BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027894
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 287 bits (735), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/174 (78%), Positives = 157/174 (90%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK+D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
LRHL AV T++A+AFAE+ N F+ETSAL+S NVE AF +LT+IY +VS+K +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 281 bits (720), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/169 (79%), Positives = 154/169 (91%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
K+DLRHL AV T++A+AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 280 bits (715), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 133/168 (79%), Positives = 152/168 (90%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
AGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK+D
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
LRHL AV T++A+AFAE+ F+ETSAL+S NVE AF +LT+IY +
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 278 bits (712), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 153/169 (90%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
K+DLRHL AV T++A+AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 276 bits (707), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 132/170 (77%), Positives = 153/170 (90%)
Query: 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
DTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVIMLVGNK
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
+DLRHL AV T++A+AFAE+ F+ETSAL+S NVE AF +LT+IY +
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 275 bits (703), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/169 (78%), Positives = 152/169 (89%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
D++YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVI LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
K+DLRHL AV T++A+AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 273 bits (697), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 131/167 (78%), Positives = 150/167 (89%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
+YDYL+KVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+V+ K +KAQIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELR H DSNIVI LVGNK+
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
DLRHL AV T++A+AFAE+ F+ETSAL+S NVE AF +LT+IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 258 bits (659), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 122/173 (70%), Positives = 153/173 (88%), Gaps = 1/173 (0%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWD 68
YDYL+K+VLIGDSGVGKSNLLSRFTR+EF+LESKSTIGVEFAT+SI++++ KI+KAQIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQERYRAITSAYYRGAVGALLVYD+T+ +FEN+E+WLKELR + DSNIVI+LVGNK+
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
DL+HL ++ DA +A++E F+ETSALE+ NVE AF ++L +IY+V +K
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 118/199 (59%), Positives = 152/199 (76%), Gaps = 7/199 (3%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
DYD L+K+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++ +E K +KAQIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQERYRAITSAYYRGAVGAL+VYD+++ ++EN WL ELR + D N+ + L+GNK+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG-- 186
DL HL AV TE++K FA+ F ETSAL S NV+ AF E++ IY VS+ +D+G
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 187 -----GDPAALPKGQTINV 200
+ A+ P G TI++
Sbjct: 189 SANGNANGASAPNGPTISL 207
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/179 (63%), Positives = 143/179 (79%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
DYDYL+K+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR+I VE+K +KAQIWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAG ERYRAITSAYYRGAVGAL+VYD+++ ++EN WL ELR + D N+ + L+GNK+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGG 187
DL HL AV T++AK FA F ETSAL S NV+ AF E++ I+ +VS+ +D+ G
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSG 184
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 234 bits (596), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/177 (63%), Positives = 142/177 (80%)
Query: 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
R EDY++++KVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ + VKA
Sbjct: 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+ VERWLKEL H ++ IV+MLV
Sbjct: 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
GNK+DL V TE+A+ FAE F+ETSAL+S NVE AF VL +I+ VS++
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 231 bits (589), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 141/174 (81%)
Query: 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
EDY++++KVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ + VKAQIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
DTAG ERYRAITSAYYRGAVGALLV+D+T+H T+ VERWLKEL H ++ IV+MLVGNK
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
+DL V TE+A+ FAE F+ETSAL+S NVE AF VL +I+ VS++
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 115/171 (67%)
Query: 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
A +Y Y++K ++IGD GVGKS LL +FT +F + TIGVEF TR I V + +K Q
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
IWDTAGQER+RA+T +YYRGA GAL+VYD+TR T+ ++ WL + R T+ N VI+L+G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
NKADL V+ E+AK FAE F+E SA NVE+AF E +IY
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 113/166 (68%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
Y YL+K ++IGD+GVGKS LL +FT F TIGVEF R I ++ K +K QIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
AGQE +R+IT +YYRGA GALLVYD+TR TF ++ WL++ R H++SN+VIML+GNK+D
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
L V E+ +AFA FMETSA + NVE AF +IY
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 114/171 (66%)
Query: 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
A +Y Y++K ++IGD GVGKS LL +FT +F + TIGVEF TR I V + +K Q
Sbjct: 23 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
IWDTAGQ R+RA+T +YYRGA GAL+VYD+TR T+ ++ WL + R T+ N VI+L+G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
NKADL V+ E+AK FAE F+E SA NVE+AF E +IY
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 113/169 (66%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
YL+K ++IGD+GVGKS LL +FT F TIGVEF R + ++ K +K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
QE +R+IT +YYRGA GALLVYD+TR TF ++ WL++ R H+ SN+VIML+GNK+DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180
V E+ +AFA FMETSA + NVE AF +IY + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 137/209 (65%), Gaps = 5/209 (2%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIG+SGVGKS LL RF+ + ++ + STIGV+F +++ ++ K VK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRG+ G ++VYDVT +F V+ WL+E+ + S ++ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
K DL+ V + AK FA+ F+ETSAL+S NVE+AF + QI +S++ L+
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 GDPAALPKGQTINVGGKDDVSAVKKVGCC 215
KG +N+ G+ S GCC
Sbjct: 182 TQKKE-DKGN-VNLKGQ---SLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 137/215 (63%), Gaps = 16/215 (7%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIG+SGVGKS LL RF+ + ++ + STIGV+F +++ ++ K VK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRG+ G ++VYDVT +F V+ WL+E+ + S ++ +LVGN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIG 186
K DL+ V + AK FA+ F+ETSAL+S NVE+AF + QI +S++ L+
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 GDPAALP-----KGQTI-NVGGKDDVSAVKKVGCC 215
KGQ++ N GG GCC
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGG----------GCC 206
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 119/166 (71%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
+YDYL+K++LIG+SGVGKS LL RF+ + ++ + STIGV+F +++ ++ K VK QIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRG+ G ++VYDVT +F V+ WL+E+ + S ++ +LVGNK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL+ V + AK FA+ F+ETSAL+S NVE+AF + QI
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 114/170 (67%)
Query: 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA 64
R +YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K
Sbjct: 17 RGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
Query: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV 124
QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LV
Sbjct: 77 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 136
Query: 125 GNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
GNK DL V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 114/168 (67%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Query: 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ 65
DE YD+L+K+VL+GD+ VGK+ ++ RF FS STIGV+F +++ ++ K VK Q
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVG 125
IWDTAGQER+R IT +YYR A GA+L YD+T+ +F +V W++++R + SNIV +L+G
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFF-METSALESMNVENAFTEVLTQI 174
NK+DL L VS +A++ AE + +ETSA +S NVE AF V T++
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 166 bits (420), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 114/166 (68%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
+YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT ++ NV++WL+E+ + N+ +LVGNK+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL V AK FA+ F+ETSA + NVE AF + +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 114/166 (68%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
+YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT ++ NV++WL+E+ + N+ +LVGNK+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL V AK FA+ F+ETSA + NVE AF + +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 113/166 (68%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
+YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 118/168 (70%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I +E+K VK QI
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F+NV++W++E+ + N+ +LVGN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL V++++ + A+ F+ETSA + NVE AF + +I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 113/168 (67%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL V AK FA+ F+ETSA + NVE +F +I
