Query 027892
Match_columns 217
No_of_seqs 179 out of 1065
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tr8_A Oligoribonuclease; tran 100.0 2E-45 6.7E-50 296.6 18.0 180 34-214 6-185 (186)
2 2igi_A Oligoribonuclease; RNAs 100.0 3.5E-41 1.2E-45 269.6 17.8 177 35-212 3-179 (180)
3 2gbz_A Oligoribonuclease; ORN, 100.0 6.7E-41 2.3E-45 271.6 16.5 177 35-212 7-183 (194)
4 2gui_A DNA polymerase III epsi 100.0 3.7E-32 1.3E-36 219.6 17.1 159 34-209 6-184 (194)
5 3mxm_B Three prime repair exon 100.0 1.6E-32 5.5E-37 229.6 12.0 169 34-211 9-216 (242)
6 2p1j_A POLIII, DNA polymerase 100.0 1.3E-31 4.3E-36 215.5 16.4 155 35-209 10-175 (186)
7 3u3y_B Three prime repair exon 100.0 4.9E-32 1.7E-36 233.6 11.4 168 35-211 10-216 (314)
8 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.3E-30 4.5E-35 211.7 15.0 165 35-210 8-195 (204)
9 2xri_A ERI1 exoribonuclease 3; 100.0 1.8E-30 6.1E-35 214.7 13.2 159 37-209 31-213 (224)
10 2f96_A Ribonuclease T; RNAse, 100.0 5.1E-30 1.7E-34 211.7 15.0 167 35-212 27-215 (224)
11 1y97_A Three prime repair exon 100.0 3.1E-30 1.1E-34 214.5 13.3 165 35-211 8-211 (238)
12 1wlj_A Interferon stimulated g 100.0 7.2E-30 2.5E-34 205.8 11.3 157 36-216 4-175 (189)
13 3v9w_A Ribonuclease T; DEDD nu 100.0 5.9E-29 2E-33 206.6 15.4 168 35-213 35-224 (235)
14 1zbh_A 3'-5' exonuclease ERI1; 100.0 3.3E-28 1.1E-32 209.3 17.7 164 36-210 77-263 (299)
15 2qxf_A Exodeoxyribonuclease I; 100.0 3.5E-28 1.2E-32 220.8 16.0 165 36-209 8-200 (482)
16 3cg7_A CRN-4, cell death-relat 100.0 8.6E-29 2.9E-33 213.8 11.4 161 35-209 17-208 (308)
17 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 7E-28 2.4E-32 211.1 12.2 164 36-210 127-313 (349)
18 4hec_A Putative uncharacterize 99.4 1E-12 3.6E-17 105.3 12.0 157 36-208 21-180 (190)
19 2kfn_A Klenow fragment of DNA 99.0 5.3E-09 1.8E-13 97.5 16.0 138 37-212 26-195 (605)
20 1x9m_A DNA polymerase; DNA plo 98.7 1.6E-07 5.4E-12 88.9 13.2 130 39-212 1-185 (698)
21 4gmj_B CCR4-NOT transcription 98.2 2.7E-05 9.2E-10 65.9 13.9 174 35-214 32-249 (285)
22 1qht_A Protein (DNA polymerase 98.1 7.9E-06 2.7E-10 78.1 8.7 92 35-156 133-228 (775)
23 2d5r_A CCR4-NOT transcription 97.9 0.00022 7.6E-09 59.2 13.3 171 36-214 23-239 (252)
24 1s5j_A DNA polymerase I; repli 97.9 2.2E-05 7.7E-10 75.7 7.7 101 34-156 187-296 (847)
25 2p51_A SPCC18.06C protein; DED 97.7 0.00064 2.2E-08 58.4 12.9 173 35-213 43-259 (333)
26 3iay_A DNA polymerase delta ca 97.6 0.00013 4.5E-09 70.8 8.4 98 35-153 247-351 (919)
27 1noy_A Protein (DNA polymerase 97.5 0.00047 1.6E-08 60.7 9.7 112 35-153 104-229 (388)
28 4dfk_A DNA polymerase I, therm 97.5 0.00017 5.7E-09 66.3 6.7 115 34-210 7-128 (540)
29 1uoc_A POP2; hydrolase, DEDD n 97.2 0.0071 2.4E-07 51.1 13.0 169 35-211 36-266 (289)
30 2gv9_A DNA polymerase; polymer 97.0 0.0023 7.7E-08 63.8 8.9 108 34-151 317-437 (1193)
31 3pv8_A DNA polymerase I; DNA p 96.0 0.035 1.2E-06 51.4 10.0 125 38-212 30-183 (592)
32 2py5_A DNA polymerase; protein 95.9 0.012 4E-07 54.4 6.5 74 35-154 4-77 (575)
33 3k59_A POL II, DNA polymerase 95.8 0.034 1.2E-06 53.2 9.4 92 34-153 150-242 (786)
34 3qex_A DNA polymerase, GP43; d 95.3 0.066 2.2E-06 51.9 9.4 106 36-152 107-231 (903)
35 3saf_A Exosome component 10; e 95.3 0.15 5.1E-06 45.3 11.1 128 36-212 128-279 (428)
36 3d45_A Poly(A)-specific ribonu 92.4 0.46 1.6E-05 43.0 8.4 78 133-211 277-393 (507)
37 2a1r_A Poly(A)-specific ribonu 92.3 1.1 3.8E-05 39.6 10.7 77 133-210 282-397 (430)
38 2e6m_A Werner syndrome ATP-dep 87.7 1.8 6.1E-05 33.8 7.3 39 119-165 87-125 (208)
39 3ikm_A DNA polymerase subunit 84.5 0.093 3.2E-06 51.4 -2.1 34 134-169 196-229 (1172)
40 1yt3_A Ribonuclease D, RNAse D 80.9 12 0.00041 32.0 10.1 84 118-212 64-172 (375)
41 2hbj_A Exosome complex exonucl 70.2 16 0.00056 31.7 8.2 82 119-211 150-255 (410)
42 1vk0_A Hypothetical protein; h 54.4 22 0.00075 27.9 5.5 42 119-168 99-140 (206)
43 3cym_A Uncharacterized protein 53.7 77 0.0026 27.7 9.5 78 118-211 85-188 (440)
44 2a1r_A Poly(A)-specific ribonu 51.8 13 0.00045 32.7 4.1 47 35-81 20-94 (430)
45 2a6p_A Possible phosphoglycera 21.9 1.3E+02 0.0043 22.9 4.9 34 109-142 120-156 (208)
46 1v37_A Phosphoglycerate mutase 21.1 85 0.0029 23.2 3.6 30 109-140 106-135 (177)
47 3d45_A Poly(A)-specific ribonu 20.9 39 0.0013 30.3 1.8 48 35-82 22-97 (507)
48 3q7c_A Nucleoprotein; deddh ex 20.7 2.9E+02 0.0098 21.9 6.5 137 35-200 55-212 (243)
49 2x5h_A ORF 131; viral protein; 20.4 49 0.0017 22.2 1.8 58 54-127 34-91 (97)
No 1
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=100.00 E-value=2e-45 Score=296.59 Aligned_cols=180 Identities=43% Similarity=0.682 Sum_probs=159.4
Q ss_pred cCCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCH
Q 027892 34 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE 113 (217)
Q Consensus 34 ~~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~ 113 (217)
+...+|||+|+|||||+|.+|+|||||||+.+++...+.+.++.+|+|+......+.+++..+|.+||||+++++++|++
T Consensus 6 ~~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~ 85 (186)
T 3tr8_A 6 FSDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDE 85 (186)
T ss_dssp CCTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCH
T ss_pred CCCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCH
Confidence 46679999999999999999999999999889877666666777898776554456678888889999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCChH
Q 027892 114 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRAL 193 (217)
Q Consensus 114 ~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~Al 193 (217)
++|+++|++|++++++++.++|||||++||+.||++++++++.+++++.+|++++.+++|+|+|+..+ +++..++|||+
T Consensus 86 ~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~~~-~~~~~~~HrAl 164 (186)
T 3tr8_A 86 VEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIAA-AHIKESQHLAL 164 (186)
T ss_dssp HHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHHHT-TSCCCCCSCHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCccccc-cCCCCCCcChH
Confidence 99999999999877666667899999999999999999999988999999988886799999998764 67889999999
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 027892 194 DDIRESIMELKYYKENIFKTN 214 (217)
Q Consensus 194 ~Da~at~~ll~~~~~~~~~~~ 214 (217)
+||++|+++|+||++.+|+..
T Consensus 165 ~Da~ati~~l~~y~~~~~~~~ 185 (186)
T 3tr8_A 165 QDIRDSIEELRYYRAHLLNLS 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHTBCC-
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999864
No 2
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=100.00 E-value=3.5e-41 Score=269.62 Aligned_cols=177 Identities=45% Similarity=0.701 Sum_probs=156.1
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHH
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 114 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~ 114 (217)
...+||++|+||||++|.+++|||||+|+++++...+.+.|+.+|+|+.++++.+++|++.+|.+||||++++.++|++.
T Consensus 3 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~ 82 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDR 82 (180)
T ss_dssp GGGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHH
T ss_pred CCCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHH
Confidence 45689999999999999999999999998887665555568999999998888888898887789999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCChHH
Q 027892 115 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALD 194 (217)
Q Consensus 115 e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~Al~ 194 (217)
+++++|.+|++++.+++..++||||+.||+.||++++++++.+++++++|+.++.+++++++|.... +++..++|||++
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~~~~-~i~~~~~H~Al~ 161 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILD-GFTKQGTHQAMD 161 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGGGGG-GSCCCCCCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChHhhh-CCCCcCCcCcHH
Confidence 9999999999986555546799999999999999999988877888999977776689999987543 567788999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 027892 195 DIRESIMELKYYKENIFK 212 (217)
Q Consensus 195 Da~at~~ll~~~~~~~~~ 212 (217)
||++|+++++++++.+|+
T Consensus 162 Da~ata~l~~~~~~~~~~ 179 (180)
T 2igi_A 162 DIRESVAELAYYREHFIK 179 (180)
T ss_dssp HHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999985
No 3
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=100.00 E-value=6.7e-41 Score=271.64 Aligned_cols=177 Identities=41% Similarity=0.609 Sum_probs=156.3
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHH
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 114 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~ 114 (217)
...+||++|+||||++|.+|+|||||+|..++++..+.+.|+.+|+|+.++.+.+++|+..++.+||||++++.++|+++
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~ 86 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHA 86 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHH
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHH
Confidence 45789999999999999999999999998887764456679999999987766667788877788999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCChHH
Q 027892 115 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALD 194 (217)
Q Consensus 115 e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~Al~ 194 (217)
+++++|.+|+++.+++++++|||||+.||+.||++++++++.+++++.+|+.++.+++++++|.... +++...+|||++
T Consensus 87 ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l~~l~~~~~p~~~~-~i~~~~~H~Al~ 165 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRWAPAVAS-GFAKSSAHTALS 165 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCGGGGT-TCCCCSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHHHHHHHHhCHHHHh-CCCCCCCcccHH
Confidence 9999999999997666666799999999999999999998888889999999988899999987543 367788999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 027892 195 DIRESIMELKYYKENIFK 212 (217)
Q Consensus 195 Da~at~~ll~~~~~~~~~ 212 (217)
||++|+++|++|++.+|+
T Consensus 166 Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 166 DVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp HHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999885
No 4
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=3.7e-32 Score=219.61 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=127.2
Q ss_pred cCCCCEEEEEecCCCCCC-----CCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHh
Q 027892 34 EYKMPLVWIDLEMTGLKI-----EVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLH 108 (217)
Q Consensus 34 ~~~~~~v~lD~ETTGl~p-----~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~ 108 (217)
.+..+||++|+||||++| ..++|||||+|.+++... +.+.|+.+|+|..+++ ++++ .+||||++++.
T Consensus 6 ~m~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~-~~~~f~~lv~P~~~i~----~~~~---~i~GIt~~~l~ 77 (194)
T 2gui_A 6 TAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRL-TGNNFHVYLKPDRLVD----PEAF---GVHGIADEFLL 77 (194)
T ss_dssp --CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEE-CSCCEEEECCCSSCCC----HHHH---HHHCCCHHHHT
T ss_pred cccCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeE-eccEEEEEECcCCcCC----HHHH---HhhCcCHHHHh
Confidence 466899999999999999 569999999995543322 3456899999987664 4455 67799999999
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCC-----CceeehHHHHHHHHHhCCCccc--
Q 027892 109 SGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFS-----HVLVDVSSIKALCMRWYPRDYR-- 181 (217)
Q Consensus 109 ~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~-----~~~iDt~~l~~la~~~~p~~~~-- 181 (217)
++|++.+++.+|.+|+++ .++||||+.||+.||++++.++|.+++ .+++||. .++++++|....
