
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~--~e~~~~~~~~~~~~~P 78 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDS--SEGQRFLQSYKVDKYP 78 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCC--ccHHHHHHHhCccCCC
Confidence 46888999998889999999999999999999764 32 34444444 58899999843 4677899999999999
Q ss_pred EEEEEE--CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 181 LFHFYK--NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 181 t~~~~~--~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
+++++. +|+.+.++ |..+++++...|++...
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 999995 69999998 66899999999988753
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.49 E-value=3.1e-13 Score=102.62 Aligned_cols=78 Identities=12% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCC-----CCCEEEEEEEccCCc---------------------chhHHH
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNVIDEY---------------------DEQSEV 170 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~v~~~~vd~~d~~---------------------~~~~~l 170 (217)
+++++|+|||+||++|+.+.|.|.++.+++.+. ..++.++.|+...+. +....+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 899999999999999999999999998876542 235888888863220 112368
Q ss_pred HHHcCCCCCcEEEEEE-CCEEEEEe
Q 027890 171 AERLKIKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 171 ~~~~~I~~~Pt~~~~~-~G~~v~~~ 194 (217)
+++|++.++|++++++ +|+++.+-
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEeeC
Confidence 8999999999999996 99999774
No 77
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.8e-13 Score=119.77 Aligned_cols=102 Identities=25% Similarity=0.438 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
..+|...+.. .+++++|+||+|||++|+.+.|.|.+++..+.+ .+.+..||+ +.+.++|.+|+|.++||+
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~----~~~~~~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDC----DEHKDLCEKYGIQGFPTL 105 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCc----hhhHHHHHhcCCccCcEE
Confidence 3444444433 289999999999999999999999999999987 699999999 999999999999999999
Q ss_pred EEEECC-EEEEEeCCCCHHHHHHHHHHhccCCC
Q 027890 183 HFYKNG-ALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 183 ~~~~~G-~~v~~~~~~~~~~l~~~l~~~~~~~~ 214 (217)
.+|..| +.+...+..+.+.+..++...+....
T Consensus 106 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 106 KVFRPGKKPIDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred EEEcCCCceeeccCcccHHHHHHHHHHhhcccc
Confidence 999988 55565678999999999998876654
No 78
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.48 E-value=4.2e-13 Score=105.06 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------------------cchhHHHHHHcCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-------------------~~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+.+.|.++++.+. ++.++.|+..+. .|....+.+.|++.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 79999999999999999999999988753 366777775321 13344677889999
Q ss_pred CCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 178 TVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 ~~Pt~~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
++|+++++ ++|+++..+ |..+.++++++|++++.
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99987777 499999888 56899999999998874
No 79
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.48 E-value=8.1e-13 Score=110.40 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-------chhHHHHHHcCCCCCcEEEEEEC-
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------DEQSEVAERLKIKTVPLFHFYKN- 187 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~-------~~~~~l~~~~~I~~~Pt~~~~~~- 187 (217)
.++++||+||++||++|+.+.|.|.++++++. +.++.|++.... ..+..++++|||.++|++++++.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 47899999999999999999999999999985 455555552110 12357899999999999999984
Q ss_pred CEEEEEe--CCCCHHHHHHHHHHhccC
Q 027890 188 GALVEAF--PTRDKERIDAAILKYTST 212 (217)
Q Consensus 188 G~~v~~~--~~~~~~~l~~~l~~~~~~ 212 (217)
|+.+... |..+.++|.+.|......
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAHP 266 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 6666554 668999999999877653
No 80
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.47 E-value=4.6e-13 Score=120.19 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC------------------------CcchhHHHHH
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID------------------------EYDEQSEVAE 172 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d------------------------~~~~~~~l~~ 172 (217)
+++|||+|||+||++|+.+.|.|+++.+++... ++.++.|.... ..|....+++
T Consensus 56 GKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 56 DKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred CCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 899999999999999999999999999988632 36666554310 0145678999
Q ss_pred HcCCCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHH
Q 027890 173 RLKIKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILK 208 (217)
Q Consensus 173 ~~~I~~~Pt~~~~-~~G~~v~~~-~~~~~~~l~~~l~~ 208 (217)
.|+|.++||++++ ++|+++..+ |..+.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999877 599999998 66899999999983
No 81
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.46 E-value=4.2e-13 Score=100.06 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=62.1
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc--------------------chhHHHHHHcCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------------------DEQSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~--------------------~~~~~l~~~~~I 176 (217)
++++||+||++||++|+.+.|.+.++.+++.+...++.++.|++..+. +....++++|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 789999999999999999999999998888653235667766663210 123578899999
Q ss_pred CCCcEEEEEE-CCEEEEEe
Q 027890 177 KTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 177 ~~~Pt~~~~~-~G~~v~~~ 194 (217)
.++|++++++ +|+++.+.
T Consensus 98 ~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 98 EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCEEEEECCCCCEEccc
Confidence 9999999996 99988764
No 82
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.46 E-value=1.1e-12 Score=92.29 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=58.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHcC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERLK 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---------------------~~~~~~l~~~~~ 175 (217)
||+++|+|||+||++|+...|.+.++.+++.+ ..++.++.|....+ .+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 58999999999999999999999999999994 44799988887432 123567899999
Q ss_pred CCCCcEEEEEE-CCEE
Q 027890 176 IKTVPLFHFYK-NGAL 190 (217)
Q Consensus 176 I~~~Pt~~~~~-~G~~ 190 (217)
|.++|++++++ +|++
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 99999999997 7763
No 83
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.46 E-value=1.3e-12 Score=88.65 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=58.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC-CCH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT-RDK 199 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~-~~~ 199 (217)
.|+||++||++|+.+.|.++++++++.. .+.+++||- .+.+.+|++.++|++++ ||+.+ ..|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~~-------~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVTD-------MNEILEAGVTATPGVAV--DGELV-IMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeCC-------HHHHHHcCCCcCCEEEE--CCEEE-EEeccCCH
Confidence 3789999999999999999999999876 588877762 22377899999999999 88887 3232 455
Q ss_pred HHHHHHH
Q 027890 200 ERIDAAI 206 (217)
Q Consensus 200 ~~l~~~l 206 (217)
++|.++|
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7887765
No 84
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.44 E-value=6.7e-13 Score=99.27 Aligned_cols=78 Identities=13% Similarity=0.235 Sum_probs=61.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc---------------------chhHHHHHHcC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---------------------DEQSEVAERLK 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~---------------------~~~~~l~~~~~ 175 (217)
+++++|+||++||++|+.+.|.+.++.+++.+...++.++.|++..+. .....+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 899999999999999999999999999888753235777777663211 01246778899
Q ss_pred CCCCcEEEEEE-CCEEEEEe
Q 027890 176 IKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 176 I~~~Pt~~~~~-~G~~v~~~ 194 (217)
|.++|++++++ +|+++.+.
T Consensus 97 v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 97 VEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCEEEEECCCCCEEchh
Confidence 99999999996 89888765
No 85
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=8.8e-14 Score=123.10 Aligned_cols=86 Identities=19% Similarity=0.376 Sum_probs=78.3
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
+.+.++ +.++|+.++... .+..+|+||++|||+|+.+.|+|.++++.+..+.+-+.++.|||-+ +.+..+|++|
T Consensus 39 D~ii~L-d~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--~~N~~lCRef 112 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--EENVKLCREF 112 (606)
T ss_pred CCeEEe-ehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--hhhhhhHhhc
Confidence 567777 899999999874 5789999999999999999999999999998887889999999966 7889999999
Q ss_pred CCCCCcEEEEEE
Q 027890 175 KIKTVPLFHFYK 186 (217)
Q Consensus 175 ~I~~~Pt~~~~~ 186 (217)
+|.++|++.+|.
T Consensus 113 ~V~~~Ptlryf~ 124 (606)
T KOG1731|consen 113 SVSGYPTLRYFP 124 (606)
T ss_pred CCCCCceeeecC
Confidence 999999999995
No 86
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.41 E-value=4.1e-12 Score=98.89 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc------------------chhHHHHHHcCCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------DEQSEVAERLKIKT 178 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~------------------~~~~~l~~~~~I~~ 178 (217)
+++++|+||++||++|+...+.+.++.+++.+. ++.++.|++.+.. +....+++.|++.+
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 789999999999999999999999999998752 4788888773321 23568899999999
Q ss_pred CcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHh
Q 027890 179 VPLFHFYK-NGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 179 ~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l~~~ 209 (217)
+|++++++ +|+++... |..+.+++.++|++.
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999996 89988776 668999999988864
No 87
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.41 E-value=2.1e-12 Score=95.73 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------------------cchhHHHHHHcCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-------------------~~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+.+.|.++++.+.+. +.++.|+..+. .|....+++.|++.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 7899999999999999999999999987752 66666664221 14456788999999
Q ss_pred CCcEEEEEE-CCEEEEEe-CCCCHHHH
Q 027890 178 TVPLFHFYK-NGALVEAF-PTRDKERI 202 (217)
Q Consensus 178 ~~Pt~~~~~-~G~~v~~~-~~~~~~~l 202 (217)
++|++++++ +|+++.++ |..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 999877774 99999888 55666654
No 88
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.39 E-value=3e-12 Score=84.31 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=53.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
++.||++||++|+.+.+.++++++.+. ++.+..+|+ +++++++.+|++.++|++++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~----~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDA----AEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEc----ccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 678999999999999999999987654 499999999 88889999999999999865 56544
No 89
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.38 E-value=1.8e-12 Score=115.89 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=88.9
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHH-H--HHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS-K--LCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~-~--l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
+.+.+.+++++++++++ +|+|+|+|||+||-.|+.+++..- + ...+.+ +++.+++|++.++.++.++.++|
T Consensus 457 q~~s~~~~L~~~la~~~--~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~----~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 457 QPISPLAELDQALAEAK--AKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ----DVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred hccCCHHHHHHHHHhCC--CCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC----CeEEEEeeecCCCHHHHHHHHHc
Confidence 45556679999999854 469999999999999999998744 2 233344 49999999998888999999999
Q ss_pred CCCCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 175 KIKTVPLFHFYK-NGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I~~~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
++-+.|++++|. +|++.... +..+.+.+.+++++..
T Consensus 531 ~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999999997 78776667 6689999999998753
No 90
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.37 E-value=6.9e-13 Score=98.42 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHH---HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 100 i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
|....+|+++++.+++++|+++|+|+++||++|+.|...+- ++.+.... ++..+.++.... +.+.. ..+
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~t-d~~~~---~~g- 77 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETT-DKNLS---PDG- 77 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccC-CCCcC---ccC-
Confidence 44556899999999999999999999999999999988643 23333332 467667776211 11211 234
Q ss_pred CCCcEEEEEE-CCEEEEEe
Q 027890 177 KTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 177 ~~~Pt~~~~~-~G~~v~~~ 194 (217)
.++||++|++ +|+++.++
T Consensus 78 ~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 78 QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred cccCeEEEECCCCCCcccc
Confidence 6899999996 88888776
No 91
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.37 E-value=1.7e-11 Score=91.10 Aligned_cols=103 Identities=8% Similarity=0.044 Sum_probs=85.7
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECC--CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRT--SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+..+++..+.. ....+|.|-.+ -++.+....-.|++++++|.+ .++.|++||+ |.+++++.+|||.++
T Consensus 23 ~~~~~~~~~~~----~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDi----D~~~~LA~~fgV~si 92 (132)
T PRK11509 23 SESRLDDWLTQ----APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADL----EQSEAIGDRFGVFRF 92 (132)
T ss_pred ccccHHHHHhC----CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEEC----CCCHHHHHHcCCccC
Confidence 44777777765 45555555433 467788888889999999973 1599999999 999999999999999
Q ss_pred cEEEEEECCEEEEEe-CCCCHHHHHHHHHHhccCCC
Q 027890 180 PLFHFYKNGALVEAF-PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 180 Pt~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~~~~~ 214 (217)
||++||++|+.+..+ |..+.+++.++|.+++....
T Consensus 93 PTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 999999999999999 55899999999999987754
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.36 E-value=5.4e-12 Score=122.60 Aligned_cols=93 Identities=22% Similarity=0.363 Sum_probs=76.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc--CC---------------------cchhHHHHHH
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI--DE---------------------YDEQSEVAER 173 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~--d~---------------------~~~~~~l~~~ 173 (217)
++++||+|||+||++|+.+.|.|+++.++|.+. ++.++.|... |+ .|....+.++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 899999999999999999999999999998752 4777777421 11 1335578899
Q ss_pred cCCCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 174 LKIKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 174 ~~I~~~Pt~~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
|+|.++|+++++ ++|+++.++ |....++|.++|++.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 999999999999 599999998 55788999999988754
No 93
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.7e-12 Score=110.91 Aligned_cols=108 Identities=24% Similarity=0.381 Sum_probs=93.5
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+..+ +.++|+..+... +..++|.||+|||++|+.+.|.|++++..+.. ...+.+..+|+ +.+..++.+++|
T Consensus 146 v~~l-~~~~~~~~~~~~---~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~----~~~~~~~~~~~v 216 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKDS---DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDA----TVHKSLASRLEV 216 (383)
T ss_pred eEEc-cccchhhhhhcc---CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeecc----chHHHHhhhhcc
Confidence 5555 778888888774 78999999999999999999999999998864 45799999999 789999999999
Q ss_pred CCCcEEEEEECCEE-EEEe-CCCCHHHHHHHHHHhccCC
Q 027890 177 KTVPLFHFYKNGAL-VEAF-PTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 177 ~~~Pt~~~~~~G~~-v~~~-~~~~~~~l~~~l~~~~~~~ 213 (217)
.++||+++|.+|.. .... +.++.+.|..|+.+.....
T Consensus 217 ~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 99999999987776 4444 7799999999999988763
No 94
>smart00594 UAS UAS domain.
Probab=99.35 E-value=6.4e-12 Score=92.87 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=78.8
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH-H--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF-S--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l-~--~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~ 178 (217)
-...|+++++.+++++|+++|+|+++||++|+.+...+ . ++.+.+.. ++.+..+|+.+ .+...++.+|++.+
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~--~eg~~l~~~~~~~~ 86 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDT--SEGQRVSQFYKLDS 86 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCC--hhHHHHHHhcCcCC
Confidence 44678899999888899999999999999999988652 2 23334433 58898999854 45678999999999
Q ss_pred CcEEEEEE-CC-----EEEEEe-CCCCHHHHHHHH
Q 027890 179 VPLFHFYK-NG-----ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 179 ~Pt~~~~~-~G-----~~v~~~-~~~~~~~l~~~l 206 (217)
+|+++++. +| +.+.++ |..++++|...|
T Consensus 87 ~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 87 FPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999995 54 345666 668899998876
No 95
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.35 E-value=2e-11 Score=85.25 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
+..-+..|+++||++|....+.++++++.++. +.+..+|+ +..++++.+|+|.++|++++ ||+.+.. |.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~----~~~~e~a~~~~V~~vPt~vi--dG~~~~~-G~ 80 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDG----ALFQDEVEERGIMSVPAIFL--NGELFGF-GR 80 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEh----HhCHHHHHHcCCccCCEEEE--CCEEEEe-CC
Confidence 56678889999999999999999999988764 99999999 88999999999999999964 8887764 44
Q ss_pred CCHHHH
Q 027890 197 RDKERI 202 (217)
Q Consensus 197 ~~~~~l 202 (217)
.+.+++
T Consensus 81 ~~~~e~ 86 (89)
T cd03026 81 MTLEEI 86 (89)
T ss_pred CCHHHH
Confidence 455554
No 96
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.35 E-value=2.2e-12 Score=88.60 Aligned_cols=75 Identities=24% Similarity=0.462 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+|+++++.|++++++++|+|+++||++|+.|...+ .++.+.+.. ++.++++|. +.........+ .++|
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~----~~~~~~~~~~~-~~~P 75 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDV----DDEDPNAQFDR-QGYP 75 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEET----TTHHHHHHHHH-CSSS
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEc----CCCChhHHhCC-ccCC
Confidence 468888888888899999999999999999999876 334443333 599999999 33332222112 6799
Q ss_pred EEEEEE
Q 027890 181 LFHFYK 186 (217)
Q Consensus 181 t~~~~~ 186 (217)
+++|++
T Consensus 76 ~~~~ld 81 (82)
T PF13899_consen 76 TFFFLD 81 (82)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999985
No 97
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.32 E-value=2.8e-11 Score=94.70 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=68.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC--------c-chhHHHHHHcCC--CCCcEEEEEE-CC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE--------Y-DEQSEVAERLKI--KTVPLFHFYK-NG 188 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~--------~-~~~~~l~~~~~I--~~~Pt~~~~~-~G 188 (217)
+|.||++||++|+++.|.+.++++++. +.++.|++.+. . +....+...|++ .++|+.++++ +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 777999999999999999999999984 56666665322 1 133457788995 6999999995 89
Q ss_pred EEEE--EeCCCCHHHHHHHHHHhccC
Q 027890 189 ALVE--AFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 189 ~~v~--~~~~~~~~~l~~~l~~~~~~ 212 (217)
+++. ..|..+.++|++.|.+.+..
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 8864 34889999999999887643
No 98
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.30 E-value=1.9e-11 Score=89.84 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=63.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----------------CcchhHHHHHHcCCCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----------------EYDEQSEVAERLKIKTV 179 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-----------------~~~~~~~l~~~~~I~~~ 179 (217)
+++++|+||++||++|+.+.|.+.++.+.+. +..+.+|-.+ -.+.+..++++|+|.++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 94 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT 94 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC-----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence 6899999999999999999999999987742 3333333210 01345679999999999
Q ss_pred cEEEEEECCEEEEEe-CCCCHHHHHHH
Q 027890 180 PLFHFYKNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 180 Pt~~~~~~G~~v~~~-~~~~~~~l~~~ 205 (217)
|+++++++|.++... |..+.+.|.+.
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 999999744466666 55888888654
No 99
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.28 E-value=3.3e-11 Score=89.27 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----C------------------cchhHHHHHH
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----E------------------YDEQSEVAER 173 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-----~------------------~~~~~~l~~~ 173 (217)
+++++|+||++||++|+...|.|.++.+++.+. ++.++.|+..+ . .|....+.+.
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 799999999999999999999999999999753 57887775421 0 1344567888
Q ss_pred cCCCCCcEEEEEE-CCEEEEEeCC
Q 027890 174 LKIKTVPLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 174 ~~I~~~Pt~~~~~-~G~~v~~~~~ 196 (217)
|++.++|++++++ +|+++..+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 9999999999995 8999888743
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.28 E-value=2.4e-11 Score=88.06 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=54.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch-----------------hHHHHHHcCCCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-----------------QSEVAERLKIKTV 179 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~-----------------~~~l~~~~~I~~~ 179 (217)
+++++|+||++||++|+.+.|.++++.+.+.+ ++.++.+. .+..+. ..++.++|++.++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 78999999999999999999999999888755 46666552 111111 2356677788888
Q ss_pred cEEEEEE-CCEEEEE
Q 027890 180 PLFHFYK-NGALVEA 193 (217)
Q Consensus 180 Pt~~~~~-~G~~v~~ 193 (217)
|++++++ +|+++.+
T Consensus 97 P~~~vid~~G~v~~~ 111 (114)
T cd02967 97 PYAVLLDEAGVIAAK 111 (114)
T ss_pred CeEEEECCCCeEEec
Confidence 9988886 7877653
No 101
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.27 E-value=3.7e-11 Score=85.90 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=63.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------------------cchhHHHHHHcCCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-------------------~~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+...+.+.++.+++.. .++.++.|++..+ .+....+.+.|++.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 78999999999999999999999999999852 2589999998221 01127789999999
Q ss_pred CCcEEEEEE-CCEEEEEeC
Q 027890 178 TVPLFHFYK-NGALVEAFP 195 (217)
Q Consensus 178 ~~Pt~~~~~-~G~~v~~~~ 195 (217)
++|++++++ +|+++.++.
T Consensus 97 ~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ccceEEEECCCCcEEEEec
Confidence 999999996 898887763
No 102
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.27 E-value=7.6e-11 Score=96.37 Aligned_cols=93 Identities=23% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------CcchhHHHH-HHcCC------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------EYDEQSEVA-ERLKI------------ 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-------~~~~~~~l~-~~~~I------------ 176 (217)
++++||.||++||++|+...|.|.++.+++.+. ++.++.|++.+ ..++...++ +++++
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 799999999999999999999999999999753 58888888631 111222322 23221
Q ss_pred ----------------------CCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 177 ----------------------KTVPLFHFYK-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 177 ----------------------~~~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
...|+.++++ +|+++.++ |..++++|++.|++++.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2358888885 99999998 66889999999998874
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.27 E-value=6.3e-11 Score=94.81 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc-------CCcchhHHHHHHcCCC------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI-------DEYDEQSEVAERLKIK------------ 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~-------d~~~~~~~l~~~~~I~------------ 177 (217)
++++||.|||+||++|+...|.|.++.+++.+. ++.++.|++. +..+....+++++++.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 799999999999999999999999999998753 5888888762 1123344556665541
Q ss_pred ------------------------CCc---EEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhccC
Q 027890 178 ------------------------TVP---LFHFY-KNGALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 178 ------------------------~~P---t~~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~~~ 212 (217)
.+| +.+++ ++|+++.++ +..+.++|++.|++++..
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 122 45566 599999998 457888899999887754
No 104
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.26 E-value=5.5e-11 Score=90.07 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=63.5
Q ss_pred CCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC-
Q 027890 117 GSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK- 177 (217)
Q Consensus 117 ~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~~~l~~~~~I~- 177 (217)
+++++|+||++ ||++|+...|.+.++.+.+... ++.++.|...++ .|....+.++|++.
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 89999999999 9999999999999998886653 467777765332 24556788999988
Q ss_pred --------CCcEEEEEE-CCEEEEEeCC
Q 027890 178 --------TVPLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 178 --------~~Pt~~~~~-~G~~v~~~~~ 196 (217)
++|++++++ +|+++....+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeC
Confidence 999999986 9999988833
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.23 E-value=1.4e-10 Score=92.09 Aligned_cols=90 Identities=13% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC--------------CcchhHHHHHHcCCCCCcEE
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID--------------EYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d--------------~~~~~~~l~~~~~I~~~Pt~ 182 (217)
+++++|+||++||++|+.+.|.+.++.+++.. ++.++..|-.+ ......++.+.|++.++|+.
