Query 027894
Match_columns 217
No_of_seqs 151 out of 1792
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.5E-42 3.3E-47 243.4 22.3 180 6-185 2-182 (205)
2 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.2E-40 2.7E-45 236.0 20.7 210 7-216 8-222 (222)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1.1E-40 2.3E-45 233.2 18.5 197 12-216 4-200 (200)
4 KOG0080 GTPase Rab18, small G 100.0 2E-40 4.3E-45 224.7 18.6 172 7-178 5-177 (209)
5 KOG0078 GTP-binding protein SE 100.0 3.8E-39 8.3E-44 229.4 22.9 176 6-181 5-180 (207)
6 KOG0098 GTPase Rab2, small G p 100.0 1.6E-39 3.6E-44 225.6 20.4 181 9-189 2-182 (216)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-39 3.9E-44 227.2 20.5 168 12-179 21-189 (221)
8 PLN03110 Rab GTPase; Provision 100.0 4.9E-38 1.1E-42 235.0 26.3 208 6-216 5-215 (216)
9 cd04121 Rab40 Rab40 subfamily. 100.0 3.3E-37 7E-42 225.4 24.1 169 10-179 3-171 (189)
10 KOG0394 Ras-related GTPase [Ge 100.0 2.9E-38 6.4E-43 218.9 17.0 172 9-180 5-183 (210)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.7E-37 1E-41 227.7 23.5 195 14-215 1-201 (201)
12 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-36 2.4E-41 224.6 24.2 165 14-178 1-166 (202)
13 cd04110 Rab35 Rab35 subfamily. 100.0 1.9E-36 4E-41 224.1 25.1 197 10-215 3-199 (199)
14 KOG0079 GTP-binding protein H- 100.0 6E-38 1.3E-42 209.8 14.6 170 8-178 3-172 (198)
15 KOG0093 GTPase Rab3, small G p 100.0 3.2E-37 6.9E-42 206.1 17.1 175 6-180 14-188 (193)
16 KOG0086 GTPase Rab4, small G p 100.0 5E-37 1.1E-41 206.6 16.6 190 7-196 3-192 (214)
17 cd04125 RabA_like RabA-like su 100.0 8.1E-36 1.7E-40 218.9 24.2 168 14-181 1-168 (188)
18 KOG0095 GTPase Rab30, small G 100.0 8.1E-37 1.8E-41 204.9 16.1 206 8-216 2-210 (213)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.2E-35 4.8E-40 221.1 25.2 176 1-178 1-191 (232)
20 PLN03108 Rab family protein; P 100.0 3.9E-35 8.4E-40 218.6 25.8 206 10-215 3-210 (210)
21 cd04112 Rab26 Rab26 subfamily. 100.0 2.4E-35 5.1E-40 216.9 23.4 165 14-178 1-166 (191)
22 cd04122 Rab14 Rab14 subfamily. 100.0 2.3E-35 5E-40 212.4 22.7 164 13-176 2-165 (166)
23 cd04144 Ras2 Ras2 subfamily. 100.0 1.6E-35 3.5E-40 217.6 22.0 166 15-181 1-169 (190)
24 KOG0088 GTPase Rab21, small G 100.0 1.5E-36 3.2E-41 205.5 14.3 193 1-193 1-193 (218)
25 cd04126 Rab20 Rab20 subfamily. 100.0 2.7E-35 5.7E-40 219.5 22.5 165 14-183 1-198 (220)
26 cd04109 Rab28 Rab28 subfamily. 100.0 5.4E-35 1.2E-39 218.7 23.0 165 14-178 1-169 (215)
27 cd01867 Rab8_Rab10_Rab13_like 100.0 7.1E-35 1.5E-39 210.0 22.7 166 11-176 1-166 (167)
28 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.1E-35 1.3E-39 212.4 21.6 163 11-175 3-180 (182)
29 PTZ00369 Ras-like protein; Pro 100.0 7.1E-35 1.5E-39 214.0 21.9 166 12-178 4-170 (189)
30 cd04111 Rab39 Rab39 subfamily. 100.0 3E-34 6.5E-39 213.8 24.8 170 13-182 2-173 (211)
31 KOG0091 GTPase Rab39, small G 100.0 3E-35 6.6E-40 200.1 16.4 179 8-186 3-184 (213)
32 cd04133 Rop_like Rop subfamily 100.0 9.3E-35 2E-39 210.2 20.2 160 14-175 2-173 (176)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.1E-34 4.5E-39 208.4 21.7 165 13-178 2-167 (172)
34 cd01865 Rab3 Rab3 subfamily. 100.0 3.6E-34 7.9E-39 205.9 22.7 162 14-175 2-163 (165)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.9E-34 8.5E-39 206.0 22.6 163 13-175 2-164 (166)
36 cd04127 Rab27A Rab27a subfamil 100.0 3.6E-34 7.7E-39 208.8 22.6 167 11-177 2-179 (180)
37 cd04131 Rnd Rnd subfamily. Th 100.0 1.8E-34 3.9E-39 209.5 20.8 161 13-175 1-176 (178)
38 cd01866 Rab2 Rab2 subfamily. 100.0 5.3E-34 1.2E-38 205.7 23.2 166 11-176 2-167 (168)
39 cd04117 Rab15 Rab15 subfamily. 100.0 2.8E-34 6E-39 205.7 21.5 160 14-173 1-160 (161)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 6E-34 1.3E-38 205.1 21.7 162 14-175 1-167 (168)
41 PF00071 Ras: Ras family; Int 100.0 7.6E-34 1.6E-38 203.6 22.0 161 15-175 1-161 (162)
42 cd01875 RhoG RhoG subfamily. 100.0 6.1E-34 1.3E-38 209.3 21.8 162 13-176 3-178 (191)
43 cd01868 Rab11_like Rab11-like. 100.0 8.2E-34 1.8E-38 204.1 22.0 163 12-174 2-164 (165)
44 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.7E-33 3.7E-38 210.0 23.8 163 14-178 2-179 (222)
45 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-33 2.6E-38 203.2 22.0 163 11-173 1-164 (165)
46 cd04132 Rho4_like Rho4-like su 100.0 1.3E-33 2.8E-38 207.0 22.1 166 14-181 1-173 (187)
47 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.1E-33 2.4E-38 206.1 21.4 162 14-176 1-167 (182)
48 PLN03071 GTP-binding nuclear p 100.0 2E-33 4.3E-38 210.4 22.1 166 10-178 10-175 (219)
49 cd04118 Rab24 Rab24 subfamily. 100.0 4.6E-33 1E-37 205.1 23.8 164 14-178 1-169 (193)
50 cd04136 Rap_like Rap-like subf 100.0 2.1E-33 4.5E-38 201.5 20.4 160 14-174 2-162 (163)
51 PLN03118 Rab family protein; P 100.0 1.3E-32 2.8E-37 205.4 25.3 173 5-178 6-180 (211)
52 cd04113 Rab4 Rab4 subfamily. 100.0 3.3E-33 7.2E-38 200.1 21.2 160 14-173 1-160 (161)
53 smart00175 RAB Rab subfamily o 100.0 5.5E-33 1.2E-37 199.4 22.1 163 14-176 1-163 (164)
54 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.3E-33 5.1E-38 203.4 20.2 160 13-174 1-174 (175)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 5E-33 1.1E-37 199.8 20.6 160 14-174 2-162 (164)
56 cd04106 Rab23_lke Rab23-like s 100.0 7.5E-33 1.6E-37 198.4 21.2 159 14-173 1-161 (162)
57 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.3E-32 2.8E-37 198.7 22.3 162 15-176 2-166 (170)
58 cd04124 RabL2 RabL2 subfamily. 100.0 9E-33 2E-37 197.9 21.3 160 14-177 1-160 (161)
59 cd01861 Rab6 Rab6 subfamily. 100.0 1.5E-32 3.2E-37 196.7 21.4 160 14-173 1-160 (161)
60 cd04116 Rab9 Rab9 subfamily. 100.0 2.4E-32 5.3E-37 197.3 22.1 163 10-173 2-169 (170)
61 cd00877 Ran Ran (Ras-related n 100.0 1.6E-32 3.5E-37 197.5 20.9 160 14-176 1-160 (166)
62 cd04176 Rap2 Rap2 subgroup. T 100.0 1.2E-32 2.6E-37 197.6 20.2 160 14-174 2-162 (163)
63 cd01860 Rab5_related Rab5-rela 100.0 3.5E-32 7.7E-37 195.1 22.3 162 13-174 1-162 (163)
64 smart00173 RAS Ras subfamily o 100.0 1.8E-32 3.8E-37 196.9 20.7 161 14-175 1-162 (164)
65 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.9E-32 6.4E-37 196.9 21.7 162 13-174 2-168 (170)
66 KOG0097 GTPase Rab14, small G 100.0 2.8E-32 6.1E-37 181.6 19.1 182 8-189 6-187 (215)
67 cd04140 ARHI_like ARHI subfami 100.0 2.6E-32 5.6E-37 196.3 20.6 159 14-173 2-163 (165)
68 cd01871 Rac1_like Rac1-like su 100.0 2.2E-32 4.8E-37 198.1 20.2 158 14-173 2-173 (174)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.5E-32 9.8E-37 194.2 21.3 160 13-174 1-161 (162)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.6E-32 1E-36 194.7 21.2 161 13-174 2-163 (164)
71 smart00176 RAN Ran (Ras-relate 100.0 4.1E-32 8.8E-37 200.0 21.1 156 19-177 1-156 (200)
72 cd04134 Rho3 Rho3 subfamily. 100.0 2.5E-32 5.4E-37 200.5 19.8 161 15-177 2-176 (189)
73 cd04142 RRP22 RRP22 subfamily. 100.0 4.9E-32 1.1E-36 199.8 20.2 162 14-175 1-174 (198)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.8E-31 3.8E-36 191.7 21.7 160 14-174 1-163 (164)
75 cd04123 Rab21 Rab21 subfamily. 100.0 2.2E-31 4.7E-36 190.6 22.1 161 14-174 1-161 (162)
76 cd01862 Rab7 Rab7 subfamily. 100.0 3.3E-31 7.1E-36 191.7 22.1 165 14-178 1-170 (172)
77 cd01863 Rab18 Rab18 subfamily. 100.0 3.9E-31 8.4E-36 189.4 21.2 159 14-173 1-160 (161)
78 cd04114 Rab30 Rab30 subfamily. 100.0 9.3E-31 2E-35 188.8 22.8 164 11-174 5-168 (169)
79 cd01873 RhoBTB RhoBTB subfamil 100.0 1.8E-31 4E-36 196.1 19.3 158 13-173 2-194 (195)
80 cd04177 RSR1 RSR1 subgroup. R 100.0 5.1E-31 1.1E-35 190.1 20.9 161 14-175 2-164 (168)
81 smart00174 RHO Rho (Ras homolo 100.0 2.3E-31 5E-36 192.9 18.8 158 16-175 1-172 (174)
82 cd01892 Miro2 Miro2 subfamily. 100.0 2.8E-31 6.1E-36 191.5 19.1 163 11-175 2-166 (169)
83 cd04143 Rhes_like Rhes_like su 100.0 4.7E-31 1E-35 200.3 21.0 160 14-174 1-170 (247)
84 cd04148 RGK RGK subfamily. Th 100.0 6.3E-31 1.4E-35 197.2 21.3 166 14-181 1-169 (221)
85 KOG0081 GTPase Rab27, small G 100.0 7.4E-33 1.6E-37 187.7 9.1 174 8-181 4-187 (219)
86 cd00154 Rab Rab family. Rab G 100.0 1.1E-30 2.3E-35 186.0 20.9 158 14-171 1-158 (159)
87 cd04103 Centaurin_gamma Centau 100.0 6.2E-31 1.3E-35 187.5 19.0 153 14-173 1-157 (158)
88 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.3E-31 2E-35 189.6 19.8 157 14-172 1-171 (173)
89 cd04146 RERG_RasL11_like RERG/ 100.0 4.9E-31 1.1E-35 189.6 18.2 160 15-175 1-164 (165)
90 KOG0083 GTPase Rab26/Rab37, sm 100.0 5.6E-33 1.2E-37 183.1 7.2 162 17-178 1-163 (192)
91 cd04135 Tc10 TC10 subfamily. 100.0 1.9E-30 4.1E-35 188.1 19.5 159 14-174 1-173 (174)
92 cd04139 RalA_RalB RalA/RalB su 100.0 5.7E-30 1.2E-34 183.6 21.4 161 14-175 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 1.1E-29 2.4E-34 181.4 20.0 158 15-173 1-159 (160)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.4E-29 3.1E-34 184.9 20.0 167 13-182 3-177 (183)
95 cd04149 Arf6 Arf6 subfamily. 100.0 8.7E-30 1.9E-34 183.5 17.7 154 12-172 8-167 (168)
96 cd04137 RheB Rheb (Ras Homolog 100.0 5.3E-29 1.1E-33 181.5 21.8 164 14-178 2-166 (180)
97 cd01870 RhoA_like RhoA-like su 100.0 3.1E-29 6.7E-34 181.9 20.3 159 14-174 2-174 (175)
98 smart00177 ARF ARF-like small 100.0 2.1E-29 4.5E-34 182.8 18.8 157 11-174 11-173 (175)
99 PLN00223 ADP-ribosylation fact 100.0 4.2E-29 9.1E-34 182.0 19.4 158 11-175 15-178 (181)
100 KOG0395 Ras-related GTPase [Ge 100.0 3.9E-29 8.5E-34 182.8 19.3 166 12-178 2-168 (196)
101 cd04158 ARD1 ARD1 subfamily. 100.0 4.4E-29 9.5E-34 180.2 19.2 155 15-176 1-162 (169)
102 cd04129 Rho2 Rho2 subfamily. 100.0 6E-29 1.3E-33 182.3 20.1 163 14-178 2-176 (187)
103 cd04147 Ras_dva Ras-dva subfam 100.0 7E-29 1.5E-33 183.5 20.4 160 15-175 1-163 (198)
104 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.3E-30 9.3E-35 184.5 13.3 153 15-172 1-163 (164)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.2E-29 9E-34 178.5 17.9 152 14-172 1-158 (159)
106 PTZ00132 GTP-binding nuclear p 100.0 2.5E-28 5.5E-33 182.8 22.1 167 7-176 3-169 (215)
107 PTZ00133 ADP-ribosylation fact 100.0 2E-28 4.3E-33 178.6 19.4 159 12-177 16-180 (182)
108 cd04154 Arl2 Arl2 subfamily. 100.0 1.5E-28 3.3E-33 178.0 17.9 157 9-172 10-172 (173)
109 cd00157 Rho Rho (Ras homology) 100.0 2.9E-28 6.2E-33 176.1 19.2 157 14-172 1-170 (171)
110 cd01893 Miro1 Miro1 subfamily. 100.0 2.4E-28 5.2E-33 175.8 18.4 160 14-176 1-165 (166)
111 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.8E-28 8.2E-33 178.8 18.9 147 14-160 1-175 (202)
112 cd04157 Arl6 Arl6 subfamily. 100.0 4.6E-28 9.9E-33 173.5 16.6 152 15-172 1-161 (162)
113 PTZ00099 rab6; Provisional 100.0 2.2E-27 4.9E-32 171.7 19.3 143 36-178 3-145 (176)
114 KOG0393 Ras-related small GTPa 100.0 9.9E-29 2.1E-33 177.0 12.0 166 11-178 2-182 (198)
115 PLN00023 GTP-binding protein; 100.0 7E-27 1.5E-31 180.1 21.6 191 9-199 17-255 (334)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.5E-27 5.4E-32 171.8 18.0 153 13-172 15-173 (174)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 9.5E-28 2.1E-32 172.8 14.7 151 15-172 1-166 (167)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.4E-27 5.3E-32 170.6 16.6 152 15-172 1-166 (167)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.4E-27 5.2E-32 169.5 16.0 152 15-172 1-159 (160)
120 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.7E-27 5.8E-32 168.9 14.9 151 15-172 1-157 (158)
121 cd00879 Sar1 Sar1 subfamily. 100.0 8.9E-27 1.9E-31 171.2 17.8 155 12-173 18-189 (190)
122 cd04151 Arl1 Arl1 subfamily. 100.0 1.8E-26 3.9E-31 164.7 17.9 151 15-172 1-157 (158)
123 PF00025 Arf: ADP-ribosylation 100.0 2.7E-26 5.8E-31 166.3 18.8 158 10-174 11-175 (175)
124 smart00178 SAR Sar1p-like memb 99.9 2.9E-26 6.2E-31 167.6 18.3 156 11-173 15-183 (184)
125 KOG4252 GTP-binding protein [S 99.9 4.2E-28 9.1E-33 167.8 5.7 175 5-180 12-186 (246)
126 cd01890 LepA LepA subfamily. 99.9 1.3E-25 2.7E-30 163.5 17.6 154 15-174 2-176 (179)
127 cd04159 Arl10_like Arl10-like 99.9 1.3E-25 2.9E-30 159.8 17.3 151 16-172 2-158 (159)
128 cd01897 NOG NOG1 is a nucleola 99.9 9.2E-26 2E-30 162.5 16.4 156 14-174 1-167 (168)
129 KOG0073 GTP-binding ADP-ribosy 99.9 4.3E-25 9.3E-30 150.7 16.8 164 8-178 11-181 (185)
130 PRK12299 obgE GTPase CgtA; Rev 99.9 3.7E-25 7.9E-30 174.3 19.0 165 13-178 158-331 (335)
131 cd01898 Obg Obg subfamily. Th 99.9 1.3E-25 2.7E-30 162.1 15.0 157 15-173 2-169 (170)
132 cd01878 HflX HflX subfamily. 99.9 1.9E-25 4E-30 166.0 16.0 158 10-174 38-204 (204)
133 cd04155 Arl3 Arl3 subfamily. 99.9 4.6E-25 9.9E-30 159.7 16.7 157 9-172 10-172 (173)
134 TIGR00231 small_GTP small GTP- 99.9 1.4E-24 3.1E-29 154.1 18.6 157 13-170 1-159 (161)
135 COG1100 GTPase SAR1 and relate 99.9 5.6E-24 1.2E-28 159.7 20.9 170 13-182 5-192 (219)
136 cd04171 SelB SelB subfamily. 99.9 1.7E-24 3.7E-29 155.2 16.9 151 15-172 2-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 1.1E-24 2.4E-29 152.7 13.5 134 15-171 2-141 (142)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-23 2.6E-28 151.4 16.8 157 15-175 2-166 (168)
139 cd00882 Ras_like_GTPase Ras-li 99.9 2.3E-23 5E-28 146.7 17.9 153 18-171 1-156 (157)
140 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-23 2.5E-28 167.1 17.9 155 11-173 187-350 (351)
141 TIGR02729 Obg_CgtA Obg family 99.9 1.6E-23 3.5E-28 164.8 17.8 160 13-174 157-328 (329)
142 PRK04213 GTP-binding protein; 99.9 1.9E-24 4.2E-29 160.2 11.4 153 11-176 7-193 (201)
143 cd01879 FeoB Ferrous iron tran 99.9 2.1E-23 4.5E-28 148.7 15.8 148 18-174 1-156 (158)
144 KOG0075 GTP-binding ADP-ribosy 99.9 9.1E-24 2E-28 141.7 11.8 155 13-176 20-183 (186)
145 TIGR00436 era GTP-binding prot 99.9 2.9E-23 6.2E-28 160.3 16.4 154 15-175 2-164 (270)
146 KOG0070 GTP-binding ADP-ribosy 99.9 2.1E-23 4.6E-28 146.0 14.0 159 11-176 15-179 (181)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-23 3.8E-28 154.2 14.4 149 14-166 3-173 (194)
148 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-23 3E-28 146.9 12.9 148 14-170 1-156 (156)
149 cd01881 Obg_like The Obg-like 99.9 2.6E-23 5.5E-28 150.8 13.1 155 18-173 1-175 (176)
150 KOG3883 Ras family small GTPas 99.9 1.4E-22 3.1E-27 136.9 15.3 172 12-184 8-184 (198)
151 cd01889 SelB_euk SelB subfamil 99.9 1.2E-22 2.6E-27 149.5 14.6 159 14-176 1-187 (192)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.7E-22 8E-27 141.9 16.6 146 14-174 2-156 (157)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.7E-22 8E-27 162.8 18.7 155 10-178 200-363 (442)
154 PRK12297 obgE GTPase CgtA; Rev 99.9 7.1E-22 1.5E-26 159.4 20.0 160 14-178 159-330 (424)
155 PF08477 Miro: Miro-like prote 99.9 7.8E-23 1.7E-27 139.1 12.4 114 15-129 1-119 (119)
156 cd00881 GTP_translation_factor 99.9 1.9E-22 4.1E-27 147.8 15.3 154 15-174 1-186 (189)
157 PRK03003 GTP-binding protein D 99.9 3.4E-22 7.4E-27 165.3 17.7 162 12-179 210-386 (472)
158 PRK15494 era GTPase Era; Provi 99.9 2.3E-22 4.9E-27 159.5 15.9 156 11-176 50-217 (339)
159 PRK15467 ethanolamine utilizat 99.9 2.7E-22 5.7E-27 142.9 14.7 142 15-178 3-150 (158)
160 TIGR01393 lepA GTP-binding pro 99.9 5.1E-22 1.1E-26 167.2 18.6 159 13-177 3-182 (595)
161 PRK12296 obgE GTPase CgtA; Rev 99.9 5.6E-22 1.2E-26 162.0 18.2 165 13-180 159-345 (500)
162 PRK11058 GTPase HflX; Provisio 99.9 3.1E-22 6.8E-27 162.3 16.5 162 13-180 197-367 (426)
163 KOG1673 Ras GTPases [General f 99.9 9.3E-23 2E-27 138.1 11.0 167 10-177 17-188 (205)
164 PRK05291 trmE tRNA modificatio 99.9 4E-22 8.7E-27 163.4 16.2 149 12-176 214-371 (449)
165 cd01894 EngA1 EngA1 subfamily. 99.9 3.7E-22 8E-27 142.0 13.0 146 17-173 1-156 (157)
166 PRK03003 GTP-binding protein D 99.9 6.4E-22 1.4E-26 163.7 15.8 155 12-176 37-200 (472)
167 TIGR00487 IF-2 translation ini 99.9 2.2E-21 4.9E-26 162.7 18.8 153 12-172 86-247 (587)
168 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-21 2.5E-26 145.3 14.8 160 14-175 1-199 (203)
169 TIGR03594 GTPase_EngA ribosome 99.9 2.1E-21 4.5E-26 159.5 17.3 161 11-178 170-347 (429)
170 PRK12298 obgE GTPase CgtA; Rev 99.9 5E-21 1.1E-25 153.7 18.6 162 14-177 160-335 (390)
171 PRK00454 engB GTP-binding prot 99.9 5.5E-21 1.2E-25 141.0 17.4 159 9-174 20-193 (196)
172 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-20 2.4E-25 136.4 17.9 155 13-173 2-173 (174)
173 cd04163 Era Era subfamily. Er 99.9 5.1E-21 1.1E-25 137.1 15.8 156 13-173 3-167 (168)
174 TIGR00475 selB selenocysteine- 99.9 6.1E-21 1.3E-25 160.7 18.2 156 14-178 1-169 (581)
175 TIGR03598 GTPase_YsxC ribosome 99.9 4.1E-21 8.8E-26 139.8 15.0 151 7-164 12-179 (179)
176 KOG0071 GTP-binding ADP-ribosy 99.9 8.8E-21 1.9E-25 126.4 14.9 156 12-174 16-177 (180)
177 PRK00089 era GTPase Era; Revie 99.9 5.8E-21 1.3E-25 149.3 16.3 158 13-175 5-171 (292)
178 CHL00189 infB translation init 99.9 8.1E-21 1.8E-25 161.6 18.1 157 11-174 242-409 (742)
179 PF00009 GTP_EFTU: Elongation 99.9 5.9E-21 1.3E-25 140.0 14.3 159 13-175 3-187 (188)
180 COG1159 Era GTPase [General fu 99.9 5.8E-21 1.3E-25 143.8 14.3 162 12-178 5-175 (298)
181 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 7.6E-22 1.7E-26 138.1 8.7 162 11-175 8-169 (216)
182 PRK05306 infB translation init 99.9 2.4E-20 5.1E-25 160.1 18.8 155 10-173 287-450 (787)
183 PRK05433 GTP-binding protein L 99.9 3.6E-20 7.7E-25 156.3 18.4 160 12-177 6-186 (600)
184 TIGR00437 feoB ferrous iron tr 99.9 1.6E-20 3.4E-25 158.3 15.3 146 20-174 1-154 (591)
185 KOG0076 GTP-binding ADP-ribosy 99.9 4.9E-21 1.1E-25 132.2 9.7 159 13-177 17-189 (197)
186 cd04105 SR_beta Signal recogni 99.9 7.4E-20 1.6E-24 135.5 16.8 117 15-132 2-123 (203)
187 cd00880 Era_like Era (E. coli 99.9 2.6E-20 5.5E-25 132.3 13.4 151 18-173 1-162 (163)
188 TIGR03594 GTPase_EngA ribosome 99.8 7.6E-20 1.7E-24 150.3 17.8 151 15-176 1-161 (429)
189 PRK00093 GTP-binding protein D 99.8 8.4E-20 1.8E-24 150.3 17.8 146 14-172 2-159 (435)
190 PRK00093 GTP-binding protein D 99.8 5.7E-20 1.2E-24 151.2 16.4 161 11-178 171-347 (435)
191 KOG4423 GTP-binding protein-li 99.8 6E-23 1.3E-27 143.2 -1.0 195 6-206 18-219 (229)
192 cd01896 DRG The developmentall 99.8 3.1E-19 6.6E-24 134.7 18.4 150 15-174 2-225 (233)
193 PRK09518 bifunctional cytidyla 99.8 2.5E-19 5.4E-24 154.8 19.5 159 12-178 449-624 (712)
194 COG2229 Predicted GTPase [Gene 99.8 3.9E-19 8.4E-24 124.5 16.8 155 11-173 8-176 (187)
195 PRK09554 feoB ferrous iron tra 99.8 2.7E-19 5.8E-24 154.3 18.7 153 13-174 3-167 (772)
196 PRK09518 bifunctional cytidyla 99.8 2.5E-19 5.4E-24 154.7 17.6 154 12-176 274-437 (712)
197 PF10662 PduV-EutP: Ethanolami 99.8 2.3E-19 4.9E-24 123.0 13.6 135 15-171 3-142 (143)
198 TIGR00491 aIF-2 translation in 99.8 3.6E-19 7.8E-24 149.3 17.4 156 14-176 5-217 (590)
199 PRK10218 GTP-binding protein; 99.8 1.1E-18 2.3E-23 146.9 18.2 161 13-177 5-197 (607)
200 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.8E-18 3.8E-23 127.0 16.9 148 13-164 2-172 (195)
201 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.7E-19 5.9E-24 133.1 12.7 147 15-166 1-185 (208)
202 PRK12317 elongation factor 1-a 99.8 2.2E-19 4.7E-24 147.1 13.3 156 11-168 4-198 (425)
203 TIGR00483 EF-1_alpha translati 99.8 3.9E-19 8.4E-24 145.6 14.7 155 10-168 4-200 (426)
204 cd01876 YihA_EngB The YihA (En 99.8 8E-19 1.7E-23 126.0 14.7 150 15-173 1-169 (170)
205 TIGR01394 TypA_BipA GTP-bindin 99.8 4.9E-19 1.1E-23 149.0 15.5 159 15-177 3-193 (594)
206 COG2262 HflX GTPases [General 99.8 1.2E-18 2.5E-23 136.4 16.3 174 7-187 186-368 (411)
207 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.5E-23 137.6 15.6 151 14-175 4-165 (444)
208 COG0218 Predicted GTPase [Gene 99.8 3.7E-18 8E-23 122.2 15.9 162 7-176 18-198 (200)
209 KOG0074 GTP-binding ADP-ribosy 99.8 5.5E-19 1.2E-23 118.1 10.8 153 11-172 15-176 (185)
210 PRK10512 selenocysteinyl-tRNA- 99.8 2.9E-18 6.3E-23 145.0 17.9 157 15-176 2-167 (614)
211 TIGR03680 eif2g_arch translati 99.8 9.3E-19 2E-23 142.3 14.3 163 11-175 2-196 (406)
212 COG1160 Predicted GTPases [Gen 99.8 1.9E-18 4E-23 137.2 15.5 162 12-179 177-355 (444)
213 PRK04000 translation initiatio 99.8 1.6E-18 3.6E-23 140.8 15.1 164 9-175 5-201 (411)
214 PRK04004 translation initiatio 99.8 7E-18 1.5E-22 142.0 18.6 157 13-176 6-219 (586)
215 cd04167 Snu114p Snu114p subfam 99.8 2.1E-18 4.5E-23 128.9 13.6 113 15-131 2-136 (213)
216 COG0486 ThdF Predicted GTPase 99.8 3E-18 6.5E-23 136.4 15.1 156 10-177 214-378 (454)
217 cd04168 TetM_like Tet(M)-like 99.8 7.4E-18 1.6E-22 127.4 16.5 113 15-131 1-129 (237)
218 KOG0072 GTP-binding ADP-ribosy 99.8 1.3E-19 2.8E-24 121.4 6.0 160 10-176 15-180 (182)
219 KOG1423 Ras-like GTPase ERA [C 99.8 5.1E-18 1.1E-22 127.7 15.1 168 5-176 64-272 (379)
220 PRK12736 elongation factor Tu; 99.8 8.3E-18 1.8E-22 136.2 16.7 161 10-174 9-200 (394)
221 cd01883 EF1_alpha Eukaryotic e 99.8 5E-18 1.1E-22 127.3 12.9 147 15-164 1-194 (219)
222 TIGR00485 EF-Tu translation el 99.8 1.8E-17 3.9E-22 134.4 16.2 148 10-161 9-179 (394)
223 PRK12735 elongation factor Tu; 99.8 3.1E-17 6.7E-22 133.0 16.5 161 10-174 9-202 (396)
224 CHL00071 tufA elongation facto 99.8 4.6E-17 1E-21 132.5 17.2 158 1-163 1-181 (409)
225 cd01885 EF2 EF2 (for archaea a 99.8 2.4E-17 5.1E-22 123.1 14.1 113 15-131 2-138 (222)
226 KOG1489 Predicted GTP-binding 99.8 2.5E-17 5.5E-22 124.6 13.4 157 13-173 196-365 (366)
227 COG0370 FeoB Fe2+ transport sy 99.8 4.1E-17 8.9E-22 135.2 15.8 156 14-178 4-167 (653)
228 COG1084 Predicted GTPase [Gene 99.8 5.3E-17 1.1E-21 123.7 15.1 158 12-175 167-336 (346)
229 KOG1707 Predicted Ras related/ 99.8 7.3E-18 1.6E-22 136.5 10.4 168 9-178 5-178 (625)
230 cd04169 RF3 RF3 subfamily. Pe 99.7 1.3E-16 2.9E-21 122.5 16.4 115 14-132 3-137 (267)
231 cd04165 GTPBP1_like GTPBP1-lik 99.7 8.6E-17 1.9E-21 120.5 14.9 153 15-171 1-219 (224)
232 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.1E-17 4.5E-22 123.4 11.0 166 15-183 1-184 (232)
233 cd01850 CDC_Septin CDC/Septin. 99.7 1E-16 2.2E-21 123.8 15.1 143 12-159 3-186 (276)
234 cd04104 p47_IIGP_like p47 (47- 99.7 2.5E-16 5.5E-21 116.2 15.4 159 14-180 2-189 (197)
235 COG0532 InfB Translation initi 99.7 4.6E-16 1E-20 125.7 17.4 157 14-177 6-172 (509)
236 PRK05124 cysN sulfate adenylyl 99.7 1.3E-16 2.8E-21 131.7 14.4 154 9-167 23-217 (474)
237 cd01886 EF-G Elongation factor 99.7 1.4E-16 3.1E-21 122.5 12.9 112 15-132 1-130 (270)
238 PLN03126 Elongation factor Tu; 99.7 4.6E-16 9.9E-21 128.1 16.5 150 9-162 77-249 (478)
239 cd04170 EF-G_bact Elongation f 99.7 6.8E-17 1.5E-21 124.8 10.7 147 15-169 1-167 (268)
240 COG0536 Obg Predicted GTPase [ 99.7 2.9E-16 6.2E-21 120.3 13.7 166 13-179 159-337 (369)
241 COG1163 DRG Predicted GTPase [ 99.7 6.2E-16 1.3E-20 117.6 15.4 158 11-178 61-292 (365)
242 TIGR02034 CysN sulfate adenyly 99.7 3.6E-16 7.7E-21 127.1 14.7 147 14-165 1-187 (406)
243 PRK00049 elongation factor Tu; 99.7 8.3E-16 1.8E-20 124.6 16.7 147 11-161 10-179 (396)
244 PRK00741 prfC peptide chain re 99.7 1.2E-15 2.7E-20 127.0 16.9 117 11-131 8-144 (526)
245 PRK13351 elongation factor G; 99.7 5.3E-16 1.1E-20 134.1 15.2 116 10-131 5-138 (687)
246 KOG0462 Elongation factor-type 99.7 4E-16 8.7E-21 125.7 13.0 166 11-180 58-240 (650)
247 PF01926 MMR_HSR1: 50S ribosom 99.7 1.8E-15 4E-20 102.2 14.1 106 15-127 1-116 (116)
248 PLN00043 elongation factor 1-a 99.7 7.1E-16 1.5E-20 126.4 14.2 151 11-165 5-203 (447)
249 cd01899 Ygr210 Ygr210 subfamil 99.7 9.8E-16 2.1E-20 120.0 14.2 81 16-96 1-110 (318)