T Consensus 78 ~~~~~~~v~~~~~~~l~~------~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~---~l~~~~~p~~~~~L 148 (194)
T 2gui_A 78 DKPTFAEVADEFMDYIRG------AELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSL---AVARKMFPGKRNSL 148 (194)
T ss_dssp TSCCHHHHHHHHHHHHTT------SEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHH---HHHHHHSTTSCCSH
T ss_pred CCCCHHHHHHHHHHHHCC------CeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHH---HHHHHHcCCCCCCH
Confidence 999999999999999987 468999999999999999988886533 5799997 567777775421
Q ss_pred ------CCCCCC--CCCChHHHHHHHHHHHHHHHHH
Q 027892 182 ------KVPSKE--QKHRALDDIRESIMELKYYKEN 209 (217)
Q Consensus 182 ------~~l~~~--~~H~Al~Da~at~~ll~~~~~~ 209 (217)
.+++.. .+|+|++||++|++|++.+.+.
T Consensus 149 ~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 149 DALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp HHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 245544 4899999999999999887543
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.98 E-value=1.6e-32 Score=229.62 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=130.7
Q ss_pred cCCCCEEEEEecCCCCCCCCCcEEEEEEEEECCcee-----------------eeecCCceeecCCccchhhhhhHHhhh
Q 027892 34 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLT-----------------KSVEGPDLVIHQTKECLDSMGEWCQNH 96 (217)
Q Consensus 34 ~~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~-----------------~~~~~~~~li~p~~~i~~~~~~~~~~~ 96 (217)
.+-.+|||||+||||++|.+|+|||||+|.++++.. .+.+.|+++|+|..++++ .++
T Consensus 9 ~~~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~----~~~-- 82 (242)
T 3mxm_B 9 GHMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSP----GAS-- 82 (242)
T ss_dssp CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCH----HHH--
T ss_pred cccceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCH----HHH--
Confidence 356789999999999999999999999995543310 123468999999987754 333
Q ss_pred hhhcCCcHHHHhcC--CCHH-HHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhhhhcCC--C-CceeehHHHH
Q 027892 97 HEASGLTKKVLHSG--LTER-EAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLASLF--S-HVLVDVSSIK 169 (217)
Q Consensus 97 h~itGIt~~~l~~~--~~~~-e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~~~--~-~~~iDt~~l~ 169 (217)
.+||||++++.++ |++. +++++|.+|+++.. + ..++||||+ .||+.||++++.++|..+ . ..++|+..+.
T Consensus 83 -~i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~-~-~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~ 159 (242)
T 3mxm_B 83 -EITGLSKAELEVQGRQRFDDNLAILLRAFLQRQP-Q-PCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAAL 159 (242)
T ss_dssp -HHHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTSC-S-SEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHH
T ss_pred -HhcCCCHHHHHhcCCCchhHHHHHHHHHHHhcCC-C-CCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHH
Confidence 6779999999987 8996 99999999999831 1 136899996 999999999999988654 2 3689998766
Q ss_pred H-HHHHhCCC----ccc----------CCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 170 A-LCMRWYPR----DYR----------KVPSKEQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 170 ~-la~~~~p~----~~~----------~~l~~~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
+ +.++..|. ..+ ++++..++|||++||++|++|++++.+.+.
T Consensus 160 r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 160 KALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHHHHCC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 5 45554543 221 356777899999999999999998877653
No 6
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.98 E-value=1.3e-31 Score=215.52 Aligned_cols=155 Identities=23% Similarity=0.348 Sum_probs=125.8
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEE-ECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCH
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACII-TDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE 113 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~-~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~ 113 (217)
...+||+||+||||++|..++|||||+|. .+|... +.|+.+|+|..+++ ++++ .+||||++++.++|++
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~---~~f~~lv~P~~~i~----~~~~---~i~GIt~~~l~~~~~~ 79 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIV---DEYHTLIKPSREIS----RKSS---EITGITQEMLENKRSI 79 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEE---EEEEEECBCSSCCC----HHHH---HHHCCCHHHHTTCCBH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEE---EEEEEEECcCCCCC----HHHh---hhcCCCHHHHhcCCCH
Confidence 45789999999999999999999999995 445432 35889999988664 4555 6779999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCC-CCceeehHHHHHHHHHhCCCccc---------CC
Q 027892 114 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLF-SHVLVDVSSIKALCMRWYPRDYR---------KV 183 (217)
Q Consensus 114 ~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~-~~~~iDt~~l~~la~~~~p~~~~---------~~ 183 (217)
.+++.+|.+|+++ .++||||+.||++||++++.++|.++ +++++||. .+++++. .... .+
T Consensus 80 ~~v~~~~~~~l~~------~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~---~l~~~~~-~~~~~~L~~l~~~~g 149 (186)
T 2p1j_A 80 EEVLPEFLGFLED------SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTL---ALAKSLL-KLRSYSLDSVVEKLG 149 (186)
T ss_dssp HHHHHHHHHHSSS------CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHH---HHHHHHT-CCSCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHCC------CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHH---HHHHHHh-hcCCCCHHHHHHHcC
Confidence 9999999999987 46999999999999999999888654 67899997 5566655 2211 35
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHH
Q 027892 184 PSKEQKHRALDDIRESIMELKYYKEN 209 (217)
Q Consensus 184 l~~~~~H~Al~Da~at~~ll~~~~~~ 209 (217)
++..++|+|++||++|++|++.+.+.
T Consensus 150 i~~~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 150 LGPFRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 66677999999999999999887543
No 7
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=4.9e-32 Score=233.64 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=131.6
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEECCce-e----------------eeecCCceeecCCccchhhhhhHHhhhh
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKL-T----------------KSVEGPDLVIHQTKECLDSMGEWCQNHH 97 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~-~----------------~~~~~~~~li~p~~~i~~~~~~~~~~~h 97 (217)
+-.+|||||+||||+++.+|+|||||+|.++++. . .+.+.|+++|+|...+++. ++
T Consensus 10 ~~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~----a~--- 82 (314)
T 3u3y_B 10 HMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPG----AS--- 82 (314)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHH----HH---
T ss_pred ccCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHH----HH---
Confidence 4578999999999999999999999999654331 1 1234689999999877543 33
Q ss_pred hhcCCcHHHHhcC--CCH-HHHHHHHHHHHhhccCCCCceEEEec-HHHhHHHHHhHhhhhhcCCC---CceeehHHHHH
Q 027892 98 EASGLTKKVLHSG--LTE-REAEKQVVEFVKKNVGTYTPLLAGNS-VYVDFMFLKKYMPDLASLFS---HVLVDVSSIKA 170 (217)
Q Consensus 98 ~itGIt~~~l~~~--~~~-~e~~~~~~~~l~~~~~~~~~~lVghn-~~FD~~fL~~~~~~~~~~~~---~~~iDt~~l~~ 170 (217)
.+||||++++.++ |.+ ++++++|.+|+++.. + ..++|||| ++||+.||++++.++|..++ +.++|+..+++
T Consensus 83 ~IhGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~-~-~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r 160 (314)
T 3u3y_B 83 EITGLSKAELEVQGRQRFDDNLAILLRAFLQRQP-Q-PCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALK 160 (314)
T ss_dssp HHHSCCHHHHHHTTCCBSCHHHHHHHHHHHHTSC-S-SEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHH
T ss_pred HhcCCCHHHHHhCCCCCcHHHHHHHHHHHHhcCC-C-CcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHH
Confidence 6779999999988 889 799999999999831 1 24699999 99999999999999886543 45899987666
Q ss_pred -HHHHhCCCc----cc----------CCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 171 -LCMRWYPRD----YR----------KVPSKEQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 171 -la~~~~p~~----~~----------~~l~~~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
++++++|.. .+ ++++..++|||++||++|++|++++.+.+.
T Consensus 161 ~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 161 ALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHHTTC-------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHhCccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777766642 11 356778899999999999999998877653
No 8
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=1.3e-30 Score=211.75 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=128.2
Q ss_pred CCCCEEEEEecCCCCCC----CCCcEEEEEEEEECC-ceeeeecCCceeecCCc--cchhhhhhHHhhhhhhcCCcHHHH
Q 027892 35 YKMPLVWIDLEMTGLKI----EVDRILEIACIITDG-KLTKSVEGPDLVIHQTK--ECLDSMGEWCQNHHEASGLTKKVL 107 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p----~~d~IieIgav~~d~-~~~~~~~~~~~li~p~~--~i~~~~~~~~~~~h~itGIt~~~l 107 (217)
...+||+||+||||+++ ..++|||||+|.++. ++..+ +.|+.+|+|.. .+ +++++ .+||||++++
T Consensus 8 ~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~-~~f~~lv~P~~~~~i----~~~~~---~i~GIt~~~l 79 (204)
T 1w0h_A 8 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIE-DTFQQYVRPEINTQL----SDFCI---SLTGITQDQV 79 (204)
T ss_dssp SSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEE-EEEEEEBCCSSSCSC----CHHHH---HHHCCCHHHH
T ss_pred CcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEe-eeeeeEECCCCCCcc----CHHHH---HHhCCCHHHH
Confidence 45689999999999997 579999999997642 23322 45899999987 44 45555 6779999999
Q ss_pred hcCCCHHHHHHHHHHHHhhcc-CCCCceEEEecHHHhHH-HHHhHhhhhhcCCCC---ceeehHHHHHHHHHhCCCc-c-
Q 027892 108 HSGLTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFM-FLKKYMPDLASLFSH---VLVDVSSIKALCMRWYPRD-Y- 180 (217)
Q Consensus 108 ~~~~~~~e~~~~~~~~l~~~~-~~~~~~lVghn~~FD~~-fL~~~~~~~~~~~~~---~~iDt~~l~~la~~~~p~~-~- 180 (217)
.++|++.+|+.+|.+|+++.. .....++||||+.||+. ||++++.+.+..++. +++|+. +++++++|.. .
T Consensus 80 ~~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~---~l~~~~~~~~~~~ 156 (204)
T 1w0h_A 80 DRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIR---KSYGNFYKVPRSQ 156 (204)
T ss_dssp HTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHH---HHHHHHHTCCGGG
T ss_pred hCCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHH---HHHHHHhCCCCcc
Confidence 999999999999999999853 11123589999999997 999999888865543 789997 4555555431 1
Q ss_pred --------cCCCCCC-CCCChHHHHHHHHHHHHHHHHHh
Q 027892 181 --------RKVPSKE-QKHRALDDIRESIMELKYYKENI 210 (217)
Q Consensus 181 --------~~~l~~~-~~H~Al~Da~at~~ll~~~~~~~ 210 (217)
..+++.. .+|||++||++|++|+..+.+..
T Consensus 157 ~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 157 TKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp CSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 1355655 58999999999999999987754
No 9
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=214.67 Aligned_cols=159 Identities=15% Similarity=0.224 Sum_probs=127.7
Q ss_pred CCEEEEEecCCCCCCCCC--cEEEEEEEEECCc-eeeeecCCceeecCCc--cchhhhhhHHhhhhhhcCCcHHHHhcCC
Q 027892 37 MPLVWIDLEMTGLKIEVD--RILEIACIITDGK-LTKSVEGPDLVIHQTK--ECLDSMGEWCQNHHEASGLTKKVLHSGL 111 (217)
Q Consensus 37 ~~~v~lD~ETTGl~p~~d--~IieIgav~~d~~-~~~~~~~~~~li~p~~--~i~~~~~~~~~~~h~itGIt~~~l~~~~ 111 (217)
.+||++|+||||++|..+ +|||||||.+++. +. +.+.|+.+|+|.. .+ +++++ ++||||++++.++|
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~-i~~~f~~lV~P~~~~~i----~~~~~---~ltGIt~~~v~~a~ 102 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTME-IESTFHMYVQPVVHPQL----TPFCT---ELTGIIQAMVDGQP 102 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCC-EEEEEEEECCCSSSCSC----CHHHH---HHHCCCHHHHTTCC
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcE-EeeeeeeEECCCCCCcC----CHHHH---HHhCcCHHHHcCCC
Confidence 579999999999999865 9999999966554 33 2346999999986 44 45566 67799999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCceEEEecH--------HHhHHH-HHhHhhhhhcCCC---CceeehHHHHHHHHHhCCCc
Q 027892 112 TEREAEKQVVEFVKKNVGTYTPLLAGNSV--------YVDFMF-LKKYMPDLASLFS---HVLVDVSSIKALCMRWYPRD 179 (217)
Q Consensus 112 ~~~e~~~~~~~~l~~~~~~~~~~lVghn~--------~FD~~f-L~~~~~~~~~~~~---~~~iDt~~l~~la~~~~p~~ 179 (217)
++.+|+++|.+|+++. ++||||+ .||+.| |++++.+.|.+++ .+++|+...+++++++.|..
T Consensus 103 ~~~~v~~~f~~~l~~~------~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~ 176 (224)
T 2xri_A 103 SLQQVLERVDEWMAKE------GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKN 176 (224)
T ss_dssp CHHHHHHHHHHHHHHT------TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTT
T ss_pred CHHHHHHHHHHHHhhc------ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCC
Confidence 9999999999999984 4789999 999997 7788888886554 36899876667788777752
Q ss_pred c------cCCCCC-CCCCChHHHHHHHHHHHHHHHHH
Q 027892 180 Y------RKVPSK-EQKHRALDDIRESIMELKYYKEN 209 (217)
Q Consensus 180 ~------~~~l~~-~~~H~Al~Da~at~~ll~~~~~~ 209 (217)
. ..+++. +.+|||++||++|++|++.+.+.