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 114/168 (67%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIGDSGVGK+ LL RF + ++ STIGV+F R+I ++ K +K QI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 163 bits (413), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 111/158 (70%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
YDYL+K++LIGDSGVGK+ +L RF+ + F+ STIG++F R+I ++ K +K QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
AGQER+R IT+AYYRGA+G +LVYD+T +F+N+ W++ + H +++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ VS E + A FMETSA ++NVENAF
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 112/177 (63%)
Query: 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
E YD+L+K ++IG++G GKS LL +F +F +S TIGVEF ++ I V K VK QIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
DTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NIVI+L GNK
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
DL V+ +A FA+ F+ETSAL NVE AF + +I + + LD
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 113/168 (67%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
+ +YDYL+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WDTAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVG
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
K DL V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 110/174 (63%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D+L+K ++IG +G GKS LL +F N+F +S TIGVEF +R + V K VK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQER+R++T +YYRGA GALLVYD+T T+ ++ WL + R NIV++L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALD 184
V+ +A FA+ F+ETSAL NVE AF + I + + LD
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 112/166 (67%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
+YD L+K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 115/171 (67%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
DYL+K++LIGDSGVGK+ +L RF+ + F+ STIG++F R+I ++ K +K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA+G +LVYD+T +F+N+ W++ + H +++ M++GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
VS E + A FMETSA ++NVENAF + I + +K
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 109/169 (64%)
Query: 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
E YD+L+K ++IG++G GKS LL +F +F +S TIGVEF ++ I V K VK QIW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
DTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NIVI+L GNK
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 125
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
DL V+ +A FA+ F+ETSAL +VE AF + +I +
Sbjct: 126 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
DYD+L+K+++IGDSGVGKS+LL RF N FS +TIGV+F R++ + + VK QIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R ITS YYRG G ++VYDVT +F NV+RWL E+ + D ++ +LVGNK
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
D V TEDA FA + ETSA E++NVE F
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 114/167 (68%)
Query: 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
EDYD+L+K+VLIG++GVGK+ L+ RFT+ F +TIGV+F +++ + + VK QIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
DTAGQER+R+IT +YYR A +L YD+T +F + WL+E+ + + ++ +LVGNK
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL VS + A+ F+E ++ +++ETSA ES NVE F ++ ++
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 117/189 (61%), Gaps = 18/189 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+S+ ++D VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ +IVI L GNKADL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALP 193
V E+A+A+A+ + FMETSA +MNV + F +++K LP
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFL--------AIAKK----------LP 170
Query: 194 KGQTINVGG 202
K + N+GG
Sbjct: 171 KSEPQNLGG 179
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 109/163 (66%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+VL+GD G GKS+L+ RF +++F +STIG F ++++ V D VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
Y ++ YYRGA A++V+DVT +FE ++W++EL+ + N+V+ L GNK+DL
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177
V+ EDA+ +A+ FFMETSA + NV+ F E+ ++ V
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 108/169 (63%)
Query: 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW 67
E YD+L+K ++IG++G GKS LL +F +F +S TIGVEF ++ I V K VK QIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127
DTAG ER+R++T +YYRGA GALLVYD+T T+ + WL + R NIVI+L GNK
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 ADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
DL V+ +A FA+ F+ETSAL +VE AF + +I +
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 107/160 (66%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
+R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V AK FA+ F+ETSA + NVE +F + +I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 105/157 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ NIVI L GNKADL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
AV ++A+A+A+ + FMETSA +MNV F +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 108/161 (67%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 104/157 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STI F T+++ ++D VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ NIVI L GNKADL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
AV ++A+A+A+ + FMETSA +MNV F +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 106/161 (65%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T TF + W+KEL+ NIVI L GNKADL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+A+A+ + FMETSA +MNV F + ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 107/161 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + FMETSA SMNV F + ++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
YD + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK Q+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
AGQER+R IT+AYYRGA+G +LVYDVT TF N+++W K + H + ++LVGNK+D
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ V+ + +A A+ F+E+SA NV F
Sbjct: 137 METRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 173
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+G+S VGKS+L+ RF + +F +STIG F T+++ ++D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
RY ++ YYRGA A++VYD+T +F + W+KEL+ NIVI L GNKADL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
AV ++A+++A+ + F ETSA S NV F + ++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 105/160 (65%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
KV L+GD+GVGKS+++ RF + F TIG F T++++ ++++ K IWDTAGQER
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
+RA+ YYRG+ A++VYD+T+ TF ++ W++ELR H +IV+ + GNK DL +
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 126
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V DAK +A+ + F+ETSA ++N+ F E+ +I
Sbjct: 127 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA+G +LVYD+T TF N+++W K + H + ++LVGNK+D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
V+ + +A A+ F+E+SA NV F
Sbjct: 121 ETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWD 68
YD +KV+L+GDSGVGK+ LL RF F + ST+G++F + + V+ VK Q+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQER+R++T AYYR A LL+YDVT +F+N++ WL E+ + ++ +ML+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
D H V ED + A+ FMETSA +NV+ AFT + ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 103/160 (64%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
KV L+GD+GVGKS+++ RF ++ F TIG F T+++ +++ K IWDTAGQER
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
+ ++ YYRG+ A++VYD+T+ +F +++W+KEL+ H NIV+ + GNK DL +
Sbjct: 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V +DAK +AE +ETSA ++N+E F + QI
Sbjct: 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 106/164 (64%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
DY++K++LIG+S VGK++ L R+ + F+ ST+G++F +++ DK +K QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQERYR IT+AYYRGA+G LL+YD+ +F V+ W +++ ++ N ++LVGNK DL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V ED + A+ F E SA E++NV+ F ++ I
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 110/166 (66%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
++DY++K+++IG+S VGK++ L R+ + F+ ST+G++F +++ +K VK QIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQERYR IT+AYYRGA+G +L+YD+T +F V+ W +++ ++ N ++LVGNK
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
D+ V TE + AE+ F E SA E+++V AF ++ I
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 110/166 (66%)
Query: 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWD 68
++DY++K+++IG+S VGK++ L R+ + F+ ST+G++F ++I DK +K QIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
TAGQERYR IT+AYYRGA+G +L+YD+T +F V+ W +++ ++ N ++LVGNK
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
D+ VS+E + A+ F E SA +++NV+ F ++ I
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
KV L+GD+GVGKS+++ RF + F TIG F T++++ ++++ K IWDTAG ER
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
+RA+ YYRG+ A++VYD+T+ TF ++ W++ELR H +IV+ + GNK DL +
Sbjct: 68 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V DAK +A+ + F+ETSA ++N+ F E+ +I
Sbjct: 128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
+ K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
ER+R IT+AYYRGA+G +LVYDVT TF N+++W K + H + ++LVGNK+D+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
V+ + +A A+ F+E+SA NV F
Sbjct: 127 RV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA G +LVYD+T TF N+++W K + H + ++LVGNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
V+ + +A A+ F+E+SA NV F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D + K++LIGDSGVGKS LL RF ++F+ +TIG++F +++ + K VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQER+R IT+AYYRGA G +LVYDVT TF N+++W K + H + ++LVGNK+D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
V+ + +A A+ F+E+SA NV F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
DED K+++IG+SGVGKS+LL RFT + F E +TIGV+F ++I V+ K I
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVG 125
WDTAGQER+R +T +YYRGA G +LVYDVTR TF ++ WL EL + T ++IV LVG