250 KOG0077 Vesicle coat complex C 99.7 1.6E-16 3.4E-21 109.2 8.5 155 13-174 20-192 (193)
251 PRK05506 bifunctional sulfate 99.7 7.4E-16 1.6E-20 131.9 14.5 154 9-165 20-211 (632)
252 PLN03127 Elongation factor Tu; 99.7 2.7E-15 5.8E-20 122.9 16.8 161 10-174 58-251 (447)
253 COG3596 Predicted GTPase [Gene 99.7 4.3E-16 9.3E-21 116.2 10.4 163 10-175 36-222 (296)
254 PTZ00141 elongation factor 1- 99.7 3.3E-15 7.1E-20 122.5 15.8 152 11-165 5-203 (446)
255 KOG1145 Mitochondrial translat 99.7 3.5E-15 7.6E-20 120.4 15.4 159 12-178 152-319 (683)
256 PTZ00327 eukaryotic translatio 99.7 1.6E-15 3.4E-20 124.1 13.8 163 10-175 31-233 (460)
257 TIGR00503 prfC peptide chain r 99.7 5.5E-15 1.2E-19 123.2 16.5 117 11-131 9-145 (527)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.5E-15 1.4E-19 108.7 14.5 159 14-176 1-185 (196)
259 KOG1191 Mitochondrial GTPase [ 99.6 8.8E-16 1.9E-20 122.5 9.4 167 10-178 265-453 (531)
260 PRK12739 elongation factor G; 99.6 1.3E-14 2.9E-19 125.2 17.1 116 10-131 5-138 (691)
261 COG4917 EutP Ethanolamine util 99.6 5E-15 1.1E-19 97.2 9.8 136 15-172 3-143 (148)
262 COG0481 LepA Membrane GTPase L 99.6 8.5E-15 1.8E-19 116.5 13.0 161 12-179 8-190 (603)
263 PF09439 SRPRB: Signal recogni 99.6 1.2E-15 2.7E-20 109.2 7.6 115 14-132 4-126 (181)
264 KOG1490 GTP-binding protein CR 99.6 2.7E-15 5.9E-20 119.9 9.7 172 10-184 165-350 (620)
265 PRK09866 hypothetical protein; 99.6 8.5E-14 1.9E-18 115.6 18.4 108 63-172 231-350 (741)
266 TIGR00484 EF-G translation elo 99.6 2.5E-14 5.4E-19 123.6 15.6 117 10-132 7-141 (689)
267 PRK09602 translation-associate 99.6 9.7E-14 2.1E-18 112.0 16.9 83 14-96 2-113 (396)
268 PRK00007 elongation factor G; 99.6 1.1E-13 2.5E-18 119.5 17.7 116 10-131 7-140 (693)
269 PRK12740 elongation factor G; 99.6 1.2E-13 2.5E-18 119.4 17.0 107 19-131 1-125 (668)
270 COG5256 TEF1 Translation elong 99.6 8.6E-14 1.9E-18 109.4 13.0 157 10-167 4-203 (428)
271 KOG3905 Dynein light intermedi 99.5 2.9E-13 6.3E-18 103.2 13.6 181 12-195 51-311 (473)
272 cd00066 G-alpha G protein alph 99.5 6.1E-13 1.3E-17 104.9 15.7 118 61-178 160-314 (317)
273 TIGR00490 aEF-2 translation el 99.5 1.1E-13 2.5E-18 119.8 11.2 118 10-131 16-151 (720)
274 COG2895 CysN GTPases - Sulfate 99.5 3.9E-13 8.4E-18 103.5 12.2 151 10-165 3-193 (431)
275 cd01853 Toc34_like Toc34-like 99.5 5.6E-13 1.2E-17 101.3 13.0 122 8-132 26-163 (249)
276 KOG0090 Signal recognition par 99.5 6.3E-13 1.4E-17 95.6 12.2 113 14-131 39-158 (238)
277 KOG1707 Predicted Ras related/ 99.5 7.4E-13 1.6E-17 107.9 14.0 169 5-178 417-586 (625)
278 PF05783 DLIC: Dynein light in 99.5 1.1E-12 2.3E-17 107.4 14.6 185 11-198 23-289 (472)
279 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1E-12 2.2E-17 101.4 13.6 120 11-132 36-167 (313)
280 PTZ00258 GTP-binding protein; 99.5 1.2E-12 2.6E-17 104.7 14.1 86 11-96 19-126 (390)
281 smart00275 G_alpha G protein a 99.5 3.6E-12 7.9E-17 101.3 16.0 117 62-178 184-337 (342)
282 PRK14845 translation initiatio 99.5 5.4E-12 1.2E-16 111.6 18.1 144 26-176 474-674 (1049)
283 COG5257 GCD11 Translation init 99.5 2.8E-13 6.1E-18 103.1 8.7 166 11-178 8-205 (415)
284 KOG0461 Selenocysteine-specifi 99.5 2.3E-12 5.1E-17 99.1 13.5 164 10-178 4-196 (522)
285 PF04548 AIG1: AIG1 family; I 99.5 1.3E-12 2.7E-17 97.5 11.9 160 14-177 1-188 (212)
286 COG1217 TypA Predicted membran 99.5 2.3E-12 5E-17 102.6 13.3 163 13-179 5-199 (603)
287 PRK13768 GTPase; Provisional 99.4 1.2E-12 2.5E-17 100.1 10.6 110 63-175 98-247 (253)
288 TIGR00101 ureG urease accessor 99.4 4.9E-12 1.1E-16 93.2 13.5 102 62-174 92-195 (199)
289 KOG1144 Translation initiation 99.4 5.5E-13 1.2E-17 111.1 9.2 165 13-181 475-693 (1064)
290 smart00010 small_GTPase Small 99.4 1.1E-12 2.3E-17 89.4 9.0 114 14-164 1-115 (124)
291 PRK07560 elongation factor EF- 99.4 6.6E-12 1.4E-16 109.2 15.4 117 11-131 18-152 (731)
292 TIGR00157 ribosome small subun 99.4 8.3E-13 1.8E-17 100.4 8.7 96 73-172 24-120 (245)
293 PLN00116 translation elongatio 99.4 2.4E-12 5.3E-17 113.3 11.8 118 10-131 16-163 (843)
294 PF00735 Septin: Septin; Inte 99.4 1.1E-11 2.4E-16 95.8 13.9 141 12-157 3-183 (281)
295 cd01882 BMS1 Bms1. Bms1 is an 99.4 4.2E-11 9E-16 90.1 16.5 140 10-161 36-182 (225)
296 PRK09601 GTP-binding protein Y 99.4 2.7E-11 5.9E-16 96.0 15.8 83 14-96 3-107 (364)
297 TIGR02836 spore_IV_A stage IV 99.4 1.4E-11 3.1E-16 97.8 14.1 144 11-159 15-219 (492)
298 PTZ00416 elongation factor 2; 99.4 3.5E-12 7.7E-17 112.1 11.8 118 10-131 16-157 (836)
299 PRK09435 membrane ATPase/prote 99.4 7.3E-12 1.6E-16 98.5 12.4 107 62-179 149-264 (332)
300 COG0050 TufB GTPases - transla 99.4 7.8E-12 1.7E-16 94.3 10.8 168 9-181 8-199 (394)
301 TIGR00073 hypB hydrogenase acc 99.4 6.7E-12 1.4E-16 93.3 10.3 153 10-173 19-205 (207)
302 PF00350 Dynamin_N: Dynamin fa 99.4 9.3E-12 2E-16 89.5 10.7 63 63-128 102-168 (168)
303 KOG1532 GTPase XAB1, interacts 99.4 9E-12 2E-16 93.1 10.6 118 62-179 116-268 (366)
304 PF03029 ATP_bind_1: Conserved 99.4 1.4E-12 3E-17 98.5 6.4 112 63-174 92-236 (238)
305 KOG0082 G-protein alpha subuni 99.4 7.8E-11 1.7E-15 92.3 16.0 131 48-180 183-349 (354)
306 KOG1486 GTP-binding protein DR 99.3 5E-11 1.1E-15 88.1 13.5 159 11-178 60-291 (364)
307 PF05049 IIGP: Interferon-indu 99.3 1.8E-11 3.8E-16 97.1 10.3 162 12-180 34-223 (376)
308 COG0378 HypB Ni2+-binding GTPa 99.3 2.9E-11 6.2E-16 86.4 10.0 54 121-174 145-200 (202)
309 KOG0458 Elongation factor 1 al 99.3 4.8E-11 1E-15 97.5 11.9 156 9-166 173-373 (603)
310 TIGR00750 lao LAO/AO transport 99.3 4.7E-11 1E-15 93.6 11.3 104 61-175 126-238 (300)
311 COG5019 CDC3 Septin family pro 99.3 9.4E-11 2E-15 91.3 12.4 139 11-154 21-200 (373)
312 KOG3886 GTP-binding protein [S 99.3 7.1E-12 1.5E-16 91.3 5.7 146 14-161 5-165 (295)
313 KOG0410 Predicted GTP binding 99.3 1.6E-11 3.5E-16 93.8 7.0 164 8-183 173-349 (410)
314 TIGR00993 3a0901s04IAP86 chlor 99.2 2.9E-10 6.3E-15 95.2 14.1 122 9-132 114-250 (763)
315 COG0480 FusA Translation elong 99.2 3.2E-10 7E-15 96.9 14.2 118 10-131 7-141 (697)
316 smart00053 DYNc Dynamin, GTPas 99.2 3E-10 6.4E-15 85.6 12.3 118 12-132 25-206 (240)
317 KOG2655 Septin family protein 99.2 3.6E-10 7.7E-15 88.7 12.9 144 12-160 20-202 (366)
318 KOG1547 Septin CDC10 and relat 99.2 1.4E-10 3.1E-15 85.2 9.6 155 11-170 44-238 (336)
319 COG3276 SelB Selenocysteine-sp 99.2 3.1E-10 6.6E-15 90.3 12.2 155 15-175 2-162 (447)
320 COG1703 ArgK Putative periplas 99.2 5.9E-10 1.3E-14 84.7 12.1 161 12-183 50-262 (323)
321 PF03308 ArgK: ArgK protein; 99.2 6.2E-11 1.3E-15 88.7 6.5 157 12-180 28-235 (266)
322 KOG1954 Endocytosis/signaling 99.2 9.8E-10 2.1E-14 85.6 12.4 124 6-132 51-225 (532)
323 KOG0705 GTPase-activating prot 99.1 3.5E-10 7.6E-15 91.9 10.0 167 10-183 27-197 (749)
324 cd01900 YchF YchF subfamily. 99.1 4.8E-10 1E-14 86.2 10.0 81 16-96 1-103 (274)
325 PRK10463 hydrogenase nickel in 99.1 1.1E-10 2.5E-15 89.6 6.3 55 119-173 231-287 (290)
326 COG4108 PrfC Peptide chain rel 99.1 1E-09 2.2E-14 87.2 11.3 114 15-132 14-147 (528)
327 COG0012 Predicted GTPase, prob 99.1 2.9E-09 6.3E-14 83.6 13.4 84 13-96 2-108 (372)
328 KOG0468 U5 snRNP-specific prot 99.1 1.2E-09 2.5E-14 90.8 11.2 117 10-130 125-261 (971)
329 PF00503 G-alpha: G-protein al 99.1 4.7E-09 1E-13 85.4 14.3 125 48-174 223-389 (389)
330 KOG3887 Predicted small GTPase 99.0 1.6E-09 3.5E-14 79.8 9.0 167 12-181 26-208 (347)
331 cd01855 YqeH YqeH. YqeH is an 99.0 2.6E-09 5.6E-14 78.4 10.0 95 74-175 23-125 (190)
332 cd01859 MJ1464 MJ1464. This f 99.0 2E-09 4.3E-14 76.5 8.3 95 75-175 2-96 (156)
333 PRK12289 GTPase RsgA; Reviewed 98.9 4.9E-09 1.1E-13 83.5 8.9 92 77-173 81-173 (352)
334 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5.8E-09 1.3E-13 81.3 8.6 88 80-172 73-161 (287)
335 cd04178 Nucleostemin_like Nucl 98.9 2.6E-09 5.6E-14 76.9 6.0 57 11-71 115-171 (172)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.5E-09 7.6E-14 73.9 6.2 54 15-72 85-138 (141)
337 KOG1487 GTP-binding protein DR 98.9 6.8E-09 1.5E-13 77.3 7.8 155 13-177 59-283 (358)
338 PRK00098 GTPase RsgA; Reviewed 98.9 9.9E-09 2.2E-13 80.4 8.3 86 82-171 77-163 (298)
339 COG5258 GTPBP1 GTPase [General 98.9 8.1E-08 1.8E-12 75.5 12.9 154 8-166 112-330 (527)
340 cd01858 NGP_1 NGP-1. Autoanti 98.9 9E-09 2E-13 73.2 7.0 56 12-71 101-156 (157)
341 PRK12288 GTPase RsgA; Reviewed 98.9 2E-08 4.3E-13 80.0 9.5 89 82-173 117-206 (347)
342 KOG0447 Dynamin-like GTP bindi 98.8 2.7E-07 5.9E-12 75.7 15.8 167 9-178 304-543 (980)
343 KOG2486 Predicted GTPase [Gene 98.8 1.6E-08 3.6E-13 76.1 7.3 157 9-172 132-313 (320)
344 KOG0460 Mitochondrial translat 98.8 4.1E-08 9E-13 75.9 9.3 145 11-158 52-218 (449)
345 TIGR03597 GTPase_YqeH ribosome 98.8 4E-08 8.6E-13 79.0 9.7 95 72-173 50-151 (360)
346 cd01856 YlqF YlqF. Proteins o 98.8 3E-08 6.4E-13 71.5 6.9 58 11-72 113-170 (171)
347 COG5192 BMS1 GTP-binding prote 98.7 2.8E-07 6.1E-12 75.9 12.7 141 7-159 63-210 (1077)
348 KOG0466 Translation initiation 98.7 9.1E-09 2E-13 78.4 3.6 165 10-176 35-242 (466)
349 KOG0448 Mitofusin 1 GTPase, in 98.7 4.6E-07 1E-11 76.0 13.6 144 11-158 107-309 (749)
350 KOG1143 Predicted translation 98.7 1.6E-07 3.6E-12 73.6 10.3 157 6-166 160-379 (591)
351 cd01855 YqeH YqeH. YqeH is an 98.7 3.3E-08 7.1E-13 72.6 6.0 55 14-71 128-189 (190)
352 TIGR00092 GTP-binding protein 98.7 1.7E-07 3.8E-12 74.6 10.3 83 14-96 3-108 (368)
353 KOG0467 Translation elongation 98.7 8.9E-08 1.9E-12 80.9 8.9 120 7-130 3-136 (887)
354 TIGR03596 GTPase_YlqF ribosome 98.7 5.6E-08 1.2E-12 75.5 7.3 58 11-72 116-173 (276)
355 KOG3859 Septins (P-loop GTPase 98.7 8.4E-08 1.8E-12 72.3 7.7 116 10-130 39-188 (406)
356 cd01858 NGP_1 NGP-1. Autoanti 98.7 1E-07 2.3E-12 67.7 7.9 89 82-175 5-95 (157)
357 COG1618 Predicted nucleotide k 98.7 4.1E-06 9E-11 58.4 15.2 145 12-174 4-175 (179)
358 cd01859 MJ1464 MJ1464. This f 98.7 7.4E-08 1.6E-12 68.4 7.0 56 12-71 100-155 (156)
359 PRK09563 rbgA GTPase YlqF; Rev 98.7 8.5E-08 1.8E-12 74.9 7.9 58 11-72 119-176 (287)
360 COG1161 Predicted GTPases [Gen 98.7 5.2E-08 1.1E-12 77.1 6.3 57 12-72 131-187 (322)
361 cd01856 YlqF YlqF. Proteins o 98.6 2E-07 4.3E-12 67.2 8.4 100 69-176 2-102 (171)
362 KOG1491 Predicted GTP-binding 98.6 1E-07 2.2E-12 73.7 6.7 86 11-96 18-125 (391)
363 KOG0085 G protein subunit Galp 98.6 8.2E-08 1.8E-12 70.6 5.4 119 60-178 197-352 (359)
364 cd01849 YlqF_related_GTPase Yl 98.6 3.9E-07 8.5E-12 64.6 8.4 86 87-176 1-86 (155)
365 KOG0464 Elongation factor G [T 98.6 6.7E-08 1.4E-12 76.7 4.7 118 11-132 35-168 (753)
366 TIGR03348 VI_IcmF type VI secr 98.6 7.4E-07 1.6E-11 81.7 12.0 112 16-132 114-257 (1169)
367 KOG0099 G protein subunit Galp 98.6 6E-07 1.3E-11 67.3 9.1 117 62-178 202-372 (379)
368 PF09547 Spore_IV_A: Stage IV 98.6 2.5E-06 5.5E-11 68.4 13.2 143 12-159 16-219 (492)
369 PF03193 DUF258: Protein of un 98.5 9.8E-08 2.1E-12 67.3 4.0 58 15-75 37-100 (161)
370 cd01849 YlqF_related_GTPase Yl 98.5 3E-07 6.4E-12 65.2 6.1 56 11-71 98-154 (155)
371 PRK10416 signal recognition pa 98.5 2E-06 4.3E-11 67.9 10.8 143 13-167 114-302 (318)
372 TIGR03596 GTPase_YlqF ribosome 98.5 1.4E-06 3E-11 67.7 9.6 102 69-178 4-106 (276)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 7E-07 1.5E-11 62.3 7.1 77 80-162 6-84 (141)
374 cd03112 CobW_like The function 98.5 1.2E-06 2.6E-11 62.3 8.2 63 62-130 87-158 (158)
375 PRK12288 GTPase RsgA; Reviewed 98.4 4.1E-07 8.9E-12 72.6 5.9 58 16-76 208-271 (347)
376 cd01851 GBP Guanylate-binding 98.4 2.9E-06 6.3E-11 63.8 10.1 86 11-97 5-103 (224)
377 KOG1424 Predicted GTP-binding 98.4 3.8E-07 8.2E-12 74.2 5.6 57 11-71 312-368 (562)
378 PRK14974 cell division protein 98.4 2.8E-06 6E-11 67.4 10.2 95 62-168 223-323 (336)
379 PRK01889 GTPase RsgA; Reviewed 98.4 1.8E-06 3.8E-11 69.4 8.3 84 82-171 109-193 (356)
380 PRK13796 GTPase YqeH; Provisio 98.4 3.8E-06 8.2E-11 67.8 10.2 93 73-173 57-157 (365)
381 PRK12289 GTPase RsgA; Reviewed 98.4 6.5E-07 1.4E-11 71.5 5.6 56 16-74 175-236 (352)
382 TIGR00064 ftsY signal recognit 98.4 1.1E-05 2.5E-10 62.4 12.0 94 62-167 155-260 (272)
383 KOG0463 GTP-binding protein GP 98.4 2.5E-06 5.4E-11 67.2 8.3 151 12-166 132-349 (641)
384 PRK13796 GTPase YqeH; Provisio 98.4 7.8E-07 1.7E-11 71.7 5.6 56 14-72 161-220 (365)
385 TIGR03597 GTPase_YqeH ribosome 98.3 1.2E-06 2.7E-11 70.5 6.6 56 14-72 155-214 (360)
386 PRK09563 rbgA GTPase YlqF; Rev 98.3 3.6E-06 7.7E-11 65.8 9.0 101 69-177 7-108 (287)
387 TIGR01425 SRP54_euk signal rec 98.3 7.8E-06 1.7E-10 66.7 10.8 86 61-156 182-273 (429)
388 TIGR00157 ribosome small subun 98.3 1.3E-06 2.9E-11 66.6 6.0 57 15-75 122-184 (245)
389 KOG4273 Uncharacterized conser 98.3 1.9E-05 4.1E-10 59.0 11.5 180 13-197 4-243 (418)
390 KOG0465 Mitochondrial elongati 98.3 3E-06 6.5E-11 70.4 7.2 117 12-132 38-170 (721)
391 COG1162 Predicted GTPases [Gen 98.3 1.8E-06 3.9E-11 66.5 5.4 58 15-75 166-229 (301)
392 PRK14722 flhF flagellar biosyn 98.2 1.4E-05 3.1E-10 64.1 9.5 140 14-157 138-316 (374)
393 PRK13695 putative NTPase; Prov 98.2 8.9E-05 1.9E-09 53.6 12.7 48 117-174 125-172 (174)
394 cd03115 SRP The signal recogni 98.2 2.6E-05 5.6E-10 56.3 9.8 83 62-154 83-171 (173)
395 PF00448 SRP54: SRP54-type pro 98.2 3.4E-05 7.3E-10 56.8 10.4 86 62-157 84-175 (196)
396 PRK12727 flagellar biosynthesi 98.2 4.5E-05 9.7E-10 63.6 11.7 135 13-157 350-519 (559)
397 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4.7E-06 1E-10 65.1 5.8 59 14-75 162-226 (287)
398 COG3523 IcmF Type VI protein s 98.1 1.6E-05 3.4E-10 71.9 9.5 114 17-132 129-270 (1188)
399 KOG2484 GTPase [General functi 98.1 2.9E-06 6.3E-11 67.2 4.2 66 3-72 242-307 (435)
400 COG1162 Predicted GTPases [Gen 98.1 2.6E-05 5.7E-10 60.3 9.1 94 77-173 71-165 (301)
401 PRK00098 GTPase RsgA; Reviewed 98.1 6.9E-06 1.5E-10 64.5 5.9 57 15-74 166-228 (298)
402 cd03114 ArgK-like The function 98.1 2E-05 4.3E-10 55.4 7.6 58 61-129 91-148 (148)
403 KOG1534 Putative transcription 98.1 1.2E-05 2.5E-10 58.6 6.1 113 63-177 99-253 (273)
404 PRK11889 flhF flagellar biosyn 98.1 0.00012 2.7E-09 59.0 12.1 134 14-157 242-412 (436)
405 COG1419 FlhF Flagellar GTP-bin 98.0 0.00018 3.9E-09 57.9 11.9 134 13-156 203-372 (407)
406 PRK14721 flhF flagellar biosyn 98.0 0.00022 4.8E-09 58.3 12.7 139 13-163 191-365 (420)
407 PF02492 cobW: CobW/HypB/UreG, 98.0 2.9E-05 6.3E-10 56.3 7.0 79 62-147 85-169 (178)
408 PRK00771 signal recognition pa 98.0 1.5E-05 3.3E-10 65.4 5.9 85 63-157 177-267 (437)
409 COG0523 Putative GTPases (G3E 98.0 0.00017 3.6E-09 57.1 11.5 88 62-157 85-184 (323)
410 PF03266 NTPase_1: NTPase; In 98.0 3E-05 6.5E-10 55.6 6.7 134 15-163 1-163 (168)
411 PRK10867 signal recognition pa 98.0 9.5E-05 2E-09 60.8 10.1 86 62-157 184-275 (433)
412 PRK12726 flagellar biosynthesi 97.9 0.00022 4.8E-09 57.3 11.5 135 13-157 206-377 (407)
413 KOG0459 Polypeptide release fa 97.9 2.4E-05 5.1E-10 62.3 5.5 155 11-168 77-279 (501)
414 PF06858 NOG1: Nucleolar GTP-b 97.9 9.2E-05 2E-09 42.4 6.4 47 82-129 10-58 (58)
415 PRK11537 putative GTP-binding 97.9 0.00049 1.1E-08 54.5 12.5 95 62-167 91-196 (318)
416 TIGR00959 ffh signal recogniti 97.9 0.00017 3.6E-09 59.3 10.1 86 62-157 183-274 (428)
417 PRK05703 flhF flagellar biosyn 97.9 0.00048 1E-08 56.7 12.7 86 62-157 300-392 (424)
418 PRK06995 flhF flagellar biosyn 97.8 0.00053 1.2E-08 57.1 12.7 138 14-163 257-430 (484)
419 cd02038 FleN-like FleN is a me 97.8 8.1E-05 1.8E-09 51.7 6.8 107 17-131 4-110 (139)
420 KOG2485 Conserved ATP/GTP bind 97.8 2.4E-05 5.2E-10 60.3 4.0 62 10-72 140-206 (335)
421 PRK14723 flhF flagellar biosyn 97.8 0.00049 1.1E-08 60.1 11.8 140 15-163 187-362 (767)
422 PRK12723 flagellar biosynthesi 97.8 0.00093 2E-08 54.3 12.8 139 13-163 174-351 (388)
423 PRK12724 flagellar biosynthesi 97.8 0.00028 6E-09 57.5 9.5 134 14-157 224-394 (432)
424 cd02042 ParA ParA and ParB of 97.8 0.00027 5.8E-09 46.3 8.0 82 16-109 2-84 (104)
425 PRK06731 flhF flagellar biosyn 97.7 0.00054 1.2E-08 52.9 10.2 134 14-157 76-246 (270)
426 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.0004 8.8E-09 44.5 8.3 70 16-99 2-72 (99)
427 cd00009 AAA The AAA+ (ATPases 97.6 0.00058 1.3E-08 47.1 8.9 26 13-38 19-44 (151)
428 PF11111 CENP-M: Centromere pr 97.6 0.0047 1E-07 44.0 13.1 146 9-178 11-156 (176)
429 cd03111 CpaE_like This protein 97.6 0.00036 7.8E-09 46.0 7.1 99 20-127 7-106 (106)
430 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0008 1.7E-08 48.7 9.4 86 14-112 26-118 (177)
431 KOG0469 Elongation factor 2 [T 97.6 0.0003 6.6E-09 57.8 7.6 131 11-145 17-178 (842)
432 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 0.00017 3.7E-09 54.7 5.9 22 15-36 32-53 (254)
433 PF00004 AAA: ATPase family as 97.6 0.00058 1.3E-08 46.5 7.8 22 16-37 1-22 (132)
434 TIGR02475 CobW cobalamin biosy 97.5 0.0021 4.5E-08 51.5 11.7 21 16-36 7-27 (341)
435 PF13207 AAA_17: AAA domain; P 97.5 7.7E-05 1.7E-09 50.3 3.0 22 15-36 1-22 (121)
436 PRK08118 topology modulation p 97.5 8.6E-05 1.9E-09 53.3 3.2 23 15-37 3-25 (167)
437 KOG0780 Signal recognition par 97.5 0.00039 8.5E-09 55.3 6.8 92 13-104 101-232 (483)
438 PRK07261 topology modulation p 97.5 9.5E-05 2.1E-09 53.3 3.1 22 15-36 2-23 (171)
439 PF05621 TniB: Bacterial TniB 97.5 0.00092 2E-08 51.9 8.6 107 9-129 57-191 (302)
440 PF04665 Pox_A32: Poxvirus A32 97.5 9.6E-05 2.1E-09 55.8 3.1 35 2-36 2-36 (241)
441 PF13555 AAA_29: P-loop contai 97.4 0.00018 4E-09 42.2 3.3 24 15-38 25-48 (62)
442 PF13671 AAA_33: AAA domain; P 97.4 0.00012 2.6E-09 50.9 2.8 21 16-36 2-22 (143)
443 cd03110 Fer4_NifH_child This p 97.4 0.0021 4.5E-08 46.5 9.4 85 60-153 91-175 (179)
444 COG0563 Adk Adenylate kinase a 97.4 0.00014 3.1E-09 52.6 3.1 23 14-36 1-23 (178)
445 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00094 2E-08 45.8 6.9 23 15-37 24-46 (133)
446 cd02019 NK Nucleoside/nucleoti 97.3 0.00021 4.6E-09 43.2 3.0 22 16-37 2-23 (69)
447 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0023 5E-08 53.3 9.7 85 88-172 196-281 (634)
448 cd02036 MinD Bacterial cell di 97.3 0.0082 1.8E-07 43.2 11.6 84 63-153 64-147 (179)
449 PF13521 AAA_28: AAA domain; P 97.3 0.00014 3E-09 51.9 2.2 22 15-36 1-22 (163)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0034 7.4E-08 43.8 9.2 23 15-37 28-50 (144)
451 PRK14738 gmk guanylate kinase; 97.3 0.00047 1E-08 51.2 4.9 28 10-37 10-37 (206)
452 COG1116 TauB ABC-type nitrate/ 97.3 0.00029 6.3E-09 52.9 3.5 23 16-38 32-54 (248)
453 COG1136 SalX ABC-type antimicr 97.3 0.0003 6.6E-09 52.5 3.5 24 15-38 33-56 (226)
454 PF00005 ABC_tran: ABC transpo 97.3 0.00025 5.5E-09 48.9 3.0 23 15-37 13-35 (137)
455 COG1126 GlnQ ABC-type polar am 97.2 0.00033 7.1E-09 51.6 3.5 24 15-38 30-53 (240)
456 smart00072 GuKc Guanylate kina 97.2 0.0023 5.1E-08 46.6 7.9 23 15-37 4-26 (184)
457 PRK10646 ADP-binding protein; 97.2 0.0031 6.7E-08 44.3 8.1 23 15-37 30-52 (153)
458 PF03205 MobB: Molybdopterin g 97.2 0.0003 6.5E-09 48.9 3.0 23 15-37 2-24 (140)
459 PF07015 VirC1: VirC1 protein; 97.2 0.0033 7.2E-08 47.0 8.6 102 62-168 84-187 (231)
460 COG4598 HisP ABC-type histidin 97.2 0.0013 2.7E-08 47.3 6.0 81 88-179 117-204 (256)
461 KOG2423 Nucleolar GTPase [Gene 97.2 0.00011 2.5E-09 58.4 0.9 55 13-71 307-361 (572)
462 KOG1533 Predicted GTPase [Gene 97.2 0.00073 1.6E-08 50.3 4.9 68 62-131 97-176 (290)
463 PF03215 Rad17: Rad17 cell cyc 97.2 0.0025 5.3E-08 53.8 8.7 22 15-36 47-68 (519)
464 COG0194 Gmk Guanylate kinase [ 97.2 0.0002 4.4E-09 51.4 1.8 24 14-37 5-28 (191)
465 PRK06217 hypothetical protein; 97.2 0.00038 8.2E-09 50.7 3.2 23 14-36 2-24 (183)
466 PF13238 AAA_18: AAA domain; P 97.2 0.00034 7.5E-09 47.5 2.8 22 16-37 1-22 (129)
467 cd00071 GMPK Guanosine monopho 97.2 0.00038 8.2E-09 48.2 3.0 21 16-36 2-22 (137)
468 cd01131 PilT Pilus retraction 97.1 0.0026 5.7E-08 46.9 7.6 22 16-37 4-25 (198)
469 PRK01889 GTPase RsgA; Reviewed 97.1 0.00056 1.2E-08 55.1 4.2 25 14-38 196-220 (356)
470 PF02367 UPF0079: Uncharacteri 97.1 0.0011 2.4E-08 44.8 4.9 23 15-37 17-39 (123)
471 smart00382 AAA ATPases associa 97.1 0.00046 1E-08 47.2 3.2 27 14-40 3-29 (148)
472 COG3640 CooC CO dehydrogenase 97.1 0.013 2.9E-07 43.8 10.6 62 63-130 135-197 (255)
473 PRK10078 ribose 1,5-bisphospho 97.1 0.00047 1E-08 50.4 3.1 23 15-37 4-26 (186)
474 KOG0446 Vacuolar sorting prote 97.1 0.00032 6.8E-09 60.6 2.4 122 8-131 24-212 (657)
475 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00051 1.1E-08 45.2 2.8 20 15-34 17-36 (107)
476 TIGR02322 phosphon_PhnN phosph 97.1 0.00051 1.1E-08 49.8 3.0 23 15-37 3-25 (179)
477 COG0802 Predicted ATPase or ki 97.1 0.0036 7.9E-08 43.5 6.9 24 15-38 27-50 (149)
478 PRK04195 replication factor C 97.1 0.019 4.1E-07 48.4 12.6 25 13-37 39-63 (482)
479 PRK05416 glmZ(sRNA)-inactivati 97.1 0.011 2.3E-07 46.3 10.4 20 15-34 8-27 (288)
480 PRK14530 adenylate kinase; Pro 97.0 0.00055 1.2E-08 51.2 3.2 23 14-36 4-26 (215)
481 cd03238 ABC_UvrA The excision 97.0 0.00061 1.3E-08 49.3 3.1 21 14-34 22-42 (176)
482 PRK05480 uridine/cytidine kina 97.0 0.00082 1.8E-08 50.0 3.9 25 12-36 5-29 (209)
483 PRK03839 putative kinase; Prov 97.0 0.00062 1.4E-08 49.4 3.2 22 15-36 2-23 (180)
484 TIGR00235 udk uridine kinase. 97.0 0.00086 1.9E-08 49.9 3.9 25 12-36 5-29 (207)
485 COG0541 Ffh Signal recognition 97.0 0.0025 5.5E-08 51.7 6.7 63 62-131 183-252 (451)
486 cd01130 VirB11-like_ATPase Typ 97.0 0.00065 1.4E-08 49.6 3.2 24 14-37 26-49 (186)
487 TIGR03263 guanyl_kin guanylate 97.0 0.00059 1.3E-08 49.4 2.9 23 15-37 3-25 (180)
488 cd02023 UMPK Uridine monophosp 97.0 0.0006 1.3E-08 50.3 3.0 22 16-37 2-23 (198)
489 COG1120 FepC ABC-type cobalami 97.0 0.0006 1.3E-08 52.0 2.9 21 16-36 31-51 (258)
490 PRK13949 shikimate kinase; Pro 97.0 0.00072 1.6E-08 48.6 3.2 22 15-36 3-24 (169)
491 PRK14737 gmk guanylate kinase; 97.0 0.00089 1.9E-08 48.9 3.7 24 14-37 5-28 (186)
492 PRK10751 molybdopterin-guanine 97.0 0.00092 2E-08 48.0 3.6 25 13-37 6-30 (173)
493 COG3840 ThiQ ABC-type thiamine 96.9 0.0008 1.7E-08 48.4 3.0 25 14-38 26-50 (231)
494 COG3638 ABC-type phosphate/pho 96.9 0.00071 1.5E-08 50.5 2.8 21 15-35 32-52 (258)
495 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00073 1.6E-08 49.2 2.9 22 14-35 4-25 (188)
496 cd02025 PanK Pantothenate kina 96.9 0.00071 1.5E-08 50.8 2.8 22 16-37 2-23 (220)
497 KOG0057 Mitochondrial Fe/S clu 96.9 0.0042 9E-08 51.8 7.4 22 14-35 379-400 (591)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00083 1.8E-08 50.3 3.1 23 15-37 32-54 (218)
499 PF07728 AAA_5: AAA domain (dy 96.9 0.00085 1.8E-08 46.4 3.0 23 15-37 1-23 (139)
500 COG3845 ABC-type uncharacteriz 96.9 0.0076 1.7E-07 49.7 8.7 62 66-129 138-201 (501)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=243.37 Aligned_cols=180 Identities=47% Similarity=0.776 Sum_probs=171.7
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
..+.+++.+||+++|.+|+|||.|+.||....|...+..|.|.++..+.+.++++.+++++|||+||++|+.+..+|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 164 (217)
++++|+|||+++..||..+..|+..+.++...++|.++||||+|+.+.+.++.++++.|+..++++ ++++||+++.+++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999999999999999889999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCC
Q 027894 165 NAFTEVLTQIYHVVSRKALDI 185 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~ 185 (217)
++|..|...+.+.........