T Consensus 177 ~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 177 GLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp THHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHc
Confidence 2 235655 46899999999999999988764
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=5.1e-30 Score=211.69 Aligned_cols=167 Identities=18% Similarity=0.150 Sum_probs=128.7
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEE----CCceeeeecCCceeecCC--ccchhhhhhHHhhhhhhcCCcHH-HH
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIIT----DGKLTKSVEGPDLVIHQT--KECLDSMGEWCQNHHEASGLTKK-VL 107 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~----d~~~~~~~~~~~~li~p~--~~i~~~~~~~~~~~h~itGIt~~-~l 107 (217)
...+||+||+||||++|..++|||||+|.+ +|... +.+.|+.+|+|. ..+ +++++ .+||||++ ++
T Consensus 27 ~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~-~~~~f~~lV~P~~~~~i----~~~~~---~ihGIt~e~~v 98 (224)
T 2f96_A 27 RGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLF-PEHTYFFRIEPFEGANI----EPAAL---EFTGIKLDHPL 98 (224)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEE-EEEEEEEEBCCCTTCBC----CHHHH---HHHTCCTTCTT
T ss_pred cCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCccc-ccceEEEEECCCCCCCC----CHHHH---HHhCCCHHHHH
Confidence 446899999999999999999999999955 45432 345689999994 455 34555 67799997 58
Q ss_pred hcCCCHHHHHHHHHHHHhhccC---CCCceEEEecHHHhHHHHHhHhhhhhcC---C-CCceeehHHHHHHHHHhCCCcc
Q 027892 108 HSGLTEREAEKQVVEFVKKNVG---TYTPLLAGNSVYVDFMFLKKYMPDLASL---F-SHVLVDVSSIKALCMRWYPRDY 180 (217)
Q Consensus 108 ~~~~~~~e~~~~~~~~l~~~~~---~~~~~lVghn~~FD~~fL~~~~~~~~~~---~-~~~~iDt~~l~~la~~~~p~~~ 180 (217)
.+++++.+++.+|.+|++++.. .+..++||||+.||+.||++++.+++.. + +++++||. +++++++|...
T Consensus 99 ~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~---~l~~~~~~~~~ 175 (224)
T 2f96_A 99 RMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTA---TLAGLAYGQTV 175 (224)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHH---HHHHHHHSCCS
T ss_pred hcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHH---HHHHHHcCCCC
Confidence 9999999999999999974321 0125699999999999999999888754 2 35689997 56666666432
Q ss_pred ------cCCCC--CCCCCChHHHHHHHHHHHHHHHHHhcc
Q 027892 181 ------RKVPS--KEQKHRALDDIRESIMELKYYKENIFK 212 (217)
Q Consensus 181 ------~~~l~--~~~~H~Al~Da~at~~ll~~~~~~~~~ 212 (217)
..+++ ...+|||++||++|++|++.+.+.+..
T Consensus 176 L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 176 LAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp HHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 13555 347999999999999999998877643
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=3.1e-30 Score=214.48 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=124.7
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEECCce--------------eeeecCCceeecCCccchhhhhhHHhhhhhhc
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKL--------------TKSVEGPDLVIHQTKECLDSMGEWCQNHHEAS 100 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~--------------~~~~~~~~~li~p~~~i~~~~~~~~~~~h~it 100 (217)
...+||+||+||||+++..++|||||+|.++++. ..+.+.|+.+|+|..+++ ++++ .+|
T Consensus 8 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~----~~~~---~i~ 80 (238)
T 1y97_A 8 RAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFT----AKAS---EIT 80 (238)
T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCC----HHHH---HHH
T ss_pred ccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCC----HHHH---HHh
Confidence 4468999999999999989999999999665431 012346899999988764 4455 677
Q ss_pred CCcHHHH--hcCCCH-HHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhhhhcCCC--CceeehHHHHHHHHH
Q 027892 101 GLTKKVL--HSGLTE-REAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLASLFS--HVLVDVSSIKALCMR 174 (217)
Q Consensus 101 GIt~~~l--~~~~~~-~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~~~~--~~~iDt~~l~~la~~ 174 (217)
|||++++ .++|++ ++++.+|.+|++... +..++||||+ .||+.||++++.+++..++ ++++||.. ++++
T Consensus 81 GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~---l~~~ 155 (238)
T 1y97_A 81 GLSSEGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLP---ALRG 155 (238)
T ss_dssp CCCHHHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHH---HHHH
T ss_pred CCCHHHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHH---HHHH
Confidence 9999999 467888 589999999998631 1246999999 9999999999999887664 56899974 4555
Q ss_pred hC---------CCccc----------CCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 175 WY---------PRDYR----------KVPSKEQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 175 ~~---------p~~~~----------~~l~~~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
+. |.... .+++...+|||++||++|+++++.+.+.++
T Consensus 156 ~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 156 LDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp HHHHC----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhccCccccCCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHH
Confidence 43 33221 356677899999999999999999987764
No 12
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=7.2e-30 Score=205.81 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=119.6
Q ss_pred CCCEEEEEecCCCCCCCC-CcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHH
Q 027892 36 KMPLVWIDLEMTGLKIEV-DRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 114 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~p~~-d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~ 114 (217)
..+||+||+||||++|.+ ++|+|||+|..+|+. + |+.+|+|..++++ +++ .+||||++++.++|++.
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~--i---~~~lV~P~~~i~~----~~~---~i~GIt~~~l~~a~~~~ 71 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAV--L---YDKFIRPEGEITD----YRT---RVSGVTPQHMVGATPFA 71 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCE--E---EEEEEECSSCEEE----CCH---HHHCCCHHHHTTCEEHH
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCE--E---EeeEecCCCCCCc----ccc---CCCCCCHHHHcCCCCHH
Confidence 468999999999999987 478899997555543 2 6789999887654 344 67899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHH-hCCCcc---------c-CC
Q 027892 115 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMR-WYPRDY---------R-KV 183 (217)
Q Consensus 115 e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~-~~p~~~---------~-~~ 183 (217)
+++.+|.+|+++ .++||||+.||+.||++++++ ..++||..+....+. ..|... . .+
T Consensus 72 ~v~~~~~~~l~~------~~lV~hn~~fD~~~L~~~~~~------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lg 139 (189)
T 1wlj_A 72 VARLEILQLLKG------KLVVGHDLKHDFQALKEDMSG------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLH 139 (189)
T ss_dssp HHHHHHHHHHTT------SEEEESSHHHHHHHTTCCCTT------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTC
T ss_pred HHHHHHHHHHCC------CEEEECCcHHHHHHHHHhCCC------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcC
Confidence 999999999987 469999999999999987542 458999865432221 233211 1 34
Q ss_pred CCCCC---CCChHHHHHHHHHHHHHHHHHhcccCCC
Q 027892 184 PSKEQ---KHRALDDIRESIMELKYYKENIFKTNLK 216 (217)
Q Consensus 184 l~~~~---~H~Al~Da~at~~ll~~~~~~~~~~~~~ 216 (217)
++... +|||++||++|++|++.+++.+.....+
T Consensus 140 i~~~~~~~~H~Al~Da~ata~l~~~l~~~~~~~~~~ 175 (189)
T 1wlj_A 140 KSIQNSLLGHSSVEDARATMELYQISQRIRARRGLP 175 (189)
T ss_dssp CCCSCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55544 9999999999999999999887765544
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.96 E-value=5.9e-29 Score=206.59 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=130.7
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEE----CCceeeeecCCceeecCC--ccchhhhhhHHhhhhhhcCCcHH-HH
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIIT----DGKLTKSVEGPDLVIHQT--KECLDSMGEWCQNHHEASGLTKK-VL 107 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~----d~~~~~~~~~~~~li~p~--~~i~~~~~~~~~~~h~itGIt~~-~l 107 (217)
....||++|+||||++|..++|||||+|.+ +|... +.+.|+.+|+|. ..+ +++++ .+||||++ ++
T Consensus 35 ~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~-~~~~f~~~v~P~~~~~i----~~~~~---~i~GIt~e~~v 106 (235)
T 3v9w_A 35 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLM-PDTTLHFHVEPFVGANL----QPEAL---AFNGIDPNDPD 106 (235)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEE-EEEEEEEEBCCCTTCBC----CHHHH---HHHCCCTTCGG
T ss_pred cCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCccc-ccceEEEEECCCCCCCC----CHHHH---HHhCCCHHHHH
Confidence 446799999999999999999999999954 45432 345789999995 344 34555 67799998 99
Q ss_pred hcCCCHHHHHHHHHHHHhhccCC---CCceEEEecHHHhHHHHHhHhhhhhcCC---C-CceeehHHHHHHHHHhCCCcc
Q 027892 108 HSGLTEREAEKQVVEFVKKNVGT---YTPLLAGNSVYVDFMFLKKYMPDLASLF---S-HVLVDVSSIKALCMRWYPRDY 180 (217)
Q Consensus 108 ~~~~~~~e~~~~~~~~l~~~~~~---~~~~lVghn~~FD~~fL~~~~~~~~~~~---~-~~~iDt~~l~~la~~~~p~~~ 180 (217)
.++|++.+++.+|.+|++++.+. +..++||||+.||+.||++++.++|... + ++++||. .+++.++|...
T Consensus 107 ~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~---~la~~~~p~~~ 183 (235)
T 3v9w_A 107 RGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTA---ALAGLALGQTV 183 (235)
T ss_dssp GCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHH---HHHHHHHSCCS
T ss_pred hcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhH---HHHHHHhCCCC
Confidence 99999999999999999754321 1257999999999999999999888633 2 4689997 55666666532
Q ss_pred ------cCCCCC--CCCCChHHHHHHHHHHHHHHHHHhccc
Q 027892 181 ------RKVPSK--EQKHRALDDIRESIMELKYYKENIFKT 213 (217)
Q Consensus 181 ------~~~l~~--~~~H~Al~Da~at~~ll~~~~~~~~~~ 213 (217)
.++++. ..+|+|++||.+|++|+..+.+.+...
T Consensus 184 L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~~ 224 (235)
T 3v9w_A 184 LSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRL 224 (235)
T ss_dssp HHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHhc
Confidence 124443 369999999999999999998876543
No 14
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=209.27 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=126.3
Q ss_pred CCCEEEEEecCCCCC----CCCCcEEEEEEEEECC-ceeeeecCCceeecCCc--cchhhhhhHHhhhhhhcCCcHHHHh
Q 027892 36 KMPLVWIDLEMTGLK----IEVDRILEIACIITDG-KLTKSVEGPDLVIHQTK--ECLDSMGEWCQNHHEASGLTKKVLH 108 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~----p~~d~IieIgav~~d~-~~~~~~~~~~~li~p~~--~i~~~~~~~~~~~h~itGIt~~~l~ 108 (217)
...||+||+||||++ +..++|||||+|.+++ .+.. .+.|+.+|+|.. .+ +++++ .+||||++++.
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i-~~~f~~lV~P~~~~~i----~~~~~---~ihGIt~e~v~ 148 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEI-EDTFQQYVRPEINTQL----SDFCI---SLTGITQDQVD 148 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCE-EEEEEEEBCCSSSCSC----CHHHH---HHHCCCHHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeE-eeeeeeeecCCCCCCC----CHHHH---HHhCCCHHHHh
Confidence 468999999999997 5679999999996654 3333 346999999987 44 45666 66799999999
Q ss_pred cCCCHHHHHHHHHHHHhhc-cCCCCceEEEecHHHhHH-HHHhHhhhhhcCCC---CceeehHHHHHHHHHhC--CC---
Q 027892 109 SGLTEREAEKQVVEFVKKN-VGTYTPLLAGNSVYVDFM-FLKKYMPDLASLFS---HVLVDVSSIKALCMRWY--PR--- 178 (217)
Q Consensus 109 ~~~~~~e~~~~~~~~l~~~-~~~~~~~lVghn~~FD~~-fL~~~~~~~~~~~~---~~~iDt~~l~~la~~~~--p~--- 178 (217)
++|++.+|+.+|.+|+++. .+....++||||+.||+. ||++++.+++..++ +.++|+..++ +.++ +.
T Consensus 149 ~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~---~~~~~~~~~~~ 225 (299)
T 1zbh_A 149 RADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY---GNFYKVPRSQT 225 (299)
T ss_dssp TSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH---HHHHTCCGGGC
T ss_pred cCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHH---HHHhCCCCCCc
Confidence 9999999999999999984 111113689999999999 99999988876544 3689997433 3332 21
Q ss_pred -c----ccCCCCCC-CCCChHHHHHHHHHHHHHHHHHh
Q 027892 179 -D----YRKVPSKE-QKHRALDDIRESIMELKYYKENI 210 (217)
Q Consensus 179 -~----~~~~l~~~-~~H~Al~Da~at~~ll~~~~~~~ 210 (217)
+ ..++++.. .+|||++||++|++|++.+.+..
T Consensus 226 ~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 226 KLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp SHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 1 01356665 48999999999999999987764
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.96 E-value=3.5e-28 Score=220.76 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=125.0
Q ss_pred CCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCC-CHH
Q 027892 36 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGL-TER 114 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~-~~~ 114 (217)
..+|||+|+||||++|..++|||||+|.+++++.++++.|+.+|+|...+.+ ++.+. .+||||++++.+++ .+.