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 126 NKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176
NK D + V + FA + + F+E SA V+ AF E++ +I
Sbjct: 129 NKIDKENR-EVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69
+DY +K+++IG+S VGK++ L R+ + F+ ST+G++F ++I DK +K QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129
AG ERYR IT+AYYRGA G +L YD+T +F V+ W +++ ++ N ++LVGNK D
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP 189
VS+E + A+ F E SA +++NV+ F ++ I S ++LD DP
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXS-ESLDT-ADP 182
Query: 190 A 190
A
Sbjct: 183 A 183
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 1/165 (0%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D+ +V++IG GVGK++L+ RFT + F KST+GV+F +++ + K ++ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
GQER+ +ITSAYYR A G +LVYD+T+ TF+++ +W+K + + + ++LVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 RHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
++ + + FA++ F E SA ++ NV+ F +++ I
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 104/157 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ V+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F +W+ ++R S+++IMLVGNK DL
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
VSTE+ + A+ N F+ETSA NV+ F V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 104/157 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ ++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
VS E+ + A+ N F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 104/157 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
VS E+ + A+ N F+ETSA NV+ F V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ ++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV---LTQIYHVVSRKALDIGGDPA 190
VS E+ + A+ N F+ETSA NV+ F V L + R D+
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
Query: 191 ALPKGQTINVGG 202
P+ Q ++ GG
Sbjct: 194 EKPQEQPVSEGG 205
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + V+D++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W E N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
DL + V+T+ A+A+ + N + ETSA E++NVE AF +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ V+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV---LTQIYHVVSRKALDIGGDPA 190
VS E+ + A+ N F+ETSA NV+ F V L + R D+
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 196
Query: 191 ALPKGQTINVGG 202
P+ Q ++ GG
Sbjct: 197 EKPQEQPVSEGG 208
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 85/115 (73%)
Query: 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
++LIGDSGVGKS LL RF + ++ STIGV+F R+I ++ K +K QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R ITS+YYRGA G ++VYDVT +F NV++WL+E+ + N+ +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + V+D++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W E N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
DL + V+T+ A+A+ + N + ETSA E++NVE AF +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + V+D++V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W E N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
D + V+T+ A+A+ + N + ETSA E++NVE AF +
Sbjct: 128 DFENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 105/161 (65%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V +G+ VGK+++++RF + F +STIG++F ++++ +++ V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +FEN +W++++ +++I LVGNK DL L
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V+ E+ A+ NT F ETSA N++ F + +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 104/157 (66%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
++ E+ + A+ + F+ETSA NV+ F V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 103/157 (65%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+V +G+ VGK++L++RF + F ++TIG++F ++++ +ED+ V+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R++ +Y R + A++VYD+T +F+ +W+ ++R S+++IMLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170
VS E+ + A+ N F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 11/181 (6%)
Query: 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---- 60
R DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + +
Sbjct: 17 RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 61 ------IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH 114
V Q+WDTAGQER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 77 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 115 TD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
N I+L+GNKADL V+ A+ A++ + ETSA NVE A +L
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 174 I 174
I
Sbjct: 197 I 197
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L KV+++GDSGVGK++L++++ +FS + K+TIG +F T+ + V+D++V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RGHTDSNIVIMLVGNKA 128
ER++++ A+YRGA +LV+DVT TF+ ++ W E N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEV 170
DL + V+T+ A+A+ + N + ETSA E++NVE AF +
Sbjct: 128 DLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+K++L+GD GVGKS+L++R+ N+F + TIGVEF + + V+ V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
ER+R++ + +YRG+ LL + V +F+N+ W KE + D + +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 129 DLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
D++ VSTE+A+A+ + + + ETSA +S NV AF E + +I
Sbjct: 131 DIKER-QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 14/219 (6%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + + +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT- 115
V Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 116 DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
N I+L+GNKADL V+ A+ AE+ + ETSA NVE + E L +
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLI 183
Query: 176 HVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGC 214
K ++ P + G + + G+ A KK C
Sbjct: 184 MKRMEKCVEKTQVPDTVNGGNSGKLDGEK--PAEKKCAC 220
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 11/179 (6%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + + +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
V Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
N I+L+GNKADL V+ A+ AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 113/188 (60%), Gaps = 15/188 (7%)
Query: 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-------- 57
+D DYDYL K + +GDSGVGK+++L ++T +F+ + +T+G++F R RV
Sbjct: 4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDF--REKRVVYRANGPD 61
Query: 58 ----EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRG 113
+ + Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+
Sbjct: 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121
Query: 114 HTDS-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172
H S N I+L GNK+DL AV E+A+ AE+ + ETSA N+ +A +L
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 173 QIYHVVSR 180
I + R
Sbjct: 182 LIMKRMER 189
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 102/163 (62%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
Y +KVVL+G+ VGK++L+ R+ N+F+ + +T+G F T+ + + K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
QER+ A+ YYR + GA+LVYD+T +F+ V+ W+KELR + I + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS ++A+++AE TSA ++ +E F ++ ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+VL+G++ VGKS+++ RF N+F+ + TIG F T+ + + + VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
+ ++ YYR A AL+VYDVT+ +F W+KEL +I+I LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 A---VSTEDAKAFAERENTFFMETSALESMNVENAF 167
V+ E+ + AE + F ETSA NV + F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+L+GD GVGKS+L++R+ N+F + TIGVEF + + V+ V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
ER+R++ + +YRG+ LL + V +F+N+ W KE + D + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 129 DLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
D+ VSTE+A+A+ + + ETSA ++ NV AF E + ++
Sbjct: 129 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 6/167 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+L+GD GVGKS+L++R+ N+F + TIGVEF + + V+ V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
ER+R++ + +YRG+ LL + V +F+N+ W KE + D + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 129 DLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
D+ VSTE+A+A+ + + ETSA ++ NV AF E + ++
Sbjct: 127 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 6/170 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L KV+L+GD GVGKS+L++R+ N+F ++ TIGVEF R + V+ + V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKA 128
ER++++ + +YRGA LL + V +FEN+ W KE + D + +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 129 DLRHLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVLTQIYHV 177
D + V+TE+A+ + E + ++ETSA + NV AF E + Q+ V
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 11/179 (6%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + + +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
V Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
N I+L+GNKADL V+ A+ AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 11/179 (6%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK------ 60
D DYDYL K++ +GDSGVGK+ L R+T N+F+ + +T+G++F + + + +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
V Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+ +
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
N I+L+GNKADL V+ A+ AE+ + ETSA NVE + +L I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 101/163 (61%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
Y +KVVL+G+ VGK++L+ R+ N+F+ + +T+ F T+ + + K V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
QER+ A+ YYR + GA+LVYD+T +F+ V+ W+KELR + I + +VGNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS ++A+++AE TSA ++ +E F ++ ++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 101/163 (61%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
Y +KVVL+G+ VGK++L+ R+ N+F+ + +T+ F T+ + + K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131
QER+ A+ YYR + GA+LVYD+T +F+ V+ W+KELR + I + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS ++A+++AE TSA ++ +E F ++ ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+VL GD+ VGKS+ L R +NEF +T+GV+F +++ V+ + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R+R+I +Y+R A G LL+YDVT +F N+ W+ + + IMLVGNKAD+R