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCC
Confidence 999999999988876654444
No 2
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-40 Score=236.03 Aligned_cols=210 Identities=73% Similarity=1.106 Sum_probs=190.5
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+...++.+||+++|.+++|||-|+.+|..++|...+.+|.+.++....+.++++.++.++|||+||++|+....+|++.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
.++++|||++.+.+|+.+.+|+.+++.+...++++++|+||+||.+.+.+..++++.++++.+..++++||.+..|+++.
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCC---CCCCCCceeeecCCC--CccCccccCccC
Q 027894 167 FTEVLTQIYHVVSRKALDIGGDP---AALPKGQTINVGGKD--DVSAVKKVGCCN 216 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~c~~ 216 (217)
|..++..++....++.......+ ....+|.++++.... ..+..++..||+
T Consensus 168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 99999999999998876655442 233456666665333 235566778885
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-40 Score=233.22 Aligned_cols=197 Identities=41% Similarity=0.706 Sum_probs=173.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|..++|||||+-||..+.|.....+|+|..+....+.+++..+++.+|||+|+++|.++.+.|+++++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 46999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|||+++.+||..++.|...+.....+++.+.+||||+|+.+.+++..+++..+++..+..|+++||+++.|++++|..|.
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 99999999999999999999998877888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCccC
Q 027894 172 TQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCN 216 (217)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (217)
+.+......... ..+..+ ...++.+.+ ..+.+++||.
T Consensus 164 ~~lp~~~~~~~~----~~~~~~--~g~~l~~~~--~~~~~~~~C~ 200 (200)
T KOG0092|consen 164 EKLPCSDPQERQ----GLPNRR--QGVDLNSNQ--EPARPSGCCA 200 (200)
T ss_pred HhccCccccccc----cccccc--cceecccCC--CCcCcCCcCC
Confidence 999876654432 101111 233344332 3456778884
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-40 Score=224.68 Aligned_cols=172 Identities=45% Similarity=0.731 Sum_probs=162.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
++..+..+||+++|.+|+|||||+.+|..+.|.+....|.|.++.++.+.+++..+++.+|||+|+++|+.+...|++.+
T Consensus 5 ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRga 84 (209)
T KOG0080|consen 5 SSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGA 84 (209)
T ss_pred ccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccC
Confidence 35677889999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
.++|+|||++.+++|..+..|++++..+.. +++..++|+||+|...++.++.++...|++++++.|+++||++.+++..
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 999999999999999999999999998875 6777889999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027894 166 AFTEVLTQIYHVV 178 (217)
Q Consensus 166 ~~~~i~~~~~~~~ 178 (217)
+|+.+++.+++-.
T Consensus 165 ~FeelveKIi~tp 177 (209)
T KOG0080|consen 165 CFEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999998543
No 5
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-39 Score=229.43 Aligned_cols=176 Identities=48% Similarity=0.824 Sum_probs=169.2
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
+.++.+..+||+++|.+|||||+|+.+|..+.+...+..|.|+++....+..++..+.+++|||+||+++..+...|++.
T Consensus 5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
|+++++|||+++..||+.+..|+..+..+...++|.++||||+|+...+++..+.++.+|.++|++|+|+||++|.||++
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 027894 166 AFTEVLTQIYHVVSRK 181 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~ 181 (217)
.|..+...+....++.
T Consensus 165 aF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 165 AFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHHhhcchh
Confidence 9999999999866554
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=225.60 Aligned_cols=181 Identities=48% Similarity=0.816 Sum_probs=171.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.+.+.+|++++|..|+|||+|+.+|+...|.+.+..|.|+++....+.++++.+++++|||.|++.+++....|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
+|+|||+++++||..+..|+..+..+...+..+++++||+|+...++++.++...|+++++..+.++||++++|+.|.|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999998878999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCC
Q 027894 169 EVLTQIYHVVSRKALDIGGDP 189 (217)
Q Consensus 169 ~i~~~~~~~~~~~~~~~~~~~ 189 (217)
.+...+++-...+-.+.--++
T Consensus 162 nta~~Iy~~~q~g~~~~~~~~ 182 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFDDINES 182 (216)
T ss_pred HHHHHHHHHHHhccccccccc
Confidence 999999988877755544443
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=227.16 Aligned_cols=168 Identities=38% Similarity=0.684 Sum_probs=159.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|..++||||||.+|..+.|...+..|+|+++....+.+.+.++++++|||+||++|+.+.+.|++++.++++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCC-CCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDS-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|||+++..||+....|++.+...++. ++.+++||||.||.+.+++..++....++++++.|.++||+.|+||+++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999988875 58889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhh
Q 027894 171 LTQIYHVVS 179 (217)
Q Consensus 171 ~~~~~~~~~ 179 (217)
...++....
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 777776554
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.9e-38 Score=235.04 Aligned_cols=208 Identities=68% Similarity=1.064 Sum_probs=174.8
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
...+.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.
T Consensus 5 ~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred cccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 34456688999999999999999999999999887788888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
++++++|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK 164 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999998877666899999999999987777888889999998999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCC---CCCCCceeeecCCCCccCccccCccC
Q 027894 166 AFTEVLTQIYHVVSRKALDIGGDPA---ALPKGQTINVGGKDDVSAVKKVGCCN 216 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (217)
+|++++..+.+.............+ .-++++++.+ .+. ...|+.+||+
T Consensus 165 lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~c~ 215 (216)
T PLN03110 165 AFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINV--ADT-SGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHHHHHhhccccccccCcccccCcCcCCcccc--cCc-cCCCCCCCcC
Confidence 9999999998876554443322111 1134455555 232 3456668986
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.3e-37 Score=225.38 Aligned_cols=169 Identities=37% Similarity=0.677 Sum_probs=155.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 55779999999999999999999999988877778888888878888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|||++++.||+.+..|+..+.... ++.|++||+||.|+...+.++.++++.++...+++|+++||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997765 68999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 027894 170 VLTQIYHVVS 179 (217)
Q Consensus 170 i~~~~~~~~~ 179 (217)
+.+.+.....
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9998876554
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=218.95 Aligned_cols=172 Identities=40% Similarity=0.679 Sum_probs=159.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....+||+++|.+|+|||||++++.+..|...+..|++.++..+.+.+++..+.+++|||+|+++|.++.-.+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCC--cccCCHHHHHHHHHHc-CCcEEEeccCCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRH--LCAVSTEDAKAFAERE-NTFFMETSALESM 161 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 161 (217)
.++|||+.++.||+.+..|..++..... ..-|+||+|||+|+.. .+.++...++.|++.. ++|||++||+...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999887664 4578999999999965 3789999999999876 4899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 027894 162 NVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~~~~~ 180 (217)
||.+.|+.+...+++....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999877654
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.7e-37 Score=227.69 Aligned_cols=195 Identities=37% Similarity=0.620 Sum_probs=162.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888888888877777777 7789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAF 167 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~ 167 (217)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+ ..++++||+++.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876432 2578999999999997666788889999999988 689999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCcc
Q 027894 168 TEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCC 215 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
++|.+.+.+.........++. +.-.+...+.+...|..+||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPE-------DGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCC-------cccccccccceeccccCCCC
Confidence 999999987754443333221 11222333445555666898
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-36 Score=224.58 Aligned_cols=165 Identities=38% Similarity=0.715 Sum_probs=152.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+.|+++|..|||||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888889888888888889998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|++++.||+.+..|+..+......+.|+++|+||+|+...+++..++..++++.. ++.|+++||++|.|++++|+++.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766578999999999999877888888899998875 789999999999999999999999
Q ss_pred HHHHHh
Q 027894 173 QIYHVV 178 (217)
Q Consensus 173 ~~~~~~ 178 (217)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 13
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.9e-36 Score=224.06 Aligned_cols=197 Identities=44% Similarity=0.682 Sum_probs=165.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|+++|++|+|||||+++|.+..+...+.+|.+.++....+.+.+..+.+.+||+||++.+...+..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35689999999999999999999999998877888888888878888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|||++++.+|+.+..|+..+.... ...|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999987655 67899999999999876677788888899888999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCcc
Q 027894 170 VLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCC 215 (217)
Q Consensus 170 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
|...+............ +.++++....+ .+.+|+.+||
T Consensus 162 l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~ 199 (199)
T cd04110 162 ITELVLRAKKDNLAKQQ-------QQQQNDVVKLP-KNSKRKKRCC 199 (199)
T ss_pred HHHHHHHhhhccCcccc-------cCCccccCccc-hhccccccCC
Confidence 99999876544322111 12333333333 3335666887
No 14
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6e-38 Score=209.83 Aligned_cols=170 Identities=49% Similarity=0.774 Sum_probs=162.8
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
...+..++.+++|.+|+|||+|+.+|....|+.+|..|.|.++...++.+++..+++++|||+|++.|+.+...|++..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++++|||+++.+||....+|+..+...+ +..|-++|+||.|.++.+.+..++++.|+...++.+|++|++.++|+++.|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 9999999999999999999999999888 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
.-|.+.+....
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999888777
No 15
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-37 Score=206.14 Aligned_cols=175 Identities=39% Similarity=0.740 Sum_probs=166.5
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.++.+++.+|++++|...+|||||+.++.+..|.+...+|.|+++..+++.-..+.+++++|||.|++.|+.+...+++.
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence 45678889999999999999999999999999999999999999999998778889999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
++++|++||+++.+||..++.|...+......+.|+|+|+||||+..++.++.+..+.++.+.|+.||++||+.+.|+++
T Consensus 94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027894 166 AFTEVLTQIYHVVSR 180 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~ 180 (217)
+|+.++..+-+.+++
T Consensus 174 ~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 174 VFERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988876654
No 16
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-37 Score=206.64 Aligned_cols=190 Identities=45% Similarity=0.739 Sum_probs=179.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
++.+++.+|++++|+.|+|||.|+.+|+...+......|.+.++....+.+.++.+++++|||+|+++|++..+.|++.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
.+.++|||++++++|+.+..|+..+.....+++-+++++||.|+.++++++..++..|+.+..+.+.++|+++|+|++|.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 027894 167 FTEVLTQIYHVVSRKALDIGGDPAALPKGQ 196 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (217)
|-.....++...+-++++++.-.+.+.-|+
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~gsGIQYGd 192 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERMGSGIQYGD 192 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHcccccccch
Confidence 999999999999988888877666666554
No 17
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.1e-36 Score=218.95 Aligned_cols=168 Identities=48% Similarity=0.792 Sum_probs=152.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998777788888887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+|+.+..|+..+........|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887665678999999999998777788888888988889999999999999999999999999
Q ss_pred HHHHhhcc
Q 027894 174 IYHVVSRK 181 (217)
Q Consensus 174 ~~~~~~~~ 181 (217)
+.......
T Consensus 161 ~~~~~~~~ 168 (188)
T cd04125 161 IIKRLEEQ 168 (188)
T ss_pred HHHHhhcC
Confidence 98765443
No 18
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-37 Score=204.88 Aligned_cols=206 Identities=37% Similarity=0.694 Sum_probs=179.9
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
+++.+.+||+++|..|+|||.|+++|..+.|++....|.+.++..+++.+++..+++++|||+|+++|+++...|++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++|+|||++...||+-+..|+..+..+...++.-|+|+||+|+.+++++.....++|++.....|+++||++.++++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCC---CCCCCCCceeeecCCCCccCccccCccC
Q 027894 168 TEVLTQIYHVVSRKALDIGGD---PAALPKGQTINVGGKDDVSAVKKVGCCN 216 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (217)
..+.-.+.............+ +..-..|.+|.+.+.. ..+...||.
T Consensus 162 ~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~a---qt~~~~cc~ 210 (213)
T KOG0095|consen 162 LDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYA---QTQLLTCCN 210 (213)
T ss_pred HHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHH---HHHHhcccc
Confidence 999888877665443322222 2222456777666442 244457774
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.2e-35 Score=221.12 Aligned_cols=176 Identities=24% Similarity=0.431 Sum_probs=154.8
Q ss_pred CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894 1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
|+.-+.+.+....+||+++|..|||||||+++|..+.|...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++.
T Consensus 1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~ 79 (232)
T cd04174 1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRP 79 (232)
T ss_pred CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 555555666668899999999999999999999999998888888876654 4577888999999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHH
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAER 147 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~ 147 (217)
.+++++|++++|||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.. .+.++.+++.++++.
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 999999999999999999999984 88999988765 5789999999999964 256889999999999
Q ss_pred cCC-cEEEeccCCCC-CHHHHHHHHHHHHHHHh
Q 027894 148 ENT-FFMETSALESM-NVENAFTEVLTQIYHVV 178 (217)
Q Consensus 148 ~~~-~~~~~Sa~~~~-~v~~~~~~i~~~~~~~~ 178 (217)
+++ .|+++||++++ |++++|..+...+.+..
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence 998 59999999998 89999999999887643
No 20
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=218.57 Aligned_cols=206 Identities=46% Similarity=0.772 Sum_probs=171.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|||++++.+++.+..|+..+........|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988877665568999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccc--CCCCCCCCCCCCceeeecCCCCccCccccCcc
Q 027894 170 VLTQIYHVVSRKAL--DIGGDPAALPKGQTINVGGKDDVSAVKKVGCC 215 (217)
Q Consensus 170 i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
+++.+++...+... ..+.+-...|.|+--.....++-...|-||||
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 163 TAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 99999876543333 22222333344433333344455557788998
No 21
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-35 Score=216.90 Aligned_cols=165 Identities=45% Similarity=0.748 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|||||||+++|....+.. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998754 4567777777776777888889999999999999998889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
+|++++.+++.+..|+..+......+.|+++|+||+|+..++.+..++...++..++++|+++||+++.|++++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776568999999999999766677778888999889999999999999999999999999
Q ss_pred HHHHHh
Q 027894 173 QIYHVV 178 (217)
Q Consensus 173 ~~~~~~ 178 (217)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987664
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.3e-35 Score=212.39 Aligned_cols=164 Identities=51% Similarity=0.857 Sum_probs=150.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+++.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888888888877788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
||++++.+|+.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766577999999999999877778888999999999999999999999999999999998
Q ss_pred HHHH
Q 027894 173 QIYH 176 (217)
Q Consensus 173 ~~~~ 176 (217)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8764
No 23
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.6e-35 Score=217.61 Aligned_cols=166 Identities=35% Similarity=0.524 Sum_probs=145.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999988777777776554 3445577888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
++++.||+.+..|+..+..... .+.|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888866542 5789999999999987777888888888888899999999999999999999999
Q ss_pred HHHHHHhhcc
Q 027894 172 TQIYHVVSRK 181 (217)
Q Consensus 172 ~~~~~~~~~~ 181 (217)
+.+..++..+
T Consensus 160 ~~l~~~~~~~ 169 (190)
T cd04144 160 RALRQQRQGG 169 (190)
T ss_pred HHHHHhhccc
Confidence 9888766554
No 24
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=205.46 Aligned_cols=193 Identities=34% Similarity=0.605 Sum_probs=176.1
Q ss_pred CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894 1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
|+..++-....+.+||+++|.-=+|||||+-++..+.|......|....+..+.+.+.+....+.+|||+|+++|..+-+
T Consensus 1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP 80 (218)
T KOG0088|consen 1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP 80 (218)
T ss_pred CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence 44455566678899999999999999999999999999998888888888889999999999999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
-|++..+++++|||++|.+||+.++.|...+....+..+-++||+||+|+.+++.++.+++..++..-|..|+++||+++
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 027894 161 MNVENAFTEVLTQIYHVVSRKALDIGGDPAALP 193 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 193 (217)
.|+.++|+.+....+++....+.+-.+.+..-|
T Consensus 161 ~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp 193 (218)
T KOG0088|consen 161 VGISELFESLTAKMIEHSSQRQRTRSPLSTQPP 193 (218)
T ss_pred cCHHHHHHHHHHHHHHHhhhcccccCCcCCCCC
Confidence 999999999999999998777776655544434
No 25
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.7e-35 Score=219.52 Aligned_cols=165 Identities=35% Similarity=0.554 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|..+.+.. ..++.+..+....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 45666655544332 4578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-------------------cccCCHHHHHHHHHHcC-----
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-------------------LCAVSTEDAKAFAEREN----- 149 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 149 (217)
|++++.||+.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888777765556799999999999965 57788899999998876
Q ss_pred ---------CcEEEeccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894 150 ---------TFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183 (217)
Q Consensus 150 ---------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~ 183 (217)
++|+++||++|.|++++|+.+++.+.....+...
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999999877755544
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.4e-35 Score=218.70 Aligned_cols=165 Identities=32% Similarity=0.526 Sum_probs=149.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889998888888887754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998876542 35689999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027894 170 VLTQIYHVV 178 (217)
Q Consensus 170 i~~~~~~~~ 178 (217)
+...+....
T Consensus 161 l~~~l~~~~ 169 (215)
T cd04109 161 LAAELLGVD 169 (215)
T ss_pred HHHHHHhcc
Confidence 999988653
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=7.1e-35 Score=210.04 Aligned_cols=166 Identities=49% Similarity=0.836 Sum_probs=151.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 45799999999999999999999999998888889888888788888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887665789999999999998766778888888999899999999999999999999999
Q ss_pred HHHHHH
Q 027894 171 LTQIYH 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998753
No 28
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.1e-35 Score=212.38 Aligned_cols=163 Identities=28% Similarity=0.504 Sum_probs=146.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|..|+|||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887555 456778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cEEEec
Q 027894 91 LVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.++.+++.++++..++ +|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78999988766 6799999999999864 246889999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q 027894 157 ALESMN-VENAFTEVLTQIY 175 (217)
Q Consensus 157 a~~~~~-v~~~~~~i~~~~~ 175 (217)
|++++| ++++|+.+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999988643
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=7.1e-35 Score=214.02 Aligned_cols=166 Identities=34% Similarity=0.535 Sum_probs=146.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988777777776555 4556678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+.++|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999988876543 578999999999997766777778888888888999999999999999999999
Q ss_pred HHHHHHHh
Q 027894 171 LTQIYHVV 178 (217)
Q Consensus 171 ~~~~~~~~ 178 (217)
.+.+....
T Consensus 163 ~~~l~~~~ 170 (189)
T PTZ00369 163 VREIRKYL 170 (189)
T ss_pred HHHHHHHh
Confidence 99887654
No 30
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-34 Score=213.76 Aligned_cols=170 Identities=44% Similarity=0.737 Sum_probs=153.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
.+||+++|.+|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988888888888887777766 4667899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|||++++.||+.+..|+..+..... ...|+++|+||+|+.+.+.+..++...+++..+++++++||+++.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 457889999999998777788888999999999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 027894 171 LTQIYHVVSRKA 182 (217)
Q Consensus 171 ~~~~~~~~~~~~ 182 (217)
.+.+.+...+++
T Consensus 162 ~~~~~~~~~~~~ 173 (211)
T cd04111 162 TQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHhhcCC
Confidence 999988876665
No 31
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3e-35 Score=200.07 Aligned_cols=179 Identities=42% Similarity=0.725 Sum_probs=163.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+-..+.+|.+++|.+-+|||+|++.|+.+.+..-+.||.|.++....+.+ ++..+++++|||+|+++|+++...|+++.
T Consensus 3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 44678899999999999999999999999999999999999999887776 67889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCC-C-CCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTD-S-NIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
-++++|||+++..||+.++.|+........ + ++.+.+|++|+|+...++++.++++.+++.+++.|+++|++++.|++
T Consensus 83 vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999999987765543 3 44467799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCC
Q 027894 165 NAFTEVLTQIYHVVSRKALDIG 186 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~~~~~ 186 (217)
+.|..+.+.++....+++..+.
T Consensus 163 EAF~mlaqeIf~~i~qGeik~e 184 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQQGEIKLE 184 (213)
T ss_pred HHHHHHHHHHHHHHhcCceeee
Confidence 9999999999999988766544
No 32
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.3e-35 Score=210.22 Aligned_cols=160 Identities=31% Similarity=0.555 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+.+|..+.+...+.+|.+..+ ...+.+++..+++.+|||+|++++..++..+++++|++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887655 445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCcc----------cCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894 94 DVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLC----------AVSTEDAKAFAERENT-FFMETSALESM 161 (217)
Q Consensus 94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
|++++.||+.+ ..|+..+.... .+.|+++|+||+|+.+.+ .+..+++..++...++ +|+++||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987665 579999999999996542 4788999999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQIY 175 (217)
Q Consensus 162 ~v~~~~~~i~~~~~ 175 (217)
|++++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.1e-34 Score=208.40 Aligned_cols=165 Identities=30% Similarity=0.475 Sum_probs=146.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999877777776444 44566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
||++++.||+.+..|+..+..... .+.|+++|+||+|+.+.+.++.++...+++..+++|+++||+++.|++++|++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999988887776433 6799999999999987777888899999998999999999999999999999999
Q ss_pred HHHHHHh
Q 027894 172 TQIYHVV 178 (217)
Q Consensus 172 ~~~~~~~ 178 (217)
+.+....
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 9887643
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.6e-34 Score=205.95 Aligned_cols=162 Identities=41% Similarity=0.725 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777767777899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||+++.|++++|+++...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999998777777788888888889999999999999999999999887
Q ss_pred HH
Q 027894 174 IY 175 (217)
Q Consensus 174 ~~ 175 (217)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.9e-34 Score=205.97 Aligned_cols=163 Identities=49% Similarity=0.795 Sum_probs=149.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999998888788888888888888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
||++++.++..+..|+..+......+.|+++|+||+|+.....+..++...++...+++++++||+++.|++++|++|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999987766567999999999999776777888889999999999999999999999999999998
Q ss_pred HHH
Q 027894 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.6e-34 Score=208.80 Aligned_cols=167 Identities=41% Similarity=0.700 Sum_probs=149.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC----------CeEEEEEEEeCCCchhhhhhhH
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE----------DKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888887776666554 3568899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.+++++|++++|||++++.||..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999998887653 25789999999999987777888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~~ 177 (217)
+.|++++|++|.+.+++.
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 37
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.8e-34 Score=209.51 Aligned_cols=161 Identities=27% Similarity=0.505 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876655 35677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cEEEeccC
Q 027894 93 YDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FFMETSAL 158 (217)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 158 (217)
||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+..+++.++++..++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999988766 6899999999999954 245888999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 027894 159 ESMN-VENAFTEVLTQIY 175 (217)
Q Consensus 159 ~~~~-v~~~~~~i~~~~~ 175 (217)
+|++ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998543
No 38
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.3e-34 Score=205.68 Aligned_cols=166 Identities=52% Similarity=0.863 Sum_probs=152.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
++.+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++....+.+||+||++.+......+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.....++.|+++|+||.|+.....+..++...++...+++++++||++++|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999877665789999999999998666778888889999899999999999999999999999
Q ss_pred HHHHHH
Q 027894 171 LTQIYH 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988764
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.8e-34 Score=205.72 Aligned_cols=160 Identities=41% Similarity=0.712 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.||+.+..|+..+......+.|+++|+||.|+...+.+..++...+++..+++|+++||+++.|++++|++|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877655679999999999998777788889999999899999999999999999999999864
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6e-34 Score=205.08 Aligned_cols=162 Identities=33% Similarity=0.634 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899988888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-----CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-----SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+......++...++...+++++++||+++.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998877653 4689999999999976567788888888888899999999999999999999
Q ss_pred HHHHHHH
Q 027894 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.6e-34 Score=203.62 Aligned_cols=161 Identities=37% Similarity=0.695 Sum_probs=153.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|+.|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999998998899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
++++.||+.+..|+..+......+.|+++++||.|+.+.+.+..+++++++..++++|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988866799999999999988889999999999999999999999999999999999999987
Q ss_pred H
Q 027894 175 Y 175 (217)
Q Consensus 175 ~ 175 (217)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 42
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=6.1e-34 Score=209.25 Aligned_cols=162 Identities=30% Similarity=0.537 Sum_probs=142.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|..|||||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888887554 34456788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEeccC
Q 027894 93 YDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMETSAL 158 (217)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 158 (217)
||++++.||+.+. .|+..+.... .+.|+++|+||.|+.+. +.+..+++..++...+ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 5888776654 57999999999999643 2356778899999888 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~~ 176 (217)
+++|++++|+++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987753
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=8.2e-34 Score=204.06 Aligned_cols=163 Identities=79% Similarity=1.184 Sum_probs=149.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|||++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||+++.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998877655799999999999987777788888888888899999999999999999999998
Q ss_pred HHH
Q 027894 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 875
No 44
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.7e-33 Score=209.96 Aligned_cols=163 Identities=24% Similarity=0.453 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+|+|.+|||||||+++|..+.++..+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888888876554 56678889999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 94 DVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+|+.+ ..|...+.... ++.|++||+||+|+... ..++.+++..++++.++ +|+++||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999998 56776665544 68999999999999642 13678899999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHh
Q 027894 160 SMN-VENAFTEVLTQIYHVV 178 (217)
Q Consensus 160 ~~~-v~~~~~~i~~~~~~~~ 178 (217)
+++ ++++|+.++...+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 885 9999999999876533
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-33 Score=203.22 Aligned_cols=163 Identities=48% Similarity=0.797 Sum_probs=147.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999999888877788888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~ 169 (217)
+|||++++.+++.+..|+..+......+.|+++|+||+|+...++...+++..++...+. .++++||++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999876557899999999999987777788888888888775 6899999999999999999
Q ss_pred HHHH
Q 027894 170 VLTQ 173 (217)
Q Consensus 170 i~~~ 173 (217)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9875
No 46
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.3e-33 Score=207.05 Aligned_cols=166 Identities=31% Similarity=0.521 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|+|||||+++|.++.+...+.++.+..+... +... +..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999998877777766655443 4444 6778999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc----ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHH
Q 027894 93 YDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL----CAVSTEDAKAFAERENT-FFMETSALESMNVENA 166 (217)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 166 (217)
||++++.||+.+. .|+..+.... .+.|+++|+||+|+... +.+..++..+++...++ +++++||+++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5887776544 67999999999998643 24667888899999888 8999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 027894 167 FTEVLTQIYHVVSRK 181 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~ 181 (217)
|+.+.+.+.....+.
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999998666433
No 47
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.1e-33 Score=206.14 Aligned_cols=162 Identities=28% Similarity=0.536 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|..|+|||||+++|..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-----cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-----LCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
|++++.|++.+..|+..+........| ++|+||+|+.. ......++..++++..+++++++||+++.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776544566 67899999852 111234567788888899999999999999999999
Q ss_pred HHHHHHHH
Q 027894 169 EVLTQIYH 176 (217)
Q Consensus 169 ~i~~~~~~ 176 (217)
++.+.+++
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998875
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2e-33 Score=210.43 Aligned_cols=166 Identities=30% Similarity=0.514 Sum_probs=147.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 37789999999999999999999999999888889998888887787788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.. +.+..++. .++...+++|+++||+++.|++++|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 99999999999999999999988765 6799999999999864 33444444 677778899999999999999999999
Q ss_pred HHHHHHHHh
Q 027894 170 VLTQIYHVV 178 (217)
Q Consensus 170 i~~~~~~~~ 178 (217)
|.+.+.+..
T Consensus 167 l~~~~~~~~ 175 (219)
T PLN03071 167 LARKLAGDP 175 (219)
T ss_pred HHHHHHcCc
Confidence 999886543
No 49
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=4.6e-33 Score=205.15 Aligned_cols=164 Identities=35% Similarity=0.624 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|.+|+|||||+++|..+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 5667777777777888899889999999999999998899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc----ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL----CAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887654 57999999999998532 34556677888888889999999999999999999
Q ss_pred HHHHHHHHHh
Q 027894 169 EVLTQIYHVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.1e-33 Score=201.45 Aligned_cols=160 Identities=34% Similarity=0.555 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777667665 344556677888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 67999999999999766667777788888888899999999999999999999987
Q ss_pred HH
Q 027894 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 51
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=205.38 Aligned_cols=173 Identities=45% Similarity=0.702 Sum_probs=148.9
Q ss_pred cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
.++......+||+++|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++
T Consensus 6 ~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 84 (211)
T PLN03118 6 GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence 34566777899999999999999999999998874 45577777777777778888889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHH-HHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 85 GAVGALLVYDVTRHVTFENVER-WLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
.+|++++|||++++.+|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...+++|+++||+++.|
T Consensus 85 ~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 85 NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN 164 (211)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999865 655554333 25689999999999987667777888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027894 163 VENAFTEVLTQIYHVV 178 (217)
Q Consensus 163 v~~~~~~i~~~~~~~~ 178 (217)
++++|++|.+.+.+..