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp--~p~a~---~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP--QPGAV---LITGITPQEARAKGENEA 82 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCC--CHHHH---HHHCCCHHHHHHHCBCHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCC--CHHHH---HHhCCCHHHHhcCCCCHH
Confidence 4679999999999999999999999998775555555559999999986611 11222 57799999998654 569
Q ss_pred HHHHHHHHHHhhccCCCCceEEEec-HHHhHHHHHhHhhhhhc-CCC------CceeehHHHHHHHHHhCC---------
Q 027892 115 EAEKQVVEFVKKNVGTYTPLLAGNS-VYVDFMFLKKYMPDLAS-LFS------HVLVDVSSIKALCMRWYP--------- 177 (217)
Q Consensus 115 e~~~~~~~~l~~~~~~~~~~lVghn-~~FD~~fL~~~~~~~~~-~~~------~~~iDt~~l~~la~~~~p--------- 177 (217)
+++.+|.+|++. ++ .++|||| ++||+.||++++.+.+. +++ +..+||..+.+.+..+.|
T Consensus 83 evl~~f~~~l~~---~~-~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~ 158 (482)
T 2qxf_A 83 AFAARIHSLFTV---PK-TCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 158 (482)
T ss_dssp HHHHHHHHHHTS---TT-EEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCT
T ss_pred HHHHHHHHHHcC---CC-CEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccc
Confidence 999999999982 01 4699999 89999999999988763 233 568899877666555443
Q ss_pred -Cccc---------CCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 027892 178 -RDYR---------KVPSKEQKHRALDDIRESIMELKYYKEN 209 (217)
Q Consensus 178 -~~~~---------~~l~~~~~H~Al~Da~at~~ll~~~~~~ 209 (217)
+..+ .+++...+|||++||++|++|++.+++.
T Consensus 159 ~~~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 159 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp TSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1111 3567788999999999999999998754
No 16
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.96 E-value=8.6e-29 Score=213.75 Aligned_cols=161 Identities=13% Similarity=0.057 Sum_probs=123.4
Q ss_pred CCCCEEEEEecCCCCCCCCC---cEEEEEEEEECC-ceeee-ecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhc
Q 027892 35 YKMPLVWIDLEMTGLKIEVD---RILEIACIITDG-KLTKS-VEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHS 109 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d---~IieIgav~~d~-~~~~~-~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~ 109 (217)
...+||+||+||||+++.++ +|||||||.+|. +..+. .+.|+.+|+|... +.++++++ ++||||++++.+
T Consensus 17 ~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~--p~i~~~~~---~ltGIt~e~v~~ 91 (308)
T 3cg7_A 17 PFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLN--RTLTKNCV---DFTGIPQRSIDT 91 (308)
T ss_dssp CCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSB--CSCCHHHH---HHHCCCHHHHHT
T ss_pred CCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCC--CCCCHHHH---HHcCCCHHHHhc
Confidence 34689999999999999877 999999997743 22222 1268999999874 11245555 677999999999
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCceEEEecH------HHhH-HHHHhHhhhhhcCCC---CceeehHHHHHHHHHhCCCc
Q 027892 110 GLTEREAEKQVVEFVKKNVGTYTPLLAGNSV------YVDF-MFLKKYMPDLASLFS---HVLVDVSSIKALCMRWYPRD 179 (217)
Q Consensus 110 ~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~------~FD~-~fL~~~~~~~~~~~~---~~~iDt~~l~~la~~~~p~~ 179 (217)
+|++.+|+.+|.+|+++. ++||||+ .||+ .||++++.+.|..++ .+++||..+ ++++++..
T Consensus 92 ap~~~evl~~f~~~l~~~------~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l---~~~~~~~~ 162 (308)
T 3cg7_A 92 ADTFDVVYEQFQQWLITL------GLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKI---FTNEMDRM 162 (308)
T ss_dssp SCBHHHHHHHHHHHHHHH------CCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHH---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC------CcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHH---HHHHhccc
Confidence 999999999999999984 3688888 9999 799999988886655 368999844 34333211
Q ss_pred c---------------cCCCCCCC-CCChHHHHHHHHHHHHHHHHH
Q 027892 180 Y---------------RKVPSKEQ-KHRALDDIRESIMELKYYKEN 209 (217)
Q Consensus 180 ~---------------~~~l~~~~-~H~Al~Da~at~~ll~~~~~~ 209 (217)
. ..+++... +|||++||++|++|++.+.+.
T Consensus 163 ~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 163 GPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp CCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 1 13566555 499999999999999988765
No 17
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.95 E-value=7e-28 Score=211.15 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=125.7
Q ss_pred CCCEEEEEecCCCCC----CCCCcEEEEEEEEECC-ceeeeecCCceeecCCc--cchhhhhhHHhhhhhhcCCcHHHHh
Q 027892 36 KMPLVWIDLEMTGLK----IEVDRILEIACIITDG-KLTKSVEGPDLVIHQTK--ECLDSMGEWCQNHHEASGLTKKVLH 108 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~----p~~d~IieIgav~~d~-~~~~~~~~~~~li~p~~--~i~~~~~~~~~~~h~itGIt~~~l~ 108 (217)
...||+||+||||++ +..++|||||+|.+++ .+.. .+.|+.+|+|.. .+ +++++ .+||||++++.
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i-~~~f~~lVkP~~~~~I----~~~~t---~ihGIT~e~v~ 198 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEI-EDTFQQYVRPEINTQL----SDFCI---SLTGITQDQVD 198 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEE-EEEECCBEECSSSCSC----CHHHH---HHHCCCHHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceE-eEEEEEEECCCCCCCC----CHHHH---HHhCCCHHHHh
Confidence 468999999999996 5679999999996654 3333 346899999987 55 45566 66799999999
Q ss_pred cCCCHHHHHHHHHHHHhhc-cCCCCceEEEecHHHhHH-HHHhHhhhhhcCCC---CceeehHHHHHHHHHhC--CC---
Q 027892 109 SGLTEREAEKQVVEFVKKN-VGTYTPLLAGNSVYVDFM-FLKKYMPDLASLFS---HVLVDVSSIKALCMRWY--PR--- 178 (217)
Q Consensus 109 ~~~~~~e~~~~~~~~l~~~-~~~~~~~lVghn~~FD~~-fL~~~~~~~~~~~~---~~~iDt~~l~~la~~~~--p~--- 178 (217)
++|++.+|+.+|.+|+++. .+....++||||+.||+. ||++++.+++..++ +.++|+..++ +.++ +.
T Consensus 199 ~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~---~~~~~~~~~~~ 275 (349)
T 1zbu_A 199 RADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSY---GNFYKVPRSQT 275 (349)
T ss_dssp TSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHH---HHHHTCCGGGG
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHH---HHHhcCCCCCC
Confidence 9999999999999999884 111113699999999999 99999988876544 3689997443 3332 21
Q ss_pred -c----ccCCCCCC-CCCChHHHHHHHHHHHHHHHHHh
Q 027892 179 -D----YRKVPSKE-QKHRALDDIRESIMELKYYKENI 210 (217)
Q Consensus 179 -~----~~~~l~~~-~~H~Al~Da~at~~ll~~~~~~~ 210 (217)
+ ..++++.. .+|||++||++|++|++.+.+..
T Consensus 276 ~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 276 KLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp SHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 11356655 48999999999999999887764
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.44 E-value=1e-12 Score=105.27 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=99.2
Q ss_pred CCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHH
Q 027892 36 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTERE 115 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e 115 (217)
.+.-+|+|||+||. ....++|+||+|..||. + |+.....-. +...++|+... .+.+|...-.....+..+
T Consensus 21 ~m~r~FlDTEFt~d-~~~~eLISIGlV~EdGr--E----FYav~~d~d--~~~~~~wVr~~-Vlp~L~~~~~~~~~s~~~ 90 (190)
T 4hec_A 21 SMVRYFYDTEFIED-GHTIELISIGVVAEDGR--E----YYAVSTEFD--PERAGSWVRTH-VLPKLPPPASQLWRSRQQ 90 (190)
T ss_dssp CEEEEEEEEEEEEC-SSCEEEEEEEEEETTSC--E----EEEEETTSC--GGGCCHHHHHH-TGGGSCCTTSTTEECHHH
T ss_pred ceeEEEEeeeecCC-CCCCCEEEEEEEcCCCC--E----EEEEecCCC--hhhCcHHHHhc-cccCCCCCcccccCCHHH
Confidence 46678999999984 45689999999977764 2 444443211 12335676643 345554333233357999
Q ss_pred HHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhh---cCCCCceeehHHHHHHHHHhCCCcccCCCCCCCCCCh
Q 027892 116 AEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLA---SLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRA 192 (217)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~---~~~~~~~iDt~~l~~la~~~~p~~~~~~l~~~~~H~A 192 (217)
+..+|.+||.... ...+.|++++..||..+|.+.+...+ ..++....|+..+.+.+. .|.+. .....+|+|
T Consensus 91 i~~~L~~FL~~~~-~~~~eLwa~~~~yD~~~L~ql~g~m~~lP~~~p~~~~dlr~~~~~~g--~~~lp---~~~~~~H~A 164 (190)
T 4hec_A 91 IRLDLEEFLRIDG-TDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRG--CPRMP---PRPRDVHDA 164 (190)
T ss_dssp HHHHHHHHTTTTS-SCEEEEEESSCHHHHHHHHTTTSSGGGSCTTSCSSCEEHHHHHHHTT--CCCCC---C-----CCH
T ss_pred HHHHHHHHHHhcC-CCCCEEEEecccccHHHHHHHhcccccCCcccchhhHHHHHHHHHcC--CCCCC---CCCCCCcCc
Confidence 9999999997632 12245899999999999998764332 223434567765443321 23221 235678999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027892 193 LDDIRESIMELKYYKE 208 (217)
Q Consensus 193 l~Da~at~~ll~~~~~ 208 (217)
|.||++.+..++.+..
T Consensus 165 L~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 165 LVDARDQLRRFRLITS 180 (190)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999998888754
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.03 E-value=5.3e-09 Score=97.47 Aligned_cols=138 Identities=13% Similarity=0.080 Sum_probs=93.8
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHHH
Q 027892 37 MPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREA 116 (217)
Q Consensus 37 ~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e~ 116 (217)
..++++|+||||+++..++|++||++..++.. ++|.+... +++ ..+.+++.++
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~--------~yip~~~~----------------~~~---~~~~l~~~~v 78 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAIEPGVA--------AYIPVAHD----------------YLD---APDQISRERA 78 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEEETTEE--------EEEECCCC----------------STT---CCCCCCHHHH
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEEcCCcE--------EEEecccc----------------ccc---cccccCHHHH
Confidence 47799999999999988999999987544432 23422110 111 1234568889
Q ss_pred HHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccC----------CCCC
Q 027892 117 EKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRK----------VPSK 186 (217)
Q Consensus 117 ~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~----------~l~~ 186 (217)
+..|.+|+.+. ..++||||+.||+.+|.+ +|..++..++||. -+++.+.|....+ +...
T Consensus 79 l~~L~~~L~d~----~i~kV~hnak~D~~~L~~----~Gi~l~~~~~DT~---laayLL~p~~~~~~L~~La~~~Lg~~~ 147 (605)
T 2kfn_A 79 LELLKPLLEDE----KALKVGQNLKYDRGILAN----YGIELRGIAFDTM---LESYILNSVAGRHDMDSLAERWLKHKT 147 (605)
T ss_dssp HHHHHHHHTCT----TSCEEESSHHHHHHHHHT----TTCCCCCEEEEHH---HHHHHHCTTSSCCSHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCC----CCeEEEECcHHHHHHHHH----CCCCCCCccccHH---HHHHHhCCCCCCCCHHHHHHHhcCCCc
Confidence 99999999872 135899999999999986 3655666689996 3445555643221 1110
Q ss_pred ---------------C-------CCCChHHHHHHHHHHHHHHHHHhcc
Q 027892 187 ---------------E-------QKHRALDDIRESIMELKYYKENIFK 212 (217)
Q Consensus 187 ---------------~-------~~H~Al~Da~at~~ll~~~~~~~~~ 212 (217)
. ..|.|..||.+|.+|+..+.+.+..