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~---~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAEET---DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhcCC---cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 79999999999999999999999998876532 45555422100 01124577889999999999
Q ss_pred EEEE-CCEEEEEeCCCCHHHHHHHHHHh
Q 027890 183 HFYK-NGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~-~G~~v~~~~~~~~~~l~~~l~~~ 209 (217)
++++ +|+++.+......+.+++.++..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 8885 89888764334667777777654
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.19 E-value=1.3e-10 Score=91.40 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=64.2
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEE------EEEEccCC-------------------------c
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIF------LKHNVIDE-------------------------Y 164 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~------~~vd~~d~-------------------------~ 164 (217)
.+|..+|+|||+||++|+..+|.++++.++ ++.+ +-||..|. .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 389999999999999999999999999654 1333 45555331 1
Q ss_pred chhHHHHHHcCCCCCcEE-EEEE-CCEEEEEe-CCCCHHHHHHHH
Q 027890 165 DEQSEVAERLKIKTVPLF-HFYK-NGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 165 ~~~~~l~~~~~I~~~Pt~-~~~~-~G~~v~~~-~~~~~~~l~~~l 206 (217)
|....+...|++.++|+. ++++ +|+++... |..+.+++.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 234456789999999887 6774 99999998 667888776633
No 107
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.14 E-value=8.4e-10 Score=84.53 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=68.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc-------CCcchhHHHHHH-cCC------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI-------DEYDEQSEVAER-LKI------------ 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~-------d~~~~~~~l~~~-~~I------------ 176 (217)
++++||.|||+||++|+...|.+.++.+++.+. ++.++.|++. +..+.....+++ +++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 789999999999999999999999999998753 5888888851 111223333432 222
Q ss_pred --------------CCCcE----EEEE-ECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 177 --------------KTVPL----FHFY-KNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 177 --------------~~~Pt----~~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
.++|+ .+++ ++|+++..+ +..+.++|.+.|++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 24785 5666 599999998 6688999999887653
No 108
>PLN02412 probable glutathione peroxidase
Probab=99.13 E-value=9e-10 Score=85.73 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=70.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----Ccchh----HHHHHHcC-------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EYDEQ----SEVAERLK------------- 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d----~~~~~----~~l~~~~~------------- 175 (217)
++++||.||++||++|+...|.|.++.+++.+. ++.++.|++.+ +.+.. ..+.++++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 799999999999999999999999999999863 58888887631 00111 11122221
Q ss_pred ---------------------CCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhccC
Q 027890 176 ---------------------IKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 176 ---------------------I~~~Pt~~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~~~ 212 (217)
|...|+.+++ ++|+++.++ |..+.++|+..|++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3345888888 499999998 668899999999988764
No 109
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.09 E-value=4.9e-10 Score=93.14 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=82.0
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
.+.+.+|.+.++|-+++.... .+..|||+||-+.++.|..|...|..|+.+|+. +.|++|.. ...+ +..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~-~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a----~~~~-~~~~ 193 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKES-KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRA----SKCP-ASEN 193 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSS-TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEE----CGCC-TTTT
T ss_pred CceEEEccChhhHHHHHhccC-CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEeh----hccC-cccC
Confidence 578899988899999887642 256899999999999999999999999999997 99999998 5544 7788
Q ss_pred cCCCCCcEEEEEECCEEEEEeC------C--CCHHHHHHHHHHh
Q 027890 174 LKIKTVPLFHFYKNGALVEAFP------T--RDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~~------~--~~~~~l~~~l~~~ 209 (217)
|.+..+||+++|++|..+..+. | ....+|+.+|.++
T Consensus 194 f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp S-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999999999999872 2 4567888888866
No 110
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.08 E-value=3.9e-10 Score=87.67 Aligned_cols=89 Identities=27% Similarity=0.474 Sum_probs=83.7
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
.+.+.+|.++.+|-+.... ..-||++||-+.-..|+.|...|+.+++.+-+ ..|++||+ +..+.|+.+
T Consensus 65 hG~y~ev~~Ekdf~~~~~k----S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvna----e~~PFlv~k 132 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKK----SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNA----EKAPFLVTK 132 (211)
T ss_pred CceEEEeccHHHHHHHhhc----CceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEec----ccCceeeee
Confidence 6788999999999988876 68899999999999999999999999999987 89999999 999999999
Q ss_pred cCCCCCcEEEEEECCEEEEEe
Q 027890 174 LKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~ 194 (217)
++|.-+|++.+|++|+.+.++
T Consensus 133 L~IkVLP~v~l~k~g~~~D~i 153 (211)
T KOG1672|consen 133 LNIKVLPTVALFKNGKTVDYV 153 (211)
T ss_pred eeeeEeeeEEEEEcCEEEEEE
Confidence 999999999999999999887
No 111
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.08 E-value=2.8e-09 Score=83.00 Aligned_cols=96 Identities=27% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------C------------------cchhHHHH
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------E------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-------~------------------~~~~~~l~ 171 (217)
++++||+||++||+.|....+.+.++.+++.+. ++.|+.|...+ . .|....++
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 789999999999999999999999999998742 58888887632 1 12344678
Q ss_pred HHcCCCCCcEEEEEE-CCEEEEEeC----------CCCHHHHHHHHHHhccCCC
Q 027890 172 ERLKIKTVPLFHFYK-NGALVEAFP----------TRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 172 ~~~~I~~~Pt~~~~~-~G~~v~~~~----------~~~~~~l~~~l~~~~~~~~ 214 (217)
+.|++..+|++++++ +|+++.... ..+.+++.+.|+..+...+
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 899999999999996 888876631 1356889999998876543
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.07 E-value=1.6e-09 Score=82.89 Aligned_cols=86 Identities=21% Similarity=0.385 Sum_probs=62.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------CcchhHHHHHH-cC-------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------EYDEQSEVAER-LK------------- 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-------~~~~~~~l~~~-~~------------- 175 (217)
+++++|+||++||+ |+...|.|.++.+++.+. ++.++.|++.+ ..+....++++ ++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~ 98 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNG 98 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccC
Confidence 79999999999999 999999999999999743 58888886521 11222334432 33
Q ss_pred ----------CCCCc-----------EEEEE-ECCEEEEEe-CCCCHHHHHHH
Q 027890 176 ----------IKTVP-----------LFHFY-KNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 176 ----------I~~~P-----------t~~~~-~~G~~v~~~-~~~~~~~l~~~ 205 (217)
+.++| +.+++ ++|+++.++ |..+.++|++.
T Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 99 ENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 56777 599999998 55777777654
No 113
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.07 E-value=7.4e-10 Score=81.00 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECC-------CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHHH
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYRT-------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSEV 170 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---~~~~~~l 170 (217)
..-++|.++++....++++++|.|+++ |||.|+...|.+++.....+. +..++.|.+.+. .+.+..+
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHH
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCc
Confidence 467889999988666689999999954 999999999999998887655 688888888442 1222334
Q ss_pred HH--HcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027890 171 AE--RLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 171 ~~--~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~ 207 (217)
.. +++++++||++-+.+++.+....-.+.+.|..+++
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred eEcceeeeeecceEEEECCCCccchhhhccHHHHHHHhc
Confidence 44 59999999999998775543333355666665554
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.06 E-value=1.1e-09 Score=72.55 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=54.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~ 200 (217)
+..|+++||++|+.+.+.|++. ++.+..+|+.++.....++.+++++.++|++++. |+. +.|.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHH
Confidence 5679999999999998887651 3778888984322223457788999999999874 654 5567888
Q ss_pred HHHHHHH
Q 027890 201 RIDAAIL 207 (217)
Q Consensus 201 ~l~~~l~ 207 (217)
.|.++|+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 9888873
No 115
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-10 Score=90.48 Aligned_cols=93 Identities=16% Similarity=0.308 Sum_probs=82.7
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
++.+...++.+.+++.+... ..+.++|.|+|.|.+.|+...|.+.++..+|.. +.+.|.+||+ ...++.+.+
T Consensus 123 pe~ikyf~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDi----Grfpd~a~k 194 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDI----GRFPDVAAK 194 (265)
T ss_pred chheeeecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceee----ccCcChHHh
Confidence 56788888888888888764 378999999999999999999999999999875 3799999999 889999999
Q ss_pred cCC------CCCcEEEEEECCEEEEEe
Q 027890 174 LKI------KTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 174 ~~I------~~~Pt~~~~~~G~~v~~~ 194 (217)
|+| ..+||+++|++|+.+.+.
T Consensus 195 fris~s~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 195 FRISLSPGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred eeeccCcccccCCeEEEEccchhhhcC
Confidence 998 469999999999999886
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.02 E-value=2.1e-09 Score=76.28 Aligned_cols=85 Identities=26% Similarity=0.471 Sum_probs=69.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHHHHHcC--CCCCcEEEEEECCEEEEE
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLK--IKTVPLFHFYKNGALVEA 193 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~-~~~~l~~~~~--I~~~Pt~~~~~~G~~v~~ 193 (217)
++++++.||++||++|+.+.|.+.++++.+.. .+.++.+|+ . ....+...|+ +..+|+++++.+|..+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNV----DDENPDLAAEFGVAVRSIPTLLLFKDGKEVDR 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEEC----CCCChHHHHHHhhhhccCCeEEEEeCcchhhh
Confidence 68999999999999999999999999999875 589999998 5 6788899999 999999999988876555
Q ss_pred e-C--CCCHHHHHHHHHH
Q 027890 194 F-P--TRDKERIDAAILK 208 (217)
Q Consensus 194 ~-~--~~~~~~l~~~l~~ 208 (217)
. + ......+......
T Consensus 105 ~~~~~~~~~~~~~~~~~~ 122 (127)
T COG0526 105 LVGGKVLPKEALIDALGE 122 (127)
T ss_pred hhhcccCCHHHHHHHhcc
Confidence 5 3 3555555544433
No 117
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.97 E-value=2.2e-09 Score=81.41 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=62.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHcC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERLK 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---------------------~~~~~~l~~~~~ 175 (217)
+|.|.++|.|.||++|+.+.|.+.++.++..+....+.++-|+-..+ .+...+++++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 79999999999999999999999999988876444455555553221 234568899999
Q ss_pred CCCCcEEEEEE-CCEEEEEe
Q 027890 176 IKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 176 I~~~Pt~~~~~-~G~~v~~~ 194 (217)
|.++|++++++ +|..+...
T Consensus 113 v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVTED 132 (157)
T ss_pred cCcCceeEEecCCCCEehHh
Confidence 99999999997 99888664
No 118
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.96 E-value=3.9e-09 Score=81.10 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc--------CC
Q 027890 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL--------KI 176 (217)
Q Consensus 108 ~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~--------~I 176 (217)
++++.|++++|+++|.++.+||..|+.|... |. ++++.+.. +++-++||. ++.+++...| |.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDr----ee~Pdid~~y~~~~~~~~~~ 100 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDR----EERPDIDKIYMNAVQAMSGS 100 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEET----TT-HHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEecc----ccCccHHHHHHHHHHHhcCC
Confidence 4444455559999999999999999999863 32 34444443 588889999 8999998888 88
Q ss_pred CCCcEEEEEE-CCEEEEEeC
Q 027890 177 KTVPLFHFYK-NGALVEAFP 195 (217)
Q Consensus 177 ~~~Pt~~~~~-~G~~v~~~~ 195 (217)
.|+|+.+|+. +|+++....
T Consensus 101 gGwPl~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 101 GGWPLTVFLTPDGKPFFGGT 120 (163)
T ss_dssp --SSEEEEE-TTS-EEEEES
T ss_pred CCCCceEEECCCCCeeeeee
Confidence 9999999997 999887653
No 119
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.95 E-value=1.7e-08 Score=73.87 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=78.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEECC----CChhhHHhH--HHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027890 105 EFFKILEKSKETGSLVVVDFYRT----SCGSCKYIE--QGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~ 178 (217)
.|.+++..++++.|.++|++|++ ||..|+... |.+.++.. . ++.+...|+.. .+...++..+++.+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~---~fv~w~~dv~~--~eg~~la~~l~~~~ 76 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T---RMLFWACSVAK--PEGYRVSQALRERT 76 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c---CEEEEEEecCC--hHHHHHHHHhCCCC
Confidence 57888888888899999999999 999997654 33444433 2 58899999944 45678999999999
Q ss_pred CcEEEEE---E-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 179 VPLFHFY---K-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 ~Pt~~~~---~-~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
+|++.++ . +.+++.++ |..++++|...|.....
T Consensus 77 ~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 77 YPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred CCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 9999999 2 34567777 77999999999987654
No 120
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.91 E-value=3.3e-10 Score=90.52 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=90.3
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.++.+ +++++...+. .-+++.|+|+||+.|+.+.|+|+.++.--.+ -.+.+.+||+ ..++.|.-+|-
T Consensus 25 ~~~~~-~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDv----t~npgLsGRF~ 91 (248)
T KOG0913|consen 25 KLTRI-DEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDV----TTNPGLSGRFL 91 (248)
T ss_pred eeEEe-cccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEE----EeccccceeeE
Confidence 44555 8899999885 4689999999999999999999999886444 3799999999 88999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccC
Q 027890 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~ 212 (217)
+...|||+..++|..-.+.|.++..+++.++...--.
T Consensus 92 vtaLptIYHvkDGeFrrysgaRdk~dfisf~~~r~w~ 128 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEFRRYSGARDKNDFISFEEHREWQ 128 (248)
T ss_pred EEecceEEEeeccccccccCcccchhHHHHHHhhhhh
Confidence 9999999999999988888999999999999865433
No 121
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.4e-08 Score=75.24 Aligned_cols=95 Identities=14% Similarity=0.249 Sum_probs=73.4
Q ss_pred HHhhhcCCCeEEEEEECCCChhhHHhHHHHHH---HHHHhCCCCCCEEEEEEEccCC------------cchhHHHHHHc
Q 027890 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSK---LCKGSGDQEAPVIFLKHNVIDE------------YDEQSEVAERL 174 (217)
Q Consensus 110 l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~v~~~~vd~~d~------------~~~~~~l~~~~ 174 (217)
.+++..+++..++.|-++.|.+|..+...+.. +.+-+.. ++.++.+|+++. .....+|++.|
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 34444468999999999999999999877543 3333333 688888887553 22456999999
Q ss_pred CCCCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHH
Q 027890 175 KIKTVPLFHFYK-NGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 175 ~I~~~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l~ 207 (217)
+|+++||++||+ +|+.+..+ |..+++++...++
T Consensus 112 ~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999997 89999999 5588888876654
No 122
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.88 E-value=3.4e-08 Score=77.97 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=65.1
Q ss_pred CCeE-EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----Cc---chhHHH-HHH--------------
Q 027890 117 GSLV-VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EY---DEQSEV-AER-------------- 173 (217)
Q Consensus 117 ~k~v-lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d----~~---~~~~~l-~~~-------------- 173 (217)
++++ |+.+||+||++|+...|.|.++.+++.+. ++.++.|++.+ +. +..... .++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~ 117 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVN 117 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecC
Confidence 6754 55669999999999999999999998753 58888887521 00 111111 112
Q ss_pred ----------------------cCCCCCcE---EEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 174 ----------------------LKIKTVPL---FHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 174 ----------------------~~I~~~Pt---~~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
+++.++|+ .+++ ++|+++.++ +..+.+.+.+.|++++.
T Consensus 118 g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 118 GENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457794 4566 599999998 66788899999888764
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.84 E-value=2.2e-08 Score=74.97 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCCC
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIKT 178 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~~~l~~~~~I~~ 178 (217)
+++++|.|| +.||+.|....+.+.++.+++... ++.++.|...+. .|....+.+.|++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 789999999 589999999999999999888642 466776654211 234457788899988
Q ss_pred C---------cEEEEEE-CCEEEEEe-CCCCHHHHHHH
Q 027890 179 V---------PLFHFYK-NGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 179 ~---------Pt~~~~~-~G~~v~~~-~~~~~~~l~~~ 205 (217)
+ |++++++ +|+++..+ |....+.+.+.
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 8 8999996 89999888 44555555443
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.82 E-value=3e-08 Score=72.60 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=61.1
Q ss_pred CCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC-
Q 027890 117 GSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK- 177 (217)
Q Consensus 117 ~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~~~l~~~~~I~- 177 (217)
++++||.||+. ||+.|+...+.+.++..+++.. ++.++.|...+. .|....+.+.|++.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 79999999999 9999999999999999988743 588888876321 24456788899998
Q ss_pred -----CCcEEEEEE-CCEEEE
Q 027890 178 -----TVPLFHFYK-NGALVE 192 (217)
Q Consensus 178 -----~~Pt~~~~~-~G~~v~ 192 (217)
.+|++++++ +|+++.
T Consensus 103 ~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTTSEESEEEEEEETTSBEEE
T ss_pred ccCCceEeEEEEECCCCEEEe
Confidence 899999997 777765
No 125
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.80 E-value=5.2e-08 Score=72.62 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=53.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc---CCCCCcEEEEEE-CCEEEE
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL---KIKTVPLFHFYK-NGALVE 192 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~---~I~~~Pt~~~~~-~G~~v~ 192 (217)
.+.-++.|..+|||.|+...|.+.++++..+. +.+--+.. |.+.++..+| |...+|++++++ +|+.+.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~r----d~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILR----DENKELMDQYLTNGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-H----HHHHHHTTTTTT-SS--SSEEEEE-TT--EEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEe----cCChhHHHHHHhCCCeecCEEEEEcCCCCEeE
Confidence 56788889999999999999999999998654 66555555 7778877666 678899999996 789999
Q ss_pred EeCCCCHHHHHHHH
Q 027890 193 AFPTRDKERIDAAI 206 (217)
Q Consensus 193 ~~~~~~~~~l~~~l 206 (217)
+++.+.. .+.+++
T Consensus 113 ~wgerP~-~~~~~~ 125 (129)
T PF14595_consen 113 RWGERPK-EVQELV 125 (129)
T ss_dssp EEESS-H-HHH---
T ss_pred EEcCCCH-HHhhcc
Confidence 9987643 333343
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.80 E-value=3e-08 Score=66.48 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=48.3
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH-----cCCCCCcEEEEEECCEEEEEeC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER-----LKIKTVPLFHFYKNGALVEAFP 195 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~-----~~I~~~Pt~~~~~~G~~v~~~~ 195 (217)
++.||++||++|+.+.+.|.++. +.+-.+|+ ++....... +++.++|++ ++.+|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi----~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~--- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDI----EEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT--- 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeC----cCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---
Confidence 56799999999999999887652 34556777 433443333 489999997 577886654
Q ss_pred CCCHHHHHHHHH
Q 027890 196 TRDKERIDAAIL 207 (217)
Q Consensus 196 ~~~~~~l~~~l~ 207 (217)
.....++.+.|+
T Consensus 65 ~~~~~~~~~~l~ 76 (77)
T TIGR02200 65 NPSAAQVKAKLQ 76 (77)
T ss_pred CCCHHHHHHHhh
Confidence 345556666554
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.78 E-value=7e-08 Score=75.36 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=69.2
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------------~~~~~~l~ 171 (217)
++++||+|| +.||++|....+.|.++.+++... ++.++.|.+.+. .|....++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 789999999 899999999999999999998653 466666654211 12344677
Q ss_pred HHcCCC------CCcEEEEEE-CCEEEEEe-C----CCCHHHHHHHHHHh
Q 027890 172 ERLKIK------TVPLFHFYK-NGALVEAF-P----TRDKERIDAAILKY 209 (217)
Q Consensus 172 ~~~~I~------~~Pt~~~~~-~G~~v~~~-~----~~~~~~l~~~l~~~ 209 (217)
+.|++. .+|++++++ +|+++..+ + +.+.++|.+.|+.+
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 888886 578999996 89888887 2 24677888888765
No 128
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.78 E-value=8e-08 Score=74.74 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCeEEEEEECCC-ChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------cc-hhHHHHHHcCC
Q 027890 117 GSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------YD-EQSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------~~-~~~~l~~~~~I 176 (217)
++++||+||++| |++|....+.|.++.+++. ++.++.|...+. .| ....+++.||+
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 789999999999 9999999999999998874 377777765321 12 33478899999
Q ss_pred CCCc---------EEEEEE-CCEEEEEeC------CCCHHHHHHHHH
Q 027890 177 KTVP---------LFHFYK-NGALVEAFP------TRDKERIDAAIL 207 (217)
Q Consensus 177 ~~~P---------t~~~~~-~G~~v~~~~------~~~~~~l~~~l~ 207 (217)
...| +.++++ +|+++..+. ..+.+++.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8777 888886 999888762 134556666553
No 129
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.77 E-value=8.5e-08 Score=75.96 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=68.1
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHc
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERL 174 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---------------------~~~~~~l~~~~ 174 (217)
++++||+|| +.||+.|....+.|.++.+++.+. ++.++.|.+.+. .|....+++.|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 789999999 999999999999999998888643 455555554210 12345788899
Q ss_pred CCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 175 KIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 175 ~I~------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
++. ..|+.++++ +|+++... .+++.++|.+.|+.+
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 986 469888885 89988775 246788888877543
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.74 E-value=2.3e-07 Score=75.06 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------CcchhHHHHHHcCCCC
Q 027890 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------EYDEQSEVAERLKIKT 178 (217)
Q Consensus 106 f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-------~~~~~~~l~~~~~I~~ 178 (217)
-+++|.... ++.-|++||.+.|+.|..+.|.+..++++|. +.++-|+++. +.-.+..++++++|..
T Consensus 111 ~~~~l~~la--~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~ 183 (215)
T PF13728_consen 111 RDKALKQLA--QKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV 183 (215)
T ss_pred HHHHHHHHh--hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc
Confidence 344454432 7889999999999999999999999999995 4555555510 0013578999999999
Q ss_pred CcEEEEEE-CCEEEEEe--CCCCHHHHHHHH
Q 027890 179 VPLFHFYK-NGALVEAF--PTRDKERIDAAI 206 (217)
Q Consensus 179 ~Pt~~~~~-~G~~v~~~--~~~~~~~l~~~l 206 (217)
+|+++++. ++.....+ |-.+.++|.+-|
T Consensus 184 ~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 184 TPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 99999997 55455555 668888887644
No 131
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.6e-09 Score=81.85 Aligned_cols=103 Identities=22% Similarity=0.345 Sum_probs=88.0
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
.++++...++| ... .++.+++.||++||.+|..|...++.+++... ++.+++++. ++.++++..+.
T Consensus 2 ~v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a----~~~~eis~~~~ 67 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEA----EEFPEISNLIA 67 (227)
T ss_pred CceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehh----hhhhHHHHHHH
Confidence 35667778888 333 28999999999999999999999999999874 599999999 99999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccC
Q 027890 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 176 I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~ 212 (217)
+...|++.++..|+.+.+..+.++..+...+..+...
T Consensus 68 v~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 104 (227)
T KOG0911|consen 68 VEAVPYFVFFFLGEKVDRLSGADPPFLVSKVEKLAES 104 (227)
T ss_pred HhcCceeeeeecchhhhhhhccCcHHHHHHHHHhhhh
Confidence 9999999999999999999887777777766666543
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.74 E-value=6e-08 Score=61.08 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=48.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHH---HHcCCCCCcEEEEEECC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA---ERLKIKTVPLFHFYKNG 188 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~---~~~~I~~~Pt~~~~~~G 188 (217)
++.||++||++|+.+.+.+.++ +.... ++.++.+|+ +...... ..+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK---GVKFEAVDV----DEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC---CcEEEEEEc----CCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 33332 599999999 4444433 48999999999999876
No 133
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.69 E-value=1.3e-07 Score=71.22 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=58.8
Q ss_pred CCeEEEEEECCC-ChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------cch-hHHHHHHcCC
Q 027890 117 GSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------YDE-QSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------~~~-~~~l~~~~~I 176 (217)
++++||+||+.| |++|+...+.|.++.+++.+ +.++.|+..+. .|. ...+++.|++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~----~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv 101 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN----TVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV 101 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC----CEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence 789999999999 69999999999999998753 78888876321 122 2567888888
Q ss_pred CC------CcEEEEEE-CCEEEEEe
Q 027890 177 KT------VPLFHFYK-NGALVEAF 194 (217)
Q Consensus 177 ~~------~Pt~~~~~-~G~~v~~~ 194 (217)
.. .|+.++++ +|+++...
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEE
Confidence 53 68988886 99998887
No 134
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.67 E-value=3.6e-07 Score=72.42 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=70.9
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHc
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERL 174 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---------------------~~~~~~l~~~~ 174 (217)
++++||.|| +.||+.|....+.|.++.+++... ++.++.|...+. .|.+..+++.|
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 789999999 999999999999999999998643 466666665221 12356788999
Q ss_pred CC----CCC--cEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 175 KI----KTV--PLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 175 ~I----~~~--Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
|+ .++ |+.++++ +|+++... .+++.+++.+.|+.+
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 98 356 9999996 89887765 357899999988654
No 135
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.67 E-value=2.9e-07 Score=63.44 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=60.2
Q ss_pred EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC--CCCCcEEEEEECCEEEEEeCCC
Q 027890 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--IKTVPLFHFYKNGALVEAFPTR 197 (217)
Q Consensus 120 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~--I~~~Pt~~~~~~G~~v~~~~~~ 197 (217)
-++.|+.+||++|+.....|+++..++.+ +.+..+|+..+.....++...++ +..+|+++ .+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig----- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG----- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc-----
Confidence 36789999999999999999999877544 88888888332112445666555 47899965 5887764
Q ss_pred CHHHHHHHHHHhcc
Q 027890 198 DKERIDAAILKYTS 211 (217)
Q Consensus 198 ~~~~l~~~l~~~~~ 211 (217)
..++|.+++..+++
T Consensus 71 g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 GCTDFEAYVKENLG 84 (85)
T ss_pred CHHHHHHHHHHhcc
Confidence 45788888887764
No 136
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.67 E-value=7.3e-07 Score=63.60 Aligned_cols=101 Identities=24% Similarity=0.265 Sum_probs=72.5
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027890 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~ 177 (217)
..+++.++|+++++.+. +++++|+=.++.|+-.......|++......+ .+.++.+|+-...+-...++.+|||.