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 CAVSTEDAKA----FAER----ENTFFMETSALESMNVENAFTEVLTQI 174
A TE K F E+ F ETSA + N+ A + ++
Sbjct: 149 AA--TEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 106/166 (63%), Gaps = 9/166 (5%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAG 71
+ KV+++GDSGVGK++L+ R+ +++S + K+TIG +F T+ + V+ DK+ Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN----IVIMLVGNK 127
QER++++ A+YRGA +LVYDVT +FEN++ W E H + N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 128 ADLRHLCA-VSTEDAKAFAER--ENTFFMETSALESMNVENAFTEV 170
D VS + A+ A+ + F+ TSA ++NV+ AF E+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEI 172
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
++K+++IGDS VGK+ L RF F +++TIGV+F R++ ++ + +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73 ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IVIMLVGNKADL 130
ER+R ++ YYR + VYD T +F ++ W++E + H +N I +LVGNK DL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSA 157
R V T+ A+ FA+ + ETSA
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSA 175
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
++K+++IGDS VGK+ L RF F +++TIGV+F R++ ++ + +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73 ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSN-IVIMLVGNKADL 130
ER+R ++ YYR + VYD+T +F ++ W++E + H +N I +LVGNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSA 157
R V T+ A+ FA+ + ETSA
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSA 166
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++G+ VGKS+++ R+ + F+ + K TIGV+F R I+V D+ V+ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
+ AIT AYYRGA +LV+ T +FE + W +++ +I LV NK DL
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125
Query: 135 AVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ E+A+ A+R F TS E +NV F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 40/199 (20%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI------------ 61
YK VL+G+S VGKS+++ R T++ F + +TIG F T + + D
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62 -------------------------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96
+K IWDTAGQERY +I YYRGA A++V+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97 RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETS 156
T + + W+ +L+ SN +I+LV NK D ++ V + + +A+ N F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 157 ALESMNVENAFTEVLTQIY 175
A N++N F + +IY
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
+Y + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF + + T + + + ++ + V+ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS E+AK AE+ N ++ETSA NV+ F +++ +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF +E + + + ++ + V+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS E+AK AE+ N ++ETSA NV+ F +++ +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF +E + + + ++ + V+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS E+AK AE+ N ++ETSA NV+ F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI-VKAQIWDTAGQE 73
K+V++GD GK++L + F + F + K TIG++F R I + + V QIWD GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADL 130
+ Y GA G LLVYD+T + +FEN+E W +K++ +++ ++ LVGNK DL
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127
Query: 131 RHLCAVSTEDAKAFAERENTF 151
H+ + E F + EN F
Sbjct: 128 EHMRTIKPEKHLRFCQ-ENGF 147
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 122
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 123 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 154
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++ +DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAA 191
+ A S F ++N + + SA + N E F + ++ + L+ PA
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---IGDPNLEFVAXPAL 182
Query: 192 LPK 194
P
Sbjct: 183 APP 185
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF + + T + + + ++ + V+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS E+AK A++ N ++ETSA NV+ F +++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-VEFATRSIRVEDKIVKAQIWDTAGQ 72
YK+ LIGD GVGK+ ++R F +T+G V + + ++K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132
E+ + YY GA GA+L +DVT +T +N+ RW+KE + + I++ NK D+++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+S + + +N + E SA + N F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF + + T + + + ++ + V+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLR 131
E Y AI Y+R G L V+ +T +F + ++ LR D N+ +LVGNK+DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS E+AK AE+ N ++ETSA NV+ F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 130 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +TIGVE S +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT +T++NV W ++L NI I+L GNK D++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 131
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALP 193
+ F ++N + + SA + N E F + ++ L+ PA P
Sbjct: 132 KVKAK--TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---AGNPQLEFVASPALAP 186
Query: 194 K 194
Sbjct: 187 P 187
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 131
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 132 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R E + +T+GVE +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 135 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +T+GVE +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL--R 131
++ + YY A A++++DVT VT++NV W ++L NI I+L GNK D+ R
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 125
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ A S F ++N + + SA + N E F
Sbjct: 126 KVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +TIGVE S +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT +T++NV W ++L NI I+L GNK D++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 124
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ F ++N + + SA + N E F
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+K+VL+GD G GK+ + R EF + +TIGVE S +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
++ + YY A A++++DVT +T++NV W ++L NI I+L GNK D++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 123
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
+ F ++N + + SA + N E F
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF + + T + + + ++ + V+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSN-IVIMLVGNKADL 130
E Y AI Y+R G LLV+ +T H +F + ++ LR + + I +++VGNK+DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V E+A++ AE ++ETSA NV+ F +++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
L+KV+++G GVGKS L +F +EF + + T + + + ++ + V+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSN-IVIMLVGNKADL 130
E Y AI Y+R G LLV+ +T H +F + ++ LR + + I +++VGNK+DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 131 RHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V E+A++ AE ++ETSA NV+ F +++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V T+ A+ A F+ETSA V++AF ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V T+ A+ A F+ETSA V++AF ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
KVV++G VGK++L +F EFS T+ ++ +D+ + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEF-HLHLVDTAGQDE 84
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLRHL 133
Y + ++ G G +LVY VT +F+ +E ++L GH + + ++LVGNKADL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 134 CAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + K AE FME+SA E+ + FT+V+ +I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V +GD VGK+ +L +T N+F + T+ F+ ++ V+ +IV +WDTAGQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQED 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + YRGA +L + + ++ENV ++W+ ELR N+ I+LVG K DLR
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDD 128
Query: 132 ------HLCAV-STEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
H + ST+ + + ++E S+ NV+ F + + RK
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
Y++V++G GVGKS L +F ++ F + TI + + + ++D+ + I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
+ A+ Y R G LLV+ VT +FE + ++ ++ LR ++L+GNKADL H
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
V+ E+ + A + +ME SA MNV+ AF E++
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L +F + F E TI + + + V+ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLTQI 174
V E + A + N F+E+SA +NV F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L +F + F + TI + + + V+ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 133 LCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
V E + A + N F+E+SA +NV F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L +F + F + TI + + + V+ + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 133 LCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
V E + A + N F+E+SA +NV F +++ QI
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V +GD VGK+ +L +T N F + T+ F+ ++ V+ V +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + YRGA LL + + ++EN+ ++WL EL+ H I I+LVG K DLR
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 132 ------HLCAVSTEDAKAFAERE---NTFFMETSALESMNVENAF 167
H A S A+ R+ ++E S+ NV+ F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
KVVL+GD G GK++LL F F ES + E +++V+ K V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + +Y A LL +DVT +F+N+ RW E+ H + I++VG K DLR
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLR 151
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V +GD VGK+ +L +T N F + T+ F+ ++ V+ V +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + YRGA +L + + ++ENV ++W+ ELR H + I+LVG K DLR
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 126
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + ++ENV +W E+R H S +I LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E ++ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y +L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L +F + F + TI + + + V+ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
++ A+ Y + G LVY +T TF +++ ++ LR ++ ++LVGNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLTQI 174
V E + A + N F+E+SA +NV F +++ QI