T Consensus 148 i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 148 ITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1256899999999999988876643
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.69 E-value=1.6e-07 Score=88.90 Aligned_cols=130 Identities=11% Similarity=-0.050 Sum_probs=80.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHHHHH
Q 027892 39 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEK 118 (217)
Q Consensus 39 ~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e~~~ 118 (217)
+|+||+||||+++..++|..|.+. +..... ...+.|. .+.+.++
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~--~~~~~~-----~~~~~p~-----------------------------~i~~~l~ 44 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIY--DYSTAE-----YVSYRPS-----------------------------DFGAYLD 44 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEE--ETTTTE-----EEEECGG-----------------------------GHHHHHH
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEE--ecCCCc-----EEEEChH-----------------------------HHHHHHH
Confidence 589999999999988876544433 321101 0122221 1123455
Q ss_pred HHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhh---hhcCCC-CceeehHHHHHHHHHhCCCcccCC--------C-
Q 027892 119 QVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD---LASLFS-HVLVDVSSIKALCMRWYPRDYRKV--------P- 184 (217)
Q Consensus 119 ~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~---~~~~~~-~~~iDt~~l~~la~~~~p~~~~~~--------l- 184 (217)
.|.+|+.. ..++||||+ .||+.+|.+.+.+ .|..++ ..++||. -+++.+.|....++ +
T Consensus 45 ~L~~~l~~-----~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTm---laayLL~p~~~~~~L~~La~~~L~ 116 (698)
T 1x9m_A 45 ALEAEVAR-----GGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTL---VLSRLIHSNLKDTDMGLLRSGKLP 116 (698)
T ss_dssp HHHHHHHT-----TCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHH---HHHHHHTTTSCCCTTTTSCGGGSC
T ss_pred HHHHHHhc-----CCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHH---HHHHHhCCCCCCCCHHHHHHHHcc
Confidence 67777752 145899999 9999999987532 244555 5789997 34555555332111 0
Q ss_pred ---------------C-----------CC---------------CCCChHHHHHHHHHHHHHHHHHhcc
Q 027892 185 ---------------S-----------KE---------------QKHRALDDIRESIMELKYYKENIFK 212 (217)
Q Consensus 185 ---------------~-----------~~---------------~~H~Al~Da~at~~ll~~~~~~~~~ 212 (217)
. .+ ..|.|..||.+|.+|+..+.+.+..
T Consensus 117 ~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~ 185 (698)
T 1x9m_A 117 GALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHY 185 (698)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTT
T ss_pred cchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 0356889999999999998876543
No 21
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.23 E-value=2.7e-05 Score=65.91 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=99.3
Q ss_pred CCCCEEEEEecCCCCCCCC---------------------CcEEEEEEEEECCceeee----ecCCceeecCCccchhhh
Q 027892 35 YKMPLVWIDLEMTGLKIEV---------------------DRILEIACIITDGKLTKS----VEGPDLVIHQTKECLDSM 89 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~---------------------d~IieIgav~~d~~~~~~----~~~~~~li~p~~~i~~~~ 89 (217)
...+||++|+|-+|+.... -.|||+|..+.+.+.... .-.|+..+.+.+..-.
T Consensus 32 ~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~-- 109 (285)
T 4gmj_B 32 RKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYA-- 109 (285)
T ss_dssp HHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCC--
T ss_pred hcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEecccccccc--
Confidence 3468999999999985331 149999998766443211 1125555555543211
Q ss_pred hhHHhhhhhhcCCc-HHHHhcCCCHHHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhh-------------hh
Q 027892 90 GEWCQNHHEASGLT-KKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPD-------------LA 155 (217)
Q Consensus 90 ~~~~~~~h~itGIt-~~~l~~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~-------------~~ 155 (217)
.+++.- -.-+||. +.....|.+..+..+.+.... .+-.....+|.++..||+.+|-+.+.. +.
T Consensus 110 ~~SI~f-L~~~G~DF~k~~~~GI~~~~f~ell~~sg--lvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~ 186 (285)
T 4gmj_B 110 QDSIEL-LTTSGIQFKKHEEEGIETQYFAELLMTSG--VVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILR 186 (285)
T ss_dssp HHHHHH-HHHHTCCHHHHHHHCBCHHHHHHHHHTSS--SSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHH
T ss_pred HHHHHH-HHHcCCCHHHHHHcCCCHHHHHHHHHHhH--HHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 111111 1234886 445567777765433332111 111112457887778999999887531 11
Q ss_pred cCCCCceeehHHHHHHHHHhCCCccc-----CCCCCCCCCChHHHHHHHHHHHHHHHHHhcccC
Q 027892 156 SLFSHVLVDVSSIKALCMRWYPRDYR-----KVPSKEQKHRALDDIRESIMELKYYKENIFKTN 214 (217)
Q Consensus 156 ~~~~~~~iDt~~l~~la~~~~p~~~~-----~~l~~~~~H~Al~Da~at~~ll~~~~~~~~~~~ 214 (217)
..|| .++|+..|++.+..+...+.. ...+.+..|.|-.|+..|+.++..+++.+|..+
T Consensus 187 ~~FP-~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~~~ 249 (285)
T 4gmj_B 187 LFFP-VIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249 (285)
T ss_dssp HHCS-CEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCc-hhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 2344 477886443222111111100 112456789999999999999999999988654
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.08 E-value=7.9e-06 Score=78.10 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCEEEEEecCCC---CCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCC
Q 027892 35 YKMPLVWIDLEMTG---LKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGL 111 (217)
Q Consensus 35 ~~~~~v~lD~ETTG---l~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~ 111 (217)
.+-++++||+||+| ++|..|+|++||....++.. . . ..++ + ....+...+
T Consensus 133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~-~-~-----t~~~---i-----------------~~~~v~~~~ 185 (775)
T 1qht_A 133 EELTMLAFAIATLYHEGEEFGTGPILMISYADGSEAR-V-I-----TWKK---I-----------------DLPYVDVVS 185 (775)
T ss_dssp CCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEE-E-E-----ESSC---C-----------------CCSSEEECS
T ss_pred CCcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCe-e-E-----eecc---c-----------------cccceEEcC
Confidence 46799999999999 78889999999975333221 1 0 0111 0 001122346
Q ss_pred CHHHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhhhhc
Q 027892 112 TEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLAS 156 (217)
Q Consensus 112 ~~~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~ 156 (217)
+..+.+..|.+++...- | .++||||. .||+++|..-+..++.
T Consensus 186 ~E~~LL~~f~~~i~~~d-P--DiivGyN~~~FDlpyL~~Ra~~~gi 228 (775)
T 1qht_A 186 TEKEMIKRFLRVVREKD-P--DVLITYNGDNFDFAYLKKRCEELGI 228 (775)
T ss_dssp CHHHHHHHHHHHHHHHC-C--SEEEESSTTTTHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcC-C--CEEEEeCCCCccHHHHHHHHHHcCC
Confidence 78889999999998752 2 37999998 8999999887765543
No 23
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.92 E-value=0.00022 Score=59.23 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=100.3
Q ss_pred CCCEEEEEecCCCCCCC---------------------CCcEEEEEEEEECCceeee----ecCCceeecCCccchhhhh
Q 027892 36 KMPLVWIDLEMTGLKIE---------------------VDRILEIACIITDGKLTKS----VEGPDLVIHQTKECLDSMG 90 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~p~---------------------~d~IieIgav~~d~~~~~~----~~~~~~li~p~~~i~~~~~ 90 (217)
..+||++|+|-+|+... .-.|||+|....+.+.... .-.|+......+..-. .
T Consensus 23 ~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~--~ 100 (252)
T 2d5r_A 23 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYA--Q 100 (252)
T ss_dssp HCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCC--H
T ss_pred hCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccC--H
Confidence 46899999999999632 1369999988766443310 1124444343332111 1
Q ss_pred hHHhhhhhhcCCc-HHHHhcCCCHHHHHHHHHHHHhh--ccCCCCceEEEecHHHhHHHHHhHhh-------------hh
Q 027892 91 EWCQNHHEASGLT-KKVLHSGLTEREAEKQVVEFVKK--NVGTYTPLLAGNSVYVDFMFLKKYMP-------------DL 154 (217)
Q Consensus 91 ~~~~~~h~itGIt-~~~l~~~~~~~e~~~~~~~~l~~--~~~~~~~~lVghn~~FD~~fL~~~~~-------------~~ 154 (217)
+++.- -.-+||. +.....|.+..+. .+.+-. .+-.....+|.++..||+.+|-+.+. .+
T Consensus 101 ~Si~f-L~~~G~DF~k~~~~GI~~~~F----~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l 175 (252)
T 2d5r_A 101 DSIEL-LTTSGIQFKKHEEEGIETQYF----AELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEIL 175 (252)
T ss_dssp HHHHH-HHHHTCCHHHHHHHCBCHHHH----HHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHH
T ss_pred HHHHH-HHHcCCChhHHHhcCCCHHHH----HHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 12111 1334886 4455677777753 333332 11111246899999999999987652 11
Q ss_pred hcCCCCceeehHHHHHHHHHhCCCccc-----CCCCCCCCCChHHHHHHHHHHHHHHHHHhcccC
Q 027892 155 ASLFSHVLVDVSSIKALCMRWYPRDYR-----KVPSKEQKHRALDDIRESIMELKYYKENIFKTN 214 (217)
Q Consensus 155 ~~~~~~~~iDt~~l~~la~~~~p~~~~-----~~l~~~~~H~Al~Da~at~~ll~~~~~~~~~~~ 214 (217)
...|| .++|+..+++.++.+...+.. .....+..|.|-.|+.-|..++-.+++.+|..+
T Consensus 176 ~~~FP-~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~~~ 239 (252)
T 2d5r_A 176 RLFFP-VIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 239 (252)
T ss_dssp HHHCS-CEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHCc-chhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcCCC
Confidence 23455 678886444332222111110 112457789999999999999999999988653
No 24
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.88 E-value=2.2e-05 Score=75.67 Aligned_cols=101 Identities=20% Similarity=0.131 Sum_probs=63.4
Q ss_pred cCCCCEEEEEecC-CCC---CCC----CCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHH
Q 027892 34 EYKMPLVWIDLEM-TGL---KIE----VDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKK 105 (217)
Q Consensus 34 ~~~~~~v~lD~ET-TGl---~p~----~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~ 105 (217)
+.+-++++||+|| ||. -|+ .|.||+||.+..+|... ..+++++.. ..... .+.| .
T Consensus 187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~------~~~~~~~~~-~~~~~-------~i~~---~ 249 (847)
T 1s5j_A 187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKK------VLVLNRNDV-NEGSV-------KLDG---I 249 (847)
T ss_dssp CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEE------EEEECSSCC-CCCCE-------EETT---E
T ss_pred CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcE------EEEEeCCcc-ccccc-------CCCC---C
Confidence 3567999999999 743 232 37999999863333221 124444221 00000 0011 1
Q ss_pred HHhcCCCHHHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhhhhc
Q 027892 106 VLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPDLAS 156 (217)
Q Consensus 106 ~l~~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~~~~ 156 (217)
.+..-++..+.+.+|.+|+.+. ++++|||. .||+++|...+..+|.
T Consensus 250 ~v~~~~~E~~LL~~f~~~i~~~-----diivgyN~~~FDlPyL~~Ra~~lgi 296 (847)
T 1s5j_A 250 SVERFNTEYELLGRFFDILLEY-----PIVLTFNGDDFDLPYIYFRALKLGY 296 (847)
T ss_dssp EEEEESSHHHHHHHHHHHHTTC-----SEEEESSTTTTHHHHHHHHHHTTTC
T ss_pred eEEEeCCHHHHHHHHHHHhccC-----CEEEEeCCCCchHHHHHHHHHHcCC
Confidence 1222357899999999999873 47999998 8999999887765553
No 25
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.69 E-value=0.00064 Score=58.42 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=100.6
Q ss_pred CCCCEEEEEecCCCCCCCC---------------------CcEEEEEEEEECCceee----eecCCceeecCCccchhhh
Q 027892 35 YKMPLVWIDLEMTGLKIEV---------------------DRILEIACIITDGKLTK----SVEGPDLVIHQTKECLDSM 89 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~---------------------d~IieIgav~~d~~~~~----~~~~~~~li~p~~~i~~~~ 89 (217)
...+||++|+|-+|+.... -.|||+|....+.+... ..-.|+......+..-.
T Consensus 43 ~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~-- 120 (333)
T 2p51_A 43 ERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYA-- 120 (333)
T ss_dssp TTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCC--
T ss_pred hhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccC--
Confidence 4569999999999997331 25999998876644332 11124444444332211
Q ss_pred hhHHhhhhhhcCCc-HHHHhcCCCHHHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhh-------------hhh
Q 027892 90 GEWCQNHHEASGLT-KKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMP-------------DLA 155 (217)
Q Consensus 90 ~~~~~~~h~itGIt-~~~l~~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~-------------~~~ 155 (217)
.+++.- -.-+||. +....+|.+..+..+.+.. .+.+-.....||.++..||+.+|-+-+. .+.
T Consensus 121 ~~SI~f-L~~~G~DF~k~~~~GI~~~~F~elL~~--SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~ 197 (333)
T 2p51_A 121 PESIEL-LTKSGIDFKKHQEVGIEPADFAELLIG--SGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 197 (333)
T ss_dssp HHHHHH-HHHTTCCHHHHHHHCBCHHHHHHHHHT--TTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHH
T ss_pred HHHHHH-HHHcCCChhHHHHcCCCHHHHHHHHHh--cCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 122111 1335887 4455678777754333322 1111111246889999999999877652 112
Q ss_pred cCCCCceeehHHHHHHHHHhCCCccc-----CCCCCCCCCChHHHHHHHHHHHHHHHHHhccc
Q 027892 156 SLFSHVLVDVSSIKALCMRWYPRDYR-----KVPSKEQKHRALDDIRESIMELKYYKENIFKT 213 (217)
Q Consensus 156 ~~~~~~~iDt~~l~~la~~~~p~~~~-----~~l~~~~~H~Al~Da~at~~ll~~~~~~~~~~ 213 (217)
..|| .++|+..+++.+..+...+.. .....+..|.|-.|+..|..++..+++.+|..