T Consensus 2 ~~L~t~eql~~i~~~S~--~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESK--EKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVK 76 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT--
T ss_pred CccCCHHHHHHHHHhcc--cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCC
Confidence 45789999999999864 79999999999999999999999999998776 48899999854444556789999996
Q ss_pred C-CcEEEEEECCEEEEEe--CCCCHHHHH
Q 027890 178 T-VPLFHFYKNGALVEAF--PTRDKERID 203 (217)
Q Consensus 178 ~-~Pt~~~~~~G~~v~~~--~~~~~~~l~ 203 (217)
. -|.+++++||+.+... ...+.+.|+
T Consensus 77 HeSPQ~ili~~g~~v~~aSH~~It~~~lk 105 (105)
T PF11009_consen 77 HESPQVILIKNGKVVWHASHWDITAEALK 105 (105)
T ss_dssp --SSEEEEEETTEEEEEEEGGG-SHHHH-
T ss_pred cCCCcEEEEECCEEEEECccccCCHHhcC
Confidence 4 6999999999999876 556776653
No 137
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.66 E-value=2.6e-07 Score=69.92 Aligned_cols=88 Identities=19% Similarity=0.110 Sum_probs=63.5
Q ss_pred CeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchh--HHHHHHcCCC
Q 027890 118 SLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQ--SEVAERLKIK 177 (217)
Q Consensus 118 k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~--~~l~~~~~I~ 177 (217)
++++|.|| ++||+.|....|.+.++.+++.+. ++.++.|...+. .|.. ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 78888887 999999999999999999988642 477777764220 2333 6788889987
Q ss_pred C----Cc--EEEEEE-CCEEEEEeC-----CCCHHHHHHHHH
Q 027890 178 T----VP--LFHFYK-NGALVEAFP-----TRDKERIDAAIL 207 (217)
Q Consensus 178 ~----~P--t~~~~~-~G~~v~~~~-----~~~~~~l~~~l~ 207 (217)
. +| ++++++ +|+++..+. +.+..++.+.|+
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 3 33 778885 899888873 344556665553
No 138
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1e-07 Score=68.64 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEEC--------CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHH
Q 027890 101 KTDAEFFKILEKSKETGSLVVVDFYR--------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSE 169 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---~~~~~~ 169 (217)
...++|++.+++.. +++.++|.|++ +|||.|.+..|.+.+..+..+. ++.|+.|++.+. .+.+..
T Consensus 10 ~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 10 PGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred chHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCc
Confidence 46788999888764 36669999995 5999999999999998886655 799999998653 234556
Q ss_pred HHHHcCC-CCCcEEEEEEC
Q 027890 170 VAERLKI-KTVPLFHFYKN 187 (217)
Q Consensus 170 l~~~~~I-~~~Pt~~~~~~ 187 (217)
+....++ .++||++-|++
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 6667777 99999999974
No 139
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.65 E-value=2.6e-07 Score=72.87 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~ 161 (217)
++++||.|||+||+.|.. .+.|+++.++|.+. ++.++.+.+.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~--gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ--GFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC--CeEEEEeecc
Confidence 799999999999999975 78999999998753 5888888773
No 140
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.64 E-value=2.7e-07 Score=69.57 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC--
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK-- 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~~~l~~~~~I~-- 177 (217)
++.+|+.||++||++|+...+.|.++.+++.+. ++.++.|...+. .|....+.+.|++.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~ 101 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRS 101 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceec
Confidence 345555567999999999999999999988532 588888876321 23445667777773
Q ss_pred ---------------------------CCcEEEEEE-CCEEEEEe
Q 027890 178 ---------------------------TVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 178 ---------------------------~~Pt~~~~~-~G~~v~~~ 194 (217)
.+|+.++++ +|+++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 678877775 66666554
No 141
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.62 E-value=3.7e-07 Score=69.75 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=58.5
Q ss_pred CCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCCC
Q 027890 117 GSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIKT 178 (217)
Q Consensus 117 ~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~~~l~~~~~I~~ 178 (217)
++++||+||+. ||+.|....+.+.++.+++.+. ++.++.|...+. .|....+.+.|++..
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 78999999976 6888999999999998888643 477777765221 234456788888865
Q ss_pred C------------cEEEEEE-CCEEEEEeCC
Q 027890 179 V------------PLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 179 ~------------Pt~~~~~-~G~~v~~~~~ 196 (217)
. |+.++++ +|+++..+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 4 6677775 9999999854
No 142
>PRK15000 peroxidase; Provisional
Probab=98.61 E-value=4.6e-07 Score=72.57 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027890 117 GSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------------~~~~~~l~ 171 (217)
++++||.||+. ||+.|....+.|.++.+++... ++.++.|.+.+. .|....++
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 78999999994 9999999999999999998753 466777765321 12334677
Q ss_pred HHcCCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 172 ERLKIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 172 ~~~~I~------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
+.|++. .+|+.++++ +|++.... .+++.+++.+.|+.+
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 888987 699999997 89888765 368999999888764
No 143
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.61 E-value=4.4e-07 Score=72.77 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=69.4
Q ss_pred CCeEEE-EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027890 117 GSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------------~~~~~~l~~ 172 (217)
++.++| .||++||+.|....+.|.++.+++.+. ++.++.|.+.+. .|....+++
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 666655 689999999999999999998888653 466666655210 133467888
Q ss_pred HcCCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027890 173 RLKIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 173 ~~~I~------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~~ 210 (217)
.||+. .+|++++++ +|++.... .|++.+++.+.|+.+.
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 89984 589999996 88877554 4789999999998764
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.60 E-value=3.1e-07 Score=62.61 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=50.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-chhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDK 199 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~-~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~ 199 (217)
++.|+++||++|+.+.+.|.++. ... .+.++.+|..++. +....+.+.+++.++|++ |-+|+.+. | .
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig---g--~ 68 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG---G--C 68 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc---C--H
Confidence 47899999999999999999876 222 3778888762211 112347778899999997 45776553 2 3
Q ss_pred HHHHHHHH
Q 027890 200 ERIDAAIL 207 (217)
Q Consensus 200 ~~l~~~l~ 207 (217)
+++.+..+
T Consensus 69 ~~~~~~~~ 76 (84)
T TIGR02180 69 SDLLALYK 76 (84)
T ss_pred HHHHHHHH
Confidence 55555443
No 145
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.60 E-value=1.1e-06 Score=59.35 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=53.7
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeC-CCCHH
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFP-TRDKE 200 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~-~~~~~ 200 (217)
|.+++++|+.|..+...+.++...+. +.+--+|+ ...+++ .+|||.++|++++ ||+.+. .| -.+.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~----~~~~~~-~~ygv~~vPalvI--ng~~~~-~G~~p~~~ 69 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI----EDFEEI-EKYGVMSVPALVI--NGKVVF-VGRVPSKE 69 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET----TTHHHH-HHTT-SSSSEEEE--TTEEEE-ESS--HHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc----cCHHHH-HHcCCCCCCEEEE--CCEEEE-EecCCCHH
Confidence 34478889999999999999988873 55555566 566677 9999999999843 777543 34 56788
Q ss_pred HHHHHHH
Q 027890 201 RIDAAIL 207 (217)
Q Consensus 201 ~l~~~l~ 207 (217)
+|+++|+
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888874
No 146
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.56 E-value=2e-06 Score=71.06 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----CcchhHHHHHHcCCCCCcE
Q 027890 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----EYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 107 ~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-----~~~~~~~l~~~~~I~~~Pt 181 (217)
+++|+... ++.-|++||.+.|++|..+.|.+..++++|.- .+..+.+|..- +.-.+..+++++||..+|+
T Consensus 142 ~~~i~~la--~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 142 EKAIQQLS--QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI---SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHHHH--hceeEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 44454443 57999999999999999999999999999963 34444444310 0012366899999999999
Q ss_pred EEEEE-CCEEEEEe--CCCCHHHHHHHHHHhccC
Q 027890 182 FHFYK-NGALVEAF--PTRDKERIDAAILKYTST 212 (217)
Q Consensus 182 ~~~~~-~G~~v~~~--~~~~~~~l~~~l~~~~~~ 212 (217)
++++. +.+....+ |-.+.++|.+-|...+..
T Consensus 217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 217 LYLVNPKSQKMSPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 99996 54555554 678999998888776543
No 147
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.56 E-value=1.7e-06 Score=73.24 Aligned_cols=109 Identities=13% Similarity=0.189 Sum_probs=79.4
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHH-----hHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHH
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKY-----IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~-----~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~ 169 (217)
..++.+ +..||.++++. .+.++|+||.+--..--. |...+-+|+.+.-. ..+|.|+.||. .+...
T Consensus 34 DRVi~L-neKNfk~~lKk----yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE-~~gigfg~VD~----~Kd~k 103 (383)
T PF01216_consen 34 DRVIDL-NEKNFKRALKK----YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLE-DKGIGFGMVDS----KKDAK 103 (383)
T ss_dssp --CEEE--TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCG-GCTEEEEEEET----TTTHH
T ss_pred cceEEc-chhHHHHHHHh----hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcc-ccCcceEEecc----HHHHH
Confidence 466677 88999999998 688999999887432222 23334455555432 44799999999 99999
Q ss_pred HHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCC
Q 027890 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 170 l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~~ 213 (217)
+++++|+...+++.+|++|+.+.+.|.++++.|..||...+..+
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSS
T ss_pred HHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999988654
No 148
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.2e-06 Score=63.68 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=84.4
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027890 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~ 178 (217)
.++|..+.++++... ..+.++|-|.-.|-+.|.+|...|.++++.... -..++-+|+ ++.+++.+-|++..
T Consensus 7 ~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~Iylvdi----deV~~~~~~~~l~~ 77 (142)
T KOG3414|consen 7 TLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDI----DEVPDFVKMYELYD 77 (142)
T ss_pred ccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEec----chhhhhhhhhcccC
Confidence 457888899998875 479999999999999999999999999999876 478888999 89999999999999
Q ss_pred CcEEEEEECCEEEEEe-C----------CCCHHHHHHHHHHhc
Q 027890 179 VPLFHFYKNGALVEAF-P----------TRDKERIDAAILKYT 210 (217)
Q Consensus 179 ~Pt~~~~~~G~~v~~~-~----------~~~~~~l~~~l~~~~ 210 (217)
.|+++||-+++.+.-- | -.+.+++...++-..
T Consensus 78 p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 78 PPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred CceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 9999999776655432 2 135667777666543
No 149
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.48 E-value=7.7e-07 Score=66.69 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.9
Q ss_pred CCeEEEEEECCCChh-hHHhHHHHHHHHHHhCCCC-CCEEEEEEEc
Q 027890 117 GSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQE-APVIFLKHNV 160 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~v~~~~vd~ 160 (217)
+++++|.||++||++ |....+.+.++.+++.+.. .++.++.|..
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 789999999999998 9999999999999886532 2477777765
No 150
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.47 E-value=1.1e-06 Score=65.58 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------cchhHHHHHHcCCC
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------~~~~~~l~~~~~I~ 177 (217)
+++++|.|| +.||+.|....+.+.++.+++... ++.++.|...+. .|....+.+.|++.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~ 99 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVL 99 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCc
Confidence 799999999 789999999999999999988432 477777765221 13345777888887
Q ss_pred CCc---------EEEEEE-CCEEEEEeCC
Q 027890 178 TVP---------LFHFYK-NGALVEAFPT 196 (217)
Q Consensus 178 ~~P---------t~~~~~-~G~~v~~~~~ 196 (217)
..| ++++++ +|+++....+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEec
Confidence 666 777786 7998888744
No 151
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.44 E-value=2e-06 Score=69.67 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCe-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027890 117 GSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------------~~~~~~l~~ 172 (217)
++. ||+.||++||+.|....+.|.++..++... ++.++.|.+.+. .|....+++
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 565 568999999999999999999999998653 467777765321 123446788
Q ss_pred HcCCC-------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 173 RLKIK-------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~-------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
.||+. .+|++++++ +|++...+ .+++.+++.+.|+.+
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 88873 579999996 89887664 367899999988765
No 152
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.44 E-value=3.8e-06 Score=69.11 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=73.2
Q ss_pred HHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----cchhHHHHHHcCCCCCcE
Q 027890 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----YDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 107 ~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----~~~~~~l~~~~~I~~~Pt 181 (217)
+++|+... ++.-|++||.+.|++|..+.|.+..++++|.- .+..+.+|..-. .-.+...+.+++|..+|+
T Consensus 135 ~~~i~~la--~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PA 209 (248)
T PRK13703 135 RQAIAKLA--EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL---SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPA 209 (248)
T ss_pred HHHHHHHH--hcceEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCCccChhHHHhcCCcccce
Confidence 34454443 56899999999999999999999999999964 344455543110 012345678999999999
Q ss_pred EEEEE-CCEEEEEe--CCCCHHHHHHHHHHhccCC
Q 027890 182 FHFYK-NGALVEAF--PTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 182 ~~~~~-~G~~v~~~--~~~~~~~l~~~l~~~~~~~ 213 (217)
++++. +.+....+ |-.+.++|.+-|...+..-
T Consensus 210 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 210 LMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 99996 44444444 6689999998888765443
No 153
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.43 E-value=3.2e-06 Score=70.19 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=69.5
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------------~~~~~~l~ 171 (217)
++++|+.|| +.||+.|....+.|.++.+++.+. ++.++.|.+.+. .|.+..++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 677888887 899999999999999999998653 355565554220 12346788
Q ss_pred HHcCCC-----CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 172 ERLKIK-----TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 172 ~~~~I~-----~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
+.||+. ..|+.++++ +|++.... .+++.+++.+.|+.+
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 999985 589999997 89888765 468999999888754
No 154
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.43 E-value=1.8e-06 Score=56.72 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=47.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~ 200 (217)
++.|+++||++|..+...+.+. ++.+..+|+..+.+...++.+..++.++|++++ +|+ .++|.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHH
Confidence 5679999999999988877652 255666777211111223444447899999865 553 44677888
Q ss_pred HHHHHH
Q 027890 201 RIDAAI 206 (217)
Q Consensus 201 ~l~~~l 206 (217)
.|.++|
T Consensus 68 ~l~~~~ 73 (73)
T cd02976 68 KLRALL 73 (73)
T ss_pred HHHhhC
Confidence 887764
No 155
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.41 E-value=2.4e-06 Score=59.04 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=57.6
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC--CCCcEEEEEECCEEEEEeCCCC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI--KTVPLFHFYKNGALVEAFPTRD 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I--~~~Pt~~~~~~G~~v~~~~~~~ 198 (217)
++.|..+||++|......|.++...+.+ +.+..+|+..+.....++...++- .++|+++ -+|+.+ | .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~----i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---g--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD----FEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---G--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC----CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe---c--C
Confidence 6789999999999999999998765543 778888883221124467777774 7899984 467654 2 3
Q ss_pred HHHHHHHHHHhcc
Q 027890 199 KERIDAAILKYTS 211 (217)
Q Consensus 199 ~~~l~~~l~~~~~ 211 (217)
.++|.+++.+..+
T Consensus 71 ~~dl~~~~~~~~~ 83 (86)
T TIGR02183 71 CTDFEQLVKENFD 83 (86)
T ss_pred HHHHHHHHHhccc
Confidence 5788888887654
No 156
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.40 E-value=3.3e-06 Score=68.39 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCeEE-EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027890 117 GSLVV-VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~vl-V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------------~~~~~~l~~ 172 (217)
+++++ +.||++||+.|....+.|.++..++... ++.++.|.+.+. .|.+..+++
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 56555 4889999999999999999999998643 466776665221 122357778
Q ss_pred HcCCC-------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 173 RLKIK-------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~-------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
.||+. .+|+.++++ +|++...+ .|++.+++.+.|+.+
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88873 368888996 88887764 468999999999765
No 157
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.39 E-value=3.6e-06 Score=67.50 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=66.4
Q ss_pred Ce-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHHH
Q 027890 118 SL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAER 173 (217)
Q Consensus 118 k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------------~~~~~~l~~~ 173 (217)
++ +|+.||++||+.|....+.|.++.+++... ++.++.|.+.+. .|....+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 54 556899999999999999999999988653 467777765321 1234578889
Q ss_pred cCCC----C----CcEEEEEE-CCEEEEEe-C----CCCHHHHHHHHHHh
Q 027890 174 LKIK----T----VPLFHFYK-NGALVEAF-P----TRDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~----~----~Pt~~~~~-~G~~v~~~-~----~~~~~~l~~~l~~~ 209 (217)
||+. + +|+.++++ +|++.... + +++.++|.+.|+.+
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9975 2 34577775 88887665 2 67889999988765
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.39 E-value=4.1e-06 Score=68.62 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=63.0
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc----------------------------------
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI---------------------------------- 161 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~---------------------------------- 161 (217)
+++..|+.|.-+.||+|+++++.+.++.+. ++.+..+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 468899999999999999999998887541 1333222211
Q ss_pred ------CCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027890 162 ------DEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 162 ------d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~ 209 (217)
...+.+.++++++||.++|+++ +.||+.+ .|..+.++|.++|++.
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 0014567889999999999998 7788766 3557899999999864
No 159
>PRK13189 peroxiredoxin; Provisional
Probab=98.38 E-value=3.7e-06 Score=68.39 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCe-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027890 117 GSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------------~~~~~~l~~ 172 (217)
++. +|+.||++||+.|....+.|.++.+++... ++.++.|.+.+. .|....+++
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 664 456788999999999999999999988643 466666655221 123456788
Q ss_pred HcCCC-------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 173 RLKIK-------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~-------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
.||+. .+|++++++ +|++.... .+++.+++.+.|+.+
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88875 468899997 88886654 478899999988765
No 160
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.28 E-value=1.3e-05 Score=64.03 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCeEEEEEEC-CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027890 117 GSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------------------------~~~~~~l~ 171 (217)
++.++|.||+ .||+.|....+.|.++.+++... ++.++.|.+.+. .|...+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 7899999995 88999998889999999998754 466776765321 12345788
Q ss_pred HHcCCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 172 ERLKIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 172 ~~~~I~------~~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
+.||+. .+|+.++++ +|+++... .+++.+++.+.|+..
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 999985 468999997 88877665 357888888887654
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.27 E-value=7.2e-06 Score=52.46 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=43.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
++.|+.+||++|+.....|++. ++.+-.+|+.+..+...++.+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5679999999999999888443 367777888432223345555569999999875 77654
No 162
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.25 E-value=2.9e-05 Score=60.45 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=82.2
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCe-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 96 CVREFKTDAEFFKILEKSKETGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
.+.++ |.+++..+... +.+ +++.|+.........+...+..+++.+.+ ++.|+.+|+ +..+.+++.+
T Consensus 78 ~v~~~-t~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~~f~~~d~----~~~~~~~~~~ 145 (184)
T PF13848_consen 78 LVPEL-TPENFEKLFSS----PKPPVLILFDNKDNESTEAFKKELQDIAKKFKG---KINFVYVDA----DDFPRLLKYF 145 (184)
T ss_dssp SCEEE-STTHHHHHHST----SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT---TSEEEEEET----TTTHHHHHHT
T ss_pred ccccc-chhhHHHHhcC----CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC---eEEEEEeeh----HHhHHHHHHc
Confidence 56667 67889988876 555 88888877888889999999999999987 699999999 7778899999
Q ss_pred CCC--CCcEEEEEE--CCEEEEEe-CCCCHHHHHHHHHH
Q 027890 175 KIK--TVPLFHFYK--NGALVEAF-PTRDKERIDAAILK 208 (217)
Q Consensus 175 ~I~--~~Pt~~~~~--~G~~v~~~-~~~~~~~l~~~l~~ 208 (217)
++. .+|++++++ +++..... +..+.+.|.+||++
T Consensus 146 ~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 146 GIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 998 899999998 44432222 66899999999874
No 163
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.24 E-value=4.7e-06 Score=66.08 Aligned_cols=107 Identities=20% Similarity=0.377 Sum_probs=90.4
Q ss_pred CCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027890 93 PVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 93 ~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~ 172 (217)
..+.|.++.+..+|-+.|.... ..-.++|+.|-+.-.-|-++...+.=|+.+|+. +.|+++-. .+....+
T Consensus 136 ~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckiks-----s~~gas~ 205 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKS-----SNTGASD 205 (273)
T ss_pred ccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeee-----ccccchh
Confidence 3568999999999999998742 145678999999999999999999999999987 99999875 4566788
Q ss_pred HcCCCCCcEEEEEECCEEEEEeC--------CCCHHHHHHHHHHh
Q 027890 173 RLKIKTVPLFHFYKNGALVEAFP--------TRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~~~Pt~~~~~~G~~v~~~~--------~~~~~~l~~~l~~~ 209 (217)
+|...++|++++|++|+.+.-+. .....+|..||+++
T Consensus 206 ~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 206 RFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred hhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999999999997762 24566888998876
No 164
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.20 E-value=1.8e-05 Score=72.77 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCeEEE-EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeC
Q 027890 117 GSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFP 195 (217)
Q Consensus 117 ~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~ 195 (217)
++++-| .|.+++|++|......+++++...++ +..-.+|+ ...++++++|+|.++|++++ ||+.+.. |
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~----i~~~~i~~----~~~~~~~~~~~v~~vP~~~i--~~~~~~~-G 543 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN----VEAEMIDV----SHFPDLKDEYGIMSVPAIVV--DDQQVYF-G 543 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC----ceEEEEEC----cccHHHHHhCCceecCEEEE--CCEEEEe-e
Confidence 456644 55899999999999999999998764 88888999 88899999999999999775 6765533 6
Q ss_pred CCCHHHHHHHH
Q 027890 196 TRDKERIDAAI 206 (217)
Q Consensus 196 ~~~~~~l~~~l 206 (217)
..+.++|..+|
T Consensus 544 ~~~~~~~~~~~ 554 (555)
T TIGR03143 544 KKTIEEMLELI 554 (555)
T ss_pred CCCHHHHHHhh
Confidence 67899998876
No 165
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.18 E-value=5e-05 Score=55.96 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=78.6
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027890 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~ 177 (217)
..+++.-+.+++|... .++.++|-|.-+|-+.|.++...|.+++++... -..++.||+ ++-+++.+.|.+.
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi----~~Vpdfn~~yel~ 73 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDI----DEVPDFNQMYELY 73 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEET----TTTHCCHHHTTS-
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEc----ccchhhhcccccC
Confidence 4567888999998874 489999999999999999999999999999877 489999999 8899999999998
Q ss_pred CCcE-EEEEECCEEEEEe-C----------CCCHHHHHHHHHHh
Q 027890 178 TVPL-FHFYKNGALVEAF-P----------TRDKERIDAAILKY 209 (217)
Q Consensus 178 ~~Pt-~~~~~~G~~v~~~-~----------~~~~~~l~~~l~~~ 209 (217)
-|. ++||-+++.+.-- | -.+.+++...++..
T Consensus 74 -dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 74 -DPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp -SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred -CCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 776 4555577766543 2 13467777766643
No 166
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.16 E-value=1.7e-05 Score=53.65 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=44.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-cchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-YDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
++.|+++||++|..+.+.|.++... +.++.++..+. .+....+.+.+++.++|++ |-+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-------PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 5779999999999999999887552 56777776221 0112356677799999996 56777653
No 167
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.16 E-value=2.1e-05 Score=53.30 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
++.-|+.|+.+||++|+.....|.+. ++.+..+|+..+ +...++....+...+|.++ -+|+.+. |
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~-~~~~~~~~~~g~~~vP~i~--i~g~~ig---G 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGND-ARGRSLRAVTGATTVPQVF--IGGKLIG---G 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCC-hHHHHHHHHHCCCCcCeEE--ECCEEEc---C
Confidence 45557789999999999999888643 255666777332 3345666778999999985 4787653 2
Q ss_pred CCHHHHHHHH
Q 027890 197 RDKERIDAAI 206 (217)
Q Consensus 197 ~~~~~l~~~l 206 (217)
.++|.++|
T Consensus 71 --~~~l~~~l 78 (79)
T TIGR02190 71 --SDELEAYL 78 (79)
T ss_pred --HHHHHHHh
Confidence 35666654
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.11 E-value=2.5e-05 Score=62.23 Aligned_cols=82 Identities=16% Similarity=0.322 Sum_probs=56.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----------------------------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID---------------------------------- 162 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d---------------------------------- 162 (217)
.+..++.|..++|++|+.+.+.+.+. ..+ -.+.++.+....
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~--v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN---ADG--VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc---cCc--eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 68999999999999999999988761 111 012222221100
Q ss_pred -----CcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027890 163 -----EYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 163 -----~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l 206 (217)
..+.+..+++++||.++|+++ +.+|+.+. |..+.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~~--G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRVVP--GAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeEec--CCCCHHHHHhhC
Confidence 013566889999999999997 78887642 446778887764
No 169
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.08 E-value=6.2e-05 Score=51.39 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=54.1
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~ 200 (217)
+..|..+||++|......|++. ++.|-.+|+.++ .+..+..+..+...+|++++ ++. .+.|.+++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHH
Confidence 5678899999999998888542 477888888322 12222334568889999854 443 34688999
Q ss_pred HHHHHHHHhccC
Q 027890 201 RIDAAILKYTST 212 (217)
Q Consensus 201 ~l~~~l~~~~~~ 212 (217)
+|.+++..+...