T Consensus 165 v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 165 VEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999997653
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.3e-33 Score=200.11 Aligned_cols=160 Identities=51% Similarity=0.840 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.++..+..|+..+.....++.|+++|+||+|+.....+..++...++...++.++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998876666789999999999998777788888999999999999999999999999999999875
No 53
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.5e-33 Score=199.42 Aligned_cols=163 Identities=62% Similarity=0.944 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+......+.|+++|+||+|+........+....++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887665789999999999997766777888888998899999999999999999999999998
Q ss_pred HHH
Q 027894 174 IYH 176 (217)
Q Consensus 174 ~~~ 176 (217)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 764
No 54
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.3e-33 Score=203.38 Aligned_cols=160 Identities=29% Similarity=0.475 Sum_probs=139.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998788888766554 3456788889999999999999998898999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEeccC
Q 027894 93 YDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMETSAL 158 (217)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 158 (217)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..+++.+++...+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 5888887654 57999999999998543 4567788888988877 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLTQI 174 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~ 174 (217)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5e-33 Score=199.79 Aligned_cols=160 Identities=31% Similarity=0.537 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999999888777767766544 355667888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+.+...+..++...+++..+++++++||+++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887643 367999999999999876667777788888888999999999999999999999987
Q ss_pred HH
Q 027894 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.5e-33 Score=198.41 Aligned_cols=159 Identities=36% Similarity=0.653 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888788888888777767666 777899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.....+..++...++...+++++++||+++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887655 6799999999999987677788888999999999999999999999999999987
Q ss_pred HH
Q 027894 172 TQ 173 (217)
Q Consensus 172 ~~ 173 (217)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.3e-32 Score=198.65 Aligned_cols=162 Identities=35% Similarity=0.619 Sum_probs=143.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCA--VSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
++++.+++.+..|+..+.... ....|+++|+||+|+.+... ...+++..++.+.+++++++||+++.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 24578999999999864332 345667788888889999999999999999999999
Q ss_pred HHHHH
Q 027894 172 TQIYH 176 (217)
Q Consensus 172 ~~~~~ 176 (217)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=9e-33 Score=197.89 Aligned_cols=160 Identities=34% Similarity=0.590 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|..+.+.+.+.++.+.+.....+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988877777777776767777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+.... .+.|+++|+||+|+... ...+...+++..+++++++||+++.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887654 57999999999998431 2344556677778999999999999999999999998
Q ss_pred HHHH
Q 027894 174 IYHV 177 (217)
Q Consensus 174 ~~~~ 177 (217)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.5e-32 Score=196.68 Aligned_cols=160 Identities=38% Similarity=0.738 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+++.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+|+.+..|+..+......+.|+++++||+|+.+......++...++...+++++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876655579999999999997666778888888888889999999999999999999999875
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.4e-32 Score=197.34 Aligned_cols=163 Identities=39% Similarity=0.675 Sum_probs=144.6
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999998887778888877777788888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVE 164 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 164 (217)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..+++.+++...+ .+++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999988776543 2568999999999986 45677888899988887 479999999999999
Q ss_pred HHHHHHHHH
Q 027894 165 NAFTEVLTQ 173 (217)
Q Consensus 165 ~~~~~i~~~ 173 (217)
++|+++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999865
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.6e-32 Score=197.47 Aligned_cols=160 Identities=33% Similarity=0.602 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998887778888888877777777888899999999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.+ .... .+..+++...+++++++||++++|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 9999999999999999998776 4899999999999973 2333 33456667778899999999999999999999988
Q ss_pred HHH
Q 027894 174 IYH 176 (217)
Q Consensus 174 ~~~ 176 (217)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.2e-32 Score=197.63 Aligned_cols=160 Identities=33% Similarity=0.534 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999998877766654 445566777888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|++++.+|+++..|+..+..... .+.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 67999999999999766666777778888888899999999999999999999987
Q ss_pred HH
Q 027894 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 63
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.5e-32 Score=195.10 Aligned_cols=162 Identities=49% Similarity=0.836 Sum_probs=147.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|++|+|||||+++|++..+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998877778888778788888888889999999999999998899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
+|++++.+++.+..|+..+........|+++++||+|+........++...++...+++++++||+++.|+.++|+++.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999888766577999999999999866677888888888888999999999999999999999998
Q ss_pred HH
Q 027894 173 QI 174 (217)
Q Consensus 173 ~~ 174 (217)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.8e-32 Score=196.91 Aligned_cols=161 Identities=37% Similarity=0.591 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999998877776666533 3455667788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+...+....++...++...+++++++||+++.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999998888766543 57899999999999776667778888888888999999999999999999999998
Q ss_pred HHH
Q 027894 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.9e-32 Score=196.95 Aligned_cols=162 Identities=38% Similarity=0.696 Sum_probs=146.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~ 91 (217)
.++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999887787888888888888888888999999999998886 578888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE---SMNVENAF 167 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~ 167 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 9999999999999999988876543 6799999999999987777888888999998999999999999 89999999
Q ss_pred HHHHHHH
Q 027894 168 TEVLTQI 174 (217)
Q Consensus 168 ~~i~~~~ 174 (217)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 66
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-32 Score=181.64 Aligned_cols=182 Identities=49% Similarity=0.828 Sum_probs=172.5
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
-.+.+.+|-+++|.-|+|||.|+..|....|...-+.+.+..+....+.+.+..+++++|||.|+++|+...+.+++.+.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+.++|||++.+.++..+..|+........++..+++++||.|+...+.+..++.++|+++.+..++++||++|+++++.|
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCC
Q 027894 168 TEVLTQIYHVVSRKALDIGGDP 189 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~~ 189 (217)
-.....+++...++..+++...
T Consensus 166 le~akkiyqniqdgsldlnaae 187 (215)
T KOG0097|consen 166 LETAKKIYQNIQDGSLDLNAAE 187 (215)
T ss_pred HHHHHHHHHhhhcCcccccchh
Confidence 9999999999999988876653
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.6e-32 Score=196.31 Aligned_cols=159 Identities=35% Similarity=0.463 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++++++.+...+.++.+..+ ...+......+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777767665433 444556777789999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++...++..++++++++||++|+|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999887776543 2579999999999997666777778888888888999999999999999999999
Q ss_pred HHH
Q 027894 171 LTQ 173 (217)
Q Consensus 171 ~~~ 173 (217)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 68
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.2e-32 Score=198.11 Aligned_cols=158 Identities=33% Similarity=0.511 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999988877777653 33445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.||+.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..++++.+. +++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6888776654 57999999999999542 24778889999999884 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQ 173 (217)
Q Consensus 160 ~~~v~~~~~~i~~~ 173 (217)
|+|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998764
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=4.5e-32 Score=194.15 Aligned_cols=160 Identities=32% Similarity=0.534 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988777777765444 45566788778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.....+...++...+++++++||+++.|++++|+++.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988888876543 5789999999999865 45666778888888899999999999999999999998
Q ss_pred HHH
Q 027894 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4.6e-32 Score=194.65 Aligned_cols=161 Identities=35% Similarity=0.573 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999887666666665433 44556788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.....+..++..++++..+++++++||+++.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887643 25789999999999977666777788888888899999999999999999999998
Q ss_pred HHH
Q 027894 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
..+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 71
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.1e-32 Score=199.97 Aligned_cols=156 Identities=30% Similarity=0.551 Sum_probs=139.9
Q ss_pred EcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh
Q 027894 19 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 19 vG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 98 (217)
+|..|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988877888888888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 99 VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 99 ~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
.||+.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.|+++||++++|++++|++|.+.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 6899999999999864 3444443 467778899999999999999999999999988754
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.5e-32 Score=200.47 Aligned_cols=161 Identities=35% Similarity=0.536 Sum_probs=138.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||+++|..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7999999999999999999999998777777765543 455567888999999999999999889899999999999999
Q ss_pred CCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcC-CcEEEeccCCC
Q 027894 95 VTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAEREN-TFFMETSALES 160 (217)
Q Consensus 95 ~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 160 (217)
++++.||+.+. .|+..+.... .+.|+++|+||+|+...+ .+..++...++...+ ++|+++||+++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999986 5888887654 589999999999996533 345667778887776 78999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQIYHV 177 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~ 177 (217)
.|++++|+++.+.+...
T Consensus 160 ~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 160 RGVNEAFTEAARVALNV 176 (189)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988743
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.9e-32 Score=199.82 Aligned_cols=162 Identities=21% Similarity=0.287 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhHhhhcC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AITSAYYRG 85 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 85 (217)
+||+++|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+|||||.+.+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988787887766666667778888999999999965432 123345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCC
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESM 161 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 161 (217)
+|++++|||++++.|++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999988887654 3679999999999997766667676777654 468999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQIY 175 (217)
Q Consensus 162 ~v~~~~~~i~~~~~ 175 (217)
|++++|+.++..+.
T Consensus 161 ~v~~lf~~i~~~~~ 174 (198)
T cd04142 161 HILLLFKELLISAT 174 (198)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998777
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.8e-31 Score=191.71 Aligned_cols=160 Identities=33% Similarity=0.586 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC--cCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+||+++|.+|||||||+++|... .+...+.++.+.++....+.+. +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777777888877777766664 56789999999999999998999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+..++...+...+....+++++++||+++.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887665 579999999999997766677777777777788999999999999999999999
Q ss_pred HHHH
Q 027894 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.2e-31 Score=190.61 Aligned_cols=161 Identities=39% Similarity=0.685 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|.+..+.....++.+.......+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766667666676667777777789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.+++.+..|+..+......+.|+++|+||+|+.....+..++..+++...+++++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988887765679999999999998766777788888888889999999999999999999999876
Q ss_pred H
Q 027894 174 I 174 (217)
Q Consensus 174 ~ 174 (217)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.3e-31 Score=191.66 Aligned_cols=165 Identities=41% Similarity=0.707 Sum_probs=145.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888788888887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~ 168 (217)
|++++.+++.+..|...+..... .+.|+++|+||+|+..+.....++...+....+ ++++++|++++.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888776654432 379999999999997656667788888888877 7899999999999999999
Q ss_pred HHHHHHHHHh
Q 027894 169 EVLTQIYHVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
++.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 77
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3.9e-31 Score=189.36 Aligned_cols=159 Identities=52% Similarity=0.839 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888887777778888889999999999999888899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.. .....++...++...+++++++||++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999988876653 6899999999999963 356677888888889999999999999999999999887
Q ss_pred H
Q 027894 173 Q 173 (217)
Q Consensus 173 ~ 173 (217)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 78
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.3e-31 Score=188.84 Aligned_cols=164 Identities=41% Similarity=0.774 Sum_probs=145.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|+|||||++++..+.+.+.+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777787777777777888888889999999999999988899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....+......+++++||++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999988877665679999999999997766777777778887778899999999999999999999
Q ss_pred HHHH
Q 027894 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8765
No 79
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.8e-31 Score=196.10 Aligned_cols=158 Identities=25% Similarity=0.381 Sum_probs=128.8
Q ss_pred eeEEEEEcCCCCChHHHHH-HHhhCc-----CCCCCCcccce-eEEEEE--------EEECCeEEEEEEEeCCCchhhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLS-RFTRNE-----FSLESKSTIGV-EFATRS--------IRVEDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
.+||+++|..|||||||+. ++.+.. +...+.+|.+. +.+... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 665543 34455566642 222222 246788899999999998753
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC-------------------cccCC
Q 027894 78 ITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH-------------------LCAVS 137 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~ 137 (217)
....+++++|++++|||++++.||+.+. .|+..+.... .+.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 5988887655 5789999999999863 36788
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 138 TEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
.+++..+++.++++|+++||++++|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998864
No 80
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=5.1e-31 Score=190.09 Aligned_cols=161 Identities=33% Similarity=0.534 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7899999999999999999999988777767765443 556667888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|++++.+++.+..|...+.... ..+.|+++++||.|+...+.+..++...++..++ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887543 2679999999999997767777778888888887 8899999999999999999999
Q ss_pred HHHH
Q 027894 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8765
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=2.3e-31 Score=192.89 Aligned_cols=158 Identities=34% Similarity=0.553 Sum_probs=136.7
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (217)
|+++|.+|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998777766665443 44566788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894 96 TRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALESM 161 (217)
Q Consensus 96 ~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
+++.||+.+. .|+..+.... ++.|+++|+||+|+... ..+..+++..+++..++ +++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888887655 68999999999999642 23677888889999886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQIY 175 (217)
Q Consensus 162 ~v~~~~~~i~~~~~ 175 (217)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.8e-31 Score=191.51 Aligned_cols=163 Identities=21% Similarity=0.206 Sum_probs=140.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
...+||+++|.+|||||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46899999999999999999999999998 77788888777777777888888899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFT 168 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~ 168 (217)
++|||++++.+++.+..|+..+... .+.|+++|+||+|+.+.......+..++++..++. ++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888766432 47999999999999654444444566777777774 79999999999999999
Q ss_pred HHHHHHH
Q 027894 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998765
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.7e-31 Score=200.28 Aligned_cols=160 Identities=24% Similarity=0.424 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|+++.+...+.+|.+ ++....+.+++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877777765 455666778888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHhcc---------CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCH
Q 027894 94 DVTRHVTFENVERWLKELRGH---------TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNV 163 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 163 (217)
|+++..||+.+..|+..+... ...+.|+++|+||+|+...+++..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 225799999999999976667788888877764 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 164 ENAFTEVLTQI 174 (217)
Q Consensus 164 ~~~~~~i~~~~ 174 (217)
+++|++|.+.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 84
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=6.3e-31 Score=197.19 Aligned_cols=166 Identities=30% Similarity=0.391 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc-CCcEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR-GAVGALL 91 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~ii~ 91 (217)
+||+++|.+|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+|||||++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999988875 555566554666777778888899999999999832 3344566 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 679999999999997777778888888888889999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 027894 171 LTQIYHVVSRK 181 (217)
Q Consensus 171 ~~~~~~~~~~~ 181 (217)
.+.+.......
T Consensus 159 ~~~~~~~~~~~ 169 (221)
T cd04148 159 VRQIRLRRDSK 169 (221)
T ss_pred HHHHHhhhccc
Confidence 99887655443
No 85
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-33 Score=187.67 Aligned_cols=174 Identities=40% Similarity=0.682 Sum_probs=156.9
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC---------CeEEEEEEEeCCCchhhhhh
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE---------DKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~ 78 (217)
-++++.++.+.+|.+|+||||++.++..+.|......|+++++..+.+.+. +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356788899999999999999999999999999999999999988877663 34578999999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..++++.+=+++++||+++..||-++..|+..+..+.- .+..+++++||+|+.+.+.++.+++.+++.++++|||++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999998876542 56778999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcc
Q 027894 158 LESMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 158 ~~~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
-++.|+++..+.++..+++..++-
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888887766543
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=1.1e-30 Score=186.03 Aligned_cols=158 Identities=54% Similarity=0.890 Sum_probs=144.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998887788888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|++++.+++.+..|+..+......+.|+++++||+|+........++...++...+++++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988877656799999999999975566778889999988899999999999999999999886
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=6.2e-31 Score=187.49 Aligned_cols=153 Identities=20% Similarity=0.331 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|+.|+|||||+.+++.+.+...+.++. -.+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999988876654432 233 45677888888999999999964 24568899999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCC--CcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR--HLCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
|++++.||+.+..|+..+..... .+.|+++|+||.|+. ..+++..+++.++++.. ++.|++|||+++.|++++|+.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999887654 678999999999985 35678888888898776 589999999999999999999
Q ss_pred HHHH
Q 027894 170 VLTQ 173 (217)
Q Consensus 170 i~~~ 173 (217)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 88
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=9.3e-31 Score=189.61 Aligned_cols=157 Identities=34% Similarity=0.544 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877776665 4444556777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..+++..+. +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999884 6888777543 5799999999999853 346778889999998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLT 172 (217)
Q Consensus 160 ~~~v~~~~~~i~~ 172 (217)
+.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988764
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=4.9e-31 Score=189.63 Aligned_cols=160 Identities=34% Similarity=0.512 Sum_probs=135.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~ 93 (217)
||+++|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||+||++. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999999887666656654333 45566788888999999999875 3445677889999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC-CCHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES-MNVENAFTEV 170 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~~~~i 170 (217)
|++++.||+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++|+++||+++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 357999999999999766677888888999888999999999999 5999999999
Q ss_pred HHHHH
Q 027894 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 88664
No 90
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=5.6e-33 Score=183.05 Aligned_cols=162 Identities=43% Similarity=0.705 Sum_probs=150.1
Q ss_pred EEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 027894 17 VLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (217)
Q Consensus 17 ~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (217)
+++|.+++|||.|+-++..+.|.. ...+|.++++..+.+.++++.+++++|||.||++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 478999999999999988877654 4568899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 96 TRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 96 ~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.++.||+..+.|+..+..+....+.+.+++||+|+..++.+..++.+.+++.+++|+.++||++|.|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999888777888999999999888899999999999999999999999999999999999998887
Q ss_pred HHh
Q 027894 176 HVV 178 (217)
Q Consensus 176 ~~~ 178 (217)
+..
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 544
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=1.9e-30 Score=188.10 Aligned_cols=159 Identities=30% Similarity=0.481 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998776666654 333445667888888999999999999988999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. +.+..+++..++...++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 577777655 478999999999998542 25667888888888886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~ 174 (217)
+.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=5.7e-30 Score=183.64 Aligned_cols=161 Identities=35% Similarity=0.547 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++++...+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999988777666654433 445567878899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.........+...++..++++++++||++++|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999998888877643 57999999999999765556777778888888899999999999999999999988
Q ss_pred HHH
Q 027894 173 QIY 175 (217)
Q Consensus 173 ~~~ 175 (217)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 775
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.1e-29 Score=181.42 Aligned_cols=158 Identities=35% Similarity=0.561 Sum_probs=139.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|++|||||||++++++..+...+.++.. +.....+...+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999887777666665 4555566677777899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
++++.+++.+..|+..+..... ...|+++|+||+|+........+++..++...+.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877664 589999999999998766778888889999888999999999999999999999875
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.4e-29 Score=184.88 Aligned_cols=167 Identities=20% Similarity=0.329 Sum_probs=132.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998887644 466665555554443 3456889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------cCCcEEEeccCCCCCHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER------ENTFFMETSALESMNVE 164 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~ 164 (217)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....++...+... .+++++++||++++|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999999988888877665432 5799999999999864 2344444444321 13568999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 027894 165 NAFTEVLTQIYHVVSRKA 182 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (217)
++|++|.+.+.+.+...+
T Consensus 160 ~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 160 EGLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999987775443
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=8.7e-30 Score=183.53 Aligned_cols=154 Identities=19% Similarity=0.355 Sum_probs=123.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|||||||+++|..+.+.. +.+|.+.++. .+.. ..+.+.+|||||++.+...+..+++.+|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999998877643 4566665543 2333 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 165 (217)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+++.. ..+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999998888776665432 25789999999999865 3455666665422 235689999999999999
Q ss_pred HHHHHHH
Q 027894 166 AFTEVLT 172 (217)
Q Consensus 166 ~~~~i~~ 172 (217)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=5.3e-29 Score=181.52 Aligned_cols=164 Identities=36% Similarity=0.498 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|.+|+|||||+++|.+..+.....++....+ ...+..++..+.+.+||+||++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888666666654433 444556777788999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
|+++..+++.+..|+..+..... .+.|+++|+||+|+...+....++...++...+++++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999988877766432 57899999999999766666777777888888899999999999999999999999
Q ss_pred HHHHHh
Q 027894 173 QIYHVV 178 (217)
Q Consensus 173 ~~~~~~ 178 (217)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 887554
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.1e-29 Score=181.89 Aligned_cols=159 Identities=30% Similarity=0.503 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999988777777655443 35567888889999999999999888888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+... ..+...+..+++...+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999885 5777776544 57999999999998532 23445677788877764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~ 174 (217)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.1e-29 Score=182.76 Aligned_cols=157 Identities=18% Similarity=0.342 Sum_probs=122.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|||||||+++|..+.+. .+.+|.+.++. .+... .+.+.+||+||++.+...+..+++++|+++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 44699999999999999999999877764 34566665543 33333 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 164 (217)
+|||++++.+++.+..|+..+.... ..+.|++||+||.|+.+. ...++...... ...+.++++||++|+|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999888877765432 257899999999998652 23333333221 123457789999999999
Q ss_pred HHHHHHHHHH
Q 027894 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.2e-29 Score=181.95 Aligned_cols=158 Identities=17% Similarity=0.319 Sum_probs=123.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|||||||+++|..+.+.. +.+|.+.+.. .+.. ..+.+.+||+||++.+..+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 345899999999999999999999877753 4566665443 3333 3478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-----CCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-----NTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~ 164 (217)
+|||++++.+++.+..++..+.... ..+.|++|++||+|+.+. ...++..+..... .+.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999998877776664332 257999999999998753 3334433332211 1246689999999999
Q ss_pred HHHHHHHHHHH
Q 027894 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++|++|.+.+.
T Consensus 168 e~~~~l~~~~~ 178 (181)
T PLN00223 168 EGLDWLSNNIA 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 100
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=182.79 Aligned_cols=166 Identities=35% Similarity=0.513 Sum_probs=153.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|.+|+|||+|..+|....|...+.+|.+ +.+...+.+++..+.+.++||+|++.+..+...++++.|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999987 5566777788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
||+++++.||+.+..++..+.+... ...|+++||||+|+...+.+..+++..++..++++|+++||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999965544 668999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027894 171 LTQIYHVV 178 (217)
Q Consensus 171 ~~~~~~~~ 178 (217)
++.+...+
T Consensus 161 ~r~~~~~~ 168 (196)
T KOG0395|consen 161 VREIRLPR 168 (196)
T ss_pred HHHHHhhh
Confidence 99887744
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=4.4e-29 Score=180.15 Aligned_cols=155 Identities=21% Similarity=0.390 Sum_probs=125.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||+++|.+..+.. +.+|.+.... .+... .+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 5566555443 33333 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN------TFFMETSALESMNVENAF 167 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 167 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..++..+++...+ +.++++||+++.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999888888875432 5689999999999864 356666666654222 368899999999999999
Q ss_pred HHHHHHHHH
Q 027894 168 TEVLTQIYH 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
++|.+.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999877654
No 102
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=6e-29 Score=182.26 Aligned_cols=163 Identities=34% Similarity=0.524 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888766656554443 335556777788999999999888777777789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC----------cccCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH----------LCAVSTEDAKAFAERENT-FFMETSALESM 161 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
|+++..+++.+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++...+++..+. +|+++||+++.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 5888887655 5799999999999843 344566778888888885 79999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 027894 162 NVENAFTEVLTQIYHVV 178 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~~~ 178 (217)
|++++|+++.+.+...+
T Consensus 160 ~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 160 GVDDVFEAATRAALLVR 176 (187)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998886554
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=7e-29 Score=183.47 Aligned_cols=160 Identities=32% Similarity=0.430 Sum_probs=133.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|+|||||+++|+...+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776656553 3445566677877899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCC-cccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRH-LCAVSTEDAKAFAE-RENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++..+... ..+++++++||++|.|++++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888776554 5799999999999865 34455544444443 4567899999999999999999999
Q ss_pred HHHH
Q 027894 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 104
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=4.3e-30 Score=184.45 Aligned_cols=153 Identities=18% Similarity=0.301 Sum_probs=125.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
.|+++|.+|||||||+++|.+..+...+.+|.+... ..++...+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888777777776543 2234455889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH----HHHHHHHHHcCCcEEEeccCC------CCCHH
Q 027894 95 VTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST----EDAKAFAERENTFFMETSALE------SMNVE 164 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~ 164 (217)
.+++.++..+..|+..+.... .++|+++|+||+|+...+.+.. .++..++.+.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888876544 6899999999999976443321 223455566788899999998 99999
Q ss_pred HHHHHHHH
Q 027894 165 NAFTEVLT 172 (217)
Q Consensus 165 ~~~~~i~~ 172 (217)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998764
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=4.2e-29 Score=178.49 Aligned_cols=152 Identities=18% Similarity=0.354 Sum_probs=118.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||++++..+.+.. +.+|.+.... .+... .+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999998887753 5566665543 23333 478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVENAF 167 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
|++++.+++.+..++..+... .....|+++++||+|+.+. ...++...... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877666433 2256899999999998642 22333222221 123457899999999999999
Q ss_pred HHHHH
Q 027894 168 TEVLT 172 (217)
Q Consensus 168 ~~i~~ 172 (217)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 106
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.5e-28 Score=182.75 Aligned_cols=167 Identities=30% Similarity=0.529 Sum_probs=145.4
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+.+....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 45566779999999999999999999999888888889998888888877788889999999999999988889999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
+++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|++++.|+++.
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887655 67899999999998642 33333 34567778899999999999999999
Q ss_pred HHHHHHHHHH
Q 027894 167 FTEVLTQIYH 176 (217)
Q Consensus 167 ~~~i~~~~~~ 176 (217)
|.+|.+.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2e-28 Score=178.59 Aligned_cols=159 Identities=20% Similarity=0.355 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..+||+++|++|||||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998877754 4566665543 3333 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 165 (217)
|+|++++.+++.+..++..+... ...+.|+++|+||.|+.+ ....++...... ...+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999999887777666433 225689999999999864 223333322221 1223577999999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 166 AFTEVLTQIYHV 177 (217)
Q Consensus 166 ~~~~i~~~~~~~ 177 (217)
+|++|.+.+.+-
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999877653
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.5e-28 Score=178.02 Aligned_cols=157 Identities=20% Similarity=0.339 Sum_probs=124.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+++|++|||||||+++|.+..+. ...++.+. ....+.++ .+.+.+|||||++.+...+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3455689999999999999999999987553 34455553 33444454 3778999999999998899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 162 (217)
+++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...++...+.. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999999888877776543 2367999999999998653 24455555543 2457899999999999
Q ss_pred HHHHHHHHHH
Q 027894 163 VENAFTEVLT 172 (217)
Q Consensus 163 v~~~~~~i~~ 172 (217)
++++|+++.+
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=2.9e-28 Score=176.07 Aligned_cols=157 Identities=34% Similarity=0.563 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|++..+...+.++.. ......+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666655554 334445566788889999999999988888888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc-----------cCCHHHHHHHHHHcCC-cEEEeccCCC
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC-----------AVSTEDAKAFAERENT-FFMETSALES 160 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (217)
|++++.++.... .|+..+.... .+.|+++|+||+|+.... .+..++...++...++ +++++||+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999998764 5777776654 589999999999996533 2356777888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027894 161 MNVENAFTEVLT 172 (217)
Q Consensus 161 ~~v~~~~~~i~~ 172 (217)
.|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.4e-28 Score=175.81 Aligned_cols=160 Identities=32% Similarity=0.413 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|||||||+++|.++.+...+..+. ........+.+..+++.+|||||++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998866543321 222333445667789999999999888777777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHHcC--CcEEEeccCCCCCHHHHHH
Q 027894 94 DVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAEREN--TFFMETSALESMNVENAFT 168 (217)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~ 168 (217)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..... .++...++.... .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 6877777655 579999999999997644321 233334444332 3799999999999999999
Q ss_pred HHHHHHHH
Q 027894 169 EVLTQIYH 176 (217)
Q Consensus 169 ~i~~~~~~ 176 (217)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=3.8e-28 Score=178.82 Aligned_cols=147 Identities=24% Similarity=0.401 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-----CeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-----DKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+||+++|.+|+|||||+++|.++.+...+.+|.+.++....+.+. +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877777766663 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccC-------------------CCCCcEEEEEeCCCCCCcccCCHHH----HHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHT-------------------DSNIVIMLVGNKADLRHLCAVSTED----AKAFA 145 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~~----~~~~~ 145 (217)
+|+|||++++.||+.+..|+..+.... ..+.|+++|+||.|+.+++.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986531 2468999999999997655555442 44667
Q ss_pred HHcCCcEEEeccCCC
Q 027894 146 ERENTFFMETSALES 160 (217)
Q Consensus 146 ~~~~~~~~~~Sa~~~ 160 (217)
++.+++.++.++.+.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 889999999998865
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=4.6e-28 Score=173.51 Aligned_cols=152 Identities=18% Similarity=0.325 Sum_probs=117.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+|+++|.+|||||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 4455566664432 2222 3478899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVEN 165 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 165 (217)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ...++++++||+++.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888877765532 2579999999999986532 2233322221 1234589999999999999
Q ss_pred HHHHHHH
Q 027894 166 AFTEVLT 172 (217)
Q Consensus 166 ~~~~i~~ 172 (217)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 113
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=2.2e-27 Score=171.68 Aligned_cols=143 Identities=34% Similarity=0.655 Sum_probs=128.2
Q ss_pred CcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC
Q 027894 36 NEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT 115 (217)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~ 115 (217)
+.|...+.+|.+.++....+.+++..+++.+|||+|++.+...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34666778899999988888889999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 116 DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 116 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
..+.|+++|+||+|+...+.+..+++..++..+++.|+++||++|+|++++|++|.+.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 567899999999999776678888888998888999999999999999999999999887644
No 114
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=9.9e-29 Score=176.98 Aligned_cols=166 Identities=34% Similarity=0.513 Sum_probs=150.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
...+|+.+||...+|||+|+-.+..+.|+..+.+|.- +.+...+.++ ++.+.+.+|||+|++.|+.++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3468999999999999999999999999999999985 7777778885 9999999999999999999888899999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEe
Q 027894 90 LLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMET 155 (217)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 155 (217)
++||++.++.||+++ ..|+.++..++ ++.|+|+||+|.|++++ ..+..+++..++++.| ..|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999997 67999999988 89999999999999742 3677899999999999 569999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh
Q 027894 156 SALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
||++..|++++|+..+...+...
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999999887554
No 115
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=7e-27 Score=180.13 Aligned_cols=191 Identities=21% Similarity=0.348 Sum_probs=146.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-------------CeEEEEEEEeCCCchhh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-------------DKIVKAQIWDTAGQERY 75 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~ 75 (217)
+....+||+++|..|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 34567999999999999999999999999988888898888877766664 24688999999999999
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC------------CCCcEEEEEeCCCCCCcc---c---CC
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD------------SNIVIMLVGNKADLRHLC---A---VS 137 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~ 137 (217)
..++..++++++++|+|||+++..+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999986531 358999999999996542 2 35
Q ss_pred HHHHHHHHHHcCCc-E---------------EEeccCCCCCHHHHHHHHHHHHHHHhhccccCCCCCC-CCCCCCceee
Q 027894 138 TEDAKAFAERENTF-F---------------METSALESMNVENAFTEVLTQIYHVVSRKALDIGGDP-AALPKGQTIN 199 (217)
Q Consensus 138 ~~~~~~~~~~~~~~-~---------------~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 199 (217)
.+++++++++.++. . +-+.|+.+.-=.|.+....+.++..+--...-.-+.+ +..|+++++-
T Consensus 177 ~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (334)
T PLN00023 177 VDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELPAPSPWSLSPQRSSQR 255 (334)
T ss_pred HHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcccCCCCCCcccCCCCcccc
Confidence 78999999988742 1 2233555444456666666666666655444433333 4445555443
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.5e-27 Score=171.76 Aligned_cols=153 Identities=23% Similarity=0.367 Sum_probs=119.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|++|+|||||++++..+.+.. ..++.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999887764 4456554443 33334 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENA 166 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
+|++++.++.....++..+.... ..+.|+++++||+|+.. ....++..+.. ...+++++++||++++|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 99999999888877666665433 25799999999999865 22333332222 224467999999999999999
Q ss_pred HHHHHH
Q 027894 167 FTEVLT 172 (217)
Q Consensus 167 ~~~i~~ 172 (217)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=9.5e-28 Score=172.82 Aligned_cols=151 Identities=23% Similarity=0.366 Sum_probs=119.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
.|+++|.+|||||||+++|.+. +...+.+|.+.. ...+... .+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 555666776654 3344444 3788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHH------HHHHHHc--CCcEEEeccCCC-----
Q 027894 95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDA------KAFAERE--NTFFMETSALES----- 160 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~------~~~~~~~--~~~~~~~Sa~~~----- 160 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ...+. ..++.+. .+.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999888876532 579999999999996533 22222 2223222 356888999998
Q ss_pred -CCHHHHHHHHHH
Q 027894 161 -MNVENAFTEVLT 172 (217)
Q Consensus 161 -~~v~~~~~~i~~ 172 (217)
.|+.+.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=2.4e-27 Score=170.65 Aligned_cols=152 Identities=24% Similarity=0.411 Sum_probs=117.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC------CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFS------LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+|+++|++|+|||||+++|.+.... ..+.++.+... ..+.++ ...+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 12234443333 334444 3789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-------cCCcEEEeccCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-------ENTFFMETSALES 160 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 160 (217)
+++|+|++++.++.....++..+..... .+.|+++++||+|+.. ....++...+... .+++++++||+++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 9999999999999888888777765432 6799999999999865 3444445444432 3467999999999
Q ss_pred CCHHHHHHHHHH
Q 027894 161 MNVENAFTEVLT 172 (217)
Q Consensus 161 ~~v~~~~~~i~~ 172 (217)
+|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=2.4e-27 Score=169.51 Aligned_cols=152 Identities=23% Similarity=0.427 Sum_probs=117.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
+|+++|.+|||||||+++|.+..+... .++.+... ..+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887543 45555443 333332 34789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHH------HHcCCcEEEeccCCCCCHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFA------ERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
.+++.++..+..|+..+..... .+.|+++|+||+|+... ...++..... ...+++++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999999988888777655432 57999999999998542 2233332221 1234569999999999999999
Q ss_pred HHHHH
Q 027894 168 TEVLT 172 (217)
Q Consensus 168 ~~i~~ 172 (217)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.7e-27 Score=168.95 Aligned_cols=151 Identities=21% Similarity=0.378 Sum_probs=119.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|.+|||||||++++.+... ....++.+... ..+.+. .+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999874 33445555443 334344 3679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
++++.++.....++..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888777765543 3679999999999986532 3333333322 2346799999999999999999
Q ss_pred HHHH
Q 027894 169 EVLT 172 (217)
Q Consensus 169 ~i~~ 172 (217)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=8.9e-27 Score=171.22 Aligned_cols=155 Identities=20% Similarity=0.329 Sum_probs=124.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++|||||||++++.+..+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988764 344454433 33444554 678999999999988889999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH----------------cCCcEEE
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER----------------ENTFFME 154 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 154 (217)
|+|+++..+++....++..+..... .+.|+++++||+|+.. .+..++...+... ..+.+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999999888777777765432 5799999999999864 4566666666542 2246899
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 027894 155 TSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~ 173 (217)
+||++++|++++|+++.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999875
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.8e-26 Score=164.73 Aligned_cols=151 Identities=21% Similarity=0.332 Sum_probs=113.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
||+++|++++|||||+++|....+.. ..++.+.+.. .+.. ....+.+|||||++.+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877643 3455544432 3333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHH
Q 027894 95 VTRHVTFENVERWLKELRG-HTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
++++.++.....++..+.. ....+.|+++|+||+|+.+.. ...+...... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9999888776665544432 222579999999999986432 2233322221 1235699999999999999999
Q ss_pred HHHH
Q 027894 169 EVLT 172 (217)
Q Consensus 169 ~i~~ 172 (217)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=2.7e-26 Score=166.25 Aligned_cols=158 Identities=28% Similarity=0.460 Sum_probs=127.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|..|||||||++++..+.... ..||.+.. ...+.+.+ ..+.+||.+|+..++..|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3678999999999999999999998765433 44555544 44555555 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------cCCcEEEeccCCCCC
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER------ENTFFMETSALESMN 162 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~ 162 (217)
|||+|.++.+.+.+....+..+..... .+.|+++++||.|+.+ ....++....... ..+.++.+||.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 999999999988888777766655432 6899999999999865 4555656554432 345599999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQI 174 (217)
Q Consensus 163 v~~~~~~i~~~~ 174 (217)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2.9e-26 Score=167.58 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=121.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|||||||+++|.+..+.. +.++.+.. ...+.+.+ +++.+||+||++.+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 445999999999999999999999886643 23443332 23333443 77899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------------cCCcEEEecc
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER------------ENTFFMETSA 157 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 157 (217)
+|+|++++.++.....++..+.... ..+.|+++|+||+|+.. .++.+++...... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999988887777665432 25789999999999864 4555555544321 1234999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027894 158 LESMNVENAFTEVLTQ 173 (217)
Q Consensus 158 ~~~~~v~~~~~~i~~~ 173 (217)
++++|++++++||.++
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-28 Score=167.82 Aligned_cols=175 Identities=33% Similarity=0.567 Sum_probs=163.7
Q ss_pred cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
..+.+.+..+|++++|..++||||+|++++.+-|...+..+.+.++....+.+....++..+||++|+++|..+..+|++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 44567788999999999999999999999999999999999999998888888887788999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
.+.+.++||+.+|..||+....|++.+.... .++|.++|-||+|+.++.++...+...++++....+|-+|++...|+-
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 9999999999999999999999999998877 689999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 027894 165 NAFTEVLTQIYHVVSR 180 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~ 180 (217)
.+|..+.+.+.++..+
T Consensus 171 ~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887765
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.3e-25 Score=163.49 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=113.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc-------CCCCCCc------ccceeEEEEEE--EE---CCeEEEEEEEeCCCchhhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRSI--RV---EDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~l~Dt~G~~~~~ 76 (217)
+|+++|++++|||||+++|++.. +...+.+ +.+.++..... .+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111111 11233333222 22 5567889999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC---cEE
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT---FFM 153 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 153 (217)
..+..+++.+|++++|+|+++..+++....|..... .++|+++|+||+|+.+.. ......++++..++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 999999999999999999999877776666654332 468999999999985421 22233455555565 389
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 027894 154 ETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
++||++|+|++++|+++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.3e-25 Score=159.78 Aligned_cols=151 Identities=23% Similarity=0.397 Sum_probs=119.8
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (217)
|+++|++|+|||||+++|.+..+...+.++.+..... +..+. +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888887777765543 33333 7899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHH
Q 027894 96 TRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 96 ~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++..++.....++..+.... ..+.|+++|+||+|+.+.. ...+..... ....++++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99998888777766665432 2578999999999986532 222222121 123467899999999999999999
Q ss_pred HHH
Q 027894 170 VLT 172 (217)
Q Consensus 170 i~~ 172 (217)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=9.2e-26 Score=162.55 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh---------hhhhHhhhc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY---------RAITSAYYR 84 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~ 84 (217)
.+|+++|.+|+|||||+++|.+..+.....+..+.......+.. ..+.+.+|||||+... .........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999998764332222222232222222 3478999999997321 011112223
Q ss_pred CCcEEEEEEeCCChhhH--HHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 85 GAVGALLVYDVTRHVTF--ENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
.+|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+........ ...+....+++++++||+++.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 46899999999987653 55566777776543 4799999999999965333222 4455555678899999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQI 174 (217)
Q Consensus 163 v~~~~~~i~~~~ 174 (217)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 129
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=4.3e-25 Score=150.73 Aligned_cols=164 Identities=18% Similarity=0.328 Sum_probs=130.3
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
+..+..++|+++|..||||||++++|.+.... ...||.+++.. ++.+.+ +++.+||.+|+..++..|..|+...|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~Ik--tl~~~~--~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQIK--TLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceeeE--EEEecc--eEEEEEEcCCcchhHHHHHHhhhccC
Confidence 33455899999999999999999999998743 33466555444 443444 78999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHH------HHHHHHHHcCCcEEEeccCCC
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTE------DAKAFAERENTFFMETSALES 160 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
++|+|+|.+|+..+++....+..+.... -.+.|++++.||.|+.. .+..+ ...++++...++++.||+.+|
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence 9999999999999888776666554422 26789999999999973 22222 234555667899999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027894 161 MNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~ 178 (217)
+++.+-++|+++.+.+..