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQED 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + ++ENV +W E+R H S +I LVG K DLR
Sbjct: 70 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E ++ ++E SAL ++ F E +
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + ++ENV +W E+R H S +I LVG K DLR
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E ++ ++E SAL ++ F E +
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N FS E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 10/172 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+ + G +GVGKS L+ RF F E T+ + ++ ++D++V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV---ERWLKELRGHTDSNIVIMLVGNKADLR 131
+ R G +LVYD+T +FE V + L E++ N+ ++LVGNKADL
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLD 145
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
H VSTE+ + A F E SA E TE+ ++ V R+ +
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTG---EGNITEIFYELCREVRRRRM 194
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K VL+GD VGK++L+ +T N + E T F+ + V+ + V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
+ + Y LL + V +F+NV E+W+ E+R H I+LVG ++DLR
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 133 --------LC---AVSTEDAKAFAER-ENTFFMETSALESMNVENAF 167
C V E AK AE + ++E SAL N++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V +GD VGK+ LL +T N F + T+ F+ ++ V V +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + YRGA +L + + ++ENV ++W+ EL+ H + I+LVG K DLR
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F + TI F T+ I V + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
Y Y G +LVY VT +FE ++ L ++ G I IMLVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 122
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
+S E+ KA AE N F+E+SA E+ + F ++ +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 90
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 130 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 82
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 141
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F TI F T+ I V + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
Y Y G +LVY VT +FE ++ L ++ G I IMLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
+S E+ KA AE N F+E+SA E+ + F ++ +
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F TI F T+ I V + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
Y Y G +LVY VT +FE ++ L ++ G I IMLVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 119
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
+S E+ KA AE N F+E+SA E+ + F ++ +
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H + I+LVG K DLR
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 123
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E + ++E SAL ++ F E +
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H + I+LVG K DLR
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 123
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E + ++E SAL ++ F E +
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+ ++G VGKS+L +F +F TI F T+ I V + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
Y Y G +LVY VT +FE ++ L ++ G I IMLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV--QIPIMLVGNKKDLH 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173
+S E+ KA AE N F+E+SA E+ + F ++ +
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H + I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
L ++ A A E + ++E SAL ++ F E +
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F+++EF T+ E I V+ K V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V + EN+ E+W+ E++ H N+ I+LV NK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 132 -HLC---------AVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
H+ V T+D +A A R + ++E SA V F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V +E+ + A R + F ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 90
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAG E
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 125
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V +E+ + A R + F ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-IVKAQIWDTAGQ 72
Y+V + G GVGKS+L+ RF + F T VE R + DK I QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGS 61
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRGHTDSNIVIMLVGNKAD 129
++ A+ +LVY +T + E ++ + E++G +S I IMLVGNK D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPIMLVGNKCD 120
Query: 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171
V + +A+A A FMETSA + NV+ F E+L
Sbjct: 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 90
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + + +FENV +W E+R H N I+LVG K DLR
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 132 ----------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
L ++ A A+ ++E SAL ++ F E +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++GD GVGKS L +F + F E TI + + ++++ + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 77
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
+ A+ Y R G L+VY VT +FE+V+R+ + LR + ++LV NK DL H
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
L V+ + K A + N ++ETSA + +NV+ F +++
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 35/190 (18%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 65
Query: 75 YRAITSAYYRGAVGA-------------------LLVYDVTRHVTFENVE-RWLKELRGH 114
Y + Y VG L+ + + +FENV +W E+R H
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 115 TDSNIVIMLVGNKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESM 161
N I+LVG K DLR L ++ A A+ ++E SAL
Sbjct: 126 C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 162 NVENAFTEVL 171
++ F E +
Sbjct: 185 GLKTVFDEAI 194
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL F++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 ------LCAVSTEDAKA-----FAERENTF-FMETSALESMNVENAF 167
L + E K A R F +ME SA V F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++GD GVGKS L +F + F E TI + + ++++ + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQE 77
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
+ A+ Y R G L+VY VT +FE+V+R+ + LR + ++LV NK DL H
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
L V+ + K A + N ++ETSA + +NV+ F +++
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 15 KVVLIGDSGVGKSNLLSRFTR--NEFSLESKSTIGVEFATRSIRVEDKIVKAQIW--DTA 70
KV ++G++ VGKS L+S FT ++F + T GVE + + D V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNK 127
G + Y+ S Y+ G A+LV+DV+ +FE+ + W LK R + + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 128 ADL---RHLCAVSTEDAKAFAERENTFFMETSA-LESMNVENAFTEVLTQIYH 176
DL RH V + A+ +A F + SA + + F + T Y
Sbjct: 142 TDLPPQRH--QVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++GD GVGKS L +F + F + TI + + ++++ + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 72
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
+ A+ Y R G L+VY VT +FE+V+R+ + LR + ++LV NK DL H
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
L V+ + K A + N ++ETSA + +NV+ F +++
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++GD GVGKS L +F + F + TI + + ++++ + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQE 77
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRH 132
+ A+ Y R G L+VY VT +FE+V+R+ + LR + ++LV NK DL H
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 133 LCAVSTEDAKAFAERENTFFMETSALE-SMNVENAFTEVL 171
L V+ + K A + N ++ETSA + +NV+ F +++
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
DE L K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVG 125
WDTAG E Y + Y L+ + + +F +V +W E+R H N I+LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
K DLR L ++ A A+ ++E SAL ++ F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
DE L K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVG 125
WDTAG E Y + Y L+ + + +F +V +W E+R H N I+LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
K DLR L ++ A A+ ++E SAL ++ F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
DE L K V++GD VGK+ LL +T N F E T+ ++ ++ V+ K V +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVG 125
WDTAG E Y + Y L+ + + +F +V +W E+R H N I+LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266
Query: 126 NKADLR------------HLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVL 171
K DLR L ++ A A+ ++E SAL ++ F E +
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V +E+ + A R + F ++E SA V F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++++F T+ E I V+ K V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH- 132
Y + Y L+ + + + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 133 -----------LCAVSTEDAKAFAERENTF-FMETSALESMNVENAF 167
V E+ + A R F +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ +I I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
V + A+ A ++ETSA VE+AF ++ +I RK
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V T+ A+ A F+ETSA V++AF ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V T+ A+ A F+ETSA V++AF ++ +I
Sbjct: 124 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFT-RNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
LY+VVL+GD GVGK++L S F + E L + +G + R++ V+ + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 72 QERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKA 128
E+ S + +G ++VY + +FE+ +LR H ++ I+LVGNKA
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
DL VS E+ +A A + F+ETSA NV F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 123
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDK---IVKAQIWDT 69
Y+VVLIG+ GVGKS L + F S++S +G + R++ V+ + I+ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
G+ + + AY L+VY +T +FE +LR +I I+L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL VS + +A A + F+ETSA NV+ F ++ Q+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK+DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 129
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
+ K V++GD VGK+ LL + + F E T+ +A S+ V K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
E Y + Y L+ + V +F+NV E W+ EL+ + N+ +L+G + DLR
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 HLC------------AVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVLTQI 174