T Consensus 68 ~l~~~~~~~~~~ 79 (81)
T PRK10329 68 MINRLHPAPHAA 79 (81)
T ss_pred HHHHHHHhhhhh
Confidence 999998876543
No 170
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.04 E-value=8.4e-05 Score=51.95 Aligned_cols=93 Identities=26% Similarity=0.286 Sum_probs=69.4
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027890 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~ 177 (217)
.++.+.+++++++.. ++.++|-|+.++|. .....|.+++..+.+ .+.|+.+. +.++++.+++.
T Consensus 2 ~~i~s~~~l~~~~~~----~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~-------~~~~~~~~~~~ 64 (97)
T cd02981 2 KELTSKEELEKFLDK----DDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS-------DKEVAKKLKVK 64 (97)
T ss_pred eecCCHHHHHHHhcc----CCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC-------hHHHHHHcCCC
Confidence 456788888887765 78999999999998 466778888888875 48887654 35677778875
Q ss_pred CCcEEEEEECC--EEEEEeCCCCHHHHHHHHHH
Q 027890 178 TVPLFHFYKNG--ALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 178 ~~Pt~~~~~~G--~~v~~~~~~~~~~l~~~l~~ 208 (217)
.|++++|+.. ..+.+-|..+.+.|.+||..
T Consensus 65 -~~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 65 -PGSVVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred -CCceEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 4899999743 33333366778999999874
No 171
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.03 E-value=6.2e-05 Score=53.98 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=65.3
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChh---hHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGS---CKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~---C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~ 173 (217)
...+ +.+++++.+.. +...++ |.+..|.. +....=.+-++.+.+++ .+..+.++- +....|..+
T Consensus 11 ~~~v-d~~~ld~~l~~----~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~----~~e~~L~~r 77 (107)
T PF07449_consen 11 WPRV-DADTLDAFLAA----PGDAVL-FFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVAR----AAERALAAR 77 (107)
T ss_dssp EEEE--CCCHHHHHHC----CSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEH----HHHHHHHHH
T ss_pred Ceee-chhhHHHHHhC----CCcEEE-EECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECc----hhHHHHHHH
Confidence 4445 56778888876 455554 55555544 44444468888888887 577777776 788999999
Q ss_pred cCCCCCcEEEEEECCEEEEEeCC-CCHH
Q 027890 174 LKIKTVPLFHFYKNGALVEAFPT-RDKE 200 (217)
Q Consensus 174 ~~I~~~Pt~~~~~~G~~v~~~~~-~~~~ 200 (217)
||+..+|+++||++|+.+..+.+ ++.+
T Consensus 78 ~gv~~~PaLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 78 FGVRRWPALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp HT-TSSSEEEEEETTEEEEEEESSSTHH
T ss_pred hCCccCCeEEEEECCEEEEEecCeeccc
Confidence 99999999999999999999855 4544
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.01 E-value=7e-05 Score=68.26 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
++.-+-.|++++|++|......+++++...+. |.+-.+|. ...++++.+|+|.++|++++ ||+.+ ..|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~----i~~~~id~----~~~~~~~~~~~v~~VP~~~i--~~~~~-~~g~ 184 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPN----ITHTMIDG----ALFQDEVEARNIMAVPTVFL--NGEEF-GQGR 184 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCC----ceEEEEEc----hhCHhHHHhcCCcccCEEEE--CCcEE-EecC
Confidence 34458889999999999999999999887664 89999999 89999999999999999864 66544 3366
Q ss_pred CCHHHHHHHHHHhc
Q 027890 197 RDKERIDAAILKYT 210 (217)
Q Consensus 197 ~~~~~l~~~l~~~~ 210 (217)
.+.++|.+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~ 198 (517)
T PRK15317 185 MTLEEILAKLDTGA 198 (517)
T ss_pred CCHHHHHHHHhccc
Confidence 77888888887643
No 173
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.99 E-value=0.0001 Score=55.47 Aligned_cols=32 Identities=34% Similarity=0.764 Sum_probs=28.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
.+..|+.|+.++|++|+.+.+.+.++..++.+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 68899999999999999999999998776643
No 174
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.98 E-value=5.4e-05 Score=49.24 Aligned_cols=61 Identities=25% Similarity=0.457 Sum_probs=43.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
++.|+++||++|+.+...|.+.. +.+..+|+..+.+...++.+..+...+|++ |.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56789999999999999888763 456677773322234455666788889976 45787665
No 175
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.95 E-value=4.4e-05 Score=50.73 Aligned_cols=70 Identities=14% Similarity=0.344 Sum_probs=46.7
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~ 201 (217)
..|..++|++|+.....|++. ++.|-.+|+..+ ....+...+.|..++|++++ +|+ ..++|.+++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCC-HHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHH
Confidence 468899999999999888752 367777788221 12222233458889999643 443 2457888888
Q ss_pred HHHH
Q 027890 202 IDAA 205 (217)
Q Consensus 202 l~~~ 205 (217)
|.++
T Consensus 68 ~~~~ 71 (72)
T TIGR02194 68 LKAL 71 (72)
T ss_pred HHhc
Confidence 8753
No 176
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.95 E-value=0.00022 Score=54.35 Aligned_cols=85 Identities=26% Similarity=0.408 Sum_probs=64.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHh--CCCCCCEEEEEEEccCC-------------------------------
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGS--GDQEAPVIFLKHNVIDE------------------------------- 163 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~--~~~~~~v~~~~vd~~d~------------------------------- 163 (217)
.+++|+.|+...|++|..+.+.+.++.+++ .+ ++.|+.+++.-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~---~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 88 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG---KVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQ 88 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT---TEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC---ceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 578999999999999999999999999988 44 688888765211
Q ss_pred ---------------------------------cchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHH
Q 027890 164 ---------------------------------YDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 164 ---------------------------------~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~ 208 (217)
.......+++++|.++||+++ ||+.+ .+..+.++|.++|++
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~--~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 89 QENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV--VGPYTIEELKELIDK 162 (162)
T ss_dssp CHSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE--ETTTSHHHHHHHHHH
T ss_pred hhccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe--CCCCCHHHHHHHHcC
Confidence 001123456779999999887 89885 467899999999875
No 177
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.88 E-value=0.00021 Score=59.26 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=59.7
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc--C-C-----------------------------
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI--D-E----------------------------- 163 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~--d-~----------------------------- 163 (217)
+.+.+|+.|.-+.|++|+++.+.+.++.+. . ++.+..+-+. . +
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 467889999999999999999988876553 1 2433333210 0 0
Q ss_pred --------------cchhHHHHHHcCCCCCcEEEEEE-CCEEEEEeCCCCHHHHHHHHH
Q 027890 164 --------------YDEQSEVAERLKIKTVPLFHFYK-NGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 164 --------------~~~~~~l~~~~~I~~~Pt~~~~~-~G~~v~~~~~~~~~~l~~~l~ 207 (217)
.+++..+.+++||+++|++++-+ +|+.....|..+.++|.++|.
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 11244578899999999999886 564433336678888888774
No 178
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.86 E-value=0.00048 Score=51.32 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=79.2
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECC--CCh-hh-HHhHHHHHHHHHHhCCCCCC-EEEEEEEccCCcchhHHH
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRT--SCG-SC-KYIEQGFSKLCKGSGDQEAP-VIFLKHNVIDEYDEQSEV 170 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~--wC~-~C-~~~~p~l~~l~~~~~~~~~~-v~~~~vd~~d~~~~~~~l 170 (217)
.++++++.+.+++.=.. ++..+|-|.-. .|. .+ ..+...+.++++.+.+ + +.|+.+|. +....+
T Consensus 3 ~~~~l~~~~~~~~~C~~----~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~----~~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETCEE----KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEA----GAQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhccC----CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeC----cccHHH
Confidence 67888888877766544 56777777432 132 23 4667789999999987 6 99999999 777779
Q ss_pred HHHcCCC--CCcEEEEEECCEEEEE-e-CCCCHHHHHHHHHHhccCC
Q 027890 171 AERLKIK--TVPLFHFYKNGALVEA-F-PTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 171 ~~~~~I~--~~Pt~~~~~~G~~v~~-~-~~~~~~~l~~~l~~~~~~~ 213 (217)
.+.||+. ++|+++++...+.... + +..+.+.|.+|+++++.-.
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred HHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 9999995 4999999973322222 4 6689999999999997543
No 179
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.82 E-value=0.00027 Score=46.77 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=47.7
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~ 200 (217)
++.|..+||++|......|.+. ++.+..+|+..+ .....+....+...+|.+ |-+|+.+. ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~-~~~~~~~~~~g~~~vP~i--fi~g~~ig-----g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKD-ITGRSLRAVTGAMTVPQV--FIDGELIG-----GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCC-hhHHHHHHHhCCCCcCeE--EECCEEEe-----CHH
Confidence 5678999999999998888742 256666777322 223445556788999996 56677653 367
Q ss_pred HHHHHH
Q 027890 201 RIDAAI 206 (217)
Q Consensus 201 ~l~~~l 206 (217)
+|.++|
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 777765
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.78 E-value=0.00035 Score=63.73 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=67.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
++.-+-.|+++.|++|......+.+++...+. |..-.+|. ...++++.+|+|.++|++++ ||+.+ ..|.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~----i~~~~id~----~~~~~~~~~~~v~~VP~~~i--~~~~~-~~g~ 185 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPN----ISHTMIDG----ALFQDEVEALGIQGVPAVFL--NGEEF-HNGR 185 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC----ceEEEEEc----hhCHHHHHhcCCcccCEEEE--CCcEE-EecC
Confidence 34558889999999999999999999888664 88888999 89999999999999999875 66544 3366
Q ss_pred CCHHHHHHHHHHh
Q 027890 197 RDKERIDAAILKY 209 (217)
Q Consensus 197 ~~~~~l~~~l~~~ 209 (217)
.+.+++.+.+.+.
T Consensus 186 ~~~~~~~~~l~~~ 198 (515)
T TIGR03140 186 MDLAELLEKLEET 198 (515)
T ss_pred CCHHHHHHHHhhc
Confidence 7788887777665
No 181
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.72 E-value=0.00045 Score=50.02 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=72.4
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHH---hCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG---SGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~---~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~ 178 (217)
+.++....... +.+..+.|+ .-..-..+...+.+++++ +.+ ++.|+.+|. +......+.+|++.
T Consensus 5 t~e~~~~~~~~----~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~----~~~~~~~~~fgl~~ 71 (111)
T cd03072 5 TFENAEELTEE----GLPFLILFH--DKDDLESLKEFKQAVARQLISEKG---AINFLTADG----DKFRHPLLHLGKTP 71 (111)
T ss_pred ccccHHHHhcC----CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc---eEEEEEEec----hHhhhHHHHcCCCH
Confidence 66777777766 555555666 222336788889999999 877 699999999 76666899999997
Q ss_pred --CcEEEEEEC-CEEEEE-e-CCCCHHHHHHHHHHhcc
Q 027890 179 --VPLFHFYKN-GALVEA-F-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 --~Pt~~~~~~-G~~v~~-~-~~~~~~~l~~~l~~~~~ 211 (217)
+|.+.+... +..... . +..+.+.|.+|+++++.
T Consensus 72 ~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 72 ADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred hHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 999999863 312222 3 45789999999999874
No 182
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.70 E-value=0.00035 Score=54.16 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=29.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
.++.|+.|+...|++|+.+.+.+..+.+++++
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 68999999999999999999999999888754
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.69 E-value=0.00038 Score=49.14 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEEE----CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027890 104 AEFFKILEKSKETGSLVVVDFY----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+..++++.+ ..|+|+-. ++||++|......|.+. ++.|..+|+.++.+...++.+..|...+
T Consensus 3 ~~v~~~i~~-----~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~~~~l~~~tg~~tv 68 (97)
T TIGR00365 3 ERIKEQIKE-----NPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEIRQGIKEYSNWPTI 68 (97)
T ss_pred HHHHHHhcc-----CCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 344555543 45555544 38999999999888774 2456667874332334456666788889
Q ss_pred cEEEEEECCEEEE
Q 027890 180 PLFHFYKNGALVE 192 (217)
Q Consensus 180 Pt~~~~~~G~~v~ 192 (217)
|.+ |-+|+.+.
T Consensus 69 P~v--fi~g~~iG 79 (97)
T TIGR00365 69 PQL--YVKGEFVG 79 (97)
T ss_pred CEE--EECCEEEe
Confidence 986 46777654
No 184
>PHA03050 glutaredoxin; Provisional
Probab=97.68 E-value=0.00028 Score=50.88 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=43.3
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-CcchhHHHHHHcCCCCCcEEEEEECCEEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-EYDEQSEVAERLKIKTVPLFHFYKNGALVEA 193 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~ 193 (217)
++.|..+|||+|+.....|.+..-.... +..+.+|-.+ ..+...++.+..|...+|++ |-+|+.+.-
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~----~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iGG 82 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA----YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIGG 82 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC----cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEeC
Confidence 6679999999999999888876443222 4444433211 11224456677788999997 456776643
No 185
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.67 E-value=0.00045 Score=47.98 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=42.6
Q ss_pred CCeEEEEEEC----CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 117 GSLVVVDFYR----TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 117 ~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
+.+|+|+-.. +||++|+.....|.+.. +.|..+|+..+.+...++.+..|-..+|.+ |.+|+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG 75 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG 75 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 3566655443 79999999998887752 445556663322334556666788899996 45787653
No 186
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.67 E-value=0.0003 Score=46.71 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=43.7
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
++.|+.+||++|+.....|++. ++.+..+|+..+.+...++.+..+-..+|++ |-+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5678899999999999888863 3566677873332334567777788889987 45677654
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.64 E-value=0.00036 Score=46.29 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=41.1
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC-CCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK-TVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~-~~Pt~~~~~~G~~v~ 192 (217)
++.|+.+||++|......|.+. ++.+..+|+..+.+...++.+..+.. ++|++ |-+|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 4678999999999999888763 25666677732212234455566776 89976 46676553
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.61 E-value=0.00024 Score=47.83 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=40.8
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
++.|+.+||++|......|++. ++.+-.+|+..+.....++.+..+..++|++ |-+|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 3568899999999999988763 2445555662221233455666688899996 45676553
No 189
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.60 E-value=0.0031 Score=46.10 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=74.2
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHH-HHhCCCCCCEEEEEEEccCCc-chhHHHHHHc
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLC-KGSGDQEAPVIFLKHNVIDEY-DEQSEVAERL 174 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~-~~~~~~~~~v~~~~vd~~d~~-~~~~~l~~~~ 174 (217)
.+.+ +.-+|+++|.. .+.+||.|=... |--.-+..|.+++ +.... ..++.++.|.+.|.. .++.+|+++|
T Consensus 6 ~v~L-D~~tFdKvi~k----f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~-~~dLLvAeVGikDYGek~N~~Laery 77 (126)
T PF07912_consen 6 CVPL-DELTFDKVIPK----FKYVLVKFDVAY--PYGEKHDAFKKLAKEASAS-SDDLLVAEVGIKDYGEKENMELAERY 77 (126)
T ss_dssp SEEE-STTHHHHHGGG----SSEEEEEEEESS----CHHHHHHHHHHHHHHCC--SSEEEEEEECBSSSS-CCHHHHHHT
T ss_pred eeec-cceehhheecc----CceEEEEEeccC--CCcchHHHHHHHHHHHhcC-CCceEEEEeCcccccchhHHHHHHHh
Confidence 3444 67799999987 799999997544 2223345678888 43332 457999999887632 3678999999
Q ss_pred CC--CCCcEEEEEEC--CEEEEE--eCCCCHHHHHHHHHHhcc
Q 027890 175 KI--KTVPLFHFYKN--GALVEA--FPTRDKERIDAAILKYTS 211 (217)
Q Consensus 175 ~I--~~~Pt~~~~~~--G~~v~~--~~~~~~~~l~~~l~~~~~ 211 (217)
+| ..+|.+++|.+ .+.+.. .+..+.+.|++|+..+.+
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 99 66899999973 255655 466899999999998854
No 190
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.00061 Score=53.74 Aligned_cols=104 Identities=18% Similarity=0.300 Sum_probs=78.1
Q ss_pred CCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027890 93 PVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 93 ~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~ 172 (217)
..+.|.+| +..+|.+-+..|.+ +-.|+|+.|...-+.|.-+...|+.++.+|++ +.|+++=.++- ..
T Consensus 89 kfG~V~~I-Sg~dyv~EVT~As~-gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c-------Ip 155 (240)
T KOG3170|consen 89 KFGEVFPI-SGPDYVKEVTKASE-GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC-------IP 155 (240)
T ss_pred cccceeec-cchHHHHHHHhccC-ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc-------cC
Confidence 35788888 66777777766653 78999999999999999999999999999998 89998854221 11
Q ss_pred HcCCCCCcEEEEEECCEEEEEe------CC--CCHHHHHHHHHHh
Q 027890 173 RLKIKTVPLFHFYKNGALVEAF------PT--RDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~~~Pt~~~~~~G~~v~~~------~~--~~~~~l~~~l~~~ 209 (217)
.|-=..+||+++|..|.+...+ || .+.+++..+|-+.
T Consensus 156 NYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 156 NYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 2333578999999888765554 44 4677777666543
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.59 E-value=0.00011 Score=52.04 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=38.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhH----HHHHHcCCCCCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQS----EVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~----~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
++.|..+||++|......|.+.. +.+..+|+... +... .+.+..|...+|.+ |-+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~---------i~~~~vdid~~-~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG---------VNPAVHEIDKE-PAGKDIENALSRLGCSPAVPAV--FVGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CCCEEEEcCCC-ccHHHHHHHHHHhcCCCCcCeE--EECCEEEc
Confidence 55699999999999998777652 33334555211 1212 34455578899996 56776554
No 192
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.52 E-value=0.0016 Score=47.11 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=67.4
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEEC---CCChhhHHhHHHHHHHHHHhC-CCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSG-DQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a---~wC~~C~~~~p~l~~l~~~~~-~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~ 177 (217)
|.++...... .+.+++++-. ..-..-..+...+.++++.+. + ++.|+.+|. +......+.||+.
T Consensus 5 ~~en~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~----~~~~~~l~~fgl~ 72 (111)
T cd03073 5 TKDNRAQFTK-----KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADK----EDFSHELEEFGLD 72 (111)
T ss_pred ccchHHHhcc-----CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcH----HHHHHHHHHcCCC
Confidence 5566665542 3444444323 233444678889999999998 6 699999999 7766789999998
Q ss_pred C----CcEEEEEE-CCEEEEEe-CCC-CHHHHHHHHHHh
Q 027890 178 T----VPLFHFYK-NGALVEAF-PTR-DKERIDAAILKY 209 (217)
Q Consensus 178 ~----~Pt~~~~~-~G~~v~~~-~~~-~~~~l~~~l~~~ 209 (217)
. +|++.++. ++ ..... +.. +.+.|.+|++++
T Consensus 73 ~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 73 FSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred cccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 4 99999987 44 22213 456 889999999875
No 193
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.47 E-value=0.0012 Score=53.03 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEE
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKH 158 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~v 158 (217)
+++-||+|+.-.|++|..+.+.+ ..+.+.+++ ++.++++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEe
Confidence 46779999999999999999876 777777765 3455443
No 194
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00083 Score=56.41 Aligned_cols=109 Identities=19% Similarity=0.294 Sum_probs=84.5
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECC----CChhhHHhHHHHHHHHHHhCCCC-----CCEEEEEEEccCCcch
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQE-----APVIFLKHNVIDEYDE 166 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~----wC~~C~~~~p~l~~l~~~~~~~~-----~~v~~~~vd~~d~~~~ 166 (217)
.|+.+ +++.|..++... ..+-.++|.|.|. .|.-|+....++.-++..+.... .++-|..||. ++
T Consensus 41 ~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~----~e 114 (331)
T KOG2603|consen 41 GVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDY----DE 114 (331)
T ss_pred CeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEec----cc
Confidence 56666 789999999843 3466788888875 69999999999999988654322 2688999999 88
Q ss_pred hHHHHHHcCCCCCcEEEEEE--CCEEEEEe------CCCCHHHHHHHHHHhc
Q 027890 167 QSEVAERLKIKTVPLFHFYK--NGALVEAF------PTRDKERIDAAILKYT 210 (217)
Q Consensus 167 ~~~l~~~~~I~~~Pt~~~~~--~G~~v~~~------~~~~~~~l~~~l~~~~ 210 (217)
.+++.++++++.+|++++|. .|++.... -|...|.+.+|++...
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence 99999999999999999993 44444221 2455899999998765
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.43 E-value=0.0011 Score=45.49 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=44.6
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc----------------------------hhHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD----------------------------EQSEVAE 172 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~----------------------------~~~~l~~ 172 (217)
|+.|+.+.|++|..+.+.+.++.....+ ++.+..+.+.-... .+..++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4689999999999999999998755544 45555554321111 1235678
Q ss_pred HcCCCCCcEEEEEE
Q 027890 173 RLKIKTVPLFHFYK 186 (217)
Q Consensus 173 ~~~I~~~Pt~~~~~ 186 (217)
++|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 89999999998754
No 196
>PRK10638 glutaredoxin 3; Provisional
Probab=97.42 E-value=0.00088 Score=45.64 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=42.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
++.|..+||++|+.....|++. ++.+..+|+..+.+...++.+..+...+|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4568889999999999888763 2455566773322234566677788899986 45787664
No 197
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.38 E-value=0.0028 Score=44.64 Aligned_cols=101 Identities=15% Similarity=0.268 Sum_probs=74.9
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+..|.+..+|.+++.- ...|+|.|..+--..-..+ ..+.++++...+ .-+++.|||.+ .+...||+++.|
T Consensus 3 ie~i~d~KdfKKLLRT----r~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG---~gT~~~vdCgd--~e~kKLCKKlKv 72 (112)
T cd03067 3 IEDISDHKDFKKLLRT----RNNVLVLYSKSAKSAEALL-KLLSDVAQAVKG---QGTIAWIDCGD--SESRKLCKKLKV 72 (112)
T ss_pred cccccchHHHHHHHhh----cCcEEEEEecchhhHHHHH-HHHHHHHHHhcC---ceeEEEEecCC--hHHHHHHHHHcc
Confidence 3456788999999986 6778887776654444443 478888888777 57889999965 568899999999
Q ss_pred C----CCcE-EEEEECCEEEEEe-CCCCHHHHHHHHH
Q 027890 177 K----TVPL-FHFYKNGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 177 ~----~~Pt-~~~~~~G~~v~~~-~~~~~~~l~~~l~ 207 (217)
. --|. +..|++|..-..+ -..+...|..|+.
T Consensus 73 ~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 73 DPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CCCCCCCcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 8 5553 5567899876666 4567788888875
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00047 Score=63.57 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=61.5
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC---
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--- 175 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~--- 175 (217)
+.+.|.++-++ +||++|-...+||..|..|... |+ ++++.+.. .++-++||- ++-+++-+.|.
T Consensus 32 ~~eAf~~A~~e----dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDR----EERPDvD~~Ym~~~ 100 (667)
T COG1331 32 GEEAFAKAKEE----DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDR----EERPDVDSLYMNAS 100 (667)
T ss_pred CHHHHHHHHHh----CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeECh----hhccCHHHHHHHHH
Confidence 45666666555 9999999999999999998765 32 45555554 588889998 77776666553
Q ss_pred -----CCCCcEEEEEE-CCEEEEEe
Q 027890 176 -----IKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 176 -----I~~~Pt~~~~~-~G~~v~~~ 194 (217)
-.++|..+|+. +|+++...
T Consensus 101 q~~tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 101 QAITGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred HHhccCCCCceeEEECCCCceeeee
Confidence 56899988885 89887543
No 199
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.25 E-value=0.0028 Score=43.10 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=56.5
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECC---EEEEEeCCC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNG---ALVEAFPTR 197 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G---~~v~~~~~~ 197 (217)
|+.|..+.|+-|..+...+..+.... .+.+-.||+ ++++++..+|+. .+|.+.+-..+ ....-....