T Consensus 198 ~~FP-~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 198 IYFP-KNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp HHSS-SEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCc-chhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 2344 578886444322211111100 01245788999999999999999999988754
No 26
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00013 Score=70.85 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=62.2
Q ss_pred CCCCEEEEEecCCC---C--CCCCCcEEEEEEEE-ECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHh
Q 027892 35 YKMPLVWIDLEMTG---L--KIEVDRILEIACII-TDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLH 108 (217)
Q Consensus 35 ~~~~~v~lD~ETTG---l--~p~~d~IieIgav~-~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~ 108 (217)
.+-++++||+||++ . +|..|+||+|++++ .+|....... ....+.+..++ .| ..+.
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r-~~f~l~~~~~~--------------~~---~~V~ 308 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIR-NVFTLNTCSPI--------------TG---SMIF 308 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEE-EEEEESCCCCB--------------TT---BEEE
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCccccee-EEEEecCCCCC--------------CC---CeEE
Confidence 45689999999985 2 45679999999874 3443221100 00112221111 01 1223
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhh
Q 027892 109 SGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD 153 (217)
Q Consensus 109 ~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~ 153 (217)
.-++..+.+..|.+|+..+- +.+++|||+ .||+++|.+-+..
T Consensus 309 ~~~sE~eLL~~F~~~i~~~D---PDIIvGyNi~~FDlpyL~~Ra~~ 351 (919)
T 3iay_A 309 SHATEEEMLSNWRNFIIKVD---PDVIIGYNTTNFDIPYLLNRAKA 351 (919)
T ss_dssp EESSHHHHHHHHHHHHHHHC---CSEEEESSTTTTHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHhC---CCEEEecCCccCCHHHHHHHHHH
Confidence 34578999999999998752 246899999 8999999765533
No 27
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.49 E-value=0.00047 Score=60.66 Aligned_cols=112 Identities=9% Similarity=-0.020 Sum_probs=61.4
Q ss_pred CCCCEEEEEecCCC---CCCC--CCcEEEEEEEEECCceeeeecCCceeecCCc-cc-hhhhhhHHhhh-hhhcCCcHH-
Q 027892 35 YKMPLVWIDLEMTG---LKIE--VDRILEIACIITDGKLTKSVEGPDLVIHQTK-EC-LDSMGEWCQNH-HEASGLTKK- 105 (217)
Q Consensus 35 ~~~~~v~lD~ETTG---l~p~--~d~IieIgav~~d~~~~~~~~~~~~li~p~~-~i-~~~~~~~~~~~-h~itGIt~~- 105 (217)
.+-+++++|+||+| .+|. .++|+.|+++...+..... | .+++++. .. +.........+ -.++.-.+.
T Consensus 104 p~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~---~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (388)
T 1noy_A 104 KFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYV---F-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEI 179 (388)
T ss_dssp GGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEE---E-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred CCeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEE---E-EEeeccCCCCCcccccccccccccccccccccc
Confidence 46789999999998 1232 4699999986443332110 1 1233211 10 00000000000 000000111
Q ss_pred --H--HhcCCCHHHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhh
Q 027892 106 --V--LHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD 153 (217)
Q Consensus 106 --~--l~~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~ 153 (217)
. +...++..+.+..|.+++...- +.+++|||+ .||+++|.+-+..
T Consensus 180 ~~~v~v~~~~~E~~LL~~f~~~i~~~d---PDii~GyN~~~FDlpyL~~Ra~~ 229 (388)
T 1noy_A 180 LDRVIYMPFDNERDMLMEYINLWEQKR---PAIFTGWNIEGFDVPYIMNRVKM 229 (388)
T ss_dssp HTTEEEEEESCHHHHHHHHHHHHHHSC---CSEEECSSTTTTHHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhC---CcEEEecCCCCccHHHHHHHHHH
Confidence 0 1234678999999999998742 247999998 8999999765543
No 28
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.48 E-value=0.00017 Score=66.27 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=78.5
Q ss_pred cCCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCH
Q 027892 34 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE 113 (217)
Q Consensus 34 ~~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~ 113 (217)
+.+...+++|+|+.|+++..++++-|+.- .++.. + ++.
T Consensus 7 ~~~p~~valDtE~~~~~~~~a~Lvgi~la-~~~~a------~--~i~--------------------------------- 44 (540)
T 4dfk_A 7 WPPPEGAFVGFVLSRKEPMWADLLALAAA-RGGRV------H--RAP--------------------------------- 44 (540)
T ss_dssp SCCCTTCEEEEEESSSCTTTCCEEEEEEE-ETTEE------E--ECS---------------------------------
T ss_pred CCCCCceEEEEEecCCccCcccEEEEEEE-cCCEE------E--Eeh---------------------------------
Confidence 44557799999999999988887665543 22211 1 110
Q ss_pred HHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCCC-------CC
Q 027892 114 REAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVP-------SK 186 (217)
Q Consensus 114 ~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~l-------~~ 186 (217)
+++..|.+|+++ ...|+||+.||+. +.|..+. ..+||. -+++.+.|. .+++ ..
T Consensus 45 -~~l~~l~~~l~d------~~kV~hn~K~Dl~-------~~Gi~~~-~~fDT~---laAyLL~p~--~~~L~~La~~yl~ 104 (540)
T 4dfk_A 45 -EPYKALRDLKEA------RGLLAKDLSVLAL-------REGLGLP-PGDDPM---LLAYLLDPS--NTTPEGVARRYGG 104 (540)
T ss_dssp -SHHHHHTTCSSB------CSTTHHHHHHHHH-------HTTCCCC-BCCCHH---HHHHHHCTT--CCCHHHHHHHHTS
T ss_pred -hhHHHHHHHHcC------CCEEEeccHHHHH-------HcCCCCC-cceeHH---HHHHHhCCC--CCCHHHHHHHHhh
Confidence 144567777776 2478999999998 4465556 788996 455666776 3321 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHh
Q 027892 187 EQKHRALDDIRESIMELKYYKENI 210 (217)
Q Consensus 187 ~~~H~Al~Da~at~~ll~~~~~~~ 210 (217)
.-.|+|..||.+|.+|+..+.+.+
T Consensus 105 ~~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 105 EWTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhccchHHHHHHHHHHHHHHHHHH
Confidence 145789999999999999998877
No 29
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.19 E-value=0.0071 Score=51.07 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=98.8
Q ss_pred CCCCEEEEEecCCCCCCC---------------------CCcEEEEEEEEECCceee-----eecCCceeecCCccchhh
Q 027892 35 YKMPLVWIDLEMTGLKIE---------------------VDRILEIACIITDGKLTK-----SVEGPDLVIHQTKECLDS 88 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~---------------------~d~IieIgav~~d~~~~~-----~~~~~~~li~p~~~i~~~ 88 (217)
...+||++|+|-+|+... .-.|||+|....+.+... ..-.|+......+..-.
T Consensus 36 ~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~- 114 (289)
T 1uoc_A 36 SQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMS- 114 (289)
T ss_dssp TTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCC-
T ss_pred hhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcccccc-
Confidence 457999999999999622 235999999876544321 11124444444332211
Q ss_pred hhhHHhhhhhhcCCc-HHHHhcCCCHHHHHHHHHHHHhhc--cCCCCceEEEecHHHhHHHHHhHhhh------------
Q 027892 89 MGEWCQNHHEASGLT-KKVLHSGLTEREAEKQVVEFVKKN--VGTYTPLLAGNSVYVDFMFLKKYMPD------------ 153 (217)
Q Consensus 89 ~~~~~~~~h~itGIt-~~~l~~~~~~~e~~~~~~~~l~~~--~~~~~~~lVghn~~FD~~fL~~~~~~------------ 153 (217)
.+++.- -.-+||. +....+|.+..+ |.+.+-.. +-.....+|.++..||+.+|-+.+..
T Consensus 115 -~~SI~f-L~~~G~DF~k~~~~GI~~~~----F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~ 188 (289)
T 1uoc_A 115 -TESLEL-LRKSGINFEKHENLGIDVFE----FSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEW 188 (289)
T ss_dssp -HHHHHH-HHHTTCCHHHHHHHCBCHHH----HHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHH
T ss_pred -HHHHHH-HHHcCCChhHHHHcCCCHHH----HHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHH
Confidence 122211 1345887 445567877764 33434321 11112468999999999999876521
Q ss_pred -hhcCCCCceeehHHHHHHHHHhCCC---------------ccc----CC-CCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 154 -LASLFSHVLVDVSSIKALCMRWYPR---------------DYR----KV-PSKEQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 154 -~~~~~~~~~iDt~~l~~la~~~~p~---------------~~~----~~-l~~~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
+...|| .++|+..+++.++.+... +.. -+ ...+..|.|=.|+.-|..++-.+++.+|
T Consensus 189 ~l~~~FP-~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~ 266 (289)
T 1uoc_A 189 WVHQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSM 266 (289)
T ss_dssp HHHHHCS-SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCc-cceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 123455 588998666655433221 000 01 2356689999999999999999998876
No 30
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=96.95 E-value=0.0023 Score=63.80 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=61.9
Q ss_pred cCCCCEEEEEecCCCC------CC----CCCcEEEEEEEEEC-CceeeeecCCceeecCCc-cchhhhhhHHhhhhhhcC
Q 027892 34 EYKMPLVWIDLEMTGL------KI----EVDRILEIACIITD-GKLTKSVEGPDLVIHQTK-ECLDSMGEWCQNHHEASG 101 (217)
Q Consensus 34 ~~~~~~v~lD~ETTGl------~p----~~d~IieIgav~~d-~~~~~~~~~~~~li~p~~-~i~~~~~~~~~~~h~itG 101 (217)
+.+-++++||+||++. -| ..|.||+|++++.. +.... .. ..++.... ..+........ -.|
T Consensus 317 ~P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~-~~--~~v~~l~~~~~~~~f~~~~k----~~~ 389 (1193)
T 2gv9_A 317 LPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL-EH--VLLFSLGSCDLPESHLNELA----ARG 389 (1193)
T ss_dssp CCCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE-EE--EEEEEESCCCCCHHHHHHHH----HTT
T ss_pred CCCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc-ce--EEEEECCCcCCcchhhhhcc----ccc
Confidence 4567899999999864 12 25899999987542 21111 00 11111111 11111111111 112
Q ss_pred CcHHHHhcCCCHHHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHh
Q 027892 102 LTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYM 151 (217)
Q Consensus 102 It~~~l~~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~ 151 (217)
+....+..-.+..+.+..|++++..+- +-+|+|||+ .||+++|..-+
T Consensus 390 ~~~~~V~~~~sE~eLL~~F~~~I~~~D---PDIIvGyNi~~FDlpyL~~Ra 437 (1193)
T 2gv9_A 390 LPTPVVLEFDSEFEMLLAFMTLVKQYG---PEFVTGYNIINFDWPFLLAKL 437 (1193)
T ss_dssp CCCCEEEEESSHHHHHHHHHHHHHHHC---CSEEEESSTTTTHHHHHHHHH
T ss_pred CCCceEEecCCHHHHHHHHHHHHHhcC---CCEEEEcCCcCccHHHHHHHH
Confidence 111113334578999999999999852 247999998 89999997653
No 31
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=95.99 E-value=0.035 Score=51.43 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=77.0
Q ss_pred CEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHHHH
Q 027892 38 PLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAE 117 (217)
Q Consensus 38 ~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e~~ 117 (217)
.-.++|+|++|+++..++++-|+... ++. . .+|.+ . . .+++
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~-~~~--a------~yIp~--------~-------~---------------~~~l 70 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVN-EHG--R------FFLRP--------E-------T---------------ALAD 70 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEE-TTE--E------EEECH--------H-------H---------------HTTC
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEc-CCc--e------EEEcc--------c-------h---------------hhHH
Confidence 44689999999999888876665422 221 1 23321 0 0 1133
Q ss_pred HHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCC------------CC
Q 027892 118 KQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKV------------PS 185 (217)
Q Consensus 118 ~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~------------l~ 185 (217)
..|..|+.+. ....|+||+.||+.+|.+ .|..++...+||.. .++-+.|....++ +.
T Consensus 71 ~~Lk~lLed~----~i~KV~hn~K~Dl~vL~~----~Gi~l~g~~fDTmL---AAYLL~p~~~~~~L~~La~~yLg~~l~ 139 (592)
T 3pv8_A 71 PQFVAWLGDE----TKKKSMFDSKRAAVALKW----KGIELCGVSFDLLL---AAYLLDPAQGVDDVAAAAKMKQYEAVR 139 (592)
T ss_dssp HHHHHHHTCT----TSEEEESSHHHHHHHHHH----TTCCCCCEEEEHHH---HHHHHCGGGCCCSHHHHHGGGTCCSSC
T ss_pred HHHHHHHhCC----CCeEEEechHHHHHHHHH----cCCCCCCccchHHH---HHHHcCCCCCCCCHHHHHHHHcCCCCc
Confidence 4577788762 135899999999999975 46556667889962 3333444332111 00
Q ss_pred -----------------CCCCCChHHHHHHHHHHHHHHHHHhcc
Q 027892 186 -----------------KEQKHRALDDIRESIMELKYYKENIFK 212 (217)
Q Consensus 186 -----------------~~~~H~Al~Da~at~~ll~~~~~~~~~ 212 (217)
....+-|..||.++.+|+..+.+.+-.