T Consensus 164 e~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 999999999999988743
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=3.7e-25 Score=174.27 Aligned_cols=165 Identities=17% Similarity=0.079 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
...|+++|.||||||||+++|++........+..+.....-.+.+. ....+.+||+||..+ +...+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4679999999999999999999876443333444455555455442 224689999999532 22222334567
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
++++++|+|+++.+++++++.|...+..... .++|+++|+||+|+.+......+....++...+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 9999999999988889999999988877643 47899999999999754444444455555566788999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027894 164 ENAFTEVLTQIYHVV 178 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~ 178 (217)
++++++|.+.+.+..
T Consensus 317 ~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 317 DELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999877543
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.3e-25 Score=162.10 Aligned_cols=157 Identities=19% Similarity=0.118 Sum_probs=111.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch----hhhhhhHh---hhcCCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----RYRAITSA---YYRGAV 87 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~---~~~~~d 87 (217)
+|+++|.+|||||||+++|.+........+..+.......+.+.+ ...+.+|||||.. ........ .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 699999999999999999997654322222222222223333333 2478999999963 11122222 345699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCH
Q 027894 88 GALLVYDVTRH-VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNV 163 (217)
Q Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 163 (217)
++++|+|++++ .+++.+..|+..+..... .+.|+++|+||+|+.+.... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999999 789988888888876542 46899999999998654332 3344455555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 027894 164 ENAFTEVLTQ 173 (217)
Q Consensus 164 ~~~~~~i~~~ 173 (217)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=1.9e-25 Score=165.98 Aligned_cols=158 Identities=22% Similarity=0.180 Sum_probs=115.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch---------hhhhhhH
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE---------RYRAITS 80 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~ 80 (217)
.+..++|+++|++|||||||++++++..+.....+..+.......+.+.+. ..+.+|||||.. .+...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355689999999999999999999998754433333334444444444442 368999999962 122222
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... ...+...+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCC
Confidence 23678999999999999988888777777776655467899999999998653221 1344456678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~v~~~~~~i~~~~ 174 (217)
.|+++++++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=4.6e-25 Score=159.69 Aligned_cols=157 Identities=18% Similarity=0.291 Sum_probs=116.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|++|||||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 34457999999999999999999999876543 335555433 3333444 678999999999888888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-----CCcEEEeccCCCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-----NTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~ 162 (217)
+++|+|+++..++.....++..+.... ..++|+++++||+|+.... ..++..+..... .++++++||++++|
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 999999999988888777666554432 2579999999999985422 222222221111 12478999999999
Q ss_pred HHHHHHHHHH
Q 027894 163 VENAFTEVLT 172 (217)
Q Consensus 163 v~~~~~~i~~ 172 (217)
++++|+||.+
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.4e-24 Score=154.14 Aligned_cols=157 Identities=38% Similarity=0.526 Sum_probs=126.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999997777777777777777677777668899999999999988888889999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 93 YDVTRH-VTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|.... .++.... .|+..+......+.|+++++||+|+.... ........+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999877 6666554 56666655543478999999999986533 33333334444456779999999999999999886
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=5.6e-24 Score=159.68 Aligned_cols=170 Identities=39% Similarity=0.576 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|+.|||||||+++|.+..+...+.++.+..+...........+++.+|||+|++.++..+..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988888887777777776665578999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHc---CCcEEEec
Q 027894 93 YDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERE---NTFFMETS 156 (217)
Q Consensus 93 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 156 (217)
+|..+ ..+++....|...+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5555666889988887775679999999999997643 22222222222222 23389999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHhhccc
Q 027894 157 AL--ESMNVENAFTEVLTQIYHVVSRKA 182 (217)
Q Consensus 157 a~--~~~~v~~~~~~i~~~~~~~~~~~~ 182 (217)
++ .+.++.++|..+...+.+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 99 999999999999999987665443
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.7e-24 Score=155.18 Aligned_cols=151 Identities=19% Similarity=0.135 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
.|+++|.+|+|||||+++|.+.. +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999998643 2222223334444444444442 3578999999999887777778889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHH---cCCcEEEeccCCCCCH
Q 027894 92 VYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAER---ENTFFMETSALESMNV 163 (217)
Q Consensus 92 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v 163 (217)
|+|+++ ..+.+.+ ..+... ...|+++++||+|+..... ...++..+.... .+.+++++||++++|+
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 3333222 222211 2248999999999865321 112334444444 4678999999999999
Q ss_pred HHHHHHHHH
Q 027894 164 ENAFTEVLT 172 (217)
Q Consensus 164 ~~~~~~i~~ 172 (217)
+++|+.+..
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988753
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.1e-24 Score=152.72 Aligned_cols=134 Identities=23% Similarity=0.240 Sum_probs=99.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-----hhhhhhHhhhcCCcEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-----RYRAITSAYYRGAVGA 89 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~i 89 (217)
||+++|.+|+|||||+++|.+..+. +.++.+. .+.. .+|||||+. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999987652 2222221 1222 689999972 233333 357899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENAFT 168 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 168 (217)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++..++++..+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 2343322 248999999999864 33456667777777776 799999999999999998
Q ss_pred HHH
Q 027894 169 EVL 171 (217)
Q Consensus 169 ~i~ 171 (217)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.2e-23 Score=151.40 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=109.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
.|+++|.+|+|||||+++|....+......+.+.+.....+... .....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999988766544444333333334333 13467899999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-HHHHHHHHH------HcCCcEEEeccCCCCCHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-TEDAKAFAE------RENTFFMETSALESMNVENA 166 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|+++....+.... +..+.. .+.|+++|+||+|+....... ......+.. ...++++++|+++++|+.++
T Consensus 82 d~~~~~~~~~~~~-~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIEA-IKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHHH-HHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9988543222221 222322 468999999999986422111 111111111 12367999999999999999
Q ss_pred HHHHHHHHH
Q 027894 167 FTEVLTQIY 175 (217)
Q Consensus 167 ~~~i~~~~~ 175 (217)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.3e-23 Score=146.69 Aligned_cols=153 Identities=49% Similarity=0.761 Sum_probs=121.2
Q ss_pred EEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC
Q 027894 18 LIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 18 vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
++|++|+|||||++++.+... .....++. ................+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999887 44444444 6666667766677889999999999888888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHhccCCCCCcEEEEEeCCCCCCcccCCHHH-HHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 97 RHVTFENVERWL-KELRGHTDSNIVIMLVGNKADLRHLCAVSTED-AKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 97 ~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
++.++..+..|. .........+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988887762 22233334789999999999986543333222 3455556678999999999999999999875
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.1e-23 Score=167.11 Aligned_cols=155 Identities=23% Similarity=0.180 Sum_probs=114.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAITSA 81 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~ 81 (217)
+..++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|. +.+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 45589999999999999999999998754333344455666666666432 47899999996 2333332 3
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM 161 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
.+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.... ..... .....+++++||+++.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCC
Confidence 47899999999999999888877766666655444578999999999985421 11111 1223468999999999
Q ss_pred CHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQ 173 (217)
Q Consensus 162 ~v~~~~~~i~~~ 173 (217)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 141
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.6e-23 Score=164.84 Aligned_cols=160 Identities=19% Similarity=0.128 Sum_probs=117.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHh---hhcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSA---YYRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~ 85 (217)
...|+++|.+|||||||+++|++........+..+.....-.+.+++ ...+.+||+||... ...+... .+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46899999999999999999998764333333334444444454443 35689999999632 1122223 3457
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 86 AVGALLVYDVTRH---VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
++++++|+|+++. .+++++..|...+..... .+.|+++|+||+|+.+... ..+..+.+....+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999987 678888888887766532 4789999999999865422 234445566666788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~v~~~~~~i~~~~ 174 (217)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=160.16 Aligned_cols=153 Identities=22% Similarity=0.226 Sum_probs=104.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC-----------chhhhhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG-----------QERYRAIT 79 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~ 79 (217)
...++|+++|.+|+|||||+++|.+..+.....++ .+.....+.+. .+.+||||| ++.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45689999999999999999999998765444443 33333333333 489999999 56666666
Q ss_pred Hhhhc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH
Q 027894 80 SAYYR----GAVGALLVYDVTRHVTF-E---------NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA 145 (217)
Q Consensus 80 ~~~~~----~~d~ii~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 145 (217)
..++. .++++++|+|.+....+ + ....+...+.. .++|+++|+||+|+.+.. .+...++.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHHHH
Confidence 55554 35788888887653221 0 01112222222 478999999999986432 33445555
Q ss_pred HHcCC---------cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 146 ERENT---------FFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 146 ~~~~~---------~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
...++ +++++||+++ |++++|++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 55554 5899999999 999999999887643
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=2.1e-23 Score=148.66 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=110.4
Q ss_pred EEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhhhc--CCcEE
Q 027894 18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA------ITSAYYR--GAVGA 89 (217)
Q Consensus 18 vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~i 89 (217)
++|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999875554445555655555666665 5789999999866543 3455554 89999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|+|+.++.+.. .+...+.. .++|+++|+||+|+.+...... ....+....+++++++||+++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 33333333 4689999999999975443333 345666777899999999999999999999
Q ss_pred HHHHH
Q 027894 170 VLTQI 174 (217)
Q Consensus 170 i~~~~ 174 (217)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98764
No 144
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=9.1e-24 Score=141.69 Aligned_cols=155 Identities=24% Similarity=0.394 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+++.++|-.+||||||++....+.+.....++.|+... .+....+.+.+||.||+..++..|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 578999999999999999999999988888888875443 3455568899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--------CCcEEEeccCCCCCH
Q 027894 93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--------NTFFMETSALESMNV 163 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v 163 (217)
+|+.+++.++.....+..+.... -.++|+++.+||.|++.. .... .+..+. .+..|.+|+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence 99999998887766555554433 378999999999999762 2222 223333 355899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYH 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+.+.+|++++--.
T Consensus 171 d~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 171 DITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987643
No 145
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=2.9e-23 Score=160.30 Aligned_cols=154 Identities=20% Similarity=0.132 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhhhcCC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--------RAITSAYYRGA 86 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~ 86 (217)
+|+++|.+|||||||+|+|++..+...+....++......+...+ ..++.+|||||.... ......++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999876543332222222222332222 256899999996421 12234567899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVEN 165 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 165 (217)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.. ...+....+....++ +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999877654 344444433 468999999999985321 122333444444444 799999999999999
Q ss_pred HHHHHHHHHH
Q 027894 166 AFTEVLTQIY 175 (217)
Q Consensus 166 ~~~~i~~~~~ 175 (217)
+++++.+.+.
T Consensus 155 L~~~l~~~l~ 164 (270)
T TIGR00436 155 LAAFIEVHLP 164 (270)
T ss_pred HHHHHHHhCC
Confidence 9999988763
No 146
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=146.03 Aligned_cols=159 Identities=19% Similarity=0.351 Sum_probs=129.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
....+|+++|--++||||++.+|..++.-.. .||.|..... +.+. ++.+.+||..|+++++..|..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4578999999999999999999998887555 5776655444 4444 588999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 164 (217)
||+|.+|+.-+..++..+..+..... .+.|+++++||.|++. ..+..++...... ..+.+..++|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999999988777766666554 7899999999999976 3444444433332 34568889999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYH 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
+.++|+.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999987753
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.7e-23 Score=154.18 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT 79 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (217)
-+|+++|.+++|||||+++|+. ..+.... ..+.+.+.......+......+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999997 4443322 1223444444444455556789999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc-CCHHHHHHHHH-------HcCCc
Q 027894 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA-VSTEDAKAFAE-------RENTF 151 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 151 (217)
..+++.+|++++|+|+++.. +.....++..+.. .+.|+++|+||+|+..... ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998743 2333334444332 4689999999999864221 12334444442 23678
Q ss_pred EEEeccCCCCCHHHH
Q 027894 152 FMETSALESMNVENA 166 (217)
Q Consensus 152 ~~~~Sa~~~~~v~~~ 166 (217)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887543
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.4e-23 Score=146.92 Aligned_cols=148 Identities=20% Similarity=0.217 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh------hhhhhHhhh--cC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER------YRAITSAYY--RG 85 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~~--~~ 85 (217)
++|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..+.++|+||.-. .......++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999986665667777777777777777 5689999999311 122333333 68
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
.|++++|+|+++.+ .--.+...+.. .++|+++++||+|......+.. +...+.+..++|++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998743 22233333333 5699999999999865433332 35666777899999999999999999
Q ss_pred HHHHH
Q 027894 166 AFTEV 170 (217)
Q Consensus 166 ~~~~i 170 (217)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=2.6e-23 Score=150.78 Aligned_cols=155 Identities=23% Similarity=0.199 Sum_probs=107.2
Q ss_pred EEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh----hhh---hHhhhcCCcEEE
Q 027894 18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY----RAI---TSAYYRGAVGAL 90 (217)
Q Consensus 18 vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~ii 90 (217)
++|++|||||||+++|.+........+..+.......+.+.+ ...+.+|||||.... ... ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999865222222222333333343441 356899999996321 112 234567899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHhccCC-------CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 91 LVYDVTRH------VTFENVERWLKELRGHTD-------SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 91 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
+|+|+++. .+++.+..|...+..... .+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999988 577777777776654432 36899999999999654333332223444445678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027894 158 LESMNVENAFTEVLTQ 173 (217)
Q Consensus 158 ~~~~~v~~~~~~i~~~ 173 (217)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 150
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-22 Score=136.91 Aligned_cols=172 Identities=24% Similarity=0.341 Sum_probs=142.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC--CCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhh-hhhhHhhhcCCc
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERY-RAITSAYYRGAV 87 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d 87 (217)
...||+++|..++|||+++..++-++..+. ..+|....+ ...+.. .+..-.+.++||.|.... ..+..+|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 357999999999999999999988765553 335554333 333333 445567899999997655 677889999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
++++||+..+++||+.++.+...|..... .++|+++.+||+|+.+..++..+.+..|++...+.++++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998877777777665 77999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccC
Q 027894 167 FTEVLTQIYHVVSRKALD 184 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~ 184 (217)
|..+...+.+.+.+....
T Consensus 167 f~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFP 184 (198)
T ss_pred HHHHHHhccCCcccccCc
Confidence 999999988777655443
No 151
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=1.2e-22 Score=149.50 Aligned_cols=159 Identities=18% Similarity=0.114 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC----cCCCCC---CcccceeEEEEEEEEC------------CeEEEEEEEeCCCchh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN----EFSLES---KSTIGVEFATRSIRVE------------DKIVKAQIWDTAGQER 74 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~----~~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~ 74 (217)
++|+++|++|+|||||+++|+.. .+.... .+..+.......+.+. .....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111111 1122223222222222 2357899999999876
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHH------
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAE------ 146 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~------ 146 (217)
+..........+|++++|+|+++.......+.+. .... .+.|+++++||+|+..... ...++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6444445567789999999998865444433322 1111 2579999999999863221 11222222111
Q ss_pred -HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 147 -RENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 147 -~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
..+++++++||++++|++++++++.+.+..
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135789999999999999999999988764
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=3.7e-22 Score=141.89 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHhhhc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA--------ITSAYYR 84 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 84 (217)
++|+++|++|+|||||++++.+..... ...++.+.......+...+ .++.+|||||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876422 2223333334344444443 5789999999644321 2234567
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998887766544433 257999999999998653322 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027894 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=3.7e-22 Score=162.77 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=116.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhH
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA--------ITS 80 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~ 80 (217)
....++|+++|.+|+|||||+|+|++..... ...++.+.+.....+.+++ ..+.+|||||...+.. ...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 3456899999999999999999999875422 2234445566666666766 4578999999754322 124
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... ....++...+.+++.+||++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 577899999999999998887665 6555532 46899999999998542 12344556678899999997
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027894 161 MNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~ 178 (217)
.|++++|+.+.+.+.+..
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999887765
No 154
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=7.1e-22 Score=159.40 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhh---hcCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSAY---YRGA 86 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~ 86 (217)
..|+++|.+|||||||+++|++........+..+.....-.+.+.+ ...+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4899999999999999999998764433334434444444444431 25689999999532 22233333 4569
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 027894 87 VGALLVYDVTRH---VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM 161 (217)
Q Consensus 87 d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
+++++|+|+++. +++++...|...+..... .++|++||+||+|+.. ..+....+.+..+.+++++||++++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999865 677788888888776543 4789999999999843 2344556666667889999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 027894 162 NVENAFTEVLTQIYHVV 178 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~~~ 178 (217)
|+++++++|.+.+.+..
T Consensus 314 GI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 314 GLDELLYAVAELLEETP 330 (424)
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999998887654
No 155
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=7.8e-23 Score=139.07 Aligned_cols=114 Identities=35% Similarity=0.599 Sum_probs=88.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC--CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFS--LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
||+|+|++|||||||+++|.+.... .......+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 12233444555555666677766799999999998888888789999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHhccCCCCCcEEEEEeCCC
Q 027894 93 YDVTRHVTFENVERW---LKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~iiv~nK~D 129 (217)
||++++.|++.+..+ +..+.... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999987554 55555433 5699999999998
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.9e-22 Score=147.77 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCc----------------ccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKS----------------TIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
+|+++|.+|+|||||+++|++......... ..+.......+... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999999876554311 11222222223233 467899999999988888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHHH---------
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAER--------- 147 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~--------- 147 (217)
+..+++.+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+..+... ..+...+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 88899999999999999887654333 33333332 57999999999998652211 12233333332
Q ss_pred -----cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 148 -----ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 148 -----~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
...+++++||+++.|++++|+++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356799999999999999999998875
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=3.4e-22 Score=165.26 Aligned_cols=162 Identities=22% Similarity=0.199 Sum_probs=114.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh-
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAIT- 79 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~- 79 (217)
..++|+++|.+|+|||||+++|++.... ....++.+.+.....+.+++. .+.+|||||. +.+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4699999999999999999999998753 233344555555556666664 4679999994 3333322
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHH-HHHHcCCcEEEec
Q 027894 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKA-FAERENTFFMETS 156 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~S 156 (217)
..+++.+|++++|+|++++.+++++. ++..+.. .+.|+++|+||+|+.+.... ...+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34578999999999999998887764 3344432 57899999999999642111 1111211 2222347899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q 027894 157 ALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
|++|.|++++|+.+.+.+.....
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999887765443
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=2.3e-22 Score=159.45 Aligned_cols=156 Identities=24% Similarity=0.344 Sum_probs=106.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchh-hhh-------hhHh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRA-------ITSA 81 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~-------~~~~ 81 (217)
+..++|+++|.+|||||||+++|++..+..... +..+.......+..++ .++.+|||||... +.. ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999987753221 2222233333444444 4689999999732 211 1223
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSAL 158 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 158 (217)
.+..+|++++|+|..+ ++.... .|+..+.. .+.|.++|+||+|+.+. ...+..+++.... ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999765 344443 34455543 34677889999998642 2344555555443 579999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~~ 176 (217)
+|.|++++|++|.+.+.+
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999887654
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=2.7e-22 Score=142.93 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=101.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch----hhhhhhHhhhcCCcEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----RYRAITSAYYRGAVGAL 90 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~ii 90 (217)
+|+++|.+|+|||||++++.+... . ...+ ..+.+... .+|||||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999876531 1 1111 11222222 269999962 22222234478999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC--cEEEeccCCCCCHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT--FFMETSALESMNVENAFT 168 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~~ 168 (217)
+|+|+++..++. ..|+..+. .+.|+++++||+|+.+ ...+...+++...++ +++++||++++|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999887652 23333321 4678999999999854 345666777777775 899999999999999999
Q ss_pred HHHHHHHHHh
Q 027894 169 EVLTQIYHVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
.+.+.+.+..
T Consensus 141 ~l~~~~~~~~ 150 (158)
T PRK15467 141 YLASLTKQEE 150 (158)
T ss_pred HHHHhchhhh
Confidence 9988776544
No 160
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=5.1e-22 Score=167.23 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=117.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCc------ccceeEEEEE--EEE---CCeEEEEEEEeCCCchh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRS--IRV---EDKIVKAQIWDTAGQER 74 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~~ 74 (217)
.-+|+++|+.++|||||+++|+... +...+.. ..+.++.... +.+ ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998752 1111211 1234444333 323 45568899999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC---c
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT---F 151 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 151 (217)
|...+..++..+|++++|+|+++..+.+....|...+. .+.|+++|+||+|+.... ......++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99899999999999999999999877777766655443 468999999999986421 12223445555555 3
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 152 FMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 152 ~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
++++||++|.|++++|++|.+.+...
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 89999999999999999998877543
No 161
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=5.6e-22 Score=161.97 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhh---hHhhhcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAI---TSAYYRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~---~~~~~~~ 85 (217)
...|+|+|.+|||||||+++|++........+..+.....-.+.+.+ ..+.+||+||... ...+ ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 57899999999999999999998765443334444555555555555 5789999999421 1111 1224577
Q ss_pred CcEEEEEEeCCC----hhhHHHHHHHHHHHhccC-----------CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC
Q 027894 86 AVGALLVYDVTR----HVTFENVERWLKELRGHT-----------DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT 150 (217)
Q Consensus 86 ~d~ii~v~d~~~----~~s~~~~~~~~~~l~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (217)
+|++++|+|+++ .+.++++..+...+..+. ..+.|+++|+||+|+.+.... .+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 999999999985 345555555555554332 146899999999998643322 2223333445678
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 151 FFMETSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
+++++||++++|+++++++|.+.+...+..
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999998876643
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=3.1e-22 Score=162.34 Aligned_cols=162 Identities=24% Similarity=0.196 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--hhh------hHhhhc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--RAI------TSAYYR 84 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------~~~~~~ 84 (217)
.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+. ... +...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999997765434444455555555655442 25789999997321 111 223468
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 163 (217)
.+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|+|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 899999999999998887776555555444435799999999999854211 1111 1123455 588999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 027894 164 ENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~~~ 180 (217)
++++++|.+.+......
T Consensus 351 deL~e~I~~~l~~~~~~ 367 (426)
T PRK11058 351 PLLFQALTERLSGEVAQ 367 (426)
T ss_pred HHHHHHHHHHhhhccEE
Confidence 99999999998655433
No 163
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=9.3e-23 Score=138.14 Aligned_cols=167 Identities=28% Similarity=0.535 Sum_probs=145.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
-.-.++|.++|.+..|||||+-.+.++.+...+..+.|..+..+.+.+.+..+.+.+||..|++++.....-...++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34579999999999999999999999999888889999999999999999999999999999999988888888899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-----cccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-----LCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|+||++.+.++..+..|+.+.+.....-+| |+||+|.|.-- ..+.....++.+++-.+++++++|+..+.|+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999999887755555 66899999731 11222344667788899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYHV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
.+|.-++..++..
T Consensus 176 KIFK~vlAklFnL 188 (205)
T KOG1673|consen 176 KIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999888754
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=4e-22 Score=163.35 Aligned_cols=149 Identities=22% Similarity=0.219 Sum_probs=112.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh--------hHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI--------TSAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 82 (217)
..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||.+.+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999997653 23334444555556666665 56899999997543221 2346
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||+++.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999888776544433 2578999999999986432211 33467799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIYH 176 (217)
Q Consensus 163 v~~~~~~i~~~~~~ 176 (217)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=3.7e-22 Score=141.95 Aligned_cols=146 Identities=21% Similarity=0.126 Sum_probs=100.3
Q ss_pred EEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHhhhcCCc
Q 027894 17 VLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA--------ITSAYYRGAV 87 (217)
Q Consensus 17 ~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 87 (217)
+++|.+|+|||||+++|.+..... ...+..+.+.........+ ..+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875321 1222223333333444444 5789999999766432 3345678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 166 (217)
++++|+|..++.+.... .+...+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999876554432 22233322 35899999999998653221 223334555 7899999999999999
Q ss_pred HHHHHHH
Q 027894 167 FTEVLTQ 173 (217)
Q Consensus 167 ~~~i~~~ 173 (217)
|+++.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.4e-22 Score=163.67 Aligned_cols=155 Identities=23% Similarity=0.216 Sum_probs=109.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE--------RYRAITSAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~ 82 (217)
...+|+++|.+|||||||+++|++..... ...++.+.+.....+.+.+ ..+.+|||||.+ .+...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34799999999999999999999876432 2334444444444555555 458899999965 234445667
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
++.+|++++|+|++++.++.. ..+...+.. .+.|+++|+||+|+... ..+....+....+ .++++||++|.|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 889999999999998766543 334444432 56999999999998542 1122222222223 357899999999
Q ss_pred HHHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIYH 176 (217)
Q Consensus 163 v~~~~~~i~~~~~~ 176 (217)
++++|++|.+.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999988754
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.2e-21 Score=162.66 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=112.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
...+|+++|++++|||||+++|.+..+.....++.+.+.....+.+.+. ..+.+|||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4578999999999999999999998776655454555555555555432 268999999999999888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCCC
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESMN 162 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~ 162 (217)
|+|+++...-+..+.+ .... ..++|+++++||+|+... ..++....+...+ .+++++||++|+|
T Consensus 165 VVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999875433333222 2222 256899999999998542 2333333332222 4699999999999
Q ss_pred HHHHHHHHHH
Q 027894 163 VENAFTEVLT 172 (217)
Q Consensus 163 v~~~~~~i~~ 172 (217)
++++|+++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999874
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.1e-21 Score=145.32 Aligned_cols=160 Identities=20% Similarity=0.177 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEEEC---------------------------C----
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRVE---------------------------D---- 59 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------------~---- 59 (217)
++|+++|+.|+|||||+..+.+..... ......+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997652111 111111111111111110 1
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--C
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--S 137 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~ 137 (217)
...++.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157899999999998888888888999999999998742111111222222221 22578999999998642211 1
Q ss_pred HHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 138 TEDAKAFAERE---NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 138 ~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.++...++... +++++++||++++|++++|++|.+.+.
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 13333444332 578999999999999999999886543
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2.1e-21 Score=159.54 Aligned_cols=161 Identities=22% Similarity=0.168 Sum_probs=110.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-----------h
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-----------I 78 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 78 (217)
...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++ ..+.+|||||...... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999876432 2223333334344444555 3689999999643221 1
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-HH----cCCcEE
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-ER----ENTFFM 153 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~ 153 (217)
...+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+... ....++..... .. ..++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 234678999999999999987766653 3333332 46899999999998621 11112222221 11 247899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 154 ETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
++||++|.|++++|+++.+.+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998776543
No 170
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=5e-21 Score=153.69 Aligned_cols=162 Identities=20% Similarity=0.115 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRGA 86 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 86 (217)
..|+++|.||||||||+|+|++........+..+.....-.+.+.+ ...+.++||||... ........+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4899999999999999999998765333334444444444444432 23589999999532 111122346789
Q ss_pred cEEEEEEeCC---ChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccCC
Q 027894 87 VGALLVYDVT---RHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSALE 159 (217)
Q Consensus 87 d~ii~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 159 (217)
|++++|+|++ +...++....|+..+..... .+.|+++|+||+|+.....+ .+...++....+ .+++++||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999998 45667777778777766432 46899999999998643222 233444544444 4689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~~ 177 (217)
+.|++++++.|.+.+.+.
T Consensus 318 g~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CcCHHHHHHHHHHHhhhC
Confidence 999999999999988654
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=5.5e-21 Score=141.02 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=106.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAI 78 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~ 78 (217)
..+..++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4456799999999999999999999997644444444444433333322 257899999993 344444
Q ss_pred hHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHHHcCCcEE
Q 027894 79 TSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAERENTFFM 153 (217)
Q Consensus 79 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 153 (217)
...++..+ +++++++|.+++.+.... .+...+.. .+.|+++++||+|+....+. ..+++.........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 55555544 678888998876543322 11222221 46889999999998542211 12223344444467899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 027894 154 ETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
++||++++|++++++.|.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999987665
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=1.1e-20 Score=136.41 Aligned_cols=155 Identities=22% Similarity=0.195 Sum_probs=103.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchhh----------h-hhhH
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY----------R-AITS 80 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~-~~~~ 80 (217)
.++|+++|.+|+|||||+++|++....... .+..+.......+..++ ..+.+|||||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999987643222 22222333333444454 45789999995322 1 1123
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-HHHHc----CCcEEEe
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-FAERE----NTFFMET 155 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~ 155 (217)
..+..+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+........+.... +.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3567899999999999987765442 3333322 468999999999986543222222222 22222 3679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027894 156 SALESMNVENAFTEVLTQ 173 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~ 173 (217)
||++++|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988753
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=5.1e-21 Score=137.10 Aligned_cols=156 Identities=23% Similarity=0.182 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--------RAITSAYYR 84 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 84 (217)
..+|+++|.+|+|||||+++|.+...........+........ .......+.+|||||.... .......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876543332222222212222 2233467899999995422 223345678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 163 (217)
.+|++++|+|++++.+.. ...+...+.. .+.|+++|+||+|+........+....+.... ..+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 899999999999873211 2223333332 35889999999998643323333344444444 367999999999999
Q ss_pred HHHHHHHHHH
Q 027894 164 ENAFTEVLTQ 173 (217)
Q Consensus 164 ~~~~~~i~~~ 173 (217)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 174
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=6.1e-21 Score=160.65 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+.|+++|++++|||||+++|++.. ++.....+.+.+.....+...+ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999743 3334445556666666666655 77899999999999988888899999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC--CHHHHHHHHHHc----CCcEEEeccCCC
Q 027894 91 LVYDVTRH---VTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV--STEDAKAFAERE----NTFFMETSALES 160 (217)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 160 (217)
+|+|++++ .+.+.+ ..+.. .++| +++|+||+|+.+.... ..++...+.... +++++++||+++
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999984 333332 22222 3566 9999999999653322 233455555544 578999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027894 161 MNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~ 178 (217)
+|++++++.+.+.+....
