BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027891
         (217 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
           KR RGRPPG+  K +   +    S +A      HV+ V+ G DI   + +++++  R + 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 184 VLSANGAISTATLRQP 199
           VL  NG +S  TLRQP
Sbjct: 143 VLGGNGTVSNVTLRQP 158


>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
            GN=pds5a PE=2 SV=1
          Length = 1320

 Score = 37.0 bits (84), Expect = 0.092,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 29/114 (25%)

Query: 24   SGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGS------TIGSTLSVDPSSAISPHGVNVT 77
            S +G+  S +  P   P +N S    S +G         I   +SV    A  P G    
Sbjct: 1161 SETGSNASTNSQPS-SPATNKSRDVSSEVGARENEENPVITKAVSVKKEEAAQPSG---- 1215

Query: 78   ASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPP 131
                        RKR  P   G + SVS   +PS  + P    P  K  RGRPP
Sbjct: 1216 ------------RKRAAPASDGTENSVSS--NPSAGSQP----PLNKPRRGRPP 1251


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=orc4 PE=1 SV=1
          Length = 972

 Score = 35.8 bits (81), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 15/110 (13%)

Query: 34  GSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRG 93
           G P +HPL  P +Q   + G +     + +D  + I          A++ + +P KR RG
Sbjct: 152 GRPRLHPL--PVVQPSVDEGTTQNNLQMGLDEPNIIEGFA---EGHANLSELKP-KRGRG 205

Query: 94  RPRKYGPD--GSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSS 141
           RPRK  P+   S    LSP V      + P  KRGRGRPP    +Q++++
Sbjct: 206 RPRKIKPEEGSSSQNGLSPLV------VLPA-KRGRGRPPLHRSEQKIAN 248



 Score = 31.2 bits (69), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 20/68 (29%)

Query: 90  RKRGRPRKYGP----DGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGES 145
           R+RGRPRKY P    +GS                 P  KR RGRPP        + L + 
Sbjct: 101 RRRGRPRKYPPKPIDEGS----------------EPIIKRKRGRPPKIKSSSPSTKLDDP 144

Query: 146 LSGSAGMG 153
           L    G G
Sbjct: 145 LKPKRGRG 152


>sp|Q80X44|ZBT24_MOUSE Zinc finger and BTB domain-containing protein 24 OS=Mus musculus
           GN=Zbtb24 PE=1 SV=1
          Length = 710

 Score = 31.2 bits (69), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 64  DPSSAISPHGVNVTAS----ASMPQSEPVKRKRGRPRK 97
           D  SA  P  +N T +     S  +++P+KRKRGRPRK
Sbjct: 130 DNHSAPKPPALNCTGTPVVVISNKKNDPLKRKRGRPRK 167


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.129    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,606,314
Number of Sequences: 539616
Number of extensions: 3885055
Number of successful extensions: 10958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 10410
Number of HSP's gapped (non-prelim): 779
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)