+ E + A E ++E SAL ++ F E + I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDK---IVKAQIWDT 69
Y+VVLIG+ GVGKS L + F S++S +G + R++ V+ + I+ +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
G+ + + AY L+VY +T +FE +LR +I I+L
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL VS + +A A + F+ETSA NV+ F ++ Q+
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 69
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 130 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI E + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F ++ F + TI + T+ V+ + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86 AVGALLVYDVTRHVTFENVERWLKE-LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF 144
G LLV+ + +F V + + LR + ++LVGNKADL V +A AF
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 145 AERENTFFMETSALESMNVENAFTEVL 171
+ + E SA +NV+ AF +++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLV 167
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
V + A+ A ++ETSA VE+AF ++ +I RK
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRK 181
V + A+ A ++ETSA VE+AF ++ +I RK
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK+DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
D + + K+V++GDS GK+ LL F ++ F T+ E T S ++ + ++ +
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 80
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVG 125
WDT+G Y + Y + L+ +D++R T ++V ++W E++ N ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 139
Query: 126 NKADLR 131
K+DLR
Sbjct: 140 CKSDLR 145
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDK---IVKAQIWDT 69
Y+VVLIG+ GVGKS L + F S++S +G + R++ V+ + I+ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
G+ + + AY L+VY +T +FE +LR +I I+L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL VS + +A A + F+ETSA NV+ F ++ Q+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQI 66
D + + K+V++GDS GK+ LL F ++ F T+ E T S ++ + ++ +
Sbjct: 17 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 75
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVG 125
WDT+G Y + Y + L+ +D++R T ++V ++W E++ N ++LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 134
Query: 126 NKADLR 131
K+DLR
Sbjct: 135 CKSDLR 140
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDK---IVKAQIWDT 69
Y+VVLIG+ GVGKS L + F S++S +G + R++ V+ + I+ +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKA 128
G+ + + + L+VY +T +FE +LR +I I+LVGNK+
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 129 DLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
DL VS + +A A + F+ETSA NV+ F ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +F ++ + ++++ DS+ V M LVGNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V T+ A A+ F+ETSA VE+AF ++ +I
Sbjct: 141 R-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GDS GK+ LL F ++ F T+ E T S ++ + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + Y + L+ +D++R T ++V ++W E++ N ++LVG K+DLR
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 124
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E + +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E +I + + + ++ + I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 68
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 128
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 129 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ + ++++ DS ++ ++LVGNK DL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V T+ A+ A F+ETSA V++AF ++ +I
Sbjct: 141 R-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167
V + A+ A ++ETSA VE+AF
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGN+ DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E +I + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+ E T+ +A ++ + + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGK+ L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F + TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F + TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K V++GD VGK+ LL +T N+F E T+ +A ++ + + ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR-- 131
Y + Y L+ + V +FENV E+W+ E+ H +LVG + DLR
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 132 ----------HLCAVSTEDAKAFA-ERENTFFMETSALESMNVENAFTEVL 171
++ E A+ A + + ++E SAL ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD VGK+ LL F++ E T+ F + ++ +++ +WDTAGQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR 131
Y + Y + LL + V +F+N+ +W E++ + D+ + LVG K DLR
Sbjct: 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS L +F F + TI +F + I V+ +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86 AVGALLVYDVTRHVTFENVERWLKEL-RGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF 144
G +LVY + +F++++ ++ R + ++LVGNK DL VS+ + +A
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
AE FMETSA V+ F E++ Q+
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 128 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD VGK+ LL F++ E T+ F + ++ +++ +WDTAGQE
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLR 131
Y + Y + LL + V +F+N+ +W E++ + D+ + LVG K DLR
Sbjct: 83 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
+YKV+L+G GVGKS L F E E+++ G + RSI V+ + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLR 131
+ R + ++VY VT +FE +LR ++ I+LVGNK+DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS ++ +A A + F+ETSA NV+ F V+ QI
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
YK+V++G GVGKS L + +N F E TI + + + ++ + I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRH 132
Y A+ Y R G L V+ + +FE++ ++ ++++ DS+ V M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
V + A+ A ++ETSA VE+AF ++ +I
Sbjct: 123 R-TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
+YKV+L+G GVGKS L F E E+++ G + RSI V+ + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLR 131
+ R + ++VY VT +FE +LR ++ I+LVGNK+DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS ++ +A A + F+ETSA NV+ F V+ QI
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72
+YKV+L+G GVGKS L F E E+++ G + RSI V+ + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKADLR 131
+ R + ++VY VT +FE +LR ++ I+LVGNK+DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 132 HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VS ++ +A A + F+ETSA NV+ F V+ QI
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+V++GD GK+ LL ++ +F T+ E + V+ + V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH 132
Y + Y + L+ + + + ENV E+W+ E+ H + I+LVG K DLR+
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRN 128
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+VL+GD GK+ +L ++ + E+ E T + E++ V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + Y + LL +D++R T ++ +++W E+ + S V +L+G K DLR
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 128
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+VL+GD GK+ +L ++ + E+ E T + E++ V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + Y + LL +D++R T ++ +++W E+ + S V +L+G K DLR
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 127
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
K+VL+GD GK+ +L ++ + E+ E T + E++ V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLR 131
Y + Y + LL +D++R T ++ +++W E+ + S V +L+G K DLR
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 144
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85
KS+L+ RF + F TI + + I + + QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 86 AVGALLVYDVTRHVTFEN---VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK 142
+LV+ VT + E + + + +++G + +I +MLVGNK D V T +A+
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQR-EVDTREAQ 137
Query: 143 AFAERENTFFMETSALESMNVENAFTEVLT 172
A A+ FMETSA + NV+ F E+LT
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---IVKAQIW 67
D ++KV+L+G+SGVGKS L F + + + R I V+ + +V IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 68 ---DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
D G R + + L+V+ VT +F V L LR G ++ ++L
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL VS E+ + A + +ETSA N F + QI
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFT----RNEFSLESKSTIGVEFATRSIRVEDK---IVK 63
D ++KV+L+G+SGVGKS L F N +E+ + R I V+ + ++
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSE----DTYERRIMVDKEEVTLIV 65
Query: 64 AQIW---DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDS 117
IW D G Q+ A+ L+V+ VT +F V L LR G
Sbjct: 66 YDIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 118 NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
++ ++LVGNK+DL VS E+ + A + +ETSA N F + QI
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---IVKAQIW-- 67
++KV+L+G+SGVGKS L F + + + R I V+ + ++ IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68 -DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIML 123
D G Q+ A+ L+V+ VT +F V L LR G ++ ++L
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
Query: 124 VGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174
VGNK+DL VS E+ + A + +ETSA N F + QI
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L + E + + TIG T V+ K + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R++ YYR G + V D R E E + L N V ++ NK DL
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSALES 160
+ + TE + R +F++++ S
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQSTCATS 162
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+++L + E + + TIG T VE K + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R + YY+ + V D R E E +K L N ++++ NK DL
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSA 157
++S TE + ++ +TS
Sbjct: 134 MSISEVTEKLGLQTIKNRKWYCQTSC 159
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ+R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQDR 73
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R + Y++ G + V D R E + K L + V++L NK DL +
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSA 157
A+S T+ + R T++++ +
Sbjct: 134 MAISEMTDKLGLQSLRNRTWYVQATC 159
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRVEDKIVK---AQIWDT 69
K+ ++G++G GK+ LL + + + S L +S T+G++ I++ DK + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
AG+E + + + L VYD+++ + + WL ++ S+ VI LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 129 DL 130