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI----~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDI----DEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRF 71 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEET----TTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEEC----CCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCC
Confidence 67899999999999999988865543 388999999 888899999995 79985543210 112222567
Q ss_pred CHHHHHHHHH
Q 027890 198 DKERIDAAIL 207 (217)
Q Consensus 198 ~~~~l~~~l~ 207 (217)
+.+.|.+||+
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8999999885
No 200
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.23 E-value=0.0029 Score=51.57 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCCCCCcceeecCCHH--HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC--c
Q 027890 89 DDLCPVECVREFKTDA--EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE--Y 164 (217)
Q Consensus 89 ~~~~~~~~v~~i~s~~--~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~--~ 164 (217)
+..+|...++.+.... .+-+..+ .++|+||.|.+-.||+=+.-.+.+.+++++|.+ .+.|+-|-+... .
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~----g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d---~adFl~VYI~EAHps 148 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAK----GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD---VADFLIVYIEEAHPS 148 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhcc----CCCCeEEEcccccchHHHHHHHHHHHHHHHhhh---hhheehhhHhhhCcC
Confidence 4456666777774433 2334443 389999999999999999999999999999987 344555543110 0
Q ss_pred ------------ch----------------------------hHHHHHHcCCCCCcE-EEEEECCEEEEEeC----CCCH
Q 027890 165 ------------DE----------------------------QSEVAERLKIKTVPL-FHFYKNGALVEAFP----TRDK 199 (217)
Q Consensus 165 ------------~~----------------------------~~~l~~~~~I~~~Pt-~~~~~~G~~v~~~~----~~~~ 199 (217)
.. +......|+ .+|. ++++++|+++..-| +.+.
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~ 226 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSP 226 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCH
Confidence 00 111122222 4674 55668999777652 4789
Q ss_pred HHHHHHHHHh
Q 027890 200 ERIDAAILKY 209 (217)
Q Consensus 200 ~~l~~~l~~~ 209 (217)
+++++||+++
T Consensus 227 ~e~r~~L~~~ 236 (237)
T PF00837_consen 227 EELREWLEKY 236 (237)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 201
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.18 E-value=0.0066 Score=55.96 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++.+.+..- .+...|+.|+.+.|..|..+...+++++..- + ++.+...|. ..+.+++++|++...|++
T Consensus 354 ~~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~---~i~~~~~~~----~~~~~~~~~~~v~~~P~~ 423 (555)
T TIGR03143 354 RQQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASLS-E---KLNSEAVNR----GEEPESETLPKITKLPTV 423 (555)
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhcC-C---cEEEEEecc----ccchhhHhhcCCCcCCEE
Confidence 35577777653 2555677888889999999999999998643 3 588888887 778899999999999999
Q ss_pred EEEE-CCEE--EEEeCCCCHHHHHHHHHHh
Q 027890 183 HFYK-NGAL--VEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~-~G~~--v~~~~~~~~~~l~~~l~~~ 209 (217)
.+++ +|+. +.++|--.=.++..+|...
T Consensus 424 ~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 424 ALLDDDGNYTGLKFHGVPSGHELNSFILAL 453 (555)
T ss_pred EEEeCCCcccceEEEecCccHhHHHHHHHH
Confidence 9995 6543 4444322223444444433
No 202
>PRK10824 glutaredoxin-4; Provisional
Probab=97.07 E-value=0.0031 Score=45.92 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEEC----CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027890 104 AEFFKILEKSKETGSLVVVDFYR----TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+-.++++.+ .+|+|+--. ||||+|+.....|.++. +.+..+|+.++.+....+.+.-|-..+
T Consensus 6 ~~v~~~I~~-----~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TV 71 (115)
T PRK10824 6 EKIQRQIAE-----NPILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTF 71 (115)
T ss_pred HHHHHHHhc-----CCEEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCC
Confidence 445555554 455554333 69999999998887763 223334552221233445555577788
Q ss_pred cEEEEEECCEEEEE
Q 027890 180 PLFHFYKNGALVEA 193 (217)
Q Consensus 180 Pt~~~~~~G~~v~~ 193 (217)
|. +|-+|+.++-
T Consensus 72 PQ--IFI~G~~IGG 83 (115)
T PRK10824 72 PQ--LWVDGELVGG 83 (115)
T ss_pred Ce--EEECCEEEcC
Confidence 87 4568877754
No 203
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.014 Score=44.78 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC
Q 027890 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK 177 (217)
Q Consensus 116 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~-----------------~~~~~~l~~~~~I~ 177 (217)
.+++||++|| ..|++.|-...-.|.+...++... ++.++.|-.... .|...++++.||+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 3789999999 778999988888888887777653 566666654221 35666788888873
Q ss_pred C------------CcEEEEEE-CCEEEEEeC----CCCHHHHHHHHHHhc
Q 027890 178 T------------VPLFHFYK-NGALVEAFP----TRDKERIDAAILKYT 210 (217)
Q Consensus 178 ~------------~Pt~~~~~-~G~~v~~~~----~~~~~~l~~~l~~~~ 210 (217)
. .++.++++ +|++...+. .-..++++++|.++.
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence 3 46667775 898887772 245677888777653
No 204
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.95 E-value=0.017 Score=41.11 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=64.5
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+.++.+.+++++++.. ++.++|-|+..--. .....+.+++..+.+ .+.|+... ...+...+++
T Consensus 2 ~~~i~s~~~l~~f~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~-------~~~~~~~~~~ 64 (104)
T cd03069 2 SVELRTEAEFEKFLSD----DDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTS-------DKQLLEKYGY 64 (104)
T ss_pred ccccCCHHHHHHHhcc----CCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEEC-------hHHHHHhcCC
Confidence 4567788999998875 56666666655443 456678888888865 47886643 3567788888
Q ss_pred CCCcEEEEEEC--------CEEEEEeCCCCHHHHHHHHHHh
Q 027890 177 KTVPLFHFYKN--------GALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 177 ~~~Pt~~~~~~--------G~~v~~~~~~~~~~l~~~l~~~ 209 (217)
.|++++|+. -..+.+.|..+.+.|.+||..+
T Consensus 65 --~~~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 65 --GEGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred --CCceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 688888831 1222223557789999999864
No 205
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0041 Score=42.24 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=44.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHHHHHc-CCCCCcEEEEEECCEEEEEeCCCC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERL-KIKTVPLFHFYKNGALVEAFPTRD 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~-~~~~l~~~~-~I~~~Pt~~~~~~G~~v~~~~~~~ 198 (217)
++.|..+|||+|++....|.+. ++.|..+|+.+... +..+..++. |...+|.++ -+|+.+. ++.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~~ig--g~~d 69 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGKHVG--GCDD 69 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCEEEe--Cccc
Confidence 5678899999999998888732 36666666643211 233555555 789999865 4565222 3345
Q ss_pred HHHHH
Q 027890 199 KERID 203 (217)
Q Consensus 199 ~~~l~ 203 (217)
.+++.
T Consensus 70 ~~~~~ 74 (80)
T COG0695 70 LDALE 74 (80)
T ss_pred HHHHH
Confidence 55554
No 206
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.90 E-value=0.026 Score=39.89 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=65.8
Q ss_pred eeecCCHHHHHHHHH-hhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 97 VREFKTDAEFFKILE-KSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~-~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
+..|.+.+++++++. . +..++|-|+..--. .....|.+++..+.+ .+.|+... ..++...++
T Consensus 2 v~~i~~~~~~e~~~~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~-------~~~~~~~~~ 64 (102)
T cd03066 2 VEIINSERELQAFENIE----DDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF-------DSKVAKKLG 64 (102)
T ss_pred ceEcCCHHHHHHHhccc----CCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC-------cHHHHHHcC
Confidence 466788999999997 5 56666666655444 355678888888855 47886533 356677887
Q ss_pred CCCCcEEEEEEC-CEEEEEe-C-CCCHHHHHHHHHHh
Q 027890 176 IKTVPLFHFYKN-GALVEAF-P-TRDKERIDAAILKY 209 (217)
Q Consensus 176 I~~~Pt~~~~~~-G~~v~~~-~-~~~~~~l~~~l~~~ 209 (217)
+. .|.++++++ ......+ + ..+.+.|.+||...
T Consensus 65 ~~-~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 65 LK-MNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CC-CCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 75 699999964 3333334 4 46899999999864
No 207
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.54 E-value=0.036 Score=42.84 Aligned_cols=68 Identities=19% Similarity=0.096 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEEC--CEEEEEeCC-CCHHHHHHHHHHhcc
Q 027890 135 IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKN--GALVEAFPT-RDKERIDAAILKYTS 211 (217)
Q Consensus 135 ~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~--G~~v~~~~~-~~~~~l~~~l~~~~~ 211 (217)
+...|.++++.+.+ .+.|+.+.- .++++++++.. |++++|++ ++.+.+.+. .+.++|.+||....-
T Consensus 8 ~~~~f~~~A~~~~~---~~~F~~~~~-------~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 8 LFEIFEEAAEKLKG---DYQFGVTFN-------EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHTT---TSEEEEEE--------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcC---CcEEEEEcH-------HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 45678899999986 588888653 66899999998 99999985 445666665 799999999999876
Q ss_pred CC
Q 027890 212 TT 213 (217)
Q Consensus 212 ~~ 213 (217)
|.
T Consensus 77 P~ 78 (184)
T PF13848_consen 77 PL 78 (184)
T ss_dssp TS
T ss_pred cc
Confidence 54
No 208
>PTZ00062 glutaredoxin; Provisional
Probab=96.46 E-value=0.021 Score=45.89 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=39.9
Q ss_pred CeEEEEEE----CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 118 SLVVVDFY----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 118 k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
.+|+|+-- .|||++|+.+...|.+. ++.+..+|+.+..+....+.+..+...+|.++ -+|+.+.
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~~IG 180 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSS---------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGELIG 180 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHc---------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCEEEc
Confidence 45555333 37999999998888754 25666778743322333445555667788754 5777664
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.01 E-value=0.022 Score=50.63 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=40.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH---------cCCCCCcEEEEEECCEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER---------LKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~---------~~I~~~Pt~~~~~~G~~v 191 (217)
|+.|..+||++|......|.+. ++.+-.+|+.+. ....++..+ .|..++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6679999999999998887774 366777888321 222233222 46788999854 66654
Q ss_pred E
Q 027890 192 E 192 (217)
Q Consensus 192 ~ 192 (217)
.
T Consensus 72 g 72 (410)
T PRK12759 72 G 72 (410)
T ss_pred e
Confidence 3
No 210
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.87 E-value=0.52 Score=35.34 Aligned_cols=103 Identities=5% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHhh----hcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcch-----------
Q 027890 105 EFFKILEKS----KETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDE----------- 166 (217)
Q Consensus 105 ~f~~~l~~a----~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~vd~~d~~~~----------- 166 (217)
.|.++++.| +++.|+.+|+.+.+.-..+..+-..+ +.+.+-+.. ++.+...|+++....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~---nfv~Wg~dvt~~~~~~~fl~~~~~~~ 81 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ---NFITWGWDMTKESNKARFLSSCTRHF 81 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc---CEEEEeeeccchhhhhHHHHhhhhhh
Confidence 466677766 77899999999998774443333221 122222222 588888898552111
Q ss_pred ---hHHHHHHcCCCCCcEEEEEE-C-C--EEEEEe-CCCCHHHHHHHHHHhc
Q 027890 167 ---QSEVAERLKIKTVPLFHFYK-N-G--ALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 167 ---~~~l~~~~~I~~~Pt~~~~~-~-G--~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
.....+.++...+|.+.++- . + .++.++ |..++++|...|....
T Consensus 82 g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 82 GSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred hHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 22356678899999999883 2 2 566776 6689999998887754
No 211
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.69 E-value=0.44 Score=34.03 Aligned_cols=95 Identities=9% Similarity=0.132 Sum_probs=61.5
Q ss_pred eeecCCHHHHHHHHHhhhcCC-CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027890 97 VREFKTDAEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~-k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~ 175 (217)
+.+|.+.+++++++.. . +.++|-|+..--. .....+.+++..+.+ .+.|+... ...+..+++
T Consensus 2 v~~i~s~~ele~f~~~----~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~-------~~~~~~~~~ 64 (107)
T cd03068 2 SKQLQTLKQVQEFLRD----GDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF-------DSEIFKSLK 64 (107)
T ss_pred ceEcCCHHHHHHHHhc----CCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC-------hHHHHHhcC
Confidence 4677889999998876 4 6777767665443 455678888888866 58886543 356778888
Q ss_pred CCCCcEEEEEE--------CCEEEEEeCC-CCH-HHHHHHHHHh
Q 027890 176 IKTVPLFHFYK--------NGALVEAFPT-RDK-ERIDAAILKY 209 (217)
Q Consensus 176 I~~~Pt~~~~~--------~G~~v~~~~~-~~~-~~l~~~l~~~ 209 (217)
+. .|.+++|+ +-+...+-+. ... ++|..||.++
T Consensus 65 ~~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 65 VS-PGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CC-CCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 76 46677772 2222222222 344 4499999763
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.089 Score=37.59 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-chhHHHHHHcCCCCCcEE
Q 027890 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~-~~~~~l~~~~~I~~~Pt~ 182 (217)
+...+++.+ .+|+ .|..+||++|+.+...|.+ +.. ...++.+|-..+. +-...+.+--+-..+|.+
T Consensus 5 ~~v~~~i~~-----~~VV-ifSKs~C~~c~~~k~ll~~----~~v---~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v 71 (104)
T KOG1752|consen 5 AKVRKMISE-----NPVV-IFSKSSCPYCHRAKELLSD----LGV---NPKVVELDEDEDGSEIQKALKKLTGQRTVPNV 71 (104)
T ss_pred HHHHHHhhc-----CCEE-EEECCcCchHHHHHHHHHh----CCC---CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE
Confidence 345566654 4444 4899999999998877777 332 4677777763211 111223333345688874
Q ss_pred EEEECCEEEE
Q 027890 183 HFYKNGALVE 192 (217)
Q Consensus 183 ~~~~~G~~v~ 192 (217)
|-+|+.+.
T Consensus 72 --FI~Gk~iG 79 (104)
T KOG1752|consen 72 --FIGGKFIG 79 (104)
T ss_pred --EECCEEEc
Confidence 46787773
No 213
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.18 E-value=0.13 Score=40.27 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCC
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
.|.-|+|+.|-.+.|.|.++..+++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999987
No 214
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.64 E-value=0.47 Score=31.41 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=43.0
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~ 201 (217)
..++.++|+.|++..-.+.... +.+-.+++........++.+...-..+|+++.-.+|..+. +...
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g---------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~-----es~~ 68 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE---------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF-----ESAD 68 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC---------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE-----cHHH
Confidence 4567789999998876666542 3333345422111234555555667899875322454433 5667
Q ss_pred HHHHHHHh
Q 027890 202 IDAAILKY 209 (217)
Q Consensus 202 l~~~l~~~ 209 (217)
|.++|.+.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 77777653
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.58 E-value=0.13 Score=39.03 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=39.5
Q ss_pred EEEEECC------CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC----CCCcEEEEEECCEE
Q 027890 121 VVDFYRT------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI----KTVPLFHFYKNGAL 190 (217)
Q Consensus 121 lV~F~a~------wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I----~~~Pt~~~~~~G~~ 190 (217)
||.|.++ +|++|......|+.+ +|.|-.+|+....+...+|.+.++- ..+|.++ -+|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEE
Confidence 3456666 999999998888764 3677788883222234456666564 5778744 56766
Q ss_pred EE
Q 027890 191 VE 192 (217)
Q Consensus 191 v~ 192 (217)
+.
T Consensus 71 IG 72 (147)
T cd03031 71 LG 72 (147)
T ss_pred Ee
Confidence 64
No 216
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.58 E-value=0.46 Score=41.90 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=69.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HHH-HHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FSK-LCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~~-l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
++-++|..++. ++.++|.|-+........|... |.. .....- ...++.++|+... .....+..-|-+..+|.+
T Consensus 7 nipeAIa~aK~-kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l--s~~fVaIkiqags--~aa~qFs~IYp~v~vPs~ 81 (506)
T KOG2507|consen 7 NIPEAIAEAKG-KKALFVVYISGDDEESDKLNRLTWTDASVSDSL--SKYFVAIKIQAGS--VAATQFSAIYPYVSVPSI 81 (506)
T ss_pred chHHHHHHhhc-CCeEEEEEEecCchHhhHHhhccchhhhhhhhh--hcceEEEEeccCc--hhhhhhhhhcccccccce
Confidence 45567777664 6677777778777777777732 333 222211 1246667776622 456678889999999999
Q ss_pred EEE-ECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 183 HFY-KNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 183 ~~~-~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
+|+ +.|.++... |....++|..-|++..
T Consensus 82 ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 82 FFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred eeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 999 499999999 5567888888777653
No 217
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.56 E-value=0.032 Score=39.64 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=45.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEE-CCEEEEEe-----C
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYK-NGALVEAF-----P 195 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~-~G~~v~~~-----~ 195 (217)
..|+.++|+.|+.....|++. ++.|-.+|+.++.....++..-++-.+.+.--++. .|...... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH---------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence 568999999999998777763 24555666633223334444444433433333443 44333222 3
Q ss_pred CCCHHHHHHHHHHh
Q 027890 196 TRDKERIDAAILKY 209 (217)
Q Consensus 196 ~~~~~~l~~~l~~~ 209 (217)
..+.+++.++|.++
T Consensus 73 ~ls~~e~~~~l~~~ 86 (105)
T cd02977 73 ELSDEEALELMAEH 86 (105)
T ss_pred CCCHHHHHHHHHhC
Confidence 46778888888765
No 218
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.53 E-value=0.013 Score=49.45 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=69.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
..++=+.||+.||+..+..+|.+.-....+.. +....++ +....+.+..+|++.+.|++.+...--...+.+.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~ve---e~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVE---ESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc----cccccHH---HHhhcccchhccccccCCcceeeccccchhhccc
Confidence 57888999999999999999999888887763 3333332 2245677889999999999998876555556688
Q ss_pred CCHHHHHHHHHHhcc
Q 027890 197 RDKERIDAAILKYTS 211 (217)
Q Consensus 197 ~~~~~l~~~l~~~~~ 211 (217)
++...|+++..+.+.
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999988874
No 219
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.48 E-value=0.11 Score=39.61 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=45.8
Q ss_pred CeEEEEEECCCChhhHHh-HHHHHHHHHHhCCCCCCE-EEEEEEccCC-------------------cchhHHHHHHcCC
Q 027890 118 SLVVVDFYRTSCGSCKYI-EQGFSKLCKGSGDQEAPV-IFLKHNVIDE-------------------YDEQSEVAERLKI 176 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~v-~~~~vd~~d~-------------------~~~~~~l~~~~~I 176 (217)
..+|+.|.+.||+.|... .+.|.+..+++... ++ .++.|...+. .|.+.++++.||+
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 444455559999999988 88898888887643 23 3444543110 1344567777776
Q ss_pred C------C-----CcEEEEEECCEEEEEe
Q 027890 177 K------T-----VPLFHFYKNGALVEAF 194 (217)
Q Consensus 177 ~------~-----~Pt~~~~~~G~~v~~~ 194 (217)
. + ...++++++|++...+
T Consensus 109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~ 137 (155)
T cd03013 109 TLDLSAAGGGIRSKRYALIVDDGKVKYLF 137 (155)
T ss_pred CccccccCCcceeeeEEEEECCCEEEEEE
Confidence 2 1 2344555677666554
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.34 E-value=0.39 Score=31.61 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=44.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEE--CCEEEEEeCCCC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYK--NGALVEAFPTRD 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~--~G~~v~~~~~~~ 198 (217)
+..|+.++|+.|++..-.+....-. +.+..+|. ....++ +.-+...+|+++.-. +|..+. +
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~-------y~~~~~~~----~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----e 64 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP-------YEVVEVNP----VSRKEI-KWSSYKKVPILRVESGGDGQQLV-----D 64 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc-------eEEEECCc----hhHHHH-HHhCCCccCEEEECCCCCccEEE-----c
Confidence 3457889999999988665554222 33333333 222334 334567899887542 354443 5
Q ss_pred HHHHHHHHHHhcc
Q 027890 199 KERIDAAILKYTS 211 (217)
Q Consensus 199 ~~~l~~~l~~~~~ 211 (217)
-..|.++|++.++
T Consensus 65 S~~I~~yL~~~~~ 77 (77)
T cd03040 65 SSVIISTLKTYLG 77 (77)
T ss_pred HHHHHHHHHHHcC
Confidence 6678888887753
No 221
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.97 E-value=0.075 Score=38.29 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=46.1
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEE-CCEEEEEe------
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYK-NGALVEAF------ 194 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~-~G~~v~~~------ 194 (217)
..|+.++|+.|+.....|++. ++.|-.+|+..+.....++..-++..+.|.--+++ .|......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccccc
Confidence 468899999999998777763 25566666633323344444444444455555553 44433222
Q ss_pred CCCCHHHHHHHHHHh
Q 027890 195 PTRDKERIDAAILKY 209 (217)
Q Consensus 195 ~~~~~~~l~~~l~~~ 209 (217)
.+.+.+++.++|.++
T Consensus 73 ~~~s~~e~~~~l~~~ 87 (111)
T cd03036 73 PSLSEEEALELLSSD 87 (111)
T ss_pred ccCCHHHHHHHHHhC
Confidence 234567777777664
No 222
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=92.77 E-value=3.1 Score=30.87 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=58.0
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHH-hHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKY-IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
...+++|.++.++++... ....|| +-.+-||=--. .+|-...... +.. . .=.++.|=...+ .+..+-++.|
T Consensus 17 Gf~eL~T~e~Vd~~~~~~---~GTtlV-vVNSVCGCAag~ARPa~~~al~-~~k-k-PD~lvTVFAGqD-kEAt~~aR~y 88 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNK---EGTTLV-VVNSVCGCAAGNARPAAAMALQ-NDK-K-PDHLVTVFAGQD-KEATAKAREY 88 (136)
T ss_dssp T-EE--SHHHHHHHHHH-----SEEEE-EEE-SSHHHHHTHHHHHHHHHH-HSS----SEEEEEETTTS-HHHHHHHHHT
T ss_pred CccccCCHHHHHHHHhCC---CCcEEE-EEeccccccccccCHHHHHHHh-CCC-C-CCceEEeccCCC-HHHHHHHHHh
Confidence 567889999999999952 445554 44677763333 3444333222 221 1 113444433221 1223345555
Q ss_pred CC---CCCcEEEEEECCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027890 175 KI---KTVPLFHFYKNGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I---~~~Pt~~~~~~G~~v~~~-----~~~~~~~l~~~l~~~~ 210 (217)
-. .+-|++.+||+|++++.+ .|++.+.|.+-|....
T Consensus 89 f~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 89 FEPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp STTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred cCCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 43 456899999999999876 5788888877776553
No 223
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.58 E-value=0.59 Score=30.19 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=37.9
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHH
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERI 202 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l 202 (217)
.++.++|++|++..-.+....- .+..+.++. .......+..+-..+|++. ..+|..+. +...|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl-------~~~~~~~~~----~~~~~~~~~~~~~~vP~L~-~~~~~~l~-----es~aI 65 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI-------PVEQIILQN----DDEATPIRMIGAKQVPILE-KDDGSFMA-----ESLDI 65 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC-------CeEEEECCC----CchHHHHHhcCCCccCEEE-eCCCeEee-----hHHHH
Confidence 4678899999987766554422 233434443 3222333444556789874 24465443 44556
Q ss_pred HHHHH
Q 027890 203 DAAIL 207 (217)
Q Consensus 203 ~~~l~ 207 (217)
.++|.
T Consensus 66 ~~yL~ 70 (71)
T cd03037 66 VAFID 70 (71)
T ss_pred HHHHh
Confidence 66654
No 224
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=2 Score=34.98 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=28.9
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 166 EQSEVAERLKIKTVPLFHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
.+..++.++||.++||+++- |+ .+ |..+.++|.+.|....
