BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027893
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJZ6|MED18_ARATH Mediator of RNA polymerase II transcription subunit 18
OS=Arabidopsis thaliana GN=MED18 PE=1 SV=1
Length = 219
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/217 (83%), Positives = 207/217 (95%)
Query: 1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CL++ PNLG V+SEVRLLCDL+Q
Sbjct: 3 MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62
Query: 61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
PEPTWTVKH+GGAMRGAGA+QISVLVR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct: 63 PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122
Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+SENY+EVA+AVSSFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182
Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
+LAPL+HLSKP +STGVVPTAAAAA SLMSDGGGTTL
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219
>sp|Q7T3H7|MED18_DANRE Mediator of RNA polymerase II transcription subunit 18 OS=Danio
rerio GN=med18 PE=2 SV=1
Length = 208
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGN--VASEVRLLCD 57
ME ++QG + Q +E+L L+G+C + + HE+ GN + R L D
Sbjct: 19 MEYLLQGSVLDQSLESLLHRLRGLCDNMEPESFADHELVYLLKGQQGNPFILRARRSLLD 78
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
P W +++LG G + LVR+ V+ S + N +G+++DHE + G
Sbjct: 79 ---PSVPWHLRYLGQPEVGDKSRH--ALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAV 175
F R + V VS ++++L TD P++ LVE V APA + +E +
Sbjct: 134 QVF---RKGVMKVVVSKLSRVLVPGNTDNTEPLSLSY-LVELSVLAPAGQDTVSE---DM 186
Query: 176 SSFCEYLAPLLHLSK 190
SF E L PL+HL K
Sbjct: 187 RSFAEQLKPLVHLEK 201
>sp|Q28GE1|MED18_XENTR Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus
tropicalis GN=med18 PE=2 SV=1
Length = 208
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHE--ICLKNNPNLGNVASE--VRLL 55
ME ++QG I Q +E+L L+G+C + + HE LK G AS +R
Sbjct: 19 MEYLLQGSILDQGLESLLHRLRGLCDNMEPETFADHESVYLLK-----GQQASPFVLRAR 73
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
L++P W +++LG AG LVR+ V+ S +G+++DHE +
Sbjct: 74 RPLDRPGAPWHLRYLGQP--EAGDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVA 131
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTEVAS 173
G H R + V V V ++L A + A P++ LVE++ APA +N +A
Sbjct: 132 RG---HLFRKGVMKVAVYKVFRVLVAGAAEGAEPLSLSY-LVELSAVAPAGQDN---IAD 184
Query: 174 AVSSFCEYLAPLLHLSK 190
V F E L PL+ L K
Sbjct: 185 EVRGFAEQLRPLVQLEK 201
>sp|Q6DD39|MED18_XENLA Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus
laevis GN=med18 PE=2 SV=1
Length = 208
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHE--ICLKNNPNLGNVASE--VRLL 55
ME ++QG I Q +E+L L+G+C + + HE LK G AS +R
Sbjct: 19 MEYLLQGSILDQGLESLLHRLRGLCDNMEPETFADHESVYLLK-----GQQASPFVLRAR 73
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
L++P W +++LG AG LVR+ V+ S +G+++DHE +
Sbjct: 74 RPLDRPGAPWHLRYLGQP--EAGDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVA 131
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTEVAS 173
G H R + V V V ++L A + A P++ LVE++ APA +N +A
Sbjct: 132 RG---HLFRKGVMKVAVYKVFRVLVSGAAEGAEPLSLSY-LVELSAVAPAGQDN---IAD 184
Query: 174 AVSSFCEYLAPLLHLSK 190
V F E L PL+ L K
Sbjct: 185 EVRGFAEQLRPLVQLEK 201
>sp|Q9CZ82|MED18_MOUSE Mediator of RNA polymerase II transcription subunit 18 OS=Mus
musculus GN=Med18 PE=2 SV=1
Length = 208
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + V V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKVVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>sp|Q0VCD4|MED18_BOVIN Mediator of RNA polymerase II transcription subunit 18 OS=Bos
taurus GN=MED18 PE=2 SV=1
Length = 208
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFVDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
L++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 LDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIVVYKIFRILVPGNTDNTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201
>sp|Q9BUE0|MED18_HUMAN Mediator of RNA polymerase II transcription subunit 18 OS=Homo
sapiens GN=MED18 PE=1 SV=1
Length = 208
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
ME ++QG + +E+L L+G+C + + HE+ G AS +R
Sbjct: 19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75
Query: 58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
+++ W +++LG G + LVR+ V+ S+N +G+++DHE + G
Sbjct: 76 MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133
Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
H R + + V + ++L TD EA+ ++ ++L V APA + V+ +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186