D+
Sbjct: 121 DV 122
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L + E + + TIG T V+ K + +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 56
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTF----ENVERWLK--ELRGHTDSNIVIMLVGNKA 128
R++ YYR G + V D E ++R L ELR N ++ NK
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR-----NAAWLVFANKQ 111
Query: 129 DLRHLCAVS--TEDAKAFAERENTFFMETSALES 160
DL + + TE + R +F++ + S
Sbjct: 112 DLPEAMSAAEITEKLGLHSIRNRPWFIQATCATS 145
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRVEDKIVK---AQIWDT 69
K+ ++G++G GK+ LL + + + S L +S T+G++ I++ DK + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70 AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKA 128
AG+E + + + L VYD+++ + + WL ++ S+ VI LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 129 DL 130
D+
Sbjct: 123 DV 124
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75
+ ++G G GKS L +F F E + +++ V+ + V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH---TDSNIVIMLVGNKADLRH 132
R Y A L+VY V +F++ +L+ L H T +I +L+GNK D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 133 LCAVSTEDAKAFAERENTFFMETSA-LESMNVENAFTEVLTQ 173
V+ + A A R F E SA L+ +V++ F E + +
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L + E + + TIG T V+ K + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R++ YYR G + V D R E E + L N ++ NK DL
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSALES 160
+ + TE + R +F++ + S
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATS 162
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 378
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWL------KELRGHTDSNIVIMLVGNKA 128
R + YY G G + V D + + L +E+R + +I++ NK
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMR-----DAIILIFANKQ 433
Query: 129 DL 130
DL
Sbjct: 434 DL 435
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQ---IWDTA 70
+KV+++G GK+ +L +F NE + + TIG VE+ +VK +WD
Sbjct: 17 HKVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGS-------NVEEIVVKNTHFLMWDIG 68
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129
GQE R+ + YY +LV D + L + H D +++ NK D
Sbjct: 69 GQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQD 128
Query: 130 LRHLCAVSTEDAK 142
++ C + E +K
Sbjct: 129 MKG-CMTAAEISK 140
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
++ L+G GK+ ++ +FS + T+G F R +V V +IWD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQPR 79
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADL 130
+R++ Y RG + + D E +E EL D I ++++GNK DL
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADR---EKIEASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
Query: 131 RHLCAVSTEDAKAFAEREN 149
+ D K E+ N
Sbjct: 137 PN-----ALDEKQLIEKMN 150
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD GQ++
Sbjct: 15 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ++
Sbjct: 31 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQDK 85
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R + Y++ G + V D R E+ + K L+ + V+++ NK D+ +
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 134 CAVS 137
VS
Sbjct: 146 MPVS 149
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD GQ++
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 68
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
++ L+G GK+ ++ +F+ + T+G F R I + +K +WD GQ R
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 79
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADL 130
+R++ Y RG + + D E +E EL D I ++++GNK DL
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
++ L+G GK+ ++ +F+ + T+G F R I + +K +WD GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQPR 88
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADL 130
+R++ Y RG + + D E +E EL D I ++++GNK DL
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 221
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R + Y++ G + V D R E E ++ L + V+++ NK DL
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++ +G GK+ +L + + S+ + T+G T V K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R + Y++ G + V D R E E ++ L + V+++ NK DL
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R + Y++ G + V D R E E ++ L + V+++ NK DL
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHL 133
R + YY G + V D ++ L + + + +I++ NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSA 157
+ + TE RE +F++++
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTC 159
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
+KV+++G GK+ +L +F+ NE + + TIG VE+ ++ + +WD
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-------NVEEIVINNTRFLMWDIG 73
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV-GNKAD 129
GQE R+ + YY ++V D T L ++ H D +L+ NK D
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 130 LRHLCAVS 137
++ V+
Sbjct: 134 VKECMTVA 141
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 72
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R + Y++ G + V D R E E ++ L + V+++ NK DL
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
+KV+++G GK+ +L +F+ NE + + TIG VE+ ++ + +WD
Sbjct: 23 HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-------NVEEIVINNTRFLMWDIG 74
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLV-GNKAD 129
GQE R+ + YY ++V D T L ++ H D +L+ NK D
Sbjct: 75 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 134
Query: 130 LRHLCAVS 137
++ V+
Sbjct: 135 VKECMTVA 142
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
+KV+++G GK+ +L +F+ NE + + TIG VE+ ++ + +WD
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-------NVEEIVINNTRFLMWDIG 68
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKAD 129
GQE R+ + YY ++V D T L ++ H D +++ NK D
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 130 LRHLCAVS 137
++ V+
Sbjct: 129 VKECMTVA 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV---KAQIWDTA 70
+KV+++G GK+ +L +F+ NE + + TIG VE+ ++ + +WD
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-------VEEIVINNTRFLMWDIG 68
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKAD 129
GQE R+ + YY ++V D T L ++ H D +++ NK D
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 130 LRHLCAVS 137
++ V+
Sbjct: 129 VKECMTVA 136
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD G ++
Sbjct: 5 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLDK 59
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD G ++
Sbjct: 4 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLDK 58
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 59 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + + S+ + T+G T V K VK +WD G ++
Sbjct: 15 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLDK 69
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R + YY G G + V D + + L + + + +I++ NK DL
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L R E + +K TIG T S K +K +WD GQ
Sbjct: 20 RILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTS 74
Query: 75 YRAITSAYYRGAVGALLVYDVT 96
R YY + V D T
Sbjct: 75 IRPYWRCYYADTAAVIFVVDST 96
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 76
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R + Y++ G + V D R E + + L + V+++ NK DL
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L +F + S T+G T +E + K IWD GQ+
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKS 72
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R+ Y+ G + V D ++ +R L+ L + +++ NK DL
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L +F + S T+G T +E + K IWD GQ+
Sbjct: 20 RLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKS 74
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R+ Y+ G + V D ++ +R L+ L + +++ NK DL
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L + E + + TIG T VE K + +WD G ++
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLDK 58
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130
R + Y++ G + V D R E E ++ L + V+++ NK DL
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G GK+ +L +F + S T+G T +E + K IWD GQ+
Sbjct: 20 RLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKS 74
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
R+ Y+ G + V D ++ +R L+ L + +++ NK DL
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L + E + + TIG F ++ + + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN--ISFTVWDVGGQDR 73
Query: 75 YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133
R++ YY G + V D R E E + L N ++ NK DL
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEA 133
Query: 134 CAVS--TEDAKAFAERENTFFMETSALES 160
+ + TE + R +F++ + S
Sbjct: 134 MSAAEITEKLGLHSIRNRPWFIQATCATS 162
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
++ ++GD+ GKS+L+ RF + + K+ E + + V+ + I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG--- 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
A + + A + V+ + +F+ V R L LRG + + LVG + +
Sbjct: 64 --APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121
Query: 132 HLCAVSTEDAKA---FAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
DA+A A+ + + ET A +NV+ F EV ++ + ++ L
Sbjct: 122 ASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
++ ++GD+ GKS+L+ RF + + K+ E + + V+ + I + AG
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG--- 63
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKADLR 131
A + + A + V+ + +F+ V R L LRG + + LVG + +
Sbjct: 64 --APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121
Query: 132 HLCAVSTEDAKA---FAERENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183
DA+A A+ + + ET A +NV+ F EV ++ + ++ L
Sbjct: 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 16 VVLIGDSGVGKSNLLSRF-TRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
V+ +G GK+ ++++ N S TIG + + + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE----KFKSSSLSFTVFDMSGQGR 79
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLR 131
YR + YY+ + V D + + + L L H D I I+ NK DLR
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L R E + + TIG T V K +K Q+WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQTS 58
Query: 75 YRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 59 IRPYWRCYYSNTDAVIYVVD 78
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS------IRVEDKIVKA--QI 66