T Consensus 203 ~~~~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 203 KNYKLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 44567889999999997763 33 33 4466889988887653
No 225
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.03 E-value=0.68 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=28.8
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027890 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (217)
|.++|.|.-|.|+-|......+.++..+| .+++||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY-------~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY-------DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc-------cEEEEEe
Confidence 56889999999999999999887776654 4556654
No 226
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.84 E-value=0.89 Score=30.16 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=47.7
Q ss_pred EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEE
Q 027890 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184 (217)
Q Consensus 120 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~ 184 (217)
.+..|-+..-+..+.....+.++.+++-+ ..+.+--||+ .++++++..++|-.+||++-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv----~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDV----LKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEc----ccCHhHHhhCCEEEechhhh
Confidence 45556666668888888888888887642 2688888999 99999999999999999763
No 227
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=91.74 E-value=1.3 Score=36.73 Aligned_cols=96 Identities=17% Similarity=0.325 Sum_probs=62.2
Q ss_pred CCeEEEEEECCCChh-hHHhHHHHHHHHHHhCCCCC---CEEEEEEEccCC----------------------cchhHHH
Q 027890 117 GSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQEA---PVIFLKHNVIDE----------------------YDEQSEV 170 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~---~v~~~~vd~~d~----------------------~~~~~~l 170 (217)
++.+|++|.=+.||. |-.....+.+..++...... -=.|+.||-.-+ .++-..+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 899999999999974 65544444444443332111 126777774110 2345577
Q ss_pred HHHcCCCCCc-------------EEEEE--E-CCEEEEEeC-CCCHHHHHHHHHHhccC
Q 027890 171 AERLKIKTVP-------------LFHFY--K-NGALVEAFP-TRDKERIDAAILKYTST 212 (217)
Q Consensus 171 ~~~~~I~~~P-------------t~~~~--~-~G~~v~~~~-~~~~~~l~~~l~~~~~~ 212 (217)
|+.|.|..-+ ++++| . +|+.+..+| ..+++++.+-|.++..+
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 8888774333 33444 3 899999995 58999999999888654
No 228
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=91.48 E-value=2.7 Score=30.32 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
-++.+.+.+.++...+-+++ |-.---+ .+.+.+..+.+-....... ..+ .-++.+.++|+|+.+|+
T Consensus 9 P~~~L~~l~~~a~~~~~~~V--~RG~~~g---~~~~t~~~~~~l~~~~~~~---~~v------~IdP~~F~~y~I~~VPa 74 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVVVV--FRGFPDG---SFKPTAKAIQELLRKDDPC---PGV------QIDPRLFRQYNITAVPA 74 (113)
T ss_pred CHHHHHHHHHHHHhCCcEEE--EECCCCC---CHHHHHHHHHHHhhccCCC---cce------eEChhHHhhCCceEcCE
Confidence 45778888888765433333 3322222 5555555555444331112 233 44689999999999999
Q ss_pred EEEEEC
Q 027890 182 FHFYKN 187 (217)
Q Consensus 182 ~~~~~~ 187 (217)
+++.++
T Consensus 75 ~V~~~~ 80 (113)
T PF09673_consen 75 FVVVKD 80 (113)
T ss_pred EEEEcC
Confidence 999887
No 229
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.07 E-value=3.9 Score=28.52 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++...++.- .+...++.|..+. ..|..+...+++++..-+ ++.+...+. +. ..|++
T Consensus 7 ~~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd----kI~~~~~~~----~~-----------~~P~~ 64 (94)
T cd02974 7 KQQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLSD----KITLEEDND----DE-----------RKPSF 64 (94)
T ss_pred HHHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC----ceEEEEecC----CC-----------CCCEE
Confidence 46677777653 2444455555555 999999999998888543 466654333 11 47999
Q ss_pred EEEECCEE--EEEeCCCCHHHHHHHHH
Q 027890 183 HFYKNGAL--VEAFPTRDKERIDAAIL 207 (217)
Q Consensus 183 ~~~~~G~~--v~~~~~~~~~~l~~~l~ 207 (217)
.+.++|+. +...|--.=.++..+|.
T Consensus 65 ~i~~~~~~~gIrF~GiP~GhEf~Slil 91 (94)
T cd02974 65 SINRPGEDTGIRFAGIPMGHEFTSLVL 91 (94)
T ss_pred EEecCCCcccEEEEecCCchhHHHHHH
Confidence 99887643 44443222234444444
No 230
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.57 E-value=0.62 Score=33.73 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=42.2
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhH---HHHHHcCCCCCcEEEEE-ECCEEEEEe---
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQS---EVAERLKIKTVPLFHFY-KNGALVEAF--- 194 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~---~l~~~~~I~~~Pt~~~~-~~G~~v~~~--- 194 (217)
..|+.++|+.|+.....|++. ++.+-.+|+.++..... ++....+. ..--++ +.|......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCch
Confidence 368899999999998777762 25666677633222223 33444442 111233 355443332
Q ss_pred ---CCCCHHHHHHHHHHh
Q 027890 195 ---PTRDKERIDAAILKY 209 (217)
Q Consensus 195 ---~~~~~~~l~~~l~~~ 209 (217)
...+.+++.++|.++
T Consensus 70 ~~~~~ls~~e~~~~i~~~ 87 (117)
T TIGR01617 70 NTFLDLSDKEALELLAED 87 (117)
T ss_pred hhcccCCHHHHHHHHHhC
Confidence 234566677766654
No 231
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=90.39 E-value=0.94 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=38.1
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
+.|+.+||++|++..-.+....- .+.+..+|.. +...++.+......+|++.. .+|..+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-------~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~-~~g~~l~ 61 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-------TVELREVELK---NKPAEMLAASPKGTVPVLVL-GNGTVIE 61 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-------CcEEEEeCCC---CCCHHHHHHCCCCCCCEEEE-CCCcEEe
Confidence 35788999999988765555422 2556666652 23356666666778999852 3465543
No 232
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=90.34 E-value=4.4 Score=30.12 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+.+.+.+.++.+.+-++++-=+-.. .+.+....+.+-.... .. ..+ .-++.+.++|+|+.+|++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~-----~~~~T~~~i~~L~~~~-~~---~~v------~IdP~lF~~f~I~~VPa~ 75 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN-----GFKATATRIQSLIKDG-GK---SGV------QIDPQWFKQFDITAVPAF 75 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC-----CHHHHHHHHHHHHhcC-CC---CcE------EEChHHHhhcCceEcCEE
Confidence 56677777777655655444322322 2334444444333221 11 223 446899999999999999
Q ss_pred EEEECCE
Q 027890 183 HFYKNGA 189 (217)
Q Consensus 183 ~~~~~G~ 189 (217)
++.+++.
T Consensus 76 V~~~~~~ 82 (130)
T TIGR02742 76 VVVKDGL 82 (130)
T ss_pred EEECCCC
Confidence 9998764
No 233
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=0.86 Score=30.40 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=37.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC----------cchhHHH--HHHcCCCCCcEEEEEECCE
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE----------YDEQSEV--AERLKIKTVPLFHFYKNGA 189 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~----------~~~~~~l--~~~~~I~~~Pt~~~~~~G~ 189 (217)
+.|++..||.|..+...++++.-. +-.|+++.. .|..+++ ++..|--++|.+++ .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~---------yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD---------YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC---------ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 579999999999888777776333 333443211 1222222 56667789999765 5566
Q ss_pred EEE
Q 027890 190 LVE 192 (217)
Q Consensus 190 ~v~ 192 (217)
++-
T Consensus 75 vVl 77 (85)
T COG4545 75 VVL 77 (85)
T ss_pred EEE
Confidence 553
No 234
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=89.72 E-value=2.8 Score=26.97 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=37.6
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
..|+.++|+.|+...-.++...- .+....+|..+.....+++.+......+|++. .+|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi-------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 62 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL-------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV--DNGFVL 62 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC-------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE--ECCEEE
Confidence 35789999999987766665432 24455555422112345666666667899985 356544
No 235
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=6.4 Score=30.13 Aligned_cols=93 Identities=22% Similarity=0.346 Sum_probs=57.9
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----Ccchh---HHHH-HHcCCC----------
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EYDEQ---SEVA-ERLKIK---------- 177 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d----~~~~~---~~l~-~~~~I~---------- 177 (217)
.++.+||.=.|+-|+.--+. ..|+.|.++|.+. ++.++..=|.+ +...+ ..+| ..|||+
T Consensus 24 ~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~Vn 100 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVN 100 (162)
T ss_pred CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeec
Confidence 48999999999999987754 4688888888764 45555444321 11111 1222 234431
Q ss_pred -------------CCc-----------E--EEEEECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 178 -------------TVP-----------L--FHFYKNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 -------------~~P-----------t--~~~~~~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
..| . |++=++|+++.|+ ....++++...|++.+.
T Consensus 101 G~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 101 GKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 111 1 2222599999999 45788899998888764
No 236
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=4.7 Score=32.02 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----------C-----------cchhHHHHHH
Q 027890 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----------E-----------YDEQSEVAER 173 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-----------~-----------~~~~~~l~~~ 173 (217)
++.+++.|| ++.-.-|--....+.+...++..++-.+.-+.+|-.- . .|...++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 578888888 4555556555555666666665543334444444100 0 2557789999
Q ss_pred cCCCC------CcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027890 174 LKIKT------VPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~------~Pt~~~~~-~G~~v~~~-----~~~~~~~l~~~l~~~ 209 (217)
||+-. +=.+++++ +|.+.... .|++.+++...|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99853 22344554 77665443 389999999888765
No 237
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.93 E-value=4.7 Score=26.26 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=50.5
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHH
Q 027890 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERID 203 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~ 203 (217)
++.++|+.|++..=.+....- .+.+..++.. +...++.+...-..+|++. .+|..+. +-..|.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i-------~~~~~~v~~~---~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~ 64 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI-------PYELVPVDPE---EKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAII 64 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE-------EEEEEEEBTT---STSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC-------eEEEeccCcc---cchhHHHhhcccccceEEE--ECCEEEe-----CHHHHH
Confidence 678999999998655544322 2455555541 3356777777788899987 6687665 778899
Q ss_pred HHHHHhccC
Q 027890 204 AAILKYTST 212 (217)
Q Consensus 204 ~~l~~~~~~ 212 (217)
++|++....
T Consensus 65 ~yL~~~~~~ 73 (75)
T PF13417_consen 65 EYLEERYPG 73 (75)
T ss_dssp HHHHHHSTS
T ss_pred HHHHHHcCC
Confidence 999887654
No 238
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.82 E-value=4.5 Score=25.86 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=42.1
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~ 201 (217)
..|+.++|+.|+...-.++...-. +....+|.. ...+++.+......+|++. .+|..+. ....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~-------~~~~~v~~~---~~~~~~~~~~p~~~vP~l~--~~~~~l~-----es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS-------VEIIDVDPD---NPPEDLAELNPYGTVPTLV--DRDLVLY-----ESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc-------cEEEEcCCC---CCCHHHHhhCCCCCCCEEE--ECCEEEE-----cHHH
Confidence 457889999999987666544322 344445541 2234555555667899763 4554432 4556
Q ss_pred HHHHHHH
Q 027890 202 IDAAILK 208 (217)
Q Consensus 202 l~~~l~~ 208 (217)
|.++|.+
T Consensus 65 I~~yL~~ 71 (73)
T cd03059 65 IMEYLDE 71 (73)
T ss_pred HHHHHHh
Confidence 7676654
No 239
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.44 E-value=1.5 Score=28.05 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=37.2
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
..|+.++|++|++..-.+....-. +....++........+++.+......+|++.. .+|..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~l 63 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTVI 63 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCEE
Confidence 357788999999988776655322 34445554211122345666666678999864 345443
No 240
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=88.18 E-value=0.44 Score=34.40 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=17.7
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.++|+.|+.....|++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3468899999999988777763
No 241
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.18 E-value=0.29 Score=36.38 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.7
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.+||+.|+.....|++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999988776654
No 242
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=88.09 E-value=1.2 Score=34.45 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=29.3
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027890 166 EQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~ 207 (217)
.+...+.++||.++|++++ +|+ ....|....+.|.+.|+
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~-~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK-YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT-EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCcccCEEEE--CCE-EEEECCCCHHHHHHHhC
Confidence 4556788999999999999 777 22337778888887764
No 243
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=87.56 E-value=2.5 Score=32.85 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCeEEEEEECCCC-hhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027890 117 GSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 117 ~k~vlV~F~a~wC-~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (217)
+|+++|.|.=+.| ..|-.+...+.++.+++.....++.++.|-+
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv 96 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV 96 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe
Confidence 8999999999999 6788777777777776654334677777766
No 244
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.33 E-value=9.4 Score=34.90 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++.+.++.- .++|-+.++.+.|..|..+...++++++.-+ ++.+...+. +. ...|++
T Consensus 7 ~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~----ki~~~~~~~----~~----------~~~p~~ 65 (515)
T TIGR03140 7 LAQLKSYLASL---ENPVTLVLSAGSHEKSKELLELLDEIASLSD----KISLTQNTA----DT----------LRKPSF 65 (515)
T ss_pred HHHHHHHHHhc---CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC----CeEEEEecC----Cc----------CCCCeE
Confidence 46677777653 4566555555579999999999999888644 477654433 11 346999
Q ss_pred EEEECCEE--EEEeCCCCHHHHHHHHHHh
Q 027890 183 HFYKNGAL--VEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~~G~~--v~~~~~~~~~~l~~~l~~~ 209 (217)
.++++|+. +.++|--.=.++..+|+..
T Consensus 66 ~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i 94 (515)
T TIGR03140 66 TILRDGADTGIRFAGIPGGHEFTSLVLAI 94 (515)
T ss_pred EEecCCcccceEEEecCCcHHHHHHHHHH
Confidence 99877653 4444322233444444433
No 245
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.33 E-value=9.2 Score=34.94 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++.++++.- .++|-+.++.+.|..|..+...++++++.-+ ++.+...+. + ...|++
T Consensus 7 ~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~----~i~~~~~~~----~-----------~~~p~~ 64 (517)
T PRK15317 7 KTQLKQYLELL---ERPIELVASLDDSEKSAELKELLEEIASLSD----KITVEEDSL----D-----------VRKPSF 64 (517)
T ss_pred HHHHHHHHHhC---CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC----ceEEEEccC----C-----------CCCCEE
Confidence 46677777653 5666666666689999999999999988644 466643222 1 347999
Q ss_pred EEEECCEE--EEEeCCCCHHHHHHHHHHh
Q 027890 183 HFYKNGAL--VEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~~~G~~--v~~~~~~~~~~l~~~l~~~ 209 (217)
.+.++|+. +.++|--.=.++..||+..
T Consensus 65 ~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i 93 (517)
T PRK15317 65 SITRPGEDTGVRFAGIPMGHEFTSLVLAL 93 (517)
T ss_pred EEEcCCccceEEEEecCccHHHHHHHHHH
Confidence 99876643 3333322333444444443
No 246
>PRK12559 transcriptional regulator Spx; Provisional
Probab=87.14 E-value=0.56 Score=34.86 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.8
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.++|+.|+.....|++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999988766654
No 247
>PRK09301 circadian clock protein KaiB; Provisional
Probab=86.54 E-value=3 Score=29.65 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=59.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEe-C
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAF-P 195 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~-~ 195 (217)
...++=.|.|..-+..+.....+.++.+.+-.. .+.+--||+ .++++++..++|-.+||++-.- -.++.++ |
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g--~y~LeVIDv----~~qPelAE~~~IvATPTLIK~~-P~P~rriiG 77 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKG--VYALKVIDV----LKNPQLAEEDKILATPTLAKIL-PPPVRKIIG 77 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEc----ccCHhHHhHCCeEEecHHhhcC-CCCcceeec
Confidence 456777777888888988888899988865431 477778899 8999999999999999966432 3445555 3
Q ss_pred C-CCHHHHHHH
Q 027890 196 T-RDKERIDAA 205 (217)
Q Consensus 196 ~-~~~~~l~~~ 205 (217)
. .+.+.+..-
T Consensus 78 Dlsd~~kVL~~ 88 (103)
T PRK09301 78 DLSDREKVLIG 88 (103)
T ss_pred ccccHHHHHHh
Confidence 3 344444433
No 248
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=86.16 E-value=3.4 Score=28.48 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=52.6
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEe
Q 027890 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~ 194 (217)
..++=.|.|..-+.++.....+.++.+.+-.. .+.+--||+ .+++++++.++|-.+||++-.- -.++.++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g--~y~LeVIDv----~~qP~lAE~~~IvATPtLIK~~-P~P~rri 72 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQG--VYALKVIDV----LKNPQLAEEDKILATPTLSKIL-PPPVRKI 72 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEc----ccCHhHHhHCCEEEecHHhhcC-CCCccee
Confidence 45566677888888888888888888765431 477777899 8999999999999999966432 3344444
No 249
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.14 E-value=2.3 Score=34.61 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCCC
Q 027890 168 SEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 168 ~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~~~~ 214 (217)
...+++.||+++|+|+| .+| ..-.|...++.+...|.+.+....
T Consensus 174 ~~~A~e~gI~gVP~fv~-d~~--~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF-DGK--YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccCceEEE-cCc--EeecCCCCHHHHHHHHHHHHhccc
Confidence 34678999999999998 333 222267899999999999886544
No 250
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=84.36 E-value=4.5 Score=33.50 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.4
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCC
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
.+|+.+++..+.||+.|....=.|-..-.+|..
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 489999999999999998766445555555664
No 251
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=83.91 E-value=3.3 Score=25.51 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
.|+.++|+.|....-.+....- .+....++..+ +...++.+...-..+|++.. +|..+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i-------~~~~~~~~~~~--~~~~~~~~~~~~~~~P~l~~--~~~~~~ 61 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL-------PYELVPVDLGE--GEQEEFLALNPLGKVPVLED--GGLVLT 61 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-------CcEEEEeCCCC--CCCHHHHhcCCCCCCCEEEE--CCEEEE
Confidence 5778999999988776665522 24455555421 11124566667788997653 465543
No 252
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=83.32 E-value=11 Score=30.20 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=36.7
Q ss_pred CCeEEEEEECCCCh-hhHHhHHHHHHHHHHhC-CCCCCE--EEEEEEccCCcchhHHHHHHcCC
Q 027890 117 GSLVVVDFYRTSCG-SCKYIEQGFSKLCKGSG-DQEAPV--IFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~v--~~~~vd~~d~~~~~~~l~~~~~I 176 (217)
+++++|.|.=+.|+ -|-.+...+..+.++.. ....++ .++.||- + ...+++.++|..
T Consensus 67 Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP--e-rDtp~~lk~Y~~ 127 (207)
T COG1999 67 GKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP--E-RDTPEVLKKYAE 127 (207)
T ss_pred CCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC--C-CCCHHHHHHHhc
Confidence 89999999978884 68888888888877776 323344 5555553 2 122444455544
No 253
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=83.18 E-value=9.8 Score=24.74 Aligned_cols=62 Identities=8% Similarity=-0.062 Sum_probs=37.6
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
..|+.+.|+.|+...-.+.+..- .+.+..+|........+++.+--.-..+|++. .+|..+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl-------~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l~ 63 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL-------RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNIIC 63 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC-------CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEEE
Confidence 45778889999877644444322 25556666532112344566666667899985 5776554
No 254
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=80.97 E-value=1.6 Score=31.02 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=40.5
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHHHHHHcCCCCCcEEEEEE-CCEEEEEeC--
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSEVAERLKIKTVPLFHFYK-NGALVEAFP-- 195 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~---~~~~~~l~~~~~I~~~Pt~~~~~-~G~~v~~~~-- 195 (217)
..|+.+||+.|+.....|++- ++.|-.+|+..+ .++-..+..++|+ --++. .|......+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~---------~i~~~~~di~~~p~s~~eL~~~l~~~g~-----~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR---------GVAYTFHDYRKDGLDAATLERWLAKVGW-----ETLLNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCCeEEEecccCCCCHHHHHHHHHHhCh-----HHHHccCchHHHhCChh
Confidence 568999999999988777664 244444554322 1233455556553 22332 444333322
Q ss_pred ---CCCHHHHHHHHHHh
Q 027890 196 ---TRDKERIDAAILKY 209 (217)
Q Consensus 196 ---~~~~~~l~~~l~~~ 209 (217)
..+.+++.+.|.++
T Consensus 68 ~~~~~s~~e~~~~l~~~ 84 (105)
T cd03035 68 QKAALDAAKAIALMLEH 84 (105)
T ss_pred hhccCCHHHHHHHHHhC
Confidence 23456666666554
No 255
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=80.97 E-value=5 Score=30.13 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=49.5
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC-c-EEEEEECCEEEEEeC
Q 027890 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV-P-LFHFYKNGALVEAFP 195 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~-P-t~~~~~~G~~v~~~~ 195 (217)
..-++.|++|.|+=|......++. . .+.+-.+.. +.-..+.++++|..- = .--..-+|..++ |
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~----Gf~Vk~~~~----~d~~alK~~~gIp~e~~SCHT~VI~Gy~vE--G 89 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----N----GFEVKVVET----DDFLALKRRLGIPYEMQSCHTAVINGYYVE--G 89 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----C----CcEEEEeec----CcHHHHHHhcCCChhhccccEEEEcCEEEe--c
Confidence 456778999999999988777662 1 255555555 666778888888421 0 111224666554 4
Q ss_pred CCCHHHHHHHHHHh
Q 027890 196 TRDKERIDAAILKY 209 (217)
Q Consensus 196 ~~~~~~l~~~l~~~ 209 (217)
....+.|..+|++-
T Consensus 90 HVPa~aI~~ll~~~ 103 (149)
T COG3019 90 HVPAEAIARLLAEK 103 (149)
T ss_pred cCCHHHHHHHHhCC
Confidence 46777887777654
No 256
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=79.62 E-value=1.8 Score=32.12 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=17.0
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.++|+.|+.....|++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH 23 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 4467889999999987666553
No 257
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=4.5 Score=32.24 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHcCCCCCcEEEEEECCEEEEEe-C--CCCHHHHHHHHHHhc
Q 027890 168 SEVAERLKIKTVPLFHFYKNGALVEAF-P--TRDKERIDAAILKYT 210 (217)
Q Consensus 168 ~~l~~~~~I~~~Pt~~~~~~G~~v~~~-~--~~~~~~l~~~l~~~~ 210 (217)
..+++++++.++||+++-+||+..--- + ..+++.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 567899999999999999998765444 3 256788888887765
No 258
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.62 E-value=4.5 Score=31.58 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=28.4
Q ss_pred chhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027890 165 DEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 165 ~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l 206 (217)
..+...+.++||.++||+++ +|+.+ -.|..+.+.|.+.|
T Consensus 162 ~~~~~~a~~~gv~G~Pt~vv--~g~~~-~~G~~~~~~~~~~i 200 (201)
T cd03024 162 RADEARARQLGISGVPFFVF--NGKYA-VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHHCCCCcCCEEEE--CCeEe-ecCCCCHHHHHHHh
Confidence 45566788999999999887 65532 23667888887765
No 259
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.05 E-value=15 Score=23.24 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~ 192 (217)
.|+.++|+.|....-.+....- .+....+|.........++.+......+|++.. +|..+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~ 63 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI-------PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLA 63 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-------CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEE
Confidence 5778999999987766555422 244555554211123345555555667999863 565543
No 260
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=77.91 E-value=2.9 Score=28.18 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCcEEEEEE-CCEEEEEe--CCCCHHHHHHHHHHhc
Q 027890 178 TVPLFHFYK-NGALVEAF--PTRDKERIDAAILKYT 210 (217)
Q Consensus 178 ~~Pt~~~~~-~G~~v~~~--~~~~~~~l~~~l~~~~ 210 (217)
.-|++++++ +|+.+.++ ...+.++|.++|.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 459999997 89988887 6899999999998753
No 261
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=74.01 E-value=7.1 Score=30.13 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=24.7
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027890 166 EQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l 206 (217)
.+...+.++||.++||+++ +|+.+ .|....+.|...|
T Consensus 155 ~~~~~a~~~gi~gvPtfvv--~g~~~--~G~~~l~~~~~~l 191 (192)
T cd03022 155 ANTEEAIARGVFGVPTFVV--DGEMF--WGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHcCCCcCCeEEE--CCeee--cccccHHHHHHHh
Confidence 4456678999999999987 67633 2444555555443
No 262
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=72.28 E-value=1.4 Score=29.95 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=42.8
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEE
Q 027890 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFH 183 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~ 183 (217)
|-+..-+........+..+.+.+.+ ..+.+--||+ .++++++..++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv----~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDV----LEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEET----TTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEc----ccCHhHHhHCCeeecceEe
Confidence 4455556667777888888887543 2688888999 9999999999999999975
No 263
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=69.18 E-value=14 Score=24.91 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=35.6
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
+..|+.+.|++|+...-.+....- .+.+..+|.. ....++.+......+|.+.. .+|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl-------~~~~~~v~~~---~~~~~~~~~np~~~vPvL~~-~~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI-------PHEVININLK---DKPDWFLEKNPQGKVPALEI-DEGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC-------CCeEEEeCCC---CCcHHHHhhCCCCCcCEEEE-CCCCEE
Confidence 344678889999987655555422 2455556651 12244555556678999863 235544
No 264
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=67.98 E-value=68 Score=26.46 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=38.5
Q ss_pred HHHHHhhhcCCCeEEEEEECCCChh--hHHhHHHHHHHHHHhCCCCC-CEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027890 107 FKILEKSKETGSLVVVDFYRTSCGS--CKYIEQGFSKLCKGSGDQEA-PVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 107 ~~~l~~a~~~~k~vlV~F~a~wC~~--C~~~~p~l~~l~~~~~~~~~-~v~~~~vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
.++++.- +++|-|.+|.+---+ =....+.+.++.++|....+ ++.+-.+|...+.+...+.+.++||...