Query: 176 SSFCEYLAPLLHLSK 190
+F E L PL+HL K
Sbjct: 187 KNFAEQLKPLVHLEK 201
>sp|Q9XZT1|MED18_DROME Mediator of RNA polymerase II transcription subunit 18
OS=Drosophila melanogaster GN=MED18 PE=1 SV=1
Length = 217
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
+E ++QG I VE L L+G+C V H E+C+ PN N +R+
Sbjct: 23 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPN-ANQPLLLRVRR 81
Query: 57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
L + P + +++LG + LVRS ++ + L +G++L+ E +
Sbjct: 82 ALGRDAP-FQMRYLGNPEVDL---RRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
G+ F R ++ +TVS + K++ D A +VE V AP EN V
Sbjct: 138 GYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191
Query: 175 VSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 192 MRVFAEQLKPLVQLEK 207
>sp|Q966M5|MED18_CAEEL Mediator of RNA polymerase II transcription subunit 18
OS=Caenorhabditis elegans GN=mdt-18 PE=3 SV=1
Length = 232
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 15/210 (7%)
Query: 2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK-NNPNLGNVASEVRLLCDLE- 59
ECV+ G I ++V LE L G+C + HE+ + + ++ ++++L
Sbjct: 27 ECVLYGSIFAKNVPDLERRLAGLCDPGCEEFFEHEMSFSLRSSGIMDIKTDIKLRRRFRT 86
Query: 60 --QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHELLRV 116
+ + W +K++G ++ +VR + S V S++ + +LG ++D+E +
Sbjct: 87 EHRIQNYWQLKYIGVP---EPDQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQ 143
Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATD-EAVPVTPGIQLVEVTA--PASSENYTEVAS 173
G I + S + + D ++ LVE++ P S+E Y A
Sbjct: 144 G---KLWTKGNIKILHSILTSTSRAGTYDSNSIKSVSDSALVEISISLPESAE-YMPAAK 199
Query: 174 AVSSFCEYLAPLLHLSKPGVSTGVVPTAAA 203
++ F + L PL+++ K + P AA
Sbjct: 200 SLRDFADQLMPLVNMEKVDYWKKMFPAQAA 229
>sp|Q17IN5|MED18_AEDAE Mediator of RNA polymerase II transcription subunit 18 OS=Aedes
aegypti GN=MED18 PE=3 SV=1
Length = 215
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 2 ECVVQGIIETQHVEALEILLQGICG---VHRDRLRVHEICLK---NNPNLGNVASEVRLL 55
E ++QG I E L L+G+C + +E+CL N + VR
Sbjct: 27 EYLLQGSILDSAAEHLLHRLRGLCDNVDTGPEAFADYEMCLSLKVPNEKTPVMTVRVRKA 86
Query: 56 CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
D + P + ++++G G LVRS ++ + + + +G+++D E +
Sbjct: 87 QDTDAP---YQLRYIGQP--ELGDRNRPTLVRSSLDIACTPHVVDFLTEMGFRVDFEYIT 141
Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVAS 173
G+ F R ++ VTVS K+ K+++++ P++ LVE V AP + +A
Sbjct: 142 KGYMF---RKGRMKVTVS---KIFKVNSSE---PISQSY-LVELSVLAPTGQD---VIAD 188
Query: 174 AVSSFCEYLAPLLHLSK 190
+ F E L PL+ L K
Sbjct: 189 DMRIFAEQLKPLVQLEK 205
>sp|Q7QGX9|MED18_ANOGA Mediator of RNA polymerase II transcription subunit 18 OS=Anopheles
gambiae GN=MED18 PE=3 SV=3
Length = 211
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 52 VRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDH 111
VR D+E P ++++G G LVRS ++ + + + +G++LD
Sbjct: 80 VRRAQDVEAP---LQLRYIGQPELGDRTR--PTLVRSSLDIACTPHVIDFLTEMGFRLDF 134
Query: 112 ELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYT 169
E G+ F R ++ +TVS + K + P++ LVE V AP +
Sbjct: 135 EYSTKGYMF---RKGRMKITVSKILKNM-------TEPISQSY-LVELSVLAPKGQD--- 180
Query: 170 EVASAVSSFCEYLAPLLHLSK 190
+A + F E L PL+ L K
Sbjct: 181 AIAEDMRIFAEQLKPLVQLEK 201
>sp|Q54MR3|MED18_DICDI Putative mediator of RNA polymerase II transcription subunit 18
OS=Dictyostelium discoideum GN=med18 PE=3 SV=1
Length = 251
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 80 EQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKML 139
+ I+ ++R++V+ K S+ LGY D+E G+ + + +++ VN
Sbjct: 121 DNINAMIRNVVDIKSSETFFIYLENLGYVKDYEYFVDGYQY-----STYNLSLFLVNHRR 175
Query: 140 KLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSK 190
L+ + + +VE+ + E + A ++++ EYL P + L K
Sbjct: 176 VLNDGTKGELLNKH-SMVELQCLSGEEGFVAAAEYLNTYAEYLYPFVELIK 225
>sp|Q9DBE0|CSAD_MOUSE Cysteine sulfinic acid decarboxylase OS=Mus musculus GN=Csad PE=2
SV=1
Length = 493
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 16 ALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMR 75
A+E LLQ + G+ V E LK G ASE +C+ ++PE + L +
Sbjct: 16 AVEALLQDVFGI-----VVDEAILK-----GTSASEK--VCEWKEPEELKQLLDLELQSQ 63
Query: 76 GAGAEQISVLVRSMVESKVSKNALRLFNALGYKLD 110
G EQI R+++ V R FN L LD
Sbjct: 64 GESREQILERCRTVIHYSVKTGHPRFFNQLFSGLD 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,137,146
Number of Sequences: 539616
Number of extensions: 2765707
Number of successful extensions: 7679
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7662
Number of HSP's gapped (non-prelim): 17
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)