KV LIGD GK++LL + F + T G+ T+ + +D++ +
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126
WD GQE A + + +L+ D T N WL+ + + + VI +V N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPVI-VVMN 158
Query: 127 KAD 129
K D
Sbjct: 159 KID 161
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 25 GKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR 84
GK+ +L +F + S T+G T +E + K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130
G + V D ++ +R L+ L + +++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRVEDKIVKAQIWDTAG 71
K++L+G SG GKS++ S N + +++ +TI VE + +R + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGNMT-LNLWDCGG 64
Query: 72 Q----ERYRAITSAYYRGAVGALL-VYDVTRHVTFENVE---RWLKELRGHT-DSNIVIM 122
Q E Y + V L+ V+DV +++E + LK+LR ++ D+ I ++
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 124
Query: 123 LVGNKADLRHL 133
L +K DL L
Sbjct: 125 L--HKMDLVQL 133
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L R E + + TIG T V K +K Q+WD G
Sbjct: 6 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 60
Query: 75 YRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 61 IRPYWRCYYSNTDAVIYVVD 80
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 7 DEDYDYL--YKVVLIGDSGVGKSNLLSRFTRNEFSLESKS 44
DE DYL + +L G SGVGKS++LSR T E + S
Sbjct: 157 DELVDYLEGFICILAGPSGVGKSSILSRLTGEELRTQEVS 196
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++++G G GK+ +L R E + + TIG T V K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 75 YRAITSAYYRGAVGALLVYD 94
R YY + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
YR ++ G V L + ++ H+ E + ++ D N++ +VG LR L
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT 559
Query: 135 AVSTEDAKAFAERENTFF 152
+DA+AF F
Sbjct: 560 HAFDDDARAFCRSRMQFL 577
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D +++L+G GK+ LL + + S T G F +S V+ + K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKS--VQSQGFKLNVWDIG 69
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKAD 129
GQ + R +Y+ + V D FE + + L S + +++ NK D
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 130 L 130
L
Sbjct: 130 L 130
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134
YR ++ G V L + ++ H+ E + ++ D N++ +VG LR L
Sbjct: 500 YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLT 559
Query: 135 AVSTEDAKAFAERENTFF 152
+DA+AF F
Sbjct: 560 HAFDDDARAFCRSRMQFL 577
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA 70
D +++L+G GK+ LL + + S T G F +S V+ + K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKS--VQSQGFKLNVWDIG 68
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKAD 129
GQ + R +Y+ + V D FE + + L S + +++ NK D
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 130 L 130
L
Sbjct: 129 L 129
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++L+G GK+ LL + + S T G F +S V+ + K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKS--VQSQGFKLNVWDIGGQRK 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADL 130
R +Y+ + V D FE + + L S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|B Chain B, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|C Chain C, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|D Chain D, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
Length = 438
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLES---KSTIGVEFATRSIRVEDKIVKAQIWDT 69
+Y+V+ +G G N ++ R F E G++ + +V K+VK +++D
Sbjct: 321 MYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDRVFDK 380
Query: 70 AGQERYRAITSAYYRGAVGALLV 92
+ERY A Y+ +GA +V
Sbjct: 381 FIEERY-----ASYKDGIGADIV 398
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74
+++L+G GK+ LL + + S T G F +S V+ + K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKS--VQSQGFKLNVWDIGGLRK 60
Query: 75 YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADL 130
R +Y+ + V D FE + + L S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 223 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 252
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 222 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 251
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 225 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 254
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 245 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 274
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 245 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 274
>pdb|3P45|B Chain B, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|D Chain D, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|F Chain F, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|H Chain H, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|J Chain J, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|L Chain L, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|N Chain N, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|P Chain P, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 108
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 53 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 82
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 238 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 267
>pdb|3P4U|B Chain B, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
pdb|3P4U|D Chain D, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
Length = 108
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 53 FTELLTLVNRKVSQRRVDFXKDPSAIGKKQ 82
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---GVEFATRSIRVEDKIVKAQIWDTA 70
+ ++++G +GVGK+ + + R +F + KS + G F R+ VE + Q+W
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTF--RAAAVE----QLQVW--- 343
Query: 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
GQ R A + GA A +++D + N++ + + G + +M
Sbjct: 344 GQ-RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLM 394
>pdb|3QNW|B Chain B, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|D Chain D, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|F Chain F, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|H Chain H, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 100
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196
FTE+LT + VS++ +D DP+A+ K Q
Sbjct: 52 FTELLTLVNRKVSQRRVDFCKDPSAIGKKQ 81
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT-RSIRVEDKIVKAQIWDTAGQ 72
+ ++++G +GVGK+ + + R +F + KS + T R+ VE + Q+W GQ
Sbjct: 94 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE----QLQVW---GQ 145
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
R A + GA A +++D + N++ + + G + +M
Sbjct: 146 -RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLM 194
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT-RSIRVEDKIVKAQIWDTAGQ 72
+ ++++G +GVGK+ + + R +F + KS + T R+ VE + Q+W GQ
Sbjct: 99 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE----QLQVW---GQ 150
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
R A + GA A +++D + N++ + + G + +M
Sbjct: 151 -RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLM 199
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT-RSIRVEDKIVKAQIWDTAGQ 72
+ ++++G +GVGK+ + + R +F + KS + T R+ VE + Q+W GQ
Sbjct: 100 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE----QLQVW---GQ 151
Query: 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM 122
R A + GA A +++D + N++ + + G + +M
Sbjct: 152 -RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLM 200
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIW---DTAG 71
K+V +G GK+ LL + +G T E+ + + D G
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDR--------LGQHVPTLHPTSEELTIAGMTFTTFDLGG 88
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-GHTDSNIVIMLVGNKAD 129
E+ R + Y G + + D H + L L T SN+ I+++GNK D
Sbjct: 89 HEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKID 147
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73
+VV+ G GK+ ++++ + S + +T+G T E V ++D G +
Sbjct: 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAK 74
Query: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116
++R + YY + V D + H+ V+ ++ + H D
Sbjct: 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
+ + ++++G+SG+GKS L++ + E E R++++E V +I +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTV--EIEERGV 93
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
+ R + + Y A+ + E ER+L + G +I+
Sbjct: 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHII 142
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
+ + ++++G+SG+GKS L++ + E E R++++E V +I +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTV--EIEERGV 61
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
+ R + + Y A+ + E ER+L + G +I+
Sbjct: 62 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHII 110
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIV----KAQIWDT 69
KV ++G VGKS+LL+ +++++ ++ + + TR + VE ++V Q+ DT
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTD----LPGTTRDV-VESQLVVGGIPVQVLDT 279
Query: 70 AG 71
AG
Sbjct: 280 AG 281
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
+ + + ++G+SG+GKS L++ + E + E R++++E V +I +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTV--EIEERGV 74
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
+ R + + Y A+ + E ER+L + G +I+
Sbjct: 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHII 123
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71
+ + + ++G+SG+GKS L++ + E E R++++E V +I +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTV--EIEERGV 93
Query: 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV 120
+ R + + Y A+ + E ER+L + G +I+
Sbjct: 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHII 142
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA---QIWDTA 70
++V++G VGKS LL+R + ++ + TR + E+ +++ +I DTA
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI----VTDIPGTTRDVISEEIVIRGILFRIVDTA 299
Query: 71 G 71
G
Sbjct: 300 G 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,976,386
Number of Sequences: 62578
Number of extensions: 216881
Number of successful extensions: 1469
Number of sequences better than 100.0: 372
Number of HSP's better than 100.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 375
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)