T Consensus 17 ~~~L~~L---~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~ 89 (271)
T PF09822_consen 17 KKVLKSL---DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPV 89 (271)
T ss_pred HHHHHhC---CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCcc
Confidence 3445543 567777777654211 23444445555555544344 7899889872222333444556998773
No 265
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=67.44 E-value=16 Score=31.29 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=63.6
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027890 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~ 174 (217)
+.|.+| |-+|-+++.++ +.|.+|.|+.+......+.. -..+++++.+....+.++..|+ ..-..-..-+
T Consensus 210 pLVREi-TFeN~EELtEE----GlPflILf~~kdD~~s~k~F--~~aI~ReL~~e~~~in~l~ADG----~~f~hpL~Hl 278 (375)
T KOG0912|consen 210 PLVREI-TFENAEELTEE----GLPFLILFRKKDDKESEKIF--KNAIARELDDETLAINFLTADG----KVFKHPLRHL 278 (375)
T ss_pred hhhhhh-hhccHHHHhhc----CCceEEEEecCCcccHHHHH--HHHHHHHhhhhhhccceeecCc----ceecchHHHh
Confidence 467777 77888888887 99999999998887665433 2455566555444588988887 5444444444
Q ss_pred CC--CCCcEEEE--------EECCEEEEEeCCCCHHHHHHHHHHhc
Q 027890 175 KI--KTVPLFHF--------YKNGALVEAFPTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I--~~~Pt~~~--------~~~G~~v~~~~~~~~~~l~~~l~~~~ 210 (217)
|- ..+|.+.+ |.+++.+ ..+..|.+|+..+-
T Consensus 279 gKs~~DLPviaIDsF~Hmylfp~f~di-----~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 279 GKSPDDLPVIAIDSFRHMYLFPDFNDI-----NIPGKLKQFVADLH 319 (375)
T ss_pred CCCcccCcEEEeeccceeeecCchhhh-----cCccHHHHHHHHHh
Confidence 32 34555443 3333322 34557888887664
No 266
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.40 E-value=35 Score=24.17 Aligned_cols=74 Identities=24% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhcCCCeEEEEEE---CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC-CCCC
Q 027890 104 AEFFKILEKSKETGSLVVVDFY---RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK-IKTV 179 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~---a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~-I~~~ 179 (217)
+-+++.+++ ++.++..=. .|-|+........|..... +.|..||+ -.++++.+.+. ...+
T Consensus 6 ~~I~~~i~~----n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~--------v~~~~vnV----L~d~eiR~~lk~~s~W 69 (105)
T COG0278 6 DRIQKQIKE----NPVVLFMKGTPEFPQCGFSAQAVQILSACGV--------VDFAYVDV----LQDPEIRQGLKEYSNW 69 (105)
T ss_pred HHHHHHhhc----CceEEEecCCCCCCCCCccHHHHHHHHHcCC--------cceeEEee----ccCHHHHhccHhhcCC
Confidence 445555554 444433333 5667777776665554421 56777888 56667655443 3467
Q ss_pred cEE-EEEECCEEEEE
Q 027890 180 PLF-HFYKNGALVEA 193 (217)
Q Consensus 180 Pt~-~~~~~G~~v~~ 193 (217)
||| .+|-+|+.+.-
T Consensus 70 PT~PQLyi~GEfvGG 84 (105)
T COG0278 70 PTFPQLYVNGEFVGG 84 (105)
T ss_pred CCCceeeECCEEecc
Confidence 776 36679987754
No 267
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=66.05 E-value=19 Score=29.55 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=36.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCC-CCCEEEEEEEcc
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-EAPVIFLKHNVI 161 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~v~~~~vd~~ 161 (217)
+..+||-+-..+|..|..-...|+.|..++... ..+|.|+.||--
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 788999999999999999888888887766432 347999999863
No 268
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=66.00 E-value=3.2 Score=38.06 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HHH--HHHHhCCCCCCEEEEEEEccCCcchhHHH--------
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FSK--LCKGSGDQEAPVIFLKHNVIDEYDEQSEV-------- 170 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~~--l~~~~~~~~~~v~~~~vd~~d~~~~~~~l-------- 170 (217)
..+.|+++-.+ +|++++-..=+.|..|..|... |+. .++.+.+ +++-++||- ++.+++
T Consensus 101 gqeaf~kar~e----nkpifLsvgystchwchvmekesfeneet~~ilne---nfv~ikVDR----EERPDVDK~YM~Fv 169 (786)
T KOG2244|consen 101 GQEAFNKARAE----NKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE---NFVKIKVDR----EERPDVDKLYMAFV 169 (786)
T ss_pred hHHHHHHHHhc----CCCEEEEcccccchheeeeecccccCHHHHHHHhh---hhhhhccCh----hhcCchHHHHHHHH
Confidence 45566666555 9999999999999999988754 433 5555544 355566665 444433
Q ss_pred HHHcCCCCCcEEEEEE
Q 027890 171 AERLKIKTVPLFHFYK 186 (217)
Q Consensus 171 ~~~~~I~~~Pt~~~~~ 186 (217)
....|-.++|.-+|+.
T Consensus 170 ~assg~GGWPmsV~LT 185 (786)
T KOG2244|consen 170 VASSGGGGWPMSVFLT 185 (786)
T ss_pred HhccCCCCCceeEEeC
Confidence 2345778899888873
No 269
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=65.31 E-value=49 Score=23.85 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=70.7
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHH----HHcCCC
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA----ERLKIK 177 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~----~~~~I~ 177 (217)
+.+++-+.-... -+...++-|--+-.+.-..+.+.+.++|+++.. .+++.|+.||- +..+-+. +-|+|.
T Consensus 7 ~~~~m~e~wedd--~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDP----D~FPllv~yWektF~ID 79 (120)
T cd03074 7 KPENMFETWEDD--LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDP----DDFPLLVPYWEKTFGID 79 (120)
T ss_pred cHHHHHHhhhcc--cCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECC----ccCchhhHHHHhhcCcc
Confidence 444544444432 257888889999999999999999999999875 67899999998 7666554 344553
Q ss_pred -CCcEEEEEE--CCEEEEEe--C---CCCHHHHHHHHHHh
Q 027890 178 -TVPLFHFYK--NGALVEAF--P---TRDKERIDAAILKY 209 (217)
Q Consensus 178 -~~Pt~~~~~--~G~~v~~~--~---~~~~~~l~~~l~~~ 209 (217)
.-|.+=++. +..-+..- . ..+.++|..||+..
T Consensus 80 l~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 80 LFRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cCCCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 248877774 33323222 2 26789999999864
No 270
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=64.08 E-value=14 Score=28.49 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=31.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (217)
|.+|+..-||+|-...+.+.++.+.+.+. .+.+.-+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l 39 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPL 39 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEecccc
Confidence 67899999999999999999999999432 566666654
No 271
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=63.66 E-value=27 Score=24.99 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=35.5
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~ 161 (217)
.++.+||.=.|+-|+.-. -...|++|.++|... ++.++..=|.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcn 62 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCN 62 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBS
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehH
Confidence 489999999999999999 667899999999743 5888877663
No 272
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=62.51 E-value=69 Score=25.63 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=49.8
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEE--EEEccCC------------cchhHHHHHHcCCCCCcEEEEEECC
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL--KHNVIDE------------YDEQSEVAERLKIKTVPLFHFYKNG 188 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~--~vd~~d~------------~~~~~~l~~~~~I~~~Pt~~~~~~G 188 (217)
.|.+..|..|-.....|.+++.+- + |..+ .||..|. .+.....+++++..++=|=.++-||
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~~-~----Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG 78 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAARP-D----VIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNG 78 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHHT-S----SEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETT
T ss_pred EecCCCCCCCcHHHHHHHHhhcCC-C----EEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECC
Confidence 577889999999999999999983 3 4443 5565442 1233455667776665444455677
Q ss_pred EEEEEeCCCCHHHHHHHHHHhccC
Q 027890 189 ALVEAFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 189 ~~v~~~~~~~~~~l~~~l~~~~~~ 212 (217)
..- ..|.+...+...|.+....
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHHHT
T ss_pred eee--eeccCHHHHHHHHHHhhcc
Confidence 543 3678889999999888654
No 273
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=62.10 E-value=39 Score=21.55 Aligned_cols=73 Identities=5% Similarity=0.019 Sum_probs=41.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~ 200 (217)
+-.|+.+.|+.|+...-.+....- .+.+..++.........++.+......+|.+. .+|..+. ...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-------~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l~-----es~ 67 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-------DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKLF-----ESR 67 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-------CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEEE-----cHH
Confidence 334556779999887765555422 24455555421112234566666677899874 4665443 444
Q ss_pred HHHHHHH
Q 027890 201 RIDAAIL 207 (217)
Q Consensus 201 ~l~~~l~ 207 (217)
.|.++|.
T Consensus 68 aI~~yL~ 74 (76)
T cd03053 68 AITRYLA 74 (76)
T ss_pred HHHHHHh
Confidence 5666654
No 274
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=34 Score=26.52 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~ 160 (217)
.++.+||.=-|+.|+.-..-...|..|.++|... ++.++..=|
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPC 75 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPC 75 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEecc
Confidence 4788888888999988886666788888887643 455554443
No 275
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.19 E-value=13 Score=28.62 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.3
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhC
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~ 147 (217)
|.+|+-+.|++|-...+.+.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999883
No 276
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=59.94 E-value=63 Score=23.30 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=51.2
Q ss_pred EEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC--------cchhHHHHHHcCCCCCc-EEEEE-ECC
Q 027890 120 VVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE--------YDEQSEVAERLKIKTVP-LFHFY-KNG 188 (217)
Q Consensus 120 vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~--------~~~~~~l~~~~~I~~~P-t~~~~-~~G 188 (217)
+||.|. +..-+.=+.....|.+....+..+ ++.++.+--... ......+.++|++..-. +++++ ++|
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 334343 334455556666666644445443 566666622110 01224788999975433 33344 688
Q ss_pred EEEEEe-CCCCHHHHHHHHHHh
Q 027890 189 ALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 189 ~~v~~~-~~~~~~~l~~~l~~~ 209 (217)
.+..+. ...+.++|-..|+..
T Consensus 90 ~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 90 GVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred cEEEecCCCCCHHHHHHHHhCC
Confidence 877776 568999999988754
No 277
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=59.90 E-value=84 Score=24.75 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----------------------CcchhHHHHH
Q 027890 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----------------------EYDEQSEVAE 172 (217)
Q Consensus 116 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d----------------------~~~~~~~l~~ 172 (217)
.++.|++.|| ..+---|--..-.|...+.++...+-.|..+.+|-.- -.|.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 3789999998 3443344322233444455554433346666665100 0367889999
Q ss_pred HcCC----CCCcE--EEEE-ECCEEEEE----e-CCCCHHHHHHHHHH
Q 027890 173 RLKI----KTVPL--FHFY-KNGALVEA----F-PTRDKERIDAAILK 208 (217)
Q Consensus 173 ~~~I----~~~Pt--~~~~-~~G~~v~~----~-~~~~~~~l~~~l~~ 208 (217)
.||| .|++. ++++ .+|..... + .|++.++....++.
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 9998 45553 3333 35544331 2 57888887766654
No 278
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.61 E-value=12 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.8
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCE
Q 027890 166 EQSEVAERLKIKTVPLFHFYKNGA 189 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~~~G~ 189 (217)
.+...+.++||.++||+++.+++.
T Consensus 157 ~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 157 EDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHcCCCccCEEEEEeCCe
Confidence 445667899999999999998665
No 279
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.32 E-value=78 Score=28.02 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027890 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
++++-+.++.- .+..-+=-|++-.|..|-..-..|+-++--.+ ++.-..+|. .-.++=.+.-+|.++||+
T Consensus 104 ~q~vieqik~i--~g~~~FETy~SltC~nCPDVVQALN~msvlNp----~I~H~~IdG----a~Fq~Evear~IMaVPtv 173 (520)
T COG3634 104 DQDVIEQIKAI--DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP----RIKHTAIDG----ALFQDEVEARNIMAVPTV 173 (520)
T ss_pred hHHHHHHHHhc--CCceeEEEEEEeeccCChHHHHHHHHHHhcCC----CceeEEecc----hhhHhHHHhccceecceE
Confidence 34444444443 36677777888899999887777776655433 588888887 566666677799999995
Q ss_pred EEEECCEEEEEeCCCCHHHHHHHHH
Q 027890 183 HFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 183 ~~~~~G~~v~~~~~~~~~~l~~~l~ 207 (217)
+ .||+.... |.+..++|...|.
T Consensus 174 f--lnGe~fg~-GRmtleeilaki~ 195 (520)
T COG3634 174 F--LNGEEFGQ-GRMTLEEILAKID 195 (520)
T ss_pred E--Ecchhhcc-cceeHHHHHHHhc
Confidence 4 56754432 2345555555544
No 280
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=54.47 E-value=1.3e+02 Score=25.96 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=42.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH-cCCCCCcEEEEEECCEEEEEeC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER-LKIKTVPLFHFYKNGALVEAFP 195 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~-~~I~~~Pt~~~~~~G~~v~~~~ 195 (217)
+++.+|+|.+.-- |.+++..+.-.. .+.+.+.-- ...+++.. -.....|.+.+|++....-+..
T Consensus 153 hq~ffVf~Gtge~-------PL~d~fidAASe---~~~~a~FfS-----aseeVaPe~~~~kempaV~VFKDetf~i~de 217 (468)
T KOG4277|consen 153 HQPFFVFFGTGEG-------PLFDAFIDAASE---KFSVARFFS-----ASEEVAPEENDAKEMPAVAVFKDETFEIEDE 217 (468)
T ss_pred cCceEEEEeCCCC-------cHHHHHHHHhhh---heeeeeeec-----cccccCCcccchhhccceEEEccceeEEEec
Confidence 7899999986553 333333332222 233333221 11222222 2346789999999765443333
Q ss_pred CCCHHHHHHHHHHh
Q 027890 196 TRDKERIDAAILKY 209 (217)
Q Consensus 196 ~~~~~~l~~~l~~~ 209 (217)
.+.++|.+||.+-
T Consensus 218 -~dd~dLseWinRE 230 (468)
T KOG4277|consen 218 -GDDEDLSEWINRE 230 (468)
T ss_pred -CchhHHHHHHhHh
Confidence 3667888888764
No 281
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=54.39 E-value=46 Score=29.09 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=45.4
Q ss_pred ChhhH-HhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC-CcEEEEEECCEEEEEeCC-CCHHHHHHH
Q 027890 129 CGSCK-YIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT-VPLFHFYKNGALVEAFPT-RDKERIDAA 205 (217)
Q Consensus 129 C~~C~-~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~-~Pt~~~~~~G~~v~~~~~-~~~~~l~~~ 205 (217)
|+.|. .......++.+.+.+....+.+.-.-|.-+ .-...-...+||.+ -+..++|++|+.+.++.. .-.++|.+.
T Consensus 274 CgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VN-gpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~ 352 (360)
T PRK00366 274 CGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVN-GPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAE 352 (360)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCC-CCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHHH
Confidence 44443 334445566666666544577766666211 11122344567764 456888899999998843 334455555
Q ss_pred HHHh
Q 027890 206 ILKY 209 (217)
Q Consensus 206 l~~~ 209 (217)
|+++
T Consensus 353 i~~~ 356 (360)
T PRK00366 353 IEAY 356 (360)
T ss_pred HHHH
Confidence 5544
No 282
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=51.64 E-value=39 Score=23.81 Aligned_cols=70 Identities=10% Similarity=0.166 Sum_probs=34.3
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC-------CCCcEE-EEEECCEEEEE
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI-------KTVPLF-HFYKNGALVEA 193 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I-------~~~Pt~-~~~~~G~~v~~ 193 (217)
|.+|.+.+.....+...=+++..-+... +|.|-.||+..+ +......++.-- .+.|.. .+|.+++.++-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~~-e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAMD-EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcCC-HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 4444455555666665555554443321 699999999553 344444443221 233332 46788887775
Q ss_pred e
Q 027890 194 F 194 (217)
Q Consensus 194 ~ 194 (217)
+
T Consensus 80 y 80 (99)
T PF04908_consen 80 Y 80 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 283
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=51.27 E-value=29 Score=24.43 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=36.9
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC--CCcEEEE-EECCE
Q 027890 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK--TVPLFHF-YKNGA 189 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~--~~Pt~~~-~~~G~ 189 (217)
||-.+|+-|......+..... ...+.|+-+.- +...++...+++. ..-+.++ .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-----~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-----GGRLRFVDIQS----EPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-----CCCEEEEECCC----hhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788999999999888877622 12477765532 3445556667764 3444444 46776
No 284
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=49.88 E-value=14 Score=26.55 Aligned_cols=76 Identities=8% Similarity=0.079 Sum_probs=40.7
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc---chhHHHHHHcCCCCCcE-EEEE-ECCEEEEEeC-
Q 027890 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSEVAERLKIKTVPL-FHFY-KNGALVEAFP- 195 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~---~~~~~l~~~~~I~~~Pt-~~~~-~~G~~v~~~~- 195 (217)
..|+.+.|..|++....|++. ++.+..+|+..+. ++-..+.+..|+ +. --++ +.|......+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~---------~i~~~~~di~~~p~t~~el~~~l~~~g~---~~~~~lin~~~~~~~~l~~ 69 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK---------GIEPEVVKYLKNPPTKSELEAIFAKLGL---TVAREMIRTKEALYKELGL 69 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC---------CCCeEEEeccCCCcCHHHHHHHHHHcCC---chHHHHHhcCCcHHHHcCC
Confidence 468899999999988777763 1444445553321 333455555553 22 1133 3443333221
Q ss_pred ---CCCHHHHHHHHHHh
Q 027890 196 ---TRDKERIDAAILKY 209 (217)
Q Consensus 196 ---~~~~~~l~~~l~~~ 209 (217)
..+.+++.+.|.++
T Consensus 70 ~~~~ls~~e~i~~l~~~ 86 (114)
T TIGR00014 70 SDPNLSDQELLDAMVAH 86 (114)
T ss_pred CccCCCHHHHHHHHHHC
Confidence 34556666666553
No 285
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=49.21 E-value=85 Score=21.61 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHH
Q 027890 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAA 205 (217)
Q Consensus 126 a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~ 205 (217)
..+|+.|++..=.+... +. .+.+..+|.. +....+.+..-...+|++. .+|..+ .+-..|.++
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi--~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eY 81 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GV--VFNVTTVDMK---RKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEF 81 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CC--ceEEEEeCCC---CCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHH
Confidence 35799998866444433 11 3555666651 2234455545557799654 566555 367788899
Q ss_pred HHHhccC
Q 027890 206 ILKYTST 212 (217)
Q Consensus 206 l~~~~~~ 212 (217)
|++...+
T Consensus 82 Lde~~~~ 88 (91)
T cd03061 82 LEETLCP 88 (91)
T ss_pred HHHHccC
Confidence 8887544
No 286
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=49.12 E-value=69 Score=26.42 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=60.4
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEE--EEEEEccCC------------cchhHHHHHHcCCCCCcEEE
Q 027890 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVI--FLKHNVIDE------------YDEQSEVAERLKIKTVPLFH 183 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~--~~~vd~~d~------------~~~~~~l~~~~~I~~~Pt~~ 183 (217)
..||=.|.+..|..|-.....|.+++++= ++. -+.||..|. .+......+.|+-.+++|=.
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~-----~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQ 116 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP-----GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQ 116 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC-----CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCch
Confidence 44555677889999999888888887752 233 345665442 23445678888999998888
Q ss_pred EEECCEEEEEeCCCCHHHHHHHHHHhc
Q 027890 184 FYKNGALVEAFPTRDKERIDAAILKYT 210 (217)
Q Consensus 184 ~~~~G~~v~~~~~~~~~~l~~~l~~~~ 210 (217)
.+-||.... .|.+..+|...|....
T Consensus 117 avvnGr~~~--~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 117 AVVNGRVHA--NGADPGAIEDAIAAMA 141 (261)
T ss_pred heeechhhh--cCCCHHHHHHHHHHhh
Confidence 887875432 5788888888887654
No 287
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=48.40 E-value=24 Score=25.33 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=17.4
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.+.|..|+.....|++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3568899999999887766654
No 288
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=46.22 E-value=46 Score=26.77 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=19.2
Q ss_pred hhHHHHHHcCCCCCcEEEEEEC
Q 027890 166 EQSEVAERLKIKTVPLFHFYKN 187 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~~~ 187 (217)
-++.+.++|+|+.+|+|++...
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCS 171 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcC
Confidence 3688999999999999999753
No 289
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=46.08 E-value=1.5e+02 Score=23.60 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=40.0
Q ss_pred CEEEEEEEccCCcchhHHHHHHcCCCC---------------CcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027890 152 PVIFLKHNVIDEYDEQSEVAERLKIKT---------------VPLFHFYK-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 152 ~v~~~~vd~~d~~~~~~~l~~~~~I~~---------------~Pt~~~~~-~G~~v~~~-~~~~~~~l~~~l~~~~~ 211 (217)
++..+.-+. +...++++.|+|.. -..++++. +|+....+ .+.++++|.+.|++.+.
T Consensus 133 ~~~~ltg~~----~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 133 RWIGLTGTP----EQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CeeeeeCCH----HHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 466665555 77788888888763 22344555 89999888 55678999999988764
No 290
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.61 E-value=83 Score=27.35 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=51.3
Q ss_pred CeEEEEEECCCChhhHHh----HHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC--CcEEEEEECCEEE
Q 027890 118 SLVVVDFYRTSCGSCKYI----EQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT--VPLFHFYKNGALV 191 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~----~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~--~Pt~~~~~~G~~v 191 (217)
+..-+.|-| ||.|-.. ...+.++.+.+......+.+.-+-|--+ ..-...-..+||.+ -|...+|++|+.+
T Consensus 255 R~~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVN-GPGEak~AdiGia~~~~~~~~~f~~g~~~ 331 (361)
T COG0821 255 RSRGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVN-GPGEAKHADIGIAGGGKGSGPVFVKGEII 331 (361)
T ss_pred cccCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEec-CCcchhccceeeecCCCCeeEEEECCeEE
Confidence 344455555 8888543 3334445555544333455554444211 11111223456543 6899999999999
Q ss_pred EEeC-CCCHHHHHHHHHHhc
Q 027890 192 EAFP-TRDKERIDAAILKYT 210 (217)
Q Consensus 192 ~~~~-~~~~~~l~~~l~~~~ 210 (217)
.++. ..-.++|+..++++.
T Consensus 332 ~~~~~~~~~eel~~~i~~~~ 351 (361)
T COG0821 332 KKLPEEDIVEELEALIEAYA 351 (361)
T ss_pred EecChhhHHHHHHHHHHHHH
Confidence 9983 455677777777664
No 291
>PRK10026 arsenate reductase; Provisional
Probab=44.76 E-value=23 Score=26.71 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=18.0
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.+.|..|+.....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4568899999999988777765
No 292
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=42.22 E-value=1.7e+02 Score=22.94 Aligned_cols=77 Identities=8% Similarity=-0.050 Sum_probs=44.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027890 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~ 196 (217)
+...+-.|+.++|+.|....=.++...- .+.+..||.. +..+++.+..-...+|++. .+|..+.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl-------~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~--~~g~~l~---- 70 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV-------SVEIEQVEKD---NLPQDLIDLNPYQSVPTLV--DRELTLY---- 70 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC-------CCEEEeCCcc---cCCHHHHHhCCCCCCCEEE--ECCEEee----
Confidence 3444555667789999988755554321 3556666651 2334555544556799985 5676553
Q ss_pred CCHHHHHHHHHHhc
Q 027890 197 RDKERIDAAILKYT 210 (217)
Q Consensus 197 ~~~~~l~~~l~~~~ 210 (217)
.-..|..+|.+..