T Consensus 140 ~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e 183 (592)
T 3pv8_A 140 PDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR 183 (592)
T ss_dssp CHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001234678999999999888877644
No 32
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=95.93 E-value=0.012 Score=54.40 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=47.7
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHH
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTER 114 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~ 114 (217)
+...++++|+||+. ++.++.+.-+|.. ++.... .|. |. ..
T Consensus 4 ~~~~i~~~D~Et~~-d~~~~~~~~i~~~--~~~~~~---~~~------------------------~~--------~~-- 43 (575)
T 2py5_A 4 MPRKMYSCAFETTT-KVEDCRVWAYGYM--NIEDHS---EYK------------------------IG--------NS-- 43 (575)
T ss_dssp -CCCEEEEEEEECC-BTTBCCEEEEEEE--ESSCTT---CEE------------------------EE--------SC--
T ss_pred ccceEEEEEEEeec-CCCCCceEEEEEE--eCCceE---EEE------------------------ec--------hh--
Confidence 45679999999985 7777888888862 322110 010 00 01
Q ss_pred HHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhh
Q 027892 115 EAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDL 154 (217)
Q Consensus 115 e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~ 154 (217)
+.+|++|+..+ .+.+++||+.||..||.+.+...
T Consensus 44 --l~~fi~~~~~~----~~~i~~hNl~FD~~~l~~~~~~~ 77 (575)
T 2py5_A 44 --LDEFMAWVLKV----QADLYFHNLKFAGAFIINWLERN 77 (575)
T ss_dssp --HHHHHHHHHHH----CCEEEETTHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHc----CCEEEEEChhhhHHHHHHHHHHh
Confidence 24566777654 25688899999999999887443
No 33
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.85 E-value=0.034 Score=53.17 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=56.7
Q ss_pred cCCCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCH
Q 027892 34 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTE 113 (217)
Q Consensus 34 ~~~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~ 113 (217)
+.+-++++||+|+.+ ...|++||.- +.....+ ..+.+...- . ...|. .+..-++.
T Consensus 150 ~p~lrilsfDIE~~~----~g~i~~I~~~--~~~~~~v-----~~l~~~~~~----~-------~~~~~---~V~~f~~E 204 (786)
T 3k59_A 150 RPPLKWVSIDIETTR----HGELYCIGLE--GCGQRIV-----YMLGPENGD----A-------SSLDF---ELEYVASR 204 (786)
T ss_dssp CCCCCEEEEEEEECT----TSCEEEEEEE--ETTEEEE-----EEESSCCSC----C-------TTCSS---EEEEESSH
T ss_pred CCCCeEEEEEEEEcC----CCCEEEEEec--CCCCCeE-----EEEecCCCC----C-------CCCCc---eEEEeCCH
Confidence 567899999999994 2479999842 2221111 123222100 0 00011 11222468
Q ss_pred HHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhhh
Q 027892 114 REAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMPD 153 (217)
Q Consensus 114 ~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~~ 153 (217)
.+.+..|.+|+..+- | -+++|||. .||+++|.+-+..
T Consensus 205 ~~lL~~f~~~i~~~d-P--Dii~g~N~~~FD~pyL~~Ra~~ 242 (786)
T 3k59_A 205 PQLLEKLNAWFANYD-P--DVIIGWNVVQFDLRMLQKHAER 242 (786)
T ss_dssp HHHHHHHHHHHHHHC-C--SEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-C--CEEEecCCccCcHHHHHHHHHH
Confidence 889999999999852 2 36899998 7999999876543
No 34
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=95.32 E-value=0.066 Score=51.88 Aligned_cols=106 Identities=14% Similarity=0.188 Sum_probs=61.5
Q ss_pred CCCEEEEEecCCCC----CCC--CCcEEEEEEEEECCceeeeecCCceeec-CCccchhhhhhHHhh------hhhhcCC
Q 027892 36 KMPLVWIDLEMTGL----KIE--VDRILEIACIITDGKLTKSVEGPDLVIH-QTKECLDSMGEWCQN------HHEASGL 102 (217)
Q Consensus 36 ~~~~v~lD~ETTGl----~p~--~d~IieIgav~~d~~~~~~~~~~~~li~-p~~~i~~~~~~~~~~------~h~itGI 102 (217)
..+.+.+|+|++.- +|. .++|+.|+..--++....+. . +++ |..... +|... ...-..+
T Consensus 107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~---~-l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 178 (903)
T 3qex_A 107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVF---D-LLNSPYGNVE----EWSIEIAAKLQEQGGDEV 178 (903)
T ss_dssp GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEE---E-ECEETTEECC----CCCHHHHHSCGGGTCCCC
T ss_pred cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEE---E-eecccccccc----cccccccccccccccccc
Confidence 47899999999852 222 68999999863333322211 0 223 211110 01000 0011123
Q ss_pred cHHHHhc-----CCCHHHHHHHHHHHHhhccCCCCceEEEecH-HHhHHHHHhHhh
Q 027892 103 TKKVLHS-----GLTEREAEKQVVEFVKKNVGTYTPLLAGNSV-YVDFMFLKKYMP 152 (217)
Q Consensus 103 t~~~l~~-----~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~-~FD~~fL~~~~~ 152 (217)
..+.+.+ -++..+.+.+|.+|+..+- +.+|+|||+ .||+++|.+-+.
T Consensus 179 ~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~D---PDIItGyN~~~FDlPYL~~RA~ 231 (903)
T 3qex_A 179 PSEIIDKIIYMPFDNEKELLMEYLNFWQQKT---PVILTGWNVESFAIPYVYNRIK 231 (903)
T ss_dssp CHHHHTTEEEEEESSHHHHHHHHHHHHHHTC---CSEEECSSTTTTHHHHHHHHHH
T ss_pred ccccCCCeEEEEcCCHHHHHHHHHHHHHHhC---CCEEEecCCccCCHHHHHHHHH
Confidence 3443332 2578899999999998752 347899998 899999966543
No 35
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=95.31 E-value=0.15 Score=45.29 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=71.1
Q ss_pred CCCEEEEEecCCCCCCCCCcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHH
Q 027892 36 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTERE 115 (217)
Q Consensus 36 ~~~~v~lD~ETTGl~p~~d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e 115 (217)
....++||+|++++++...++.=|. +..+.. ..+|.|-. +. +
T Consensus 128 ~~~~vavDtE~~~~~~~~~~l~lIQ--La~~~~-------~~lidpl~------------------l~-----------~ 169 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFLGLTCLMQ--ISTRTE-------DFIIDTLE------------------LR-----------S 169 (428)
T ss_dssp TCSEEEEEEEEECTTCSSCEEEEEE--EECSSC-------EEEEETTT------------------TG-----------G
T ss_pred cCCeEEEEEEecCCCCCCCeEEEEE--EEeCCc-------EEEEEecc------------------ch-----------h
Confidence 3578999999999887766532222 222221 13444321 10 0
Q ss_pred HHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCccc----------CCC-
Q 027892 116 AEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR----------KVP- 184 (217)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~----------~~l- 184 (217)
.+..|..++.+. ..+-||||+.+|+..|.+.+ |... ..++||... ++.+.+.... ..+
T Consensus 170 ~l~~L~~lL~dp----~i~KV~H~~k~Dl~~L~~~~---Gi~~-~~~fDT~lA---a~lL~~~~~gL~~Lv~~~Lg~~l~ 238 (428)
T 3saf_A 170 DMYILNESLTDP----AIVKVFHGADSDIEWLQKDF---GLYV-VNMFDTHQA---ARLLNLGRHSLDHLLKLYCNVDSN 238 (428)
T ss_dssp GGGGGHHHHTCT----TSEEEESSCHHHHHHHHHHH---CCCC-SSEEEHHHH---HHHTTCSCCSHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHcCC----CceEEEeehHHHHHHHHHHc---CCCc-CceeechhH---HHHhCCCCCCHHHHHHHHcCCCCC
Confidence 122355567662 13469999999999997533 4332 347898632 2222222100 001
Q ss_pred -------------CCCCCCChHHHHHHHHHHHHHHHHHhcc
Q 027892 185 -------------SKEQKHRALDDIRESIMELKYYKENIFK 212 (217)
Q Consensus 185 -------------~~~~~H~Al~Da~at~~ll~~~~~~~~~ 212 (217)
.....+-|..||.++.+|+..+++.+..
T Consensus 239 K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 239 KQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111234678999999999988877643
No 36
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.36 E-value=0.46 Score=43.03 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=47.0
Q ss_pred ceEEEecHHHhHHHHHhHhh------------hhhcCCCCceeehHHHHHH--HHHhCCC--c-------c---------
Q 027892 133 PLLAGNSVYVDFMFLKKYMP------------DLASLFSHVLVDVSSIKAL--CMRWYPR--D-------Y--------- 180 (217)
Q Consensus 133 ~~lVghn~~FD~~fL~~~~~------------~~~~~~~~~~iDt~~l~~l--a~~~~p~--~-------~--------- 180 (217)
.+|||||.-+|+-+|-+.|- .+...|| .++||..|+.. .....+. + .
T Consensus 277 kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i 355 (507)
T 3d45_A 277 KLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKV 355 (507)
T ss_dssp CEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCS-CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCE
T ss_pred CeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC-ceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeE
Confidence 46999999999999988751 1122345 38899754321 1111110 0 0
Q ss_pred -------cCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 181 -------RKVPSKEQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 181 -------~~~l~~~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
.|....+..|.|-.||..|..++-.+...+.
T Consensus 356 ~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 356 ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp EECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 0111245689999999999998877766553
No 37
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=92.31 E-value=1.1 Score=39.63 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=45.3
Q ss_pred ceEEEecHHHhHHHHHhHhh------------hhhcCCCCceeehHHHHHHH---------------HHhC------CCc
Q 027892 133 PLLAGNSVYVDFMFLKKYMP------------DLASLFSHVLVDVSSIKALC---------------MRWY------PRD 179 (217)
Q Consensus 133 ~~lVghn~~FD~~fL~~~~~------------~~~~~~~~~~iDt~~l~~la---------------~~~~------p~~ 179 (217)
.+|||||.-+|+-++-+.|- .+...|| .++||..|.... ..+. |..
T Consensus 282 KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i 360 (430)
T 2a1r_A 282 KLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV 360 (430)
T ss_dssp CEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCS-SEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCE
T ss_pred CceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCC-ceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCee
Confidence 35899999999998887651 1122345 489996443110 0000 000
Q ss_pred ------ccCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 027892 180 ------YRKVPSKEQKHRALDDIRESIMELKYYKENI 210 (217)
Q Consensus 180 ------~~~~l~~~~~H~Al~Da~at~~ll~~~~~~~ 210 (217)
..+.......|.|-.||..|..++-.+...+
T Consensus 361 ~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 361 ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp EECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 0011124667999999999999887776665
No 38
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=87.67 E-value=1.8 Score=33.81 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeeh
Q 027892 119 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDV 165 (217)
Q Consensus 119 ~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt 165 (217)
.+..++.+. ....||||+.+|+..|.+.+ |..... .+|+
T Consensus 87 ~L~~lL~d~----~i~Kv~~~~k~D~~~L~~~~---gi~~~~-~fDl 125 (208)
T 2e6m_A 87 GLKMLLENK----SIKKAGVGIEGDQWKLLRDF---DVKLES-FVEL 125 (208)
T ss_dssp HHHHHHTCT----TSEEEESSHHHHHHHHHHHH---CCCCCS-EEEH
T ss_pred HHHHHhcCC----CceEEEEeeHHHHHHHHHHC---CCCCCC-EEEH
Confidence 466677762 14579999999999998643 443444 7883
No 39
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=84.50 E-value=0.093 Score=51.35 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=25.4
Q ss_pred eEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHH
Q 027892 134 LLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIK 169 (217)
Q Consensus 134 ~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~ 169 (217)
+|||||++||+..+..++.- ..-..+++||++|.
T Consensus 196 lIVGHNVsyDRARI~EeY~l--~~sk~rFlDTMSLH 229 (1172)
T 3ikm_A 196 LVVGHNVSFDRAHIREQYLI--QGSRMRFLDTMSMH 229 (1172)
T ss_dssp CCBCBCSSSSTTGGGTSSCS--SCCCCCCCBTTHHH
T ss_pred EEEeCCcchhHHHHHHHHhc--ccCCceeeechhhh
Confidence 58999999999988876521 12245799998874
No 40
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=80.93 E-value=12 Score=32.01 Aligned_cols=84 Identities=11% Similarity=-0.088 Sum_probs=49.4
Q ss_pred HHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCccc--------C-CCC--C
Q 027892 118 KQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR--------K-VPS--K 186 (217)
Q Consensus 118 ~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~--------~-~l~--~ 186 (217)
..|.+++.+. ..+.||||+.+|+..|.+.+ |.... .++||.. .++.+.+.... + +.. .