T Consensus 152 ~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 152 QGIGELKKELKNLLESLD 169 (581)
T ss_pred CCchhHHHHHHHHHHhCC
Confidence 999999998887765543
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=4.1e-21 Score=139.80 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=100.7
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYR 76 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~ 76 (217)
+.+.+..++|+++|.+|+|||||+++|.+..+.....++.+.+.....+..+. .+.+|||||. +.+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 34557789999999999999999999999864333334444444333333332 5899999994 2344
Q ss_pred hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHHHHHHHHcC--
Q 027894 77 AITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDAKAFAEREN-- 149 (217)
Q Consensus 77 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~-- 149 (217)
.....+++ .++++++|+|.+++.+..+.. ++..+.. .+.|+++++||+|+.... ....++++......+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 44445554 357999999998865544442 2333332 468999999999985422 112344445555443
Q ss_pred CcEEEeccCCCCCHH
Q 027894 150 TFFMETSALESMNVE 164 (217)
Q Consensus 150 ~~~~~~Sa~~~~~v~ 164 (217)
+.++++||++++|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 579999999999973
No 176
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8.8e-21 Score=126.43 Aligned_cols=156 Identities=21% Similarity=0.417 Sum_probs=124.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|-.++||||++..|..+.. ....+|.|+. +..+++ +++.+.+||.+|++..+..|++|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFn--vetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFN--VETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-ccccccccee--EEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 368999999999999999999987664 3344665544 444444 44889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 165 (217)
|+|..+.+-++++...+..+..... .+.|+++..||.|+++ .....++..+... ..+.+.++++.++.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999888777665555554443 6789999999999986 4455666655433 345689999999999999
Q ss_pred HHHHHHHHH
Q 027894 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
-|.|+.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998765
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=5.8e-21 Score=149.27 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=105.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhhhc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY--------RAITSAYYR 84 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 84 (217)
.-.|+++|.+|||||||+|+|++......+....++......+... ...++.+|||||.... .......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4569999999999999999999987654433322222222222222 2367999999995321 233344678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCCH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 163 (217)
.+|++++|+|+++..+- .....+..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 89999999999883221 1222233333 2468999999999986322223334444444444 56999999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIY 175 (217)
Q Consensus 164 ~~~~~~i~~~~~ 175 (217)
+++++++.+.+.
T Consensus 160 ~~L~~~L~~~l~ 171 (292)
T PRK00089 160 DELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHhCC
Confidence 999999988764
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=8.1e-21 Score=161.64 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=113.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccccee--EEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--FATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....|+++|+.++|||||+++|....+.....++.+.+ .+...+...+....+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 355799999999999999999999887755443333322 222333333455789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHH-------HHHcC--CcEEEeccCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF-------AEREN--TFFMETSALE 159 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 159 (217)
+++|+|+++....+..+.+ ..+. ..++|+|+++||+|+... ..++.... ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999885433333332 2222 256899999999998642 12222221 12233 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~ 174 (217)
|.|++++|++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999988764
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=5.9e-21 Score=139.97 Aligned_cols=159 Identities=23% Similarity=0.251 Sum_probs=108.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------------CcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
..+|+++|+.++|||||+.+|+........ ....+.......+........+.++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 579999999999999999999865422111 11222333333333123447899999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc-CCHHHHH-HHHHHc----
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA-VSTEDAK-AFAERE---- 148 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~-~~~~~~---- 148 (217)
|.......+..+|++++|+|+.++......+ .+..+.. .+.|+++|+||+|+...+. ...++.. .+.+..
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~-~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEE-HLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHH-HHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred eeecccceecccccceeeeeccccccccccc-ccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 9888888899999999999999875543332 3333333 5688999999999862110 1112222 333333
Q ss_pred --CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 149 --NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 149 --~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.++++++||++|.|++++++.|.+.+.
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999988764
No 180
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=5.8e-21 Score=143.83 Aligned_cols=162 Identities=22% Similarity=0.143 Sum_probs=115.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ--------ERYRAITSAYY 83 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~ 83 (217)
..--|+++|.||+|||||+|++++......+....++......+...+ ..++.++||||. +.+.......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 345789999999999999999999998887776666666666554433 578999999993 22334455667
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC-CcEEEeccCCCCC
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN-TFFMETSALESMN 162 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 162 (217)
..+|+++||+|+++...- ..+..++.+.. .+.|+++++||+|..............+..... ..++++||+++.|
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 899999999999885432 12233344433 457999999999986544322222333333333 3599999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027894 163 VENAFTEVLTQIYHVV 178 (217)
Q Consensus 163 v~~~~~~i~~~~~~~~ 178 (217)
++.+.+.+..++.+.-
T Consensus 160 ~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 160 VDTLLEIIKEYLPEGP 175 (298)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999998888776543
No 181
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.6e-22 Score=138.08 Aligned_cols=162 Identities=31% Similarity=0.542 Sum_probs=143.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
-..++++++|..|.||||++++++.+.|...+.+|.+...+...+.-+...+++..|||.|++.+..+...++-+..+++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 56899999999999999999999999999999999999988887766666799999999999999999999998999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
++||+....++..+.+|...+.+.+ .++|+++.+||.|..+.. .....-.+..+.++.||++|++.+.|+..-|.|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 9999999999999999999999888 679999999999986532 2333445566678999999999999999999999
Q ss_pred HHHHH
Q 027894 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
...+.
T Consensus 165 arKl~ 169 (216)
T KOG0096|consen 165 ARKLT 169 (216)
T ss_pred hhhhc
Confidence 88775
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.4e-20 Score=160.13 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=112.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
......|+++|+.++|||||+++|.+..+........+.+.....+.+.+ ..+.||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 34568899999999999999999988776554444444444444455554 5789999999999999998889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-------HHHHcC--CcEEEeccCCC
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-------FAEREN--TFFMETSALES 160 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~ 160 (217)
++|||+++...-+..+.| ..+. ..++|+|+++||+|+... ..+.... +...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a~---~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHAK---AAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH---hcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999999885432222222 2222 257899999999998542 1122211 122233 68999999999
Q ss_pred CCHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQ 173 (217)
Q Consensus 161 ~~v~~~~~~i~~~ 173 (217)
.|++++|++|...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999999864
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=3.6e-20 Score=156.28 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=115.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc--CC-----CCC------CcccceeEEEE--EEEE---CCeEEEEEEEeCCCch
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE--FS-----LES------KSTIGVEFATR--SIRV---EDKIVKAQIWDTAGQE 73 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~--~~-----~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~ 73 (217)
..-+|+++|+.++|||||+.+|+... +. ... ....++++... .+.+ ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999998732 11 000 01122333222 2222 4556889999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc--
Q 027894 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-- 151 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 151 (217)
.|...+..++..+|++++|+|++++...+....|..... .+.|+++|+||+|+.... ......++....++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 999889999999999999999998776666666654432 468999999999985422 122233444444554
Q ss_pred -EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 152 -FMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 152 -~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
++++||+++.|+++++++|.+.+...
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999887654
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.6e-20 Score=158.35 Aligned_cols=146 Identities=20% Similarity=0.174 Sum_probs=108.6
Q ss_pred cCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh------hHhhh--cCCcEEEE
Q 027894 20 GDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL 91 (217)
Q Consensus 20 G~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~ 91 (217)
|.+|+|||||+|++.+..+.....++.+.+.....+.+++ .++.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876555556666666655666655 45799999998765432 33333 47899999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|+|.++.+. ...+...+.. .+.|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++++|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987532 1222223322 579999999999986544443 346778888899999999999999999999998
Q ss_pred HHH
Q 027894 172 TQI 174 (217)
Q Consensus 172 ~~~ 174 (217)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 754
No 185
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.9e-21 Score=132.22 Aligned_cols=159 Identities=22% Similarity=0.365 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.+.|+++|..++|||||+.++...- -+....+|.+.......+ . ...+.+||..|++..+++|..|+..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 4789999999999999998764421 112233555555444444 3 3568999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHH------HcCCcEEEeccC
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAE------RENTFFMETSAL 158 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~ 158 (217)
++++|+++|+++++-|+.....+..+..... .+.|+++.+||.|+.+ .....++..... +...++.++||.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 9999999999999999887766665554433 7899999999999976 334444443333 244779999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~~~ 177 (217)
+|+|+++..+|++..+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999998876
No 186
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=7.4e-20 Score=135.50 Aligned_cols=117 Identities=23% Similarity=0.352 Sum_probs=87.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC-cEEEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY 93 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~ii~v~ 93 (217)
+|+++|++|||||||+++|....+.....++ ............+....+.+||+||+.+++..+..+++.+ +++++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998776554332 2222221221123456789999999999998888889998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHhcc---CCCCCcEEEEEeCCCCCC
Q 027894 94 DVTRH-VTFENVERWLKELRGH---TDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 94 d~~~~-~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~~ 132 (217)
|+++. .++..+..|+..+... ...+.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6777766655443321 125799999999999854
No 187
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.6e-20 Score=132.34 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=103.3
Q ss_pred EEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHhhhcCCcEE
Q 027894 18 LIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-------AITSAYYRGAVGA 89 (217)
Q Consensus 18 vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i 89 (217)
++|++|+|||||++++.+..... ......+............ ...+.+||+||..... .....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999876552 2222222233333332221 3578999999965432 3445578899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH---HHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE---DAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
++|+|..+..+..... +...... .+.|+++|+||+|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999987766554 3333322 57899999999998653322221 112223335678999999999999999
Q ss_pred HHHHHHH
Q 027894 167 FTEVLTQ 173 (217)
Q Consensus 167 ~~~i~~~ 173 (217)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998865
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=7.6e-20 Score=150.29 Aligned_cols=151 Identities=23% Similarity=0.182 Sum_probs=107.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhhhcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ--------ERYRAITSAYYRG 85 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~ 85 (217)
+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876432 2223334444455555555 46899999995 3445556677899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 164 (217)
+|++++|+|..++.+..+. .+...+.. .+.|+++|+||+|+...... ..+ ....++ +++++||.++.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999876544332 22233332 46899999999998643321 222 234566 69999999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYH 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++++++.+.+.+
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999887743
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=8.4e-20 Score=150.26 Aligned_cols=146 Identities=23% Similarity=0.203 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhhhc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSAYYR 84 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 84 (217)
++|+++|.+|||||||+++|.+..... ...+..+.+.....+.+.+ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876422 2223334445555555655 6789999999865 2333456778
Q ss_pred CCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCC
Q 027894 85 GAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESM 161 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 161 (217)
.+|++++|+|+.++.+..+ +..|+.. .+.|+++|+||+|... ......++ ...++. ++++||+++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~----~~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPD----EEADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCcc----chhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 9999999999988654432 2333332 3689999999999643 12223333 345654 8999999999
Q ss_pred CHHHHHHHHHH
Q 027894 162 NVENAFTEVLT 172 (217)
Q Consensus 162 ~v~~~~~~i~~ 172 (217)
|++++|+.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999987
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=5.7e-20 Score=151.22 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=108.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----------hhh-h
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----------YRA-I 78 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~ 78 (217)
...++|+++|.+|+|||||+++|++..... ...+..+.+.....+...+ ..+.+|||||... +.. .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 357999999999999999999999875322 2233333333334444444 5678999999532 111 1
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH----HcCCcEEE
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE----RENTFFME 154 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 154 (217)
...+++.+|++++|+|++++.+.++.. +...+.. .+.|+++|+||+|+.+... ..+....+.. ...+++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEE
Confidence 234678899999999999987766553 2333332 4689999999999863211 1111111111 13578999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHh
Q 027894 155 TSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
+||+++.|++++|+.+.+......
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999988765443
No 191
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=6e-23 Score=143.15 Aligned_cols=195 Identities=34% Similarity=0.567 Sum_probs=158.5
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe-EEEEEEEeCCCchhhhhhhHhhhc
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-IVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
.....+..+++.|+|.-|+|||+++.+++...++..+..+++.++......++.. .+++++||..||+++..+...+++
T Consensus 18 ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk 97 (229)
T KOG4423|consen 18 APKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK 97 (229)
T ss_pred CCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence 3344678899999999999999999999999999999999999888887777654 468899999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccC----CCCCcEEEEEeCCCCCCcc-cCCHHHHHHHHHHcCCc-EEEeccC
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHT----DSNIVIMLVGNKADLRHLC-AVSTEDAKAFAERENTF-FMETSAL 158 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~ 158 (217)
.+++.++|||+++..+|+....|.+.+.... +...|+++..||||....- .........+.+++|+. .+++|++
T Consensus 98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~K 177 (229)
T KOG4423|consen 98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAK 177 (229)
T ss_pred CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccc
Confidence 9999999999999999999999999887643 2567889999999985421 22246677888888876 9999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCc
Q 027894 159 ESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDV 206 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (217)
.+.++.|+-..+++.+...-. .+-++..+.++.+.+...+..
T Consensus 178 enkni~Ea~r~lVe~~lvnd~------q~~~s~~~~~~~~~l~~~~~s 219 (229)
T KOG4423|consen 178 ENKNIPEAQRELVEKILVNDE------QPIKSSAVDGDKINLRLMQPS 219 (229)
T ss_pred cccChhHHHHHHHHHHHhhcc------CCcccccccccccCccccCcc
Confidence 999999999888887764321 122334566777777766644
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=3.1e-19 Score=134.73 Aligned_cols=150 Identities=27% Similarity=0.274 Sum_probs=102.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------RAITSAYYRGAV 87 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d 87 (217)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+.+ ..+++||+||.... .......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999998764333323333444444555555 67899999996422 123345789999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHH--------------------------------------------HH-----------
Q 027894 88 GALLVYDVTRHV-TFENVERWLK--------------------------------------------EL----------- 111 (217)
Q Consensus 88 ~ii~v~d~~~~~-s~~~~~~~~~--------------------------------------------~l----------- 111 (217)
++++|+|++++. ..+.+...+. ..
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 2322222221 11
Q ss_pred -----------hccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 112 -----------RGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 112 -----------~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
... ....|+++|+||+|+. ..++...++. ...++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~-~~y~p~iiV~NK~Dl~-----~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGN-RVYIPCLYVYNKIDLI-----SIEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCC-ceEeeEEEEEECccCC-----CHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 100 1347899999999984 3344444544 34589999999999999999988765
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=2.5e-19 Score=154.75 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=111.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCch----------hhhhh-h
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----------RYRAI-T 79 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~-~ 79 (217)
..++|+++|.+|||||||+++|++..... ...++.+.+.....+.+++. .+.+|||||.. .+... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 45899999999999999999999987532 22344445555555556664 46799999952 22221 2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-HH----cCCcEEE
Q 027894 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-ER----ENTFFME 154 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~ 154 (217)
...++.+|++++|+|++++.+.++...+ ..+.. .+.|+++|+||+|+.+... .+...... .. ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 3446889999999999998887776533 33332 5689999999999864221 12222111 11 2356799
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHh
Q 027894 155 TSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
+||++|.|++++|+.+.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998876543
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.9e-19 Score=124.50 Aligned_cols=155 Identities=25% Similarity=0.428 Sum_probs=119.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------CC----cccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE--------SK----STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
....+|+|.|+.++||||++++++....... .. .|..+++....+ ++ ...+.+++||||++|.-+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~-~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DE-DTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cC-cceEEEecCCCcHHHHHH
Confidence 4568999999999999999999988763111 11 222233333222 22 145899999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--CCcEEEec
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--NTFFMETS 156 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S 156 (217)
|..+++.+.++++++|.+++..+ .....+..+.... .+|++|++||.|+.+ ....+..+++.+.. ..+.++.+
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999999988 5555566665533 299999999999977 44667777776665 78999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 027894 157 ALESMNVENAFTEVLTQ 173 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~ 173 (217)
|.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999888776
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=2.7e-19 Score=154.27 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh----------hHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI----------TSAY 82 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 82 (217)
.++|+++|++|+|||||+|+|++........+ +.+.......+.....++.+|||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998765433333 34444443334444567899999997654321 1223
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
+ ..+|++++|+|.++.+.. ..+...+.+ .+.|+++++||+|+.+.+.. ..+.+++.+..+++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999875432 223344433 46999999999998654443 34567778889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQI 174 (217)
Q Consensus 161 ~~v~~~~~~i~~~~ 174 (217)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887764
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=2.5e-19 Score=154.74 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 82 (217)
...+|+++|.+|+|||||+|+|++...... ..++.+.+.......+.+ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 457899999999999999999998764322 223333333333333444 5689999999652 33445567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESM 161 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 161 (217)
+..+|++++|+|+++.-+..+ ..|...+.. .+.|+++|+||+|+.... .....+.. .+. ..+++||+++.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence 889999999999987432221 234444443 579999999999985421 12222222 232 36789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQIYH 176 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~ 176 (217)
|++++|++|++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988754
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=2.3e-19 Score=122.99 Aligned_cols=135 Identities=24% Similarity=0.247 Sum_probs=100.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----chhhhhhhHhhhcCCcEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii 90 (217)
||+++|+.|+|||||+++|.+... .+..|..+ .+.+ .++|||| ...+.+.......++|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i-------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAI-------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCcccee-------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998665 33333322 1222 4599999 3456666777778999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~ 169 (217)
++.|++++.+.- -..+... -..|+|-|+||+|+.. .....+.++++.+..|+. +|++|+.+++|++++.++
T Consensus 69 ll~dat~~~~~~-----pP~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVF-----PPGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccC-----Cchhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 999999875411 1111111 3589999999999973 234666777888888875 899999999999999988
Q ss_pred HH
Q 027894 170 VL 171 (217)
Q Consensus 170 i~ 171 (217)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=3.6e-19 Score=149.27 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC----------------CeEEEEEEEeCCCchhhhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE----------------DKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~~~ 77 (217)
.-|+++|++++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 459999999999999999999887654332222111111111111 0112388999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC------------CHHH--
Q 027894 78 ITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV------------STED-- 140 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~-- 140 (217)
++..+++.+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...... ....
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99989999999999999997 44443332 2222 46899999999998531100 0000
Q ss_pred ----------HHHHHH------------H--cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 141 ----------AKAFAE------------R--ENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 141 ----------~~~~~~------------~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
..++.. . ..++++++||++|+|+++++.++......
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001111 0 13679999999999999999998765544
No 199
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=1.1e-18 Score=146.90 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh--CcCCCCC------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
.-+|+++|+.++|||||+++|+. +.+.... ..+.++++......+.....++.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999997 3332211 123455555555555556688999999999999999
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc-CCHHHHHHHHH-------HcCC
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA-VSTEDAKAFAE-------RENT 150 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 150 (217)
+..+++.+|++++|+|+.+....+.. .++..+.. .++|.++++||+|+...+. ...+++..+.. ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999886433332 33333332 4688999999999864321 11233333332 2357
Q ss_pred cEEEeccCCCC----------CHHHHHHHHHHHHHHH
Q 027894 151 FFMETSALESM----------NVENAFTEVLTQIYHV 177 (217)
Q Consensus 151 ~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~ 177 (217)
+++.+||++|. ++..+|+.|++.+...
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 89999999998 5888888888877644
No 200
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=1.8e-18 Score=127.03 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC------C--------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL------E--------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
.++|+++|+.++|||||+++|+...... . .....+++.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5899999999999999999998641100 0 0012233444444445455567899999999888777
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHc-----C
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAERE-----N 149 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 149 (217)
....+..+|++++|+|+.....-+. ...+..+.. .+.| +|+++||+|+....+. ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7788899999999999987543222 223333333 3465 7789999998532221 123344554443 3
Q ss_pred CcEEEeccCCCCCHH
Q 027894 150 TFFMETSALESMNVE 164 (217)
Q Consensus 150 ~~~~~~Sa~~~~~v~ 164 (217)
++++++||++|.+..
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=2.7e-19 Score=133.10 Aligned_cols=147 Identities=26% Similarity=0.223 Sum_probs=94.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC-------------------------------CcccceeEEEEEEEECCeEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-------------------------------KSTIGVEFATRSIRVEDKIVK 63 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 63 (217)
||+++|++|+|||||+++|+...-.... ....+.+..... +......
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--FSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE--EecCCce
Confidence 6899999999999999999764321110 012222222223 3333457
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC----CHH
Q 027894 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV----STE 139 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~----~~~ 139 (217)
+.+|||||++.+.......++.+|++++|+|++++..-+. ......+... ...++|+|+||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8999999998887667777899999999999987642222 1222222221 22457789999998642111 123
Q ss_pred HHHHHHHHcC---CcEEEeccCCCCCHHHH
Q 027894 140 DAKAFAEREN---TFFMETSALESMNVENA 166 (217)
Q Consensus 140 ~~~~~~~~~~---~~~~~~Sa~~~~~v~~~ 166 (217)
+...+....+ .+++++||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3445555555 35899999999998754
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=2.2e-19 Score=147.11 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=100.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------------------------CcccceeEEEEEEEECCeE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------------------KSTIGVEFATRSIRVEDKI 61 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|++++|||||+++|+...-.... ....+++.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45699999999999999999999853211100 0012333333333344445
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCccc----C
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCA----V 136 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~ 136 (217)
..+.+|||||++.|.......+..+|++++|+|+++..++.. ....+..+.. . ...|+++++||+|+.+... .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~-~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L-GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c-CCCeEEEEEEccccccccHHHHHH
Confidence 789999999998887666666789999999999987322211 1122222222 1 2246899999999864211 1
Q ss_pred CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 027894 137 STEDAKAFAEREN-----TFFMETSALESMNVENAFT 168 (217)
Q Consensus 137 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 168 (217)
..+++..++...+ ++++++||++|+|+++.++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 2234555555554 5699999999999988553
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=3.9e-19 Score=145.62 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=103.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC--cCCC-----------------------------CCCcccceeEEEEEEEEC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN--EFSL-----------------------------ESKSTIGVEFATRSIRVE 58 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 58 (217)
....++|+++|+.++|||||+.+|+.. .... ......+.+.... .+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~--~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHW--KFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEE--EEc
Confidence 345699999999999999999999862 1110 0112333444333 344
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH--HHHHHHHhccCCCCCcEEEEEeCCCCCCccc-
Q 027894 59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV--ERWLKELRGHTDSNIVIMLVGNKADLRHLCA- 135 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~- 135 (217)
.....+.+|||||++.|.......+..+|++++|+|++++.+.... ..++. +.... ...|+++++||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHH
Confidence 4457899999999998877777778899999999999988533111 11111 11111 2357899999999963211
Q ss_pred ---CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 027894 136 ---VSTEDAKAFAEREN-----TFFMETSALESMNVENAFT 168 (217)
Q Consensus 136 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 168 (217)
....++..+++..+ ++++++||+++.|+.+.+.
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 12345556666655 5799999999999987543
No 204
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=8e-19 Score=125.99 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=99.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhhHhhhc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAITSAYYR 84 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~~ 84 (217)
.|+++|.+|+|||||++.+.+........++.+.+.....+..+. .+.+|||||. +.+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996655554445555544444444443 7899999993 223444444443
Q ss_pred ---CCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHH--HcCCcEEEe
Q 027894 85 ---GAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAE--RENTFFMET 155 (217)
Q Consensus 85 ---~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 155 (217)
..+++++++|.....+.. .+..|+.. .+.|+++++||+|+...... .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999988663322 22333332 24889999999998432111 1122222222 344679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027894 156 SALESMNVENAFTEVLTQ 173 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998875
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=4.9e-19 Score=149.03 Aligned_cols=159 Identities=15% Similarity=0.187 Sum_probs=112.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC--cCCCCC------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN--EFSLES------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
+|+++|+.++|||||+.+|+.. .+.... ....+++.......+.....++.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221110 01123334433333333447899999999999998899
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHH-------HcCCcE
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAE-------RENTFF 152 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~ 152 (217)
.+++.+|++++|+|+.+.. ......++..+.. .++|+++|+||+|+.+.+.. ..++...+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998753 3334455555544 56889999999998643211 1233333332 235789
Q ss_pred EEeccCCCC----------CHHHHHHHHHHHHHHH
Q 027894 153 METSALESM----------NVENAFTEVLTQIYHV 177 (217)
Q Consensus 153 ~~~Sa~~~~----------~v~~~~~~i~~~~~~~ 177 (217)
+++||+++. |+..+|+.|++.+...
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 999999996 7999999998887644
No 206
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=136.44 Aligned_cols=174 Identities=20% Similarity=0.158 Sum_probs=131.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRA 77 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~ 77 (217)
.........|+++|.+|+|||||+|+|++........-..+.+.....+.+.+ ...+.+-||.|. +.|.+
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH
Confidence 34456778999999999999999999998877655556666777777777765 356899999993 34444
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
.... ...+|++++|+|++++...+.++.....+......+.|+|+|.||+|+..... .......... ..+.+||
T Consensus 265 TLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA 338 (411)
T COG2262 265 TLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISA 338 (411)
T ss_pred HHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEe
Confidence 4433 47799999999999998877777777777776657799999999999754222 1112222222 5888999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccCCCC
Q 027894 158 LESMNVENAFTEVLTQIYHVVSRKALDIGG 187 (217)
Q Consensus 158 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~ 187 (217)
++++|++.+.+.|.+.+..........++.
T Consensus 339 ~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 339 KTGEGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred ccCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 999999999999999998777666555443
No 207
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=137.56 Aligned_cols=151 Identities=23% Similarity=0.176 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER---------YRAITSAYY 83 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 83 (217)
..|+++|.||||||||+|+|++....... .+..+.+.......+.+ ..+.++||+|.+. ........+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998876533 35555555555666666 4589999999432 234455667
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCC
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMN 162 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 162 (217)
..||++|||+|....-+-++- .....+.. .++|+++|+||+|-.. ..+...+|.. +|+ .++.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr~---~~kpviLvvNK~D~~~----~e~~~~efys-lG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPADE-EIAKILRR---SKKPVILVVNKIDNLK----AEELAYEFYS-LGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHHh---cCCCEEEEEEcccCch----hhhhHHHHHh-cCCCCceEeehhhccC
Confidence 899999999999875443221 12222221 5699999999999642 2233334443 454 589999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 v~~~~~~i~~~~~ 175 (217)
+.++++.+++.+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999884
No 208
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=3.7e-18 Score=122.21 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=115.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYR 76 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~ 76 (217)
+-+.+....|+++|.+|||||||||+|+++........|+|.+.....+.+++. +.++|.|| .+.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 335567789999999999999999999998755555577777777888877764 78999999 45666
Q ss_pred hhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH----cC
Q 027894 77 AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER----EN 149 (217)
Q Consensus 77 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~ 149 (217)
.....|+.. ..++++++|+..+..-.+. .++..+.. .++|+++++||+|.....+.. ......+.. ..
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~ 169 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence 777777753 5678889998776544333 33333333 579999999999986532222 112222222 22
Q ss_pred Cc--EEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 150 TF--FMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 150 ~~--~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.. ++..|+.++.|++++...|.+.+..
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 7888999999999999999887754
No 209
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.81 E-value=5.5e-19 Score=118.06 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=117.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..+||+++|-.++|||||++.|..... ....+|.| +....+.+++ .+++.+||.+|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 6679999999999999999999987664 33345555 4455554444 488999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhc-cCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc--------CCcEEEeccCCCC
Q 027894 91 LVYDVTRHVTFENVERWLKELRG-HTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE--------NTFFMETSALESM 161 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 161 (217)
||+|.+|..-|+++..-+..+.. .....+|+++..||.|+.- .....+.+.+. .+-+-++|+.+++
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt-----aa~~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT-----AAKVEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh-----hcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999999989988665555543 3337899999999999743 12222233322 2457899999999
Q ss_pred CHHHHHHHHHH
Q 027894 162 NVENAFTEVLT 172 (217)
Q Consensus 162 ~v~~~~~~i~~ 172 (217)
|+..-.+|+..
T Consensus 166 g~~dg~~wv~s 176 (185)
T KOG0074|consen 166 GSTDGSDWVQS 176 (185)
T ss_pred CccCcchhhhc
Confidence 98888877754
No 210
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=2.9e-18 Score=145.00 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=106.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
-|+++|+.++|||||+++|++.. +........+++.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 48899999999999999998643 3323333444444333333322 2357999999999998888888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC--CHHHHHHHHHHcC---CcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV--STEDAKAFAEREN---TFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 165 (217)
|+|+++...-++.+. +..+.. .+.| +++|+||+|+.+.... ..++...+....+ .+++++||++|+|+++
T Consensus 81 VVda~eg~~~qT~eh-l~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQTREH-LAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHHHHHH-HHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999987432222211 222222 2345 5789999998642211 1234455555444 6799999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 166 AFTEVLTQIYH 176 (217)
Q Consensus 166 ~~~~i~~~~~~ 176 (217)
+++.|.+....
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999875443
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=9.3e-19 Score=142.26 Aligned_cols=163 Identities=21% Similarity=0.182 Sum_probs=105.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEE------------------EEEEECC------eEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFAT------------------RSIRVED------KIVK 63 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~------------------~~~~~~~------~~~~ 63 (217)
...++|+++|+.++|||||+++|.+..... ......+..... .....+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997642211 100111111110 0000011 1357
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHH
Q 027894 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDA 141 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~ 141 (217)
+.+||+||++.|...+......+|++++|+|++++.........+..+... ...|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999888888888999999999999753111122222222221 23568999999998642211 12334
Q ss_pred HHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 142 KAFAERE---NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 142 ~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
..+.... +++++++||++++|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444432 578999999999999999999987654
No 212
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=137.24 Aligned_cols=162 Identities=23% Similarity=0.202 Sum_probs=114.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhh-hhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYR-AIT 79 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~-~~~ 79 (217)
..+||+++|.||+|||||+|+|++.+....+ .+..+.+.....+.+++ -++.++||+|- +.|. ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999998765543 23434444444555555 56899999993 2232 122
Q ss_pred HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEE
Q 027894 80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFME 154 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 154 (217)
...+..+|++++|+|++.+-+-++.. ....+.. .+.++++|+||+|+.+......++.+.-... ..++.++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 34567899999999999987655442 2333332 5788999999999876543444444333222 2367999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHhh
Q 027894 155 TSALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
+||+++.++.++|+.+.+.......
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcc
Confidence 9999999999999998876655443
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.6e-18 Score=140.77 Aligned_cols=164 Identities=21% Similarity=0.190 Sum_probs=104.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEE------------------EC--C----eE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIR------------------VE--D----KI 61 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~------------------~~--~----~~ 61 (217)
.....++|+++|+.++|||||+.+|.+..... ......+......... .. + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 34556999999999999999999996531111 1111112211110000 00 0 12
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--ST 138 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~ 138 (217)
..+.+|||||++.|..........+|++++|+|++++. ..+.... +..+... ...|+++|+||+|+.+.... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57899999999988776666677889999999999653 2222222 2222221 22468999999998653221 12
Q ss_pred HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 139 EDAKAFAERE---NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
++...++... +++++++||++++|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 3344444332 578999999999999999999987664
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=7e-18 Score=142.02 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc----ccceeEEEEEEEE--CCeE-----E-----EEEEEeCCCchhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIRV--EDKI-----V-----KAQIWDTAGQERYR 76 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~l~Dt~G~~~~~ 76 (217)
...|+++|++++|||||+++|.+......... +.+.++....... .+.. . .+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 45799999999999999999987654332222 1121111111000 0111 1 26899999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--C--------------
Q 027894 77 AITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--S-------------- 137 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~-------------- 137 (217)
.++...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...... .
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 888888899999999999997 44544432 2222 46899999999998421100 0
Q ss_pred HH-------HHHHHHHH---------------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 138 TE-------DAKAFAER---------------ENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 138 ~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.+ +....... ..++++++||++++|++++++.+...+.+
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 00 01011111 13579999999999999999988765443
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=2.1e-18 Score=128.87 Aligned_cols=113 Identities=27% Similarity=0.332 Sum_probs=80.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC-----------------CcccceeEEEE--EEEE---CCeEEEEEEEeCCCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------KSTIGVEFATR--SIRV---EDKIVKAQIWDTAGQ 72 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~ 72 (217)
+|+++|+.|+|||||+++|+........ ....+.+.... .+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 01111222222 2212 345688999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
..+......++..+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888888888999999999999988766543 333333322 458999999999974
No 216
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3e-18 Score=136.42 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=113.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhH
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AITS 80 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~ 80 (217)
-..-++|+++|.||+|||||+|.|++....... .+.++-+.....+.+++ +.+.++||+|.+.-. ....
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence 345789999999999999999999999876643 35555666666777777 678999999943221 1123
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
..+..+|.+++|+|.+.+.+-++..- +. ....+.|+++|.||.|+......... ....+.+++.+|++++
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTG 361 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCc
Confidence 45688999999999998633222211 11 22367999999999999764331111 2223457899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQIYHV 177 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~ 177 (217)
+|++.+.+.|.+.+...