T Consensus 71 -ES~AIl~YL~~~~ 83 (211)
T PRK09481 71 -ESRIIMEYLDERF 83 (211)
T ss_pred -CHHHHHHHHHHhC
Confidence 2335555555543
No 293
>PRK10387 glutaredoxin 2; Provisional
Probab=42.15 E-value=1.6e+02 Score=22.76 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=37.7
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHH
Q 027890 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERID 203 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~ 203 (217)
++.+.|++|.+..=.++...- .+....++. .......+......+|+++. .+|..+. +-..|.
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi-------~y~~~~~~~----~~~~~~~~~~p~~~VPvL~~-~~g~~l~-----eS~aI~ 66 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNI-------PVELIVLAN----DDEATPIRMIGQKQVPILQK-DDGSYMP-----ESLDIV 66 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCC-------CeEEEEcCC----CchhhHHHhcCCcccceEEe-cCCeEec-----CHHHHH
Confidence 457789999987655544422 234444443 22221122333457898743 4665543 455666
Q ss_pred HHHHHhc
Q 027890 204 AAILKYT 210 (217)
Q Consensus 204 ~~l~~~~ 210 (217)
.+|.+..
T Consensus 67 ~yL~~~~ 73 (210)
T PRK10387 67 HYIDELD 73 (210)
T ss_pred HHHHHhC
Confidence 6666543
No 294
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=41.79 E-value=1.4e+02 Score=21.91 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=36.3
Q ss_pred CEEEEEEEccCC------cchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhcc
Q 027890 152 PVIFLKHNVIDE------YDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 152 ~v~~~~vd~~d~------~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~ 211 (217)
.+.+.+.|..++ +..-.++.++-|...+|-++ -||+++..-..-+.++|.+|+.-...
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEEESS---HHHHHHHHT--GG
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEEecCCCCHHHHHHHhCCCcc
Confidence 589999998543 12233556677899999755 58998888777899999999875543
No 295
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=41.12 E-value=92 Score=19.68 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=38.5
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC-CCCcEEEEEECCEEEEEeCCCCHHH
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI-KTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I-~~~Pt~~~~~~G~~v~~~~~~~~~~ 201 (217)
.++.+.|+.|.+..=.+....-. +....+|.. ....++.+..-. ..+|++. .+|..+. +-..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~-------~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~--~~~~~l~-----eS~a 65 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP-------YEYVEEDLG---NKSELLLASNPVHKKIPVLL--HNGKPIC-----ESLI 65 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC-------CEEEEeCcc---cCCHHHHHhCCCCCCCCEEE--ECCEEee-----hHHH
Confidence 45678899999877655554222 344445541 222333333332 5899875 4565442 4456
Q ss_pred HHHHHHH
Q 027890 202 IDAAILK 208 (217)
Q Consensus 202 l~~~l~~ 208 (217)
|.++|++
T Consensus 66 I~~yL~~ 72 (74)
T cd03058 66 IVEYIDE 72 (74)
T ss_pred HHHHHHh
Confidence 6666664
No 296
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=40.16 E-value=40 Score=24.34 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=44.7
Q ss_pred CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC--CCCCcEEEEEECCEE---EEEeCC----CC
Q 027890 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--IKTVPLFHFYKNGAL---VEAFPT----RD 198 (217)
Q Consensus 128 wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~--I~~~Pt~~~~~~G~~---v~~~~~----~~ 198 (217)
.|++|..+.-.|...-.- . ..+.+.+|+... --.++....| =++.|++++=.+... ....++ .+
T Consensus 23 ~Cp~c~~iEGlLa~~P~l-~---~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d 95 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDL-R---ERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDD 95 (112)
T ss_pred ECCchHHHHhHHhhChhh-h---hcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCC
Confidence 399999887766554332 2 258888888722 2223333333 268999887542211 122232 46
Q ss_pred HHHHHHHHHHhcc
Q 027890 199 KERIDAAILKYTS 211 (217)
Q Consensus 199 ~~~l~~~l~~~~~ 211 (217)
.+.|..+|.+.-+
T Consensus 96 ~~~I~~~La~r~g 108 (112)
T PF11287_consen 96 PRRILRYLAERHG 108 (112)
T ss_pred HHHHHHHHHHHcC
Confidence 7888888876543
No 297
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=40.10 E-value=56 Score=26.19 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 139 FSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 139 l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
+.++.+.+.. .+.| |....|.++|+|+.+|.++. .+|+.+
T Consensus 158 ~~~l~~~l~~---~vYf---------dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDS---RIYF---------DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCC---ceEE---------cCCchHhhccCceeeceEEE-ecCCEE
Confidence 5666777654 4555 66778999999999999886 455543
No 298
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=37.31 E-value=43 Score=24.26 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=19.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKLCK 144 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~ 144 (217)
+..|+.|.|..|+.....|++..-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi 26 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI 26 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC
Confidence 556889999999999887776543
No 299
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=36.85 E-value=2.4e+02 Score=23.17 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHhhh---------cCCCeEEEEEECCCChhh-----------------HHhHHHHHHHHHHhCCCCCCEE
Q 027890 101 KTDAEFFKILEKSK---------ETGSLVVVDFYRTSCGSC-----------------KYIEQGFSKLCKGSGDQEAPVI 154 (217)
Q Consensus 101 ~s~~~f~~~l~~a~---------~~~k~vlV~F~a~wC~~C-----------------~~~~p~l~~l~~~~~~~~~~v~ 154 (217)
.+.+++.+.+..+. -.++++.|..++|.|+.- ..+...++++...|-.....+.
T Consensus 87 ~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~II 166 (240)
T smart00053 87 TDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLI 166 (240)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeE
Confidence 34555555554432 135678899999988543 3344556676666644333577
Q ss_pred EEEEEccCCc--chhHHHHHHcCCCCCcEEEEEE
Q 027890 155 FLKHNVIDEY--DEQSEVAERLKIKTVPLFHFYK 186 (217)
Q Consensus 155 ~~~vd~~d~~--~~~~~l~~~~~I~~~Pt~~~~~ 186 (217)
++-+|+.... ....++++.+.-.+.|++.++.
T Consensus 167 L~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViT 200 (240)
T smart00053 167 LAVTPANVDLANSDALKLAKEVDPQGERTIGVIT 200 (240)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEE
Confidence 8888764321 1224788999888999998884
No 300
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=35.75 E-value=1.2e+02 Score=19.24 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=37.4
Q ss_pred CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027890 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 128 wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~ 207 (217)
+|+.|++..=.++...-.+ .+.++ .+..+.......+.+--.-..+|++.. .+|+.+. +-..|.++|+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-----~~~~v-~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~-----eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-----EIKVV-PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN-----ESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-----EEEEE-ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE-----SHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC-----EEEEE-eeecCccccChhhhccCcCeEEEEEEE-CCCCEee-----CHHHHHHHHh
Confidence 5888888765555553322 23343 222111122345666556678999776 4777554 5666777776
Q ss_pred H
Q 027890 208 K 208 (217)
Q Consensus 208 ~ 208 (217)
+
T Consensus 69 ~ 69 (70)
T PF13409_consen 69 E 69 (70)
T ss_dssp H
T ss_pred c
Confidence 4
No 301
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=35.68 E-value=1.1e+02 Score=19.86 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=36.3
Q ss_pred CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEEC-CEEEEEeCCCCHHHHHH
Q 027890 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKN-GALVEAFPTRDKERIDA 204 (217)
Q Consensus 126 a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~-G~~v~~~~~~~~~~l~~ 204 (217)
.+||+.|.+..-.+....-. +.+..++..+......++ +.-....+|++. .+ |..+. +...|.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~-------~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~--~~~~~~l~-----eS~aI~~ 77 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE-------YKTVPVEFPDIPPILGEL-TSGGFYTVPVIV--DGSGEVIG-----DSFAIAE 77 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC-------CeEEEecCCCcccccccc-cCCCCceeCeEE--ECCCCEEe-----CHHHHHH
Confidence 46899999877665554222 344455542110111122 112345789874 34 65543 5667777
Q ss_pred HHHHh
Q 027890 205 AILKY 209 (217)
Q Consensus 205 ~l~~~ 209 (217)
+|.+.
T Consensus 78 yL~~~ 82 (84)
T cd03038 78 YLEEA 82 (84)
T ss_pred HHHHh
Confidence 77654
No 302
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=35.31 E-value=1.9e+02 Score=21.66 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC-c-EEEEEECCEEEE
Q 027890 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV-P-LFHFYKNGALVE 192 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~-P-t~~~~~~G~~v~ 192 (217)
.+++-+|.+|-.-|+-|-.....+.+.- .+ ..+.|+.+.. +....+.+.+++..- + ++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~---~~i~f~~~q~----e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QG---GRIRFAALQS----EPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cC---CcEEEEeccC----chhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 3678888899999999998666555432 22 2588888876 777788888887543 3 455556776654
No 303
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=34.77 E-value=1.8e+02 Score=25.37 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=43.0
Q ss_pred ECCCChhhH-HhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC--CcEEEEEECCEEEEEeCCCCHHH
Q 027890 125 YRTSCGSCK-YIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT--VPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 125 ~a~wC~~C~-~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~--~Pt~~~~~~G~~v~~~~~~~~~~ 201 (217)
.=|.|+-|. .+.....++.+.+......+.++-+-|.-| ..-..--..+||-+ .-..++|++|+.+.++ ..++
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVN-GPGEak~ADiGIaggg~g~~~lF~~G~~~~kv---~~~~ 336 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVN-GPGEAKHADIGISGGGTGSAILFKRGKPKAKQ---PETD 336 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceec-CCchhhccCeeeecCCCCceEEEECCEEeEec---CHHH
Confidence 345555553 344455556555655444677776655221 11111122456653 3467889999998876 3445
Q ss_pred HHHHHHH
Q 027890 202 IDAAILK 208 (217)
Q Consensus 202 l~~~l~~ 208 (217)
+.+.|.+
T Consensus 337 ~~~~l~~ 343 (346)
T TIGR00612 337 MADELIR 343 (346)
T ss_pred HHHHHHH
Confidence 5554443
No 304
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.60 E-value=90 Score=20.14 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=24.3
Q ss_pred CcEEEEEECCEEEEEeCCCCHHHHHHHHHHhcc
Q 027890 179 VPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 ~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~~~~~ 211 (217)
=|++++|.+| .-+...+++...+++++++.
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHHHHHHHHHHh
Confidence 4999999998 33466789999999999875
No 305
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=60 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=40.0
Q ss_pred chhHHHHHHcCCCCCcEEEEEE--CCEEEEEe-CCCCHHHHHHHHHHhccCCC
Q 027890 165 DEQSEVAERLKIKTVPLFHFYK--NGALVEAF-PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 165 ~~~~~l~~~~~I~~~Pt~~~~~--~G~~v~~~-~~~~~~~l~~~l~~~~~~~~ 214 (217)
.+...+..-|.+..+|.+.+++ -|+.+.+. +-..++++..-+.+++..-.
T Consensus 141 seg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~ 193 (356)
T KOG1364|consen 141 SEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCP 193 (356)
T ss_pred CCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCC
Confidence 5667788899999999888885 89999888 44668888888888776543
No 306
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=33.72 E-value=2.3e+02 Score=22.17 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=34.3
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHH
Q 027890 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERID 203 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~ 203 (217)
++...|++|++..=.+....-. +.. +++.. +......+-.....+|++.. .+|..+. +...|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~-------~e~--~~~~~--~~~~~~~~~np~g~vP~l~~-~~g~~l~-----es~~I~ 65 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIP-------VEK--HVLLN--DDEETPIRMIGAKQVPILQK-DDGRAMP-----ESLDIV 65 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCC-------eEE--EECCC--CcchhHHHhcCCCCcceEEe-eCCeEec-----cHHHHH
Confidence 4567799998766544443222 223 33311 22222233333467897643 4665543 334455
Q ss_pred HHHHHh
Q 027890 204 AAILKY 209 (217)
Q Consensus 204 ~~l~~~ 209 (217)
++|.+.
T Consensus 66 ~yL~~~ 71 (209)
T TIGR02182 66 AYFDKL 71 (209)
T ss_pred HHHHHh
Confidence 555544
No 307
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=33.50 E-value=1.6e+02 Score=20.22 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=21.7
Q ss_pred CEEEEEEEccCCcchhHHHHHHcC----CCCCcEEEEEECCEEEE
Q 027890 152 PVIFLKHNVIDEYDEQSEVAERLK----IKTVPLFHFYKNGALVE 192 (217)
Q Consensus 152 ~v~~~~vd~~d~~~~~~~l~~~~~----I~~~Pt~~~~~~G~~v~ 192 (217)
+|.|-.+|+..+.+.-.++.++-+ -..+|.++ -+++.++
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF--i~~~~iG 72 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF--NGDEYCG 72 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE--ECCEEee
Confidence 588999999443233334444433 35567643 5666554
No 308
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.08 E-value=49 Score=23.50 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=16.8
Q ss_pred EEEECCCChhhHHhHHHHHHH
Q 027890 122 VDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l 142 (217)
..|+.+.|..|++....|++.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 468899999999987666654
No 309
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=30.53 E-value=1.5e+02 Score=18.82 Aligned_cols=72 Identities=8% Similarity=-0.027 Sum_probs=40.8
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHH
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERI 202 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l 202 (217)
.|+.+-++.|+...-.++...- .+....+|..+.....+++.+..-...+|++. .+|..+. ....|
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~-------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~-----eS~aI 68 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKI-------PFEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFTLA-----ESVAI 68 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCC-------CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEEEE-----cHHHH
Confidence 4677888999887655555432 24555566522111224555656667899885 4665443 33445
Q ss_pred HHHHHH
Q 027890 203 DAAILK 208 (217)
Q Consensus 203 ~~~l~~ 208 (217)
..+|.+
T Consensus 69 ~~Yl~~ 74 (76)
T cd03050 69 LRYLAR 74 (76)
T ss_pred HHHHHh
Confidence 555543
No 310
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=29.34 E-value=73 Score=25.70 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEE-ECCEEE
Q 027890 139 FSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFY-KNGALV 191 (217)
Q Consensus 139 l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~-~~G~~v 191 (217)
+.++.+.+.. .+.| |....|.++|+|+.+|.++.- .+|+.+
T Consensus 156 ~~~~~~~l~~---~vYf---------dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 156 IPEMSKALDS---RIYF---------DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred HHHHHHHhCC---ceEE---------cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 3555666654 4555 666779999999999998862 566554
No 311
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=28.84 E-value=1e+02 Score=25.99 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-CcchhHHHHHHcCCCCCc
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-EYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d-~~~~~~~l~~~~~I~~~P 180 (217)
+.+.|.++++..++....+...++.++|..-..=.....+|+++.. +.++--+-.. +...-.++|++++. |
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD-----~miVIGg~~SsNT~kL~eia~~~~~---~ 237 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVD-----AMIVIGGKNSSNTRKLAEIAKEHGK---P 237 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSS-----EEEEES-TT-HHHHHHHHHHHHCTT---C
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCC-----EEEEecCCCCccHHHHHHHHHHhCC---C
Confidence 5677777776655445555556999999988877777888887643 3333222100 00122356777764 6
Q ss_pred EEEE----------EECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 181 LFHF----------YKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 181 t~~~----------~~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
++++ |++.+.+.-. |..+++.+.+.+.+.+
T Consensus 238 t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 238 TYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp EEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred EEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 6665 2344455555 5567887777666554
No 312
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=28.23 E-value=1e+02 Score=24.14 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=23.7
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECC
Q 027890 99 EFKTDAEFFKILEKSKETGSLVVVDFYRT 127 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~ 127 (217)
.+.+.++++++++++.+.+.+.+|+++.+
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~~ 184 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLSP 184 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 46788899988888877788999998854
No 313
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=27.75 E-value=1.6e+02 Score=18.41 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHH
Q 027890 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAA 205 (217)
Q Consensus 126 a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~ 205 (217)
.+||+.|++..-.+....- .+.+..++. .. .-.-..+|++. .+|+.+. +...|.++
T Consensus 13 ~s~sp~~~~v~~~L~~~~i-------~~~~~~~~~----~~------~~p~g~vP~l~--~~g~~l~-----es~~I~~y 68 (72)
T cd03054 13 PSLSPECLKVETYLRMAGI-------PYEVVFSSN----PW------RSPTGKLPFLE--LNGEKIA-----DSEKIIEY 68 (72)
T ss_pred CCCCHHHHHHHHHHHhCCC-------ceEEEecCC----cc------cCCCcccCEEE--ECCEEEc-----CHHHHHHH
Confidence 4699999988766655211 233333332 11 11234689875 3565442 33666666
Q ss_pred HHH
Q 027890 206 ILK 208 (217)
Q Consensus 206 l~~ 208 (217)
|.+
T Consensus 69 L~~ 71 (72)
T cd03054 69 LKK 71 (72)
T ss_pred Hhh
Confidence 654
No 314
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.42 E-value=1.6e+02 Score=18.37 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=33.9
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v 191 (217)
.|+.+.|+.|.+..-.+....... .+..+.+|.. ...+++.+......+|.+.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-----~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-----DVELVLVNPW---SDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-----CcEEEEcCcc---cCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 467888999997765444421111 2555555541 23345555556678897653 355444
No 315
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=25.92 E-value=3.6e+02 Score=21.88 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=40.8
Q ss_pred CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027890 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 128 wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l~~~l~ 207 (217)
.|+.|+.+.-.|. .+.. .+.+-.||+. ...+.+.+-..-...|.+. | +|+.+ .+.+.|+++|+
T Consensus 20 dcpf~qr~~m~L~---~k~~----~f~vttVd~~---~kp~~f~~~sp~~~~P~l~-~-d~~~~-----tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV----PFKVTTVDLS---RKPEWFLDISPGGKPPVLK-F-DEKWV-----TDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHH---HcCC----CceEEEeecC---CCcHHHHhhCCCCCCCeEE-e-CCcee-----ccHHHHHHHHH
Confidence 4777776655554 3222 3677788882 3334444445555666544 3 33322 47889999999
Q ss_pred HhccCC
Q 027890 208 KYTSTT 213 (217)
Q Consensus 208 ~~~~~~ 213 (217)
+.+.+.
T Consensus 83 e~l~~p 88 (221)
T KOG1422|consen 83 EKLPPP 88 (221)
T ss_pred HhcCCC
Confidence 887654
No 316
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.42 E-value=1.4e+02 Score=23.51 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=23.2
Q ss_pred hHHHHHHcCCCCCcEEEEEE-CCEEEEEeCCCCHHHHHHHH
Q 027890 167 QSEVAERLKIKTVPLFHFYK-NGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 167 ~~~l~~~~~I~~~Pt~~~~~-~G~~v~~~~~~~~~~l~~~l 206 (217)
+..-+.+.||.++|+|++=. +|+.--.+|.-..+.++++|
T Consensus 168 ~~~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 168 NTDEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 34456778999999998854 34212223444444444443
No 317
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.77 E-value=3.8e+02 Score=21.93 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=37.3
Q ss_pred hhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEe
Q 027890 130 GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 130 ~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~ 194 (217)
.+|..+...+..+++++.. .+.++--|+ . ++..|. =.++-+++|+.+..-
T Consensus 169 kHsv~iMk~Lrrla~el~K---tiviVlHDI----N----fAS~Ys----D~IVAlK~G~vv~~G 218 (252)
T COG4604 169 KHSVQIMKILRRLADELGK---TIVVVLHDI----N----FASCYS----DHIVALKNGKVVKQG 218 (252)
T ss_pred HHHHHHHHHHHHHHHHhCC---eEEEEEecc----c----HHHhhh----hheeeecCCEEEecC
Confidence 7899999999999999876 477776676 2 233332 257788999998764
No 318
>PRK10853 putative reductase; Provisional
Probab=23.94 E-value=91 Score=22.50 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=17.7
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.+.|..|+.....|++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 4568899999999988777754
No 319
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=23.74 E-value=75 Score=25.22 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=18.3
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCCh
Q 027890 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG 130 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~ 130 (217)
+..+.|.++|.+.+.+ ++.++ ++||+
T Consensus 128 ~~~~~~~~e~~~~~~~----~~~v~----~~wcg 153 (202)
T cd00862 128 TRIVDTWEEFKEALNE----KGIVL----APWCG 153 (202)
T ss_pred eEeeCCHHHHHHHHhc----CCEEE----EEecC
Confidence 5667788888888865 44443 68886
No 320
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=22.50 E-value=3e+02 Score=21.21 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHhCCCCCCEEEEEEEccCC------cchhHHHHHHcCCCCCcEEEEE
Q 027890 134 YIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------YDEQSEVAERLKIKTVPLFHFY 185 (217)
Q Consensus 134 ~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~------~~~~~~l~~~~~I~~~Pt~~~~ 185 (217)
.+...|+...+... +.++.||..|. .++-.+|..+-...++|.+++=
T Consensus 77 rfrsmWerycR~v~-----aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 77 RFRSMWERYCRGVS-----AIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred cHHHHHHHHhhcCc-----EEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 44555666666553 67778887552 1233455666677889988873
No 321
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=22.45 E-value=1.6e+02 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.6
Q ss_pred eeecCCH--HHHHHHHHhhhcCCCeEEEEE
Q 027890 97 VREFKTD--AEFFKILEKSKETGSLVVVDF 124 (217)
Q Consensus 97 v~~i~s~--~~f~~~l~~a~~~~k~vlV~F 124 (217)
...+.+. ++++++++++...+++.||+.
T Consensus 124 ~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 124 GARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp EEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 3455666 999999999988899999874
No 322
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.83 E-value=3.8e+02 Score=22.89 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc-cCCcchhHHHHHHcCCCCCc
Q 027890 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV-IDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~-~d~~~~~~~l~~~~~I~~~P 180 (217)
+.+.|++++...+....-+.+.++.++|..-..=.....+|+++.. +.++--+- +.+...-.++|++++ .|
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD-----~miVVGg~~SsNT~kL~~i~~~~~---~~ 238 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQAD-----LVIVVGSKNSSNSNRLREVAEEAG---AP 238 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCC-----EEEEECCCCCccHHHHHHHHHHHC---CC
Confidence 5677777776654333334444589999888877777888888654 33322221 001122345677765 45
Q ss_pred EEEEE----------ECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027890 181 LFHFY----------KNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 181 t~~~~----------~~G~~v~~~-~~~~~~~l~~~l~~~~ 210 (217)
++++= ++-+.+.-. |..+++.|.+.+...+
T Consensus 239 t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 239 AYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred EEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 65542 333345544 4466776665555443
No 323
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.40 E-value=1.2e+02 Score=22.13 Aligned_cols=22 Identities=5% Similarity=0.235 Sum_probs=17.8
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027890 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+-+.|..|++....|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567889999999988777765
No 324
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=4.3e+02 Score=21.56 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=47.7
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHH
Q 027890 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERI 202 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~vd~~d~~~~~~~l~~~~~I~~~Pt~~~~~~G~~v~~~~~~~~~~l 202 (217)
.|.-..|..|..+...+++- +.-.++.|+ |. .....++-+-+|-++|.+ |.+|+.+.- +..++++|
T Consensus 15 I~~HktC~ssy~Lf~~L~nk-----gll~~Vkii--~a----~~p~f~~~~~~V~SvP~V--f~DGel~~~-dpVdp~~i 80 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENK-----GLLGKVKII--DA----ELPPFLAFEKGVISVPSV--FIDGELVYA-DPVDPEEI 80 (265)
T ss_pred EEEecchHHHHHHHHHHHhc-----CCCCCceEE--Ec----CCChHHHhhcceeecceE--EEcCeEEEc-CCCCHHHH
Confidence 45567898888877666541 112247775 44 555667777788899984 578876643 44677777
Q ss_pred HHHHHHh
Q 027890 203 DAAILKY 209 (217)
Q Consensus 203 ~~~l~~~ 209 (217)
+..+...
T Consensus 81 es~~~G~ 87 (265)
T COG5494 81 ESILSGQ 87 (265)
T ss_pred HHHHcCc
Confidence 7776653
No 325
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=20.00 E-value=1.7e+02 Score=23.79 Aligned_cols=29 Identities=7% Similarity=0.159 Sum_probs=24.4
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECC
Q 027890 99 EFKTDAEFFKILEKSKETGSLVVVDFYRT 127 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~ 127 (217)
.+.+.+++.++++++...+++.||++..+
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 46788999999988877788999999875
Done!