T Consensus 64 ~~L~~ll~d~----~i~Kv~h~~k~Dl~~L~~~~---Gi~~~-~~fDt~l---Aa~lL~~~~~~~L~~L~~~~l~~~l~K 132 (375)
T 1yt3_A 64 SPLKAILRDP----SITKFLHAGSEDLEVFLNVF---GELPQ-PLIDTQI---LAAFCGRPMSWGFASMVEEYSGVTLDK 132 (375)
T ss_dssp HHHHHHHHCT----TSEEEESSCHHHHHHHHHHH---SSCCS-SEEEHHH---HHHHTTCCTTCCHHHHHHHHHCCCCCC
T ss_pred HHHHHHHcCC----CceEEEeeHHHHHHHHHHHc---CCCCC-cEEEcHH---HHHHcCCCCChhHHHHHHHHcCCCCCC
Confidence 3466778762 13579999999999998632 43333 6789862 23333332100 0 111 0
Q ss_pred --------------CCCCChHHHHHHHHHHHHHHHHHhcc
Q 027892 187 --------------EQKHRALDDIRESIMELKYYKENIFK 212 (217)
Q Consensus 187 --------------~~~H~Al~Da~at~~ll~~~~~~~~~ 212 (217)
...+-|..||.++.+++..+++.+-.
T Consensus 133 ~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp TTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112567999999999888877643
No 41
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=70.21 E-value=16 Score=31.75 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=48.3
Q ss_pred HHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCccc-------C-C--CCC--
Q 027892 119 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYR-------K-V--PSK-- 186 (217)
Q Consensus 119 ~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~-------~-~--l~~-- 186 (217)
.|..++.+. ..+.||||+.+|+..|.+.+ |..... ++||.. .++.+.+.... + + +..
T Consensus 150 ~L~~lL~d~----~i~KV~h~~k~Dl~~L~~~~---Gi~~~~-~fDt~l---Aa~LL~~~~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 150 ILNEVFTNP----SIVKVFHGAFMDIIWLQRDL---GLYVVG-LFDTYH---ASKAIGLPRHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp GGHHHHTCT----TSEEEESSCHHHHHHHHHHH---CCCCSS-EEEHHH---HHHHHTCSCCSHHHHHHHHSCCCCCCTT
T ss_pred HHHHHHcCC----CceEEEEehHHHHHHHHHHc---CCCcCC-EEEcHH---HHHHhCCCccCHHHHHHHHcCCCCCccc
Confidence 356677662 13579999999999998643 443333 889863 22333332100 0 1 000
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 187 ------------EQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 187 ------------~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
...+-|..||.++.+|+..+++.+-
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112267899999999888877654
No 42
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=54.43 E-value=22 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHH
Q 027892 119 QVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSI 168 (217)
Q Consensus 119 ~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l 168 (217)
.|.+++.+. ..+.|||++++|+..|++.+ |. .+.+++|+..+
T Consensus 99 ~L~~lL~d~----~i~Kvg~~~~~D~~~L~~~~---g~-~~~~~~Dl~~l 140 (206)
T 1vk0_A 99 DLYRFFASK----FVTFVGVQIEEDLDLLRENH---GL-VIRNAINVGKL 140 (206)
T ss_dssp HHHHHHTCS----SSEEEESSCHHHHHHHHHHH---CC-CCSSEEEHHHH
T ss_pred HHHHHhcCC----CceEEEeccHHHHHHHHHhc---CC-CcCCeeeHHHH
Confidence 366778762 24679999999999998754 32 24568998633
No 43
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=53.67 E-value=77 Score=27.71 Aligned_cols=78 Identities=13% Similarity=-0.033 Sum_probs=46.9
Q ss_pred HHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhCCCcccCC--------------
Q 027892 118 KQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKV-------------- 183 (217)
Q Consensus 118 ~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~p~~~~~~-------------- 183 (217)
..|..++.+ +..|+|++.+|+..|+ .+|.... ..+||.. .++.+.+. .++
T Consensus 85 ~~L~~lL~d------~~KV~h~~k~Dl~~L~----~~gi~~~-~~fDt~l---Aa~lL~~~--~~gL~~L~~~~lg~~~~ 148 (440)
T 3cym_A 85 NDFNRAVGD------AVWILHDSLQDLPGFD----ELGMEPQ-RLFDTEI---AARLLGLK--RFGLAAVTEHFLGLTLA 148 (440)
T ss_dssp HHHHHHHTT------CEEEESSHHHHHHHHH----HHTCCCC-EEEEHHH---HHHHTTCS--SCSHHHHHHHHHCEECC
T ss_pred HHHHHHHCC------CCEEEEcCHHHHHHHH----HcCCcCC-ceehHHH---HHHHhCCC--CCCHHHHHHHHhCCCcc
Confidence 446777776 2479999999999886 2344333 6889842 22222332 110
Q ss_pred ----C---CC-----CCCCChHHHHHHHHHHHHHHHHHhc
Q 027892 184 ----P---SK-----EQKHRALDDIRESIMELKYYKENIF 211 (217)
Q Consensus 184 ----l---~~-----~~~H~Al~Da~at~~ll~~~~~~~~ 211 (217)
. .. ..-.-|..||.++.+|+..+.+.+.
T Consensus 149 K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~ 188 (440)
T 3cym_A 149 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELK 188 (440)
T ss_dssp CCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 1112277899999999888876654
No 44
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=51.79 E-value=13 Score=32.68 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=30.0
Q ss_pred CCCCEEEEEecCCCCCCC-------------------------CCcEEEEEEEEEC--Ccee-eeecCCceeecC
Q 027892 35 YKMPLVWIDLEMTGLKIE-------------------------VDRILEIACIITD--GKLT-KSVEGPDLVIHQ 81 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~-------------------------~d~IieIgav~~d--~~~~-~~~~~~~~li~p 81 (217)
...+||++|+|-||+... .-.|||+|....+ ++.. .....|++++-|
T Consensus 20 ~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP 94 (430)
T 2a1r_A 20 EEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFP 94 (430)
T ss_dssp HHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCC
T ss_pred hcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEecc
Confidence 346899999999999532 1359999988543 3221 112346666554
No 45
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=21.89 E-value=1.3e+02 Score=22.90 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=23.1
Q ss_pred cCCCHHHHHHHHHHHHhhcc---CCCCceEEEecHHH
Q 027892 109 SGLTEREAEKQVVEFVKKNV---GTYTPLLAGNSVYV 142 (217)
Q Consensus 109 ~~~~~~e~~~~~~~~l~~~~---~~~~~~lVghn~~F 142 (217)
++.++.++..++..++.... +.+..++|+|+.-.
T Consensus 120 ~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~~i 156 (208)
T 2a6p_A 120 AGESVAQVNDRADSAVALALEHMSSRDVLFVSHGHFS 156 (208)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCHHHH
Confidence 45678999888888876532 22346788998543
No 46
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=21.14 E-value=85 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.4
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCceEEEecH
Q 027892 109 SGLTEREAEKQVVEFVKKNVGTYTPLLAGNSV 140 (217)
Q Consensus 109 ~~~~~~e~~~~~~~~l~~~~~~~~~~lVghn~ 140 (217)
++.++.++..++..++... . +..++|+|+.
T Consensus 106 ~gEs~~~~~~R~~~~l~~l-~-~~vlvVsHg~ 135 (177)
T 1v37_A 106 GGESLSAFQERVFRFLEGL-K-APAVLFTHGG 135 (177)
T ss_dssp TSCCHHHHHHHHHHHHHHC-C-SCEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHc-C-CCEEEEcCHH
Confidence 4568999999999999874 3 4567899984
No 47
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=20.89 E-value=39 Score=30.28 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=30.7
Q ss_pred CCCCEEEEEecCCCCCCC-------------------------CCcEEEEEEEEE--CCceee-eecCCceeecCC
Q 027892 35 YKMPLVWIDLEMTGLKIE-------------------------VDRILEIACIIT--DGKLTK-SVEGPDLVIHQT 82 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~-------------------------~d~IieIgav~~--d~~~~~-~~~~~~~li~p~ 82 (217)
...+||++|+|-||+... .-.|||+|.... +++... ....|+.++-|.
T Consensus 22 ~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~~~~~~~~fNf~~fp~ 97 (507)
T 3d45_A 22 EEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK 97 (507)
T ss_dssp HHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSSSCEEEEEEEEEBCCC
T ss_pred hcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCCCceeEEeEEEEecCc
Confidence 346899999999999632 125999998854 333211 123467776653
No 48
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=20.68 E-value=2.9e+02 Score=21.94 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=69.8
Q ss_pred CCCCEEEEEecCCCCCCCCCcEEEEEEEE-ECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcC-CC
Q 027892 35 YKMPLVWIDLEMTGLKIEVDRILEIACII-TDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSG-LT 112 (217)
Q Consensus 35 ~~~~~v~lD~ETTGl~p~~d~IieIgav~-~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~-~~ 112 (217)
-+..-.|+|+|-.--|| +|||.-- ..|+- .+++=+|...- .|-.....-+||.-.++.++ |.
T Consensus 55 dP~~ttWiDIEG~p~DP-----VElAiyQP~sg~Y------IHcyR~P~D~K-----~FK~~SKySHGillkDl~~aqPG 118 (243)
T 3q7c_A 55 DPNAKTWMDIEGRPEDP-----VEIALYQPSSGCY------IHFFREPTDLK-----QFKQDAKYSHGIDVTDLFATQPG 118 (243)
T ss_dssp CTTSCCEEEEESCTTSC-----SEEEEEETTTTEE------EEEECCCSCHH-----HHHHHHHHTTCBCGGGGTTBCTT
T ss_pred CCCCCeEEecCCCCCCC-----eEEEEeccCCCcE------EEEecCCcchh-----hhcccCccccceehhhhhhcCCc
Confidence 45566789999986665 7998642 22221 34555565421 12111113459988888765 43
Q ss_pred HHHHHHHHHHHHhhccCCCCceEEEecHHHhHHHHHhHhhhhhcCCCCceeehHHHHHHHHHhC-------CCccc----
Q 027892 113 EREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWY-------PRDYR---- 181 (217)
Q Consensus 113 ~~e~~~~~~~~l~~~~~~~~~~lVghn~~FD~~fL~~~~~~~~~~~~~~~iDt~~l~~la~~~~-------p~~~~---- 181 (217)
+ ...+++.| |++ -++-+.. +=|++-|-. -.|. -...+||+..-.+-+|.+- ..+..
T Consensus 119 L---~S~vi~~L----P~n-MVlT~QG-sDDIrkLld---~hGR-rDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~G 185 (243)
T 3q7c_A 119 L---TSAVIDAL----PRN-MVITCQG-SDDIRKLLE---SQGR-KDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTG 185 (243)
T ss_dssp H---HHHHHHHS----CTT-CEEEESS-HHHHHHHHH---HTTC-TTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCS
T ss_pred h---HHHHHHhC----CcC-cEEEeeC-hHHHHHHHH---hcCC-ccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3 23344444 333 3566655 445443322 1121 2345788752223343221 11111
Q ss_pred -------CC-CCCCCCCChHHHHHHHH
Q 027892 182 -------KV-PSKEQKHRALDDIRESI 200 (217)
Q Consensus 182 -------~~-l~~~~~H~Al~Da~at~ 200 (217)
.+ .+....|-||=||.+--
T Consensus 186 vVv~KKKkg~~~s~~PHCALLDCIMF~ 212 (243)
T 3q7c_A 186 VVVEKKKRGGKEEITPHCALMDCIMFD 212 (243)
T ss_dssp CEECCCSSSSCCEECCCCHHHHHHHHH
T ss_pred eEEeccccCCCCCCCchHHHHHHHHHH
Confidence 11 23478999999998643
No 49
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=20.39 E-value=49 Score=22.23 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=32.3
Q ss_pred CcEEEEEEEEECCceeeeecCCceeecCCccchhhhhhHHhhhhhhcCCcHHHHhcCCCHHHHHHHHHHHHhhc
Q 027892 54 DRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKN 127 (217)
Q Consensus 54 d~IieIgav~~d~~~~~~~~~~~~li~p~~~i~~~~~~~~~~~h~itGIt~~~l~~~~~~~e~~~~~~~~l~~~ 127 (217)
.-++||-|+.-+++.. |+.-|+.....-. + -|||+++-.+-.-+.+.++..-+||..+
T Consensus 34 rivlQiNAvP~g~~ir-----~SMTiHs~nNfkK-------Q----IGiTa~DA~dL~lIa~FLeKYS~~LnkY 91 (97)
T 2x5h_A 34 RIVVQLNAVPQDGKIR-----YSMTIHSQNNFRK-------Q----IGITPQDAEDLKLIAEFLEKYSDFLNEY 91 (97)
T ss_dssp SEEEEEEEEEETTEEE-----EEEEEEETTEEEE-------E----EEECGGGHHHHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEeeccCCCCeeE-----EEEEEecccchhh-------h----cCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999987777654 3445555433211 1 1888766544334455555555555543
Done!