T Consensus 362 ~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 362 EGLDALREAIKQLFGKG 378 (454)
T ss_pred cCHHHHHHHHHHHHhhc
Confidence 99999999998888766
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=7.4e-18 Score=127.41 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=80.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
+|+++|+.|+|||||+++|+...-.... ....+.+.......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864211100 011122233333333344478999999999988888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+..+++.+|++++|+|+++.... ....++..+.. .+.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88899999999999999987543 33444455443 468999999999985
No 218
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.3e-19 Score=121.42 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=118.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+...+|+++|-.|+||||++-++.-++... ..|+.+... ..+++ +++++++||..|+-+.+..|+-|+.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence 3467899999999999999998887666533 235544433 33333 668999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH-----HHHHHcCCcEEEeccCCCCCH
Q 027894 90 LLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK-----AFAERENTFFMETSALESMNV 163 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v 163 (217)
|||+|.+|.+....... ++..+.+..-+...++++.||.|.... ....++. .-.+..-+.+|++||.+++|+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 99999999887665543 444454444467788899999998642 2222221 222233477999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYH 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
++.++|+.+-+.+
T Consensus 168 d~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 168 DPAMDWLQRPLKS 180 (182)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999887653
No 219
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=5.1e-18 Score=127.74 Aligned_cols=168 Identities=22% Similarity=0.190 Sum_probs=113.5
Q ss_pred cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc------hh----
Q 027894 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ------ER---- 74 (217)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~---- 74 (217)
+.+......++|+++|.||+|||||.|.+++....+.+....++......+ +.....++.|+||||. ..
T Consensus 64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred CCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHH
Confidence 334456778999999999999999999999999999887777666655555 4444578999999992 11
Q ss_pred --hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc-------------cCCH-
Q 027894 75 --YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC-------------AVST- 138 (217)
Q Consensus 75 --~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------------~~~~- 138 (217)
+.......+..+|.+++++|+++....-. ...+..+..+ ..+|-++|+||.|....+ .++.
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 11233445678999999999996432111 1223333332 468889999999985322 1111
Q ss_pred --HHHHHHHHHc---------CC----cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 139 --EDAKAFAERE---------NT----FFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 139 --~~~~~~~~~~---------~~----~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
+-...+.... ++ .+|.+||++|+|++++-++++..+..
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 1111121111 12 28999999999999999988876654
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=8.3e-18 Score=136.22 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=105.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|++..... ......+++.......+......+.+|||||++.|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4457999999999999999999998632100 00012233344444445445567899999999988
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccCC---HHHHHHHHHHcC--
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAVS---TEDAKAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 149 (217)
.......+..+|++++|+|+.+...-+.. ..+..+.. .++| +|+++||+|+.+..+.. .++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777899999999999875332222 22233332 3577 67889999986422211 234555555544
Q ss_pred ---CcEEEeccCCCC--------CHHHHHHHHHHHH
Q 027894 150 ---TFFMETSALESM--------NVENAFTEVLTQI 174 (217)
Q Consensus 150 ---~~~~~~Sa~~~~--------~v~~~~~~i~~~~ 174 (217)
++++++||+++. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 579999999983 4566666655544
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=5e-18 Score=127.26 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCC--------------------------C---CcccceeEEEEEEEECCeEEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLE--------------------------S---KSTIGVEFATRSIRVEDKIVKAQ 65 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~~ 65 (217)
+|+++|+.++|||||+.+|+...-... . ....+++.......+.....++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999864311000 0 00112223333333333447899
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc--ccC
Q 027894 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRGHTDSNIVIMLVGNKADLRHL--CAV 136 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~~ 136 (217)
+|||||+..+...+...+..+|++++|+|+++.. ..+....+ ..... . ...|+++++||+|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-L-GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-c-CCCeEEEEEEccccccccccHH
Confidence 9999999888777777788999999999999852 11122222 22221 1 23688999999998631 111
Q ss_pred ----CHHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 027894 137 ----STEDAKAFAEREN-----TFFMETSALESMNVE 164 (217)
Q Consensus 137 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~ 164 (217)
..+++..+....+ ++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122233344433 669999999999987
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.8e-17 Score=134.38 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=98.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCC------------C--CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFS------------L--ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|++.... . ......+++.....+.+.....++.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 456799999999999999999999743100 0 00011233333444555555577899999999988
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccCC---HHHHHHHHHHcC--
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAVS---TEDAKAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 149 (217)
.......+..+|++++|+|+.+....+.. ..+..+.. .++|.+ +++||+|+.+..+.. .+++..++..++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777889999999999875333322 22223322 356655 689999986422211 234566666654
Q ss_pred ---CcEEEeccCCCC
Q 027894 150 ---TFFMETSALESM 161 (217)
Q Consensus 150 ---~~~~~~Sa~~~~ 161 (217)
++++++||.++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999874
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=3.1e-17 Score=132.99 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC-------CC-------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEF-------SL-------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|++++|||||+++|++... .. ......+++.......+.....++.++||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 35669999999999999999999986210 00 00012233333344444444567899999999988
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccC---CHHHHHHHHHHcC--
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAV---STEDAKAFAEREN-- 149 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 149 (217)
.......+..+|++++|+|+.+....+. ...+..+.. .++|.+ +++||+|+.+..+. ...++..+...++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7777777889999999999987543222 233333332 457755 57999998642211 1234555555543
Q ss_pred ---CcEEEeccCCCC----------CHHHHHHHHHHHH
Q 027894 150 ---TFFMETSALESM----------NVENAFTEVLTQI 174 (217)
Q Consensus 150 ---~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 174 (217)
++++++||.++. ++.++++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 4566666665543
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=4.6e-17 Score=132.52 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=103.0
Q ss_pred CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC------C--------CCcccceeEEEEEEEECCeEEEEEE
Q 027894 1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL------E--------SKSTIGVEFATRSIRVEDKIVKAQI 66 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l 66 (217)
|++..-+ .....++|+++|++++|||||+++|++..-.. . .....+++.......+.....++.+
T Consensus 1 ~~~~~~~-~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~ 79 (409)
T CHL00071 1 MAREKFE-RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAH 79 (409)
T ss_pred Cchhhcc-CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEE
Confidence 4444433 35566999999999999999999998742110 0 0011233344333444444567899
Q ss_pred EeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHH
Q 027894 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAK 142 (217)
Q Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~ 142 (217)
+||||+..|.......+..+|++++|+|+.....-+.. ..+..+.. .++| +|+++||+|+.+..+. ..+++.
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 99999988877777788899999999999875432222 22233332 4577 7789999998642221 123455
Q ss_pred HHHHHcC-----CcEEEeccCCCCCH
Q 027894 143 AFAEREN-----TFFMETSALESMNV 163 (217)
Q Consensus 143 ~~~~~~~-----~~~~~~Sa~~~~~v 163 (217)
.+....+ ++++++||.++.++
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcccc
Confidence 5555543 67999999998743
No 225
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=2.4e-17 Score=123.08 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEEEEC--------CeEEEEEEEeCC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSIRVE--------DKIVKAQIWDTA 70 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~ 70 (217)
+|+++|+.++|||||+.+|+...-.... ....++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999764321100 0111111112222232 336789999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
|+..|......+++.+|++++|+|+.++.+.+....+.. ... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH---cCCCEEEEEECCCcc
Confidence 999999889999999999999999998766554333332 222 457899999999975
No 226
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=124.61 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhh---hcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSAY---YRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~ 85 (217)
...|.+||.||+|||||++.+............+++....-.+.+++. ..+.+-|.||..+ .+.+-..+ +..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 456889999999999999999998766655566666666665555443 4489999999422 12222223 457
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCC
Q 027894 86 AVGALLVYDVTRH---VTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALE 159 (217)
Q Consensus 86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 159 (217)
++.++||+|++.+ ..|+.++.+..++..+.. .+.|.++|+||+|+.+ .....+.++++...-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEeeecc
Confidence 8999999999998 888888777766665543 6789999999999852 1222246666666544 99999999
Q ss_pred CCCHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQ 173 (217)
Q Consensus 160 ~~~v~~~~~~i~~~ 173 (217)
++++.++++.|-+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999877653
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.1e-17 Score=135.18 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhhhhHhhh-cC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRAITSAYY-RG 85 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~~-~~ 85 (217)
.+|+++|+||+|||||+|++++........+..+.+...-.+...+. ++.++|+||-- +-.-..+..+ .+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 56999999999999999999999887777777777777766666664 48999999932 1122223333 46
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
+|+++-|+|+++-+- ++.-.++.++ -+.|++++.|++|....+-+. -+.+++.+..|+|+++++|++|+|+++
T Consensus 82 ~D~ivnVvDAtnLeR--nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 82 PDLIVNVVDATNLER--NLYLTLQLLE----LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCEEEEEcccchHHH--HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 799999999988642 1222222222 578999999999986543333 346677788999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027894 166 AFTEVLTQIYHVV 178 (217)
Q Consensus 166 ~~~~i~~~~~~~~ 178 (217)
+...+.+......
T Consensus 155 l~~~i~~~~~~~~ 167 (653)
T COG0370 155 LKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHhccccc
Confidence 9998886554433
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=5.3e-17 Score=123.73 Aligned_cols=158 Identities=22% Similarity=0.203 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc------hhh---hhhhHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ------ERY---RAITSAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~~ 82 (217)
....|+|.|+||||||||++.+++......+.+.++-..+.-++..++ .+++++||||. +.. .....++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 567899999999999999999999988777777776666666665555 67899999992 111 1112222
Q ss_pred hcCCcEEEEEEeCCC--hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 83 YRGAVGALLVYDVTR--HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
-+-.++++|++|++. .-+++....++..+..... .|+++|+||+|..+.. ..++........+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEE--KLEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchh--HHHHHHHHHHhhccccccceeeee
Confidence 334678999999986 4567777788888877663 8999999999987532 22333333444443 367788888
Q ss_pred CCCHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIY 175 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~ 175 (217)
+.+.+.+-..+.....
T Consensus 321 ~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 321 GCGLDKLREEVRKTAL 336 (346)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 8888877777666533
No 229
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.75 E-value=7.3e-18 Score=136.48 Aligned_cols=168 Identities=26% Similarity=0.262 Sum_probs=124.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....+||+++|..|+||||||-.++..+|.....+-.. .......+....+...++|++..+.-+.....-++.+|+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 344579999999999999999999999998776543321 222223333334567999998766655556777899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHH-HHHHHHHcC-Cc-EEEeccCCCCC
Q 027894 89 ALLVYDVTRHVTFENV-ERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTED-AKAFAEREN-TF-FMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~-~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~ 162 (217)
+.++|+.+++.+++.+ ..|+..+.+..+ .++|+|+|+||.|.......+.+. ...+..++. +. .++|||++..+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999999999999998 458888887764 679999999999997544443332 333333222 22 79999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027894 163 VENAFTEVLTQIYHVV 178 (217)
Q Consensus 163 v~~~~~~i~~~~~~~~ 178 (217)
+.++|......++...
T Consensus 163 ~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHPT 178 (625)
T ss_pred hHhhhhhhhheeeccC
Confidence 9999998887776544
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=1.3e-16 Score=122.52 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--------------------cccceeEEEEEEEECCeEEEEEEEeCCCch
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK--------------------STIGVEFATRSIRVEDKIVKAQIWDTAGQE 73 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
-+|+++|++|+|||||+++|+...-..... ...+.+.......+.....++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997532110000 011233334444445555889999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.|.......++.+|++++|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8887777788999999999999875432 22334333332 4689999999999854
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=8.6e-17 Score=120.54 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCc-----------------------ccceeEEEEEE-------------EEC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----------------------TIGVEFATRSI-------------RVE 58 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~-------------~~~ 58 (217)
||+++|+.++|||||+++|..+.+...... ..+++.....+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655432110 00111000000 011
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 59 DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
.....+.++||||++.|.......+. .+|++++|+|+.....-. ...++..+.. .++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12356899999999988765554453 789999999988764422 2333343333 45889999999998542211
Q ss_pred --CHHHHHHHHHH--------------------------cCCcEEEeccCCCCCHHHHHHHHH
Q 027894 137 --STEDAKAFAER--------------------------ENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 137 --~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
..++...+... ..+|+|.+||.+|+|+++++..|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11222222221 124799999999999999887664
No 232
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=2.1e-17 Score=123.38 Aligned_cols=166 Identities=17% Similarity=0.233 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhHhhhcCCcE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-----ITSAYYRGAVG 88 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~ 88 (217)
||+++|+.+|||||+.+.+..+..+.... -..+.+.....+.. ...+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999998888765433221 11223333334432 2336899999999865433 45778899999
Q ss_pred EEEEEeCCChhhHHHHHH---HHHHHhccCCCCCcEEEEEeCCCCCCcc--cC----CHHHHHHHHHHcC---CcEEEec
Q 027894 89 ALLVYDVTRHVTFENVER---WLKELRGHTDSNIVIMLVGNKADLRHLC--AV----STEDAKAFAEREN---TFFMETS 156 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~---~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~~S 156 (217)
+|||+|+...+-.+++.. .+..+.... ++..+.+++.|+|+..+. .. ..+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999995444444444 444444444 789999999999985311 11 1122333344455 7799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894 157 ALESMNVENAFTEVLTQIYHVVSRKAL 183 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~~~~~~~~~~ 183 (217)
.++ +.+-+.|..|++.++.+.+.-+.
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~le~ 184 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTLEN 184 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHHHH
Confidence 998 57999999999999877654433
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=1e-16 Score=123.79 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=94.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY------ 75 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 75 (217)
..++|+++|.+|+|||||+|+|++..+... ...+.+.......+..++..+++.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999876543 2334445555556666777789999999993211
Q ss_pred ------------hh--------hhHhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 76 ------------RA--------ITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 76 ------------~~--------~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.. .....+. .+|+++|+++.+... +... ..++..+. ..+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 00 0001222 467888888876522 1111 23334443 3689999999999854
Q ss_pred --cccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894 133 --LCAVSTEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
+.........+.+..+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 222334556677778899998777643
No 234
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=2.5e-16 Score=116.19 Aligned_cols=159 Identities=13% Similarity=0.176 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce---eEEEEEEEECCeEEEEEEEeCCCchhhhh-----hhHhhhcC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---EFATRSIRVEDKIVKAQIWDTAGQERYRA-----ITSAYYRG 85 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~ 85 (217)
++|+++|.+|+|||||+|.|.+.........+.+. +.....+... ....+.+|||||...... +....+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999986553322222121 1111111111 123689999999643211 11223567
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCccc-----------CCHHHHHHHH----HHcC
Q 027894 86 AVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLCA-----------VSTEDAKAFA----EREN 149 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~~~----~~~~ 149 (217)
+|+++++.+. + +... ..++..+.. .+.|+++|+||+|+....+ ...++..+.+ ...+
T Consensus 81 ~d~~l~v~~~--~--~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST--R--FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC--C--CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8988887532 2 2222 344455544 2578999999999842111 0011111111 2222
Q ss_pred ---CcEEEeccC--CCCCHHHHHHHHHHHHHHHhhc
Q 027894 150 ---TFFMETSAL--ESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 150 ---~~~~~~Sa~--~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
.++|.+|+. .+.++..+.+.|+..+.+++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 358999998 5799999999999999887654
No 235
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.6e-16 Score=125.68 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+=|.++|+...|||||+..+-............+-......+..+. ....+.|+||||++.|..+...-..-+|.+++|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 4589999999999999999988887666656555555566665542 234689999999999999998888899999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCCCH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESMNV 163 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v 163 (217)
++++|.---+.. ..+......+.|+++++||+|..+ ...+....-..+++ ..++++||++|+|+
T Consensus 86 Va~dDGv~pQTi----EAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 86 VAADDGVMPQTI----EAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEccCCcchhHH----HHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 999985322222 222222337899999999999974 23333333333333 45999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYHV 177 (217)
Q Consensus 164 ~~~~~~i~~~~~~~ 177 (217)
++++..++-...-.
T Consensus 159 ~eLL~~ill~aev~ 172 (509)
T COG0532 159 DELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887766555
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=1.3e-16 Score=131.67 Aligned_cols=154 Identities=24% Similarity=0.207 Sum_probs=98.1
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC---------------------------------CcccceeEEEEEE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES---------------------------------KSTIGVEFATRSI 55 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 55 (217)
+....++|+++|+.++|||||+.+|+...-.... ....+++.....
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~- 101 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY- 101 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE-
Confidence 4566799999999999999999999764321110 011223332222
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 56 RVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 56 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
+.....++.+|||||++.|.......+..+|++++|+|+.....-+..+.+. .+... ...++++++||+|+.+..+
T Consensus 102 -~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l--g~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 102 -FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL--GIKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred -eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh--CCCceEEEEEeeccccchh
Confidence 3333467899999999988766666679999999999998753222222211 11111 1247889999999864222
Q ss_pred CCHH----HHHHHHHHc----CCcEEEeccCCCCCHHHHH
Q 027894 136 VSTE----DAKAFAERE----NTFFMETSALESMNVENAF 167 (217)
Q Consensus 136 ~~~~----~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~ 167 (217)
...+ +...+.+.. ..+++++||++++|+.+.-
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 1112 222333333 3679999999999998653
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=1.4e-16 Score=122.49 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=78.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
+|+++|++|+|||||+++|+...-.. ......+++.....+.+. ..++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 58999999999999999997421100 011222233333334343 4788999999998888
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
..+...++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888889999999999999987543222 233333332 5689999999999864
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=4.6e-16 Score=128.06 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=99.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC------CC--------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEF------SL--------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
.....++|+++|+.++|||||+++|+...- .. ......+++.......+.....++.+||+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345679999999999999999999986211 00 0011223333333333333446789999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHc--
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAERE-- 148 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~-- 148 (217)
|.......+..+|++++|+|+.+...-+..+ ++..+.. .++| +++++||+|+.+..+. ..+++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 9888888888999999999998765433323 3333332 3567 7789999998642211 122445555543
Q ss_pred ---CCcEEEeccCCCCC
Q 027894 149 ---NTFFMETSALESMN 162 (217)
Q Consensus 149 ---~~~~~~~Sa~~~~~ 162 (217)
+++++++|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 46799999988753
No 239
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=6.8e-17 Score=124.80 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=92.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCC------------------cccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK------------------STIGVEFATRSIRVEDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
+|+++|++|+|||||+++|+...-..... ...+.......+.+.+ .++.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 58999999999999999997532111000 1112222223333333 678999999998888
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEE--E
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFM--E 154 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~ 154 (217)
..+..++..+|++++|+|+++.........| ..+.. .+.|.++++||+|+... ...+....+....+.+++ .
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeEEEE
Confidence 8888889999999999999987655433333 23332 46899999999998653 122233344344454433 3
Q ss_pred eccCCCCCHHHHHHH
Q 027894 155 TSALESMNVENAFTE 169 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~ 169 (217)
+...++.++..+.+.
T Consensus 153 ip~~~~~~~~~~vd~ 167 (268)
T cd04170 153 LPIGEGDDFKGVVDL 167 (268)
T ss_pred ecccCCCceeEEEEc
Confidence 345555554444333
No 240
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=2.9e-16 Score=120.29 Aligned_cols=166 Identities=21% Similarity=0.108 Sum_probs=115.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh----hhhhHh---hhcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY----RAITSA---YYRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~~---~~~~ 85 (217)
...|.+||.|++|||||++.++.........+.+++...--.+.+ ...-.+.+-|.||..+- ..+-.. .+..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 456789999999999999999998766655565555555445544 22345899999993211 111122 2456
Q ss_pred CcEEEEEEeCCChh---hHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCC
Q 027894 86 AVGALLVYDVTRHV---TFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALE 159 (217)
Q Consensus 86 ~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 159 (217)
+.++++|+|++..+ ..++......++..+.. .++|.+||+||+|+....+......+.+.+..++. .+++|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 88999999998644 46666666666665543 68999999999997553333334444444444544 22299999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 027894 160 SMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~~~~ 179 (217)
++|++++...+.+.+.+...
T Consensus 318 ~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 318 REGLDELLRALAELLEETKA 337 (369)
T ss_pred ccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999888864
No 241
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=6.2e-16 Score=117.62 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=114.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------RAITSAYY 83 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 83 (217)
....+|+++|+|++|||||++.|++........+.++.+...-.+.+.+ ..+++.|+||.-.- ........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 4567899999999999999999999887776667767777777777777 67899999983211 13345677
Q ss_pred cCCcEEEEEEeCCChhh-HHHHHHHHHH----------------------------------------------------
Q 027894 84 RGAVGALLVYDVTRHVT-FENVERWLKE---------------------------------------------------- 110 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~---------------------------------------------------- 110 (217)
++||++++|+|+....+ .+.+...+..
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999985443 3333322222
Q ss_pred --------------HhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 111 --------------LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 111 --------------l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
+.... ..+|.++|.||+|+.. .++...+.... .++.+||..+.|++++.+.|.+.+--
T Consensus 219 ~Ir~dvTlDd~id~l~~nr-vY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 219 LIREDVTLDDLIDALEGNR-VYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EEecCCcHHHHHHHHhhcc-eeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 10000 2589999999999743 34444444444 78999999999999999998887754
Q ss_pred Hh
Q 027894 177 VV 178 (217)
Q Consensus 177 ~~ 178 (217)
.+
T Consensus 291 iR 292 (365)
T COG1163 291 IR 292 (365)
T ss_pred EE
Confidence 44
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=3.6e-16 Score=127.15 Aligned_cols=147 Identities=24% Similarity=0.214 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCC---------------------------------CCcccceeEEEEEEEECCe
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------------------------SKSTIGVEFATRSIRVEDK 60 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 60 (217)
+||+++|+.++|||||+.+|+...-... .....+.+.....+ ...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~--~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF--STD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--ccC
Confidence 5899999999999999999965321110 00112233333333 333
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC---
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--- 137 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--- 137 (217)
..++.+|||||++.|.......+..+|++++|+|+.....-+..+.+. .+... ...++++++||+|+.+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence 467899999999988777777789999999999998754322222222 22211 234688899999986422111
Q ss_pred -HHHHHHHHHHcC---CcEEEeccCCCCCHHH
Q 027894 138 -TEDAKAFAEREN---TFFMETSALESMNVEN 165 (217)
Q Consensus 138 -~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 165 (217)
.++...+....+ ++++++||++|+|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333334444 4699999999999886
No 243
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=8.3e-16 Score=124.63 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=96.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
...++|+++|+.++|||||+++|++..... ......+++.......+.....++.++||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 467999999999999999999998732100 000122334444444454445678999999998887
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEE-EEEeCCCCCCcccC---CHHHHHHHHHHc----
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIM-LVGNKADLRHLCAV---STEDAKAFAERE---- 148 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~---- 148 (217)
......+..+|++++|+|+.++..-++ ...+..+.. .+.|.+ +++||+|+.+..+. ...++..+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 777777899999999999987543222 233333332 357865 58999998642211 112344444443
Q ss_pred -CCcEEEeccCCCC
Q 027894 149 -NTFFMETSALESM 161 (217)
Q Consensus 149 -~~~~~~~Sa~~~~ 161 (217)
+++++++||+++.
T Consensus 166 ~~~~iv~iSa~~g~ 179 (396)
T PRK00049 166 DDTPIIRGSALKAL 179 (396)
T ss_pred cCCcEEEeeccccc
Confidence 3679999999875
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=1.2e-15 Score=127.03 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=80.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------------C-----CcccceeEEEEEEEECCeEEEEEEEeCC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------S-----KSTIGVEFATRSIRVEDKIVKAQIWDTA 70 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
....+|+++|+.++|||||+++|+...-... . ....++++......+.....++.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974211000 0 0011233333333333345789999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
|+..|......+++.+|++++|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 9998887777788999999999999875432 22334333332 579999999999974
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=5.3e-16 Score=134.09 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=83.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------C-----C-----CcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------E-----S-----KSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|+.|+|||||+++|+...-.. . . ....++......+.+ ...++.+|||||
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG 82 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPG 82 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCC
Confidence 3456899999999999999999998632100 0 0 011122222223333 347899999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+..+...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 998888889999999999999999987766655444 33332 468999999999985
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=4e-16 Score=125.69 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=123.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---------------CCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---------------ESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQER 74 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~ 74 (217)
+..-++.++-+...|||||..+|+...-.. +.....++.-....+.+ +++.+.+.++||||+-.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 456789999999999999999997743211 11223333333333333 46678899999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHcCCcEE
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERENTFFM 153 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (217)
|..-....+.-|+++++|+|++....-+....++..+. .+..+|.|+||+|++..+.. ...+........+.+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 98878888889999999999999877777777777776 57789999999999763322 22334444444556799
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 154 ETSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
.+||++|.|+.++|+.|++.+......
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999988765543
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=1.8e-15 Score=102.23 Aligned_cols=106 Identities=25% Similarity=0.273 Sum_probs=70.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhhhc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER---------YRAITSAYYR 84 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~ 84 (217)
||+++|.+|+|||||+|+|++..... ...+..+.......+.+.+. .+.++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 69999999999999999999864322 22233333333445556664 457999999421 1111233348
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeC
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK 127 (217)
.+|++++|+|.+++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877422 33344445552 67999999998
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=7.1e-16 Score=126.38 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=101.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------------------C---CCcccceeEEEEEEEECCeE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------------------E---SKSTIGVEFATRSIRVEDKI 61 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|+.++|||||+.+|+...-.. . .....+++.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456899999999999999999886521100 0 00111333333444445555
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHhccCCCCC-cEEEEEeCCCCCCc
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE-------NVERWLKELRGHTDSNI-VIMLVGNKADLRHL 133 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~iiv~nK~D~~~~ 133 (217)
..+.++|+||++.|.......+..+|++++|+|+.+. .|+ .....+..+.. .++ ++|+++||+|+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence 7899999999999999999999999999999999873 221 22222222222 356 46888999997521
Q ss_pred c------cCCHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 027894 134 C------AVSTEDAKAFAEREN-----TFFMETSALESMNVEN 165 (217)
Q Consensus 134 ~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 165 (217)
. ....+++..++...+ ++++++||++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 112355666666665 6799999999999854
No 249
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=9.8e-16 Score=119.99 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=55.2
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV---------------------ED-KIVKAQIWDTAGQ- 72 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~Dt~G~- 72 (217)
|+++|.+++|||||+++|++........+..+.+...-...+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998754322233322322222111 22 3467999999996
Q ss_pred ---hhhhhhhHh---hhcCCcEEEEEEeCC
Q 027894 73 ---ERYRAITSA---YYRGAVGALLVYDVT 96 (217)
Q Consensus 73 ---~~~~~~~~~---~~~~~d~ii~v~d~~ 96 (217)
++...+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 344444333 489999999999997
No 250
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.6e-16 Score=109.24 Aligned_cols=155 Identities=16% Similarity=0.274 Sum_probs=116.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.-|++++|-.|+|||||++.|......... || .......+.+.+ .+++.+|.+|+..-+..|..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 358999999999999999999887654332 32 223344444555 7889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------cC-----------CcEEE
Q 027894 93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAER------EN-----------TFFME 154 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~-----------~~~~~ 154 (217)
+|+.|.+-|.+....+..+..... ...|+++.+||+|.+. ..++++.+..... .+ +.++.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 999999999888776666655443 6899999999999875 3344443322211 11 24788
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 027894 155 TSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~ 174 (217)
+|...+.+..+.|.|+-+.+
T Consensus 173 csi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEccCccceeeeehhhhc
Confidence 99998888888888876543
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=7.4e-16 Score=131.90 Aligned_cols=154 Identities=22% Similarity=0.169 Sum_probs=96.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------------Ccc-------------------cceeEEEEEEEE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES------------KST-------------------IGVEFATRSIRV 57 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~------------~~~-------------------~~~~~~~~~~~~ 57 (217)
.....++|+++|++++|||||+++|+...-.... ..+ .+++.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4455689999999999999999999874321110 000 011122222223
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894 58 EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 137 (217)
.....++.++||||++.|.......+..+|++++|+|+..+..-+..+.+ ..+... ...++++++||+|+.+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~--~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL--GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh--CCCeEEEEEEecccccchhHH
Confidence 33345788999999988876666678899999999999765432222221 122211 235788899999986411111
Q ss_pred H----HHHHHHHHHcC---CcEEEeccCCCCCHHH
Q 027894 138 T----EDAKAFAEREN---TFFMETSALESMNVEN 165 (217)
Q Consensus 138 ~----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 165 (217)
. .+...+....+ ++++++||+++.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 22333444444 4599999999999875
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.68 E-value=2.7e-15 Score=122.89 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=100.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC------cCCCC--------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN------EFSLE--------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
....++|+++|+.++|||||+++|.+. ..... .....+++.......+.....++.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 446799999999999999999999732 10000 0011233333444445445567899999999888
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccCC---HHHHHHHHHHc---
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAVS---TEDAKAFAERE--- 148 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~--- 148 (217)
.......+..+|++++|+|+.+...-++ ...+..+.. .++| +|+++||+|+.+..+.. ..+...+....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7767667778999999999987543222 222233332 4577 57789999986422211 11233333332
Q ss_pred --CCcEEEeccC---CCCC-------HHHHHHHHHHHH
Q 027894 149 --NTFFMETSAL---ESMN-------VENAFTEVLTQI 174 (217)
Q Consensus 149 --~~~~~~~Sa~---~~~~-------v~~~~~~i~~~~ 174 (217)
.++++++|+. ++.| +.++++.+.+.+
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3678888876 4444 556666665544
No 253
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=4.3e-16 Score=116.20 Aligned_cols=163 Identities=20% Similarity=0.223 Sum_probs=110.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhhhhHhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRAITSAY 82 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~ 82 (217)
....++|+++|.+|+|||||||+|..+...+...-..+.+.........+. -.+.+||+||-+ +++.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 445689999999999999999999977665544333344433333322222 458999999943 377778889
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc-------cCCHHHHHHHHHH--------
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC-------AVSTEDAKAFAER-------- 147 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~~~~~~-------- 147 (217)
+...|.++++++..|+.---+ +.+++.+.... -+.++++++|.+|....- ......++++.++
T Consensus 115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998863222 34444444433 448899999999984320 0111112222211
Q ss_pred c--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 148 E--NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 148 ~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
. =-|++..+.+.+.|++++...+++.+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 145788888999999999999988876
No 254
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=3.3e-15 Score=122.54 Aligned_cols=152 Identities=15% Similarity=0.105 Sum_probs=98.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcC--CC---------------------------CCCcccceeEEEEEEEECCeE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------------------ESKSTIGVEFATRSIRVEDKI 61 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|+.++|||||+.+|+...- .. ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999876210 00 000111333333344445555
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHhccCCCCCc-EEEEEeCCCCCC--
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F---ENVERWLKELRGHTDSNIV-IMLVGNKADLRH-- 132 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~-- 132 (217)
..+.++||||+..|.......+..+|++++|+|+....- + ......+..+.. .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccch
Confidence 789999999999998888888999999999999987530 1 112222222222 3555 678999999532
Q ss_pred cc----cCCHHHHHHHHHHc-----CCcEEEeccCCCCCHHH
Q 027894 133 LC----AVSTEDAKAFAERE-----NTFFMETSALESMNVEN 165 (217)
Q Consensus 133 ~~----~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 165 (217)
.. ....+++..+.... +++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 11123344444433 36799999999999864
No 255
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.5e-15 Score=120.37 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=117.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
...-|.++|+...|||||+..|-+...........+-......+... ..-.++|.||||+..|..+...-..-.|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 34668899999999999999998887766554444444444445454 33678999999999999999888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCCC
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESMN 162 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~ 162 (217)
|+.+.|.-- .+....+......+.|+|+++||+|.++ .+.+...+-...+| +.++++||++|+|
T Consensus 231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 999998532 2222333333447899999999999764 34444444433333 4589999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027894 163 VENAFTEVLTQIYHVV 178 (217)
Q Consensus 163 v~~~~~~i~~~~~~~~ 178 (217)
++.+-+.++-...-+-
T Consensus 304 l~~L~eaill~Ae~md 319 (683)
T KOG1145|consen 304 LDLLEEAILLLAEVMD 319 (683)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999988876655443
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.67 E-value=1.6e-15 Score=124.14 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=104.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccc--eeEEEE-------------EEEECC------------
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIG--VEFATR-------------SIRVED------------ 59 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~--~~~~~~-------------~~~~~~------------ 59 (217)
.+..++|+++|+...|||||+.+|++..... +.....+ ..+... ......
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4567999999999999999999999743211 1111111 111100 000000
Q ss_pred ----eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 60 ----KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 60 ----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
....+.++|+||++.|.......+..+|++++|+|+.++. ..+..+.+ ..+... .-.++|+|+||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence 0136899999999999888888888999999999998742 22222222 222221 224688999999986422
Q ss_pred cC--CHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 135 AV--STEDAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 135 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.. ..++..++... .+.+++++||++++|++++++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 11 12333333332 3578999999999999999988886554
No 257
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=5.5e-15 Score=123.18 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=80.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CcccceeEEEEEEEECCeEEEEEEEeCC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------------------KSTIGVEFATRSIRVEDKIVKAQIWDTA 70 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 70 (217)
....+|+++|++++|||||+++|+...-.... ....++++......++....++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999998642110000 0111334444444445555889999999
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
|+..|.......++.+|++++|+|+++... .....++..... .+.|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 998887767778899999999999987522 122344443332 568999999999973
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=6.5e-15 Score=108.67 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--cccceeEEEEEEEECCeEEEEEEEeCCCchhh-------h----hhhH
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------R----AITS 80 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~----~~~~ 80 (217)
++|+++|.+|+|||||+|.+++........ ...+.........+.+ ..+.++||||.... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999986533221 2222333333333444 57899999994221 1 1112
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccC------CHHHHHHHHHHcCCcE
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAV------STEDAKAFAERENTFF 152 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 152 (217)
.....+|++++|+++.+ .+-++ ...+..+....+ .-.++++++|+.|......+ .....+.+.+..+-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999877 33222 233344433322 12578889999997542211 1134555555556556
Q ss_pred EEeccC-----CCCCHHHHHHHHHHHHHH
Q 027894 153 METSAL-----ESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 153 ~~~Sa~-----~~~~v~~~~~~i~~~~~~ 176 (217)
+..+.+ .+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 555544 456666666666665554
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=8.8e-16 Score=122.47 Aligned_cols=167 Identities=23% Similarity=0.193 Sum_probs=108.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-h------h--hhhH
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-Y------R--AITS 80 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~------~--~~~~ 80 (217)
-+..++|+++|.||+|||||+|.|.+......+ +-.|++.......++-..+++.+.||+|..+ - . ....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 345699999999999999999999999876654 3334444444444444448899999999543 1 0 1123
Q ss_pred hhhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHhccCC------CCCcEEEEEeCCCCCCc-ccCCHHHHHHHHHHc---
Q 027894 81 AYYRGAVGALLVYDVT--RHVTFENVERWLKELRGHTD------SNIVIMLVGNKADLRHL-CAVSTEDAKAFAERE--- 148 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~--~~~s~~~~~~~~~~l~~~~~------~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~~~--- 148 (217)
..+..+|++++|+|+. +-.+...+...+........ ...+++++.||.|+... .+..... ..+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCc
Confidence 3467899999999994 33333333444444433221 34789999999999653 1122111 1111111
Q ss_pred CCc-EEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 149 NTF-FMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 149 ~~~-~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
..+ +.++|+++++|++++.+.+.+.+....
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 133 566999999999999998888777655
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=1.3e-14 Score=125.21 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC------------------CCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|+.++|||||+++|+...-.. ......+.+.....+.+.+ .++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 3456789999999999999999997531100 0112333444444444444 6789999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+..+...+...++.+|++++|+|+.+....++. ..+..+.. .++|+++++||+|+.
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 988887888889999999999999886543333 23333332 568999999999985
No 261
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.63 E-value=5e-15 Score=97.25 Aligned_cols=136 Identities=21% Similarity=0.234 Sum_probs=99.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----chhhhhhhHhhhcCCcEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii 90 (217)
||+++|..|+|||||.+.+.+.... +..|.. +.+.+. -.+|||| +..+.+........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999886642 222222 223221 3689999 4566666777788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~ 169 (217)
+|-.+.++.|. +-..+... ...|+|-|++|.|+.+ ....+..+++..+.|.. +|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~-----f~p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCcccc-----CCcccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999998651 11122222 2355899999999975 34556777888888864 999999999999999987
Q ss_pred HHH
Q 027894 170 VLT 172 (217)
Q Consensus 170 i~~ 172 (217)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 262
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=8.5e-15 Score=116.47 Aligned_cols=161 Identities=20% Similarity=0.218 Sum_probs=118.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcC---------------CCCCCcccceeEEEEEEEE---CCeEEEEEEEeCCCch
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEF---------------SLESKSTIGVEFATRSIRV---EDKIVKAQIWDTAGQE 73 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~ 73 (217)
..-+..++.+-..|||||..|++...- ........++.-....+.+ ++..+.+.++||||+-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 344678899999999999999976421 1112233334334444433 4577999999999998
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH-HHHHHHcCCc-
Q 027894 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA-KAFAERENTF- 151 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~~- 151 (217)
.|.--....+..|.++++|+|++..-.-+.+.+.+..+. .+.-++.|+||+|++... .+.. .+.-.-.|+.
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid~ 160 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAAD---PERVKQEIEDIIGIDA 160 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCC---HHHHHHHHHHHhCCCc
Confidence 776666667788999999999999887778888888887 567799999999997632 2222 2333334544
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894 152 --FMETSALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 152 --~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
.+-+||++|.|++++++.|++.+.+...
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 7889999999999999999999876653
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.62 E-value=1.2e-15 Score=109.20 Aligned_cols=115 Identities=27% Similarity=0.367 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHh---hhcCCcEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSA---YYRGAVGA 89 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~i 89 (217)
-.|+++|+.|+|||+|+..|..+.......+. .... ...+ ......+.++|+||+++.+..... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999998654433222 1111 1111 223346899999999887754433 47889999
Q ss_pred EEEEeCCC-hhhHHHHHHHH-HHHhcc--CCCCCcEEEEEeCCCCCC
Q 027894 90 LLVYDVTR-HVTFENVERWL-KELRGH--TDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~-~~l~~~--~~~~~p~iiv~nK~D~~~ 132 (217)
|||+|.+. ...+.++..++ .-+... ....+|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 44455554433 333221 236799999999999854
No 264
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=2.7e-15 Score=119.85 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=123.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc-----hhhh----hhhH
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-----ERYR----AITS 80 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~~~----~~~~ 80 (217)
-+..-.++++|.|++|||||++.++.......+.++++.....-++ +.+..+.+++||||. +... ....
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 3456788999999999999999999988776665555544444444 333467899999992 1110 1112
Q ss_pred hhhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH---HHHHHHHHcCCcEEEe
Q 027894 81 AYYRGAVGALLVYDVTR--HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE---DAKAFAERENTFFMET 155 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~ 155 (217)
.+.+--.+|+|+.|++. +.|.++...++..+.... .+.|.|+|+||+|+.....+.++ .+..+....+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 22333456999999986 456666666777776655 78999999999999654444443 3344444556899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhccccC
Q 027894 156 SALESMNVENAFTEVLTQIYHVVSRKALD 184 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~ 184 (217)
|+.+.+|+-++-...++.+++++......
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klk 350 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAARVEQKLK 350 (620)
T ss_pred cccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998766443
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=8.5e-14 Score=115.57 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=73.5
Q ss_pred EEEEEeCCCchh-----hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894 63 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 63 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 137 (217)
++.++||||... +.......+..+|+++||+|.....+..+. .....+.... ...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 578999999532 233344578999999999999875444332 2334444322 236999999999986433333
Q ss_pred HHHHHHHHH----HcC---CcEEEeccCCCCCHHHHHHHHHH
Q 027894 138 TEDAKAFAE----REN---TFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 138 ~~~~~~~~~----~~~---~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
.+....+.. ... ..+|++||+.+.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 455555432 222 24999999999999999998887
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=2.5e-14 Score=123.61 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-----CC-------------CcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-----ES-------------KSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|++++|||||+++|+...-.. .. ....+.+.....+.+.+ .++.+|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 4456699999999999999999997532111 00 12223333344444444 7899999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
+..+...+...++.+|++++|+|+.+....+....| ..+.. .+.|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 988877788889999999999999986655443333 33332 4689999999999864
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=9.7e-14 Score=111.96 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRV---------------------E-DKIVKAQIWDTAG 71 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G 71 (217)
++|+++|.+|+|||||+++|++........+..+.+...-...+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999998765433233333333322211 1 2236789999999
Q ss_pred c----hhhhhhhHhh---hcCCcEEEEEEeCC
Q 027894 72 Q----ERYRAITSAY---YRGAVGALLVYDVT 96 (217)
Q Consensus 72 ~----~~~~~~~~~~---~~~~d~ii~v~d~~ 96 (217)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2233333344 78999999999996
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.59 E-value=1.1e-13 Score=119.48 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=80.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCC--C---C-------------CCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFS--L---E-------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~--~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|++++|||||+++|+...-. . . .....+.+.....+.+.+ .++.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 445679999999999999999999742110 0 0 112233333344444443 6799999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+..+.......+..+|++++|+|+...-..++...| ..+.. .+.|+++++||+|+.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 987776677778899999999999876544443333 33332 468899999999985
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=1.2e-13 Score=119.41 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=75.6
Q ss_pred EcCCCCChHHHHHHHhhCcCCCC------------------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894 19 IGDSGVGKSNLLSRFTRNEFSLE------------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 19 vG~~~~GKtsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
+|+.++|||||+++|+...-... .....++......+.+.+ ..+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999965321100 012223333333444444 7899999999988877788
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
..+..+|++++|+|+++.........| ..+.. .+.|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999987665544333 33332 468999999999985
No 270
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=8.6e-14 Score=109.39 Aligned_cols=157 Identities=20% Similarity=0.148 Sum_probs=102.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC--CC---------------C------------CCcccceeEEEEEEEECCe
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------E------------SKSTIGVEFATRSIRVEDK 60 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~--~~---------------~------------~~~~~~~~~~~~~~~~~~~ 60 (217)
....++++++|+..+|||||+-+|+...- +. . ....-|.+.......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 34679999999999999999999865311 00 0 0011244444444445445
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---HH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---FE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
.+.++++|+||+..|-......+.+||+.++|+|+.+.+. |. ..-+.+..+.+.. .-..+|+++||+|..+-.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCH
Confidence 5789999999999999889889999999999999988641 11 1112222222222 2345788899999975222
Q ss_pred CCHH----HHHHHHHHcC-----CcEEEeccCCCCCHHHHH
Q 027894 136 VSTE----DAKAFAEREN-----TFFMETSALESMNVENAF 167 (217)
Q Consensus 136 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 167 (217)
...+ +...+.+..+ ++|+++|+..|+|+.+.-
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 2222 2233333333 569999999999987644
No 271
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.54 E-value=2.9e-13 Score=103.17 Aligned_cols=181 Identities=22% Similarity=0.359 Sum_probs=126.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCC---
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGA--- 86 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--- 86 (217)
..-+|+|+|..++||||||.+|.+.+ ...+..+..+-...+.-+ +...++.+|-..|...+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 45689999999999999999998876 333445555555544332 3346788999999776666665554432
Q ss_pred -cEEEEEEeCCChhh-HHHHHHHHHHHhcc--------------------------------------------------
Q 027894 87 -VGALLVYDVTRHVT-FENVERWLKELRGH-------------------------------------------------- 114 (217)
Q Consensus 87 -d~ii~v~d~~~~~s-~~~~~~~~~~l~~~-------------------------------------------------- 114 (217)
-.+|++.|++++.+ ++.+..|...+..+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 35788999999854 45566665443321
Q ss_pred -----------CCCCCcEEEEEeCCCCC----CcccC-------CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 115 -----------TDSNIVIMLVGNKADLR----HLCAV-------STEDAKAFAERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 115 -----------~~~~~p~iiv~nK~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
.+-++|+++|++|+|.. .+.+. ....++.||..+|..++++|++...|++-+..+|++
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 00258999999999983 22222 235567889999999999999999999999999999
Q ss_pred HHHHHhh-ccccCCCCCCCCCCCC
Q 027894 173 QIYHVVS-RKALDIGGDPAALPKG 195 (217)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~~~ 195 (217)
.++-.-- -....++.+..++|-|
T Consensus 288 r~yG~~fttpAlVVEkdaVfIPAG 311 (473)
T KOG3905|consen 288 RSYGFPFTTPALVVEKDAVFIPAG 311 (473)
T ss_pred HhcCcccCCcceEeecceeEeccC
Confidence 8875432 2244456666666655
No 272
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.53 E-value=6.1e-13 Score=104.87 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=85.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHhccCC-CCCcEEEEEeCCC
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D 129 (217)
.+.+.+||++|+...+..|..++.++++++||+|+++. ..+.+....+..+..... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36789999999999999999999999999999999974 334444344444443332 6899999999999
Q ss_pred CCCcc----------------cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 130 LRHLC----------------AVSTEDAKAFAER----------ENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 130 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
+..++ ....+.+..+... ..+..+.++|.+-.+++.+|+.+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 73110 2234444444332 2345678899999999999999998887654
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=1.1e-13 Score=119.85 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=81.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC---------------cCCCC---CCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN---------------EFSLE---SKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+...+|+++|+.++|||||+++|+.. .+.+. ...|.........+...+...++.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 345689999999999999999999753 11110 111222222222333566678899999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+..|.......++.+|++++|+|+.+....+....|. .+.. .+.|+++++||+|..
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH---cCCCEEEEEEChhcc
Confidence 9888877888899999999999998754333322232 2222 457888999999985
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.9e-13 Score=103.53 Aligned_cols=151 Identities=25% Similarity=0.241 Sum_probs=105.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------C---------------------CcccceeEEEEEEEEC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------S---------------------KSTIGVEFATRSIRVE 58 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------~---------------------~~~~~~~~~~~~~~~~ 58 (217)
....+|.+.+|...-||||||-||+....... + ....|++..+.+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 44678999999999999999999977432110 0 1122555555555555
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHH--HHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV--ERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
....+|++-||||+++|..+...-...||++|+++|+...- ++.. ..++..+. .-..+++++||+|+.+-.+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL----GIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL----GIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh----CCcEEEEEEeeecccccCHH
Confidence 55578999999999999988888888999999999984432 2222 12333333 33568889999999764433
Q ss_pred CH----HHHHHHHHHcCCc---EEEeccCCCCCHHH
Q 027894 137 ST----EDAKAFAERENTF---FMETSALESMNVEN 165 (217)
Q Consensus 137 ~~----~~~~~~~~~~~~~---~~~~Sa~~~~~v~~ 165 (217)
.. .+...|+.+.++. ++++||+.|+|+-.
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 32 4455677777754 99999999988754
No 275
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=5.6e-13 Score=101.29 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhh-------hh-
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-------AI- 78 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~- 78 (217)
+..+..++|+|+|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||..... ..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 345678999999999999999999999986543321 1222333333333344 678999999953221 00
Q ss_pred --hHhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCC--CCcEEEEEeCCCCCC
Q 027894 79 --TSAYYR--GAVGALLVYDVTRHV-TFENVERWLKELRGHTDS--NIVIMLVGNKADLRH 132 (217)
Q Consensus 79 --~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~iiv~nK~D~~~ 132 (217)
...++. ..|++++|..++... ...+ ..++..+....+. -.++++|.||+|...
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 112332 578888887665432 2221 2333444333221 256899999999853
No 276
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.3e-13 Score=95.59 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc---CCcEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR---GAVGAL 90 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~ii 90 (217)
-.|+++|..+||||+|+-+|..+.+.....+ +......+.+... .+.++|.||+.+.+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 5789999999999999999988855443311 2222333333332 2799999999988876666666 788999
Q ss_pred EEEeCCC-hhhHHHHHH-HHHHHhcc--CCCCCcEEEEEeCCCCC
Q 027894 91 LVYDVTR-HVTFENVER-WLKELRGH--TDSNIVIMLVGNKADLR 131 (217)
Q Consensus 91 ~v~d~~~-~~s~~~~~~-~~~~l~~~--~~~~~p~iiv~nK~D~~ 131 (217)
||+|... .....++.. ++.-+... ....+|++++.||.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999764 223444433 44444433 24778999999999984
No 277
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.50 E-value=7.4e-13 Score=107.86 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=126.0
Q ss_pred cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
+.+......+++.++|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 44556778999999999999999999999999888766667667777777777777777888887754 222222111 6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNV 163 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 163 (217)
.||+++++||.+++.+|+.+...++..... ...|+++|++|+|+.+..+...-...+++.+++++ .+.+|.+....
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 799999999999999999887766554433 68999999999999764433333337888888876 55567764333
Q ss_pred HHHHHHHHHHHHHHh
Q 027894 164 ENAFTEVLTQIYHVV 178 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~ 178 (217)
.++|..|...+....
T Consensus 572 ~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 NELFIKLATMAQYPH 586 (625)
T ss_pred chHHHHHHHhhhCCC
Confidence 889988887765443
No 278
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.49 E-value=1.1e-12 Score=107.42 Aligned_cols=185 Identities=21% Similarity=0.379 Sum_probs=125.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCC--
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGA-- 86 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-- 86 (217)
...-.|+|+|..++||||||.+|.+.. .+.++.+++|....+.-+ +...++.+|-..|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 445689999999999999999997654 233555666655554332 2235789999988666666655544422
Q ss_pred --cEEEEEEeCCChhhHH-HHHHHHHHHhcc-------------------------------C-----------------
Q 027894 87 --VGALLVYDVTRHVTFE-NVERWLKELRGH-------------------------------T----------------- 115 (217)
Q Consensus 87 --d~ii~v~d~~~~~s~~-~~~~~~~~l~~~-------------------------------~----------------- 115 (217)
-.+++|+|.+.|..+- .+..|+..+..+ .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 3688999999986543 444444332210 0
Q ss_pred --------------CCCCcEEEEEeCCCCCC----cc-------cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 116 --------------DSNIVIMLVGNKADLRH----LC-------AVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 116 --------------~~~~p~iiv~nK~D~~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+-++|++||++|+|... +. .....-++.+|..+|+.++++|++...+++.++..|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 01489999999999732 11 122344678888999999999999999999999999
Q ss_pred HHHHHHHhhc-cccCCCCCCCCCCCC-cee
Q 027894 171 LTQIYHVVSR-KALDIGGDPAALPKG-QTI 198 (217)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 198 (217)
.+.++...-. .......+.-++|.| |+.
T Consensus 260 ~h~l~~~~f~~~~~vv~~d~ifIP~GwDs~ 289 (472)
T PF05783_consen 260 LHRLYGFPFKTPAQVVERDAIFIPAGWDSW 289 (472)
T ss_pred HHHhccCCCCCCceeecccccccCCCCCCH
Confidence 9888765533 234456667777777 443
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=1e-12 Score=101.44 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=70.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-------ITSAY 82 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~ 82 (217)
...++|+++|.+|+||||++|+|++........ ...+...........+ .++.+|||||...... ....+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 567999999999999999999999887533221 1112222222222343 6799999999543211 11111
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCC
Q 027894 83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRH 132 (217)
Q Consensus 83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~ 132 (217)
+ ...|+++||.+++.....+.-...+..+....+ --.+.|+++|+.|...
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1 268999999665432211111223333333222 2256899999999754
No 280
>PTZ00258 GTP-binding protein; Provisional
Probab=99.49 E-value=1.2e-12 Score=104.71 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=60.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE---------------EEEEEEeCCCchh-
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------VKAQIWDTAGQER- 74 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~- 74 (217)
...++|+++|.||+|||||+|+|++........+..+.+.....+.+.+.. .++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456899999999999999999998877655444555555555555554322 3589999999421
Q ss_pred ------hhhhhHhhhcCCcEEEEEEeCC
Q 027894 75 ------YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 ------~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233467899999999973
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.47 E-value=3.6e-12 Score=101.28 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=84.6
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCC
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRGHTD-SNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~ 130 (217)
..+.+||.+|+...+..|..++.++++++||+|+++. ..+.+....+..+..... .+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5689999999999999999999999999999999973 234444444444444322 67999999999998
Q ss_pred CCcc---------------cCCHHHHHHHHHH-----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 131 RHLC---------------AVSTEDAKAFAER-----------ENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 131 ~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
..+. ....+.+..+... ..+.++.++|.+-.++..+|+.+...+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 3110 1233444444322 1244678889999999999999888877654
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=5.4e-12 Score=111.57 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=96.7
Q ss_pred hHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE----------------EEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 26 KSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI----------------VKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 26 Ktsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
||||+.++-+...........+-......++.+... -.+.+|||||++.|..+....+..+|++
T Consensus 474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv 553 (1049)
T PRK14845 474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA 553 (1049)
T ss_pred cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence 999999999988766555555544444445443110 1279999999999988877788889999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC----------------HHHHH----HH--
Q 027894 90 LLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS----------------TEDAK----AF-- 144 (217)
Q Consensus 90 i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~----------------~~~~~----~~-- 144 (217)
++|+|+++ +.+++.+. .+.. .++|+++|+||+|+....... ..+.. .+
T Consensus 554 lLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 554 VLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999987 34433332 2222 358999999999985321100 00010 00
Q ss_pred -HHH---------------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 145 -AER---------------ENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 145 -~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
... ..++++++||++|+|+++++.+|......
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 011 13579999999999999999887655443
No 283
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.8e-13 Score=103.12 Aligned_cols=166 Identities=20% Similarity=0.166 Sum_probs=113.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEE------------------EEEEEEC------CeEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFA------------------TRSIRVE------DKIVK 63 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~~------~~~~~ 63 (217)
+..++|.++|+...|||||.++|.+--... ......++... ...-... .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999997732111 11111111000 0000000 11246
Q ss_pred EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHH
Q 027894 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDA 141 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~ 141 (217)
+.|+|.||++-......+-..-.|++++|++++.+........-+..+.... -..+|++=||+|+.... ..+++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 7899999999888777777777899999999998665444444444443332 35588899999996422 2345677
Q ss_pred HHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 142 KAFAER---ENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 142 ~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
++|.+. .+.|++++||..+.|++.+++.|.+++....
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 777765 4678999999999999999998888776443
No 284
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-12 Score=99.09 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=105.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc----CCC---CCCcccceeEEEEEEEE-------CCeEEEEEEEeCCCchhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE----FSL---ESKSTIGVEFATRSIRV-------EDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~----~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~ 75 (217)
.+..+++.++|+..||||||.++|..-. |.. +.....+.+..-..+.+ .+..+++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3456999999999999999999997632 111 22223333333333322 244578899999999887
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHhccCCCCCcEEEEEeCCCCCCcccCC---HHHHHHHHHH----
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWL-KELRGHTDSNIVIMLVGNKADLRHLCAVS---TEDAKAFAER---- 147 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~---- 147 (217)
-........-.|..++|+|+.....-+.++.++ ..+. -...++|+||+|...+.... ....+...+.
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 777777777789999999998765444444432 2222 23367788999985432211 1122222221
Q ss_pred ---cCCcEEEeccCCC----CCHHHHHHHHHHHHHHHh
Q 027894 148 ---ENTFFMETSALES----MNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 148 ---~~~~~~~~Sa~~~----~~v~~~~~~i~~~~~~~~ 178 (217)
-+.|++++|+..| +++.++.+.+..++++..
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 1278999999999 677777766666666544
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=1.3e-12 Score=97.50 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC--cccceeEEEEEEEECCeEEEEEEEeCCCch-------hhhh-h---hH
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRVEDKIVKAQIWDTAGQE-------RYRA-I---TS 80 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~-~---~~ 80 (217)
++|+++|.+|+||||++|.+++........ ...+.........+.+ ..+.++||||.. .... + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987644332 2223334444445666 568999999921 1111 1 12
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCC-------HHHHHHHHHHcCCc
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVS-------TEDAKAFAERENTF 151 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 151 (217)
......+++++|+.+.. -+-.+. ..+..+....+ --..++||.|..|......+. ...++.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 23456899999999883 232222 22222222222 124588888888865433211 12345566667777
Q ss_pred EEEeccC------CCCCHHHHHHHHHHHHHHH
Q 027894 152 FMETSAL------ESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 152 ~~~~Sa~------~~~~v~~~~~~i~~~~~~~ 177 (217)
|+..+.+ ....+.++++.|-+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8877777 2345666666665555544
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.45 E-value=2.3e-12 Score=102.59 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=112.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
.-+|+++.+...|||||+..|+.+.-.- .....-|++.-.+...+.....++.++||||+..|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999998863211 11122245544444444455588999999999999888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-HHHHHHHH-------HHcCC
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-TEDAKAFA-------ERENT 150 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~ 150 (217)
....+.=+|++++++|+.+..--+ ....+..... .+.+.|+|+||+|.+..+... .++...+. .+.++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 888899999999999998854211 1222222222 566778899999997644221 12333333 24678
Q ss_pred cEEEeccCCC----------CCHHHHHHHHHHHHHHHhh
Q 027894 151 FFMETSALES----------MNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 151 ~~~~~Sa~~~----------~~v~~~~~~i~~~~~~~~~ 179 (217)
|+++.|++.| .++.-+|+.|++++.+...
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 9999999876 4688899988888876553
No 287
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=1.2e-12 Score=100.13 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=69.7
Q ss_pred EEEEEeCCCchhh---hhhhHhhhc---C--CcEEEEEEeCCChhhHHHHH--HHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 63 KAQIWDTAGQERY---RAITSAYYR---G--AVGALLVYDVTRHVTFENVE--RWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 63 ~~~l~Dt~G~~~~---~~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.+.+||+||+.+. ...+..+++ . .+++++++|........+.. .|+....... .+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence 6899999997553 233322322 2 88999999997654433322 2222111111 4789999999999864
Q ss_pred cccCCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 133 LCAVSTEDAKA----------------------------FAEREN--TFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 133 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
..+. ++... .....+ .+++++|+++++|+++++++|.+.+.
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 3221 11111 122233 57899999999999999999988764
No 288
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=4.9e-12 Score=93.19 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=64.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 141 (217)
....++++.|..-...... . -+|.++.|+|+.+..+... .+...+. .--++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 4567788888321111111 1 1577999999987765321 1112221 11288999999974322333444
Q ss_pred HHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 142 KAFAER--ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 142 ~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
.+..+. .+.+++++||++|+|++++|++|.+++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444443 457899999999999999999998754
No 289
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.5e-13 Score=111.11 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC------------C----eEEEEEEEeCCCchhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE------------D----KIVKAQIWDTAGQERYR 76 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~l~Dt~G~~~~~ 76 (217)
..=|+|+|+..+|||-|+..+-+.++......+.+-.+....++.. . ..--+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998877655544444444433333332 0 11136789999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc------cC-------C------
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC------AV-------S------ 137 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------~~-------~------ 137 (217)
.+.......||.+|+|+|+...---+.++. ++.+ +.++.|+||++||+|..... .+ .
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiES-i~lL---R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLL---RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHH-HHHH---HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 999999999999999999986422222222 1222 23789999999999973110 00 0
Q ss_pred -----HHHHHHHHHH-cC-------------CcEEEeccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894 138 -----TEDAKAFAER-EN-------------TFFMETSALESMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 138 -----~~~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
..-+.+|+.+ ++ +.++++||.+|+|+.+++-+|+++....+..+
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0111222221 11 34799999999999999999999998887755
No 290
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.43 E-value=1.1e-12 Score=89.42 Aligned_cols=114 Identities=32% Similarity=0.348 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754443 3322 222334456778999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
++..+..+++.+ |...+......+.|.++++||.|+.++.....++.. .++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999998765 666665555567889999999998543333333332 34667889988874
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=6.6e-12 Score=109.25 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=78.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEE--EECCeEEEEEEEeCCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSI--RVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~ 72 (217)
+..-+|+++|+.++|||||+.+|+...-.... ....++......+ .+.+....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 44568999999999999999999763211100 0011121122222 23445678999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
..|.......++.+|++++|+|+......+....|..... .+.|.|+++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 8888888888999999999999987644333333333222 346779999999975
No 292
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.42 E-value=8.3e-13 Score=100.41 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=78.3
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc
Q 027894 73 ERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF 151 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
+++..+.+.+++++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+......+....+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567777788999999999999999888 89999999987754 5799999999999965444333444444 457889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 027894 152 FMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 152 ~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988753
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=2.4e-12 Score=113.26 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=82.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcccceeEEEEEEEEC--------------C
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRVE--------------D 59 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~ 59 (217)
.+...+|+++|+.++|||||+.+|+...-... .....++......+.+. .
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45567999999999999999999976431100 00111222222222221 2
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
....+.++||||+..|.......++.+|++++|+|+..+-.......|..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 35778999999999998888888999999999999988755444444433332 578999999999985
No 294
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.40 E-value=1.1e-11 Score=95.81 Aligned_cols=141 Identities=17% Similarity=0.244 Sum_probs=76.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------CcccceeEEEEEEEECCeEEEEEEEeCCCch--------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------- 73 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------- 73 (217)
..++|+|+|.+|+|||||||.|++....... ..+..+......+.-++..+.+.++||||..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999987543331 1233344444455557788899999999911
Q ss_pred ----------hhhhhh---------HhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 74 ----------RYRAIT---------SAYYRGAVGALLVYDVTRHVT-FENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 74 ----------~~~~~~---------~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
.|.... ...-..+|+++|+++++...- -.++ ..+..+. ..+++|.|+.|+|.-..
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence 111100 001134689999999875431 1122 3445554 56889999999996321
Q ss_pred ccC--CHHHHHHHHHHcCCcEEEecc
Q 027894 134 CAV--STEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~~~Sa 157 (217)
.+. ....+.......++.+|....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHcCceeecccc
Confidence 111 122233444557777665443
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=4.2e-11 Score=90.12 Aligned_cols=140 Identities=18% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
......|+++|.+|+|||||++.+.+..-........+. ..+ ......++.++||||.- . ......+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEE
Confidence 345578999999999999999999875221111111111 111 11234678999999864 2 223346889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcE-EEEEeCCCCCCcccCC---HHHHHH-HHHH--cCCcEEEeccCCCC
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVI-MLVGNKADLRHLCAVS---TEDAKA-FAER--ENTFFMETSALESM 161 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~ 161 (217)
++++|++....... ..++..+.. .+.|. ++|+||+|+.+..... ..+++. +... .+.+++.+||+++-
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999986544322 233334432 34664 4599999986322111 112222 2221 34679999999874
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.39 E-value=2.7e-11 Score=95.95 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE---------------EEEEEEeCCCchh----
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------VKAQIWDTAGQER---- 74 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---- 74 (217)
++|+++|.||+|||||+|+|++........+..+.+...-.+.+.+.. .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999987544333444445544444444321 2589999999321
Q ss_pred ---hhhhhHhhhcCCcEEEEEEeCC
Q 027894 75 ---YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 ---~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112223467899999999984
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.39 E-value=1.4e-11 Score=97.77 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=89.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcc---cceeEEE-----EEEE-ECCeEEEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKST---IGVEFAT-----RSIR-VEDKIVKAQ 65 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~---~~~~~~~-----~~~~-~~~~~~~~~ 65 (217)
...+.|+|+|+.++|||||||+|.+..+.|. +.+. .+++... ..+. .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 3568999999999999999999999822221 1111 1122211 1222 245557899
Q ss_pred EEeCCCch--------hhhh---------------------hhHhhhc-CCcEEEEEE-eCC----ChhhHH-HHHHHHH
Q 027894 66 IWDTAGQE--------RYRA---------------------ITSAYYR-GAVGALLVY-DVT----RHVTFE-NVERWLK 109 (217)
Q Consensus 66 l~Dt~G~~--------~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~-~~~~~~~ 109 (217)
++||+|-. +... -+...+. ++|..++|. |.+ .++.+. .-+.++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999910 0011 0223344 789888888 664 112233 3355677
Q ss_pred HHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894 110 ELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 110 ~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.+.. .++|+++++|+.|... ....+...++..+++++++.+|+..
T Consensus 175 eLk~---~~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHH
Confidence 7765 6799999999999432 1244445566677888888888764
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=3.5e-12 Score=112.09 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=80.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcccceeEEEEEEEEC--------CeEEEEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRVE--------DKIVKAQ 65 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~ 65 (217)
.+...+|+++|+.++|||||+++|+...-... .....++......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34456999999999999999999987321100 00111112112222232 1256789
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
++||||+..|.......++.+|++++|+|+.+.-..+...-| ..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999998888888889999999999999886544433333 33332 468999999999985
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.39 E-value=7.3e-12 Score=98.48 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=68.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~ 139 (217)
+.+.++||+|...-... ....+|.++++.+...++.++.+.. .+.. ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 67899999996522221 4567999999977555554443322 1211 223899999998642211 112
Q ss_pred HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894 140 DAKAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 140 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
+....... +..+++.+||+++.|++++++.|.+++....+
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 22222221 22579999999999999999999998764443
No 300
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.8e-12 Score=94.29 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC----------CC----CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEF----------SL----ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
..-+.++|..+|+...|||||..++..-.. .. ......+++....++.+......+-.+|+||+..
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 344569999999999999999888754211 00 0113346677777777776667889999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccC---CHHHHHHHHHHcCC
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAV---STEDAKAFAERENT 150 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~ 150 (217)
|-.+...-..+.|+.|+|++++|..--+.. ..+.-.+.-+.| +++++||+|+.++.+. -..+.+++...+++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTr----EHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTR----EHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcch----hhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 998888888999999999999985532222 222222224565 5567899999764332 34667788888875
Q ss_pred c-----EEEeccCC-CCCHHHHHHHHHHHHHHHhhcc
Q 027894 151 F-----FMETSALE-SMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 151 ~-----~~~~Sa~~-~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
+ ++.-||+. .+|-.. +..-+..+.+.....
T Consensus 164 ~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~y 199 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSY 199 (394)
T ss_pred CCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhc
Confidence 4 77777665 333222 333334444444333
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.37 E-value=6.7e-12 Score=93.34 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=83.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------Cccc---ceeEEEEEEEE------------------
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------KSTI---GVEFATRSIRV------------------ 57 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------~~~~---~~~~~~~~~~~------------------ 57 (217)
......|+++|+.|+|||||+++++........ ..+. ........+..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 345788999999999999999998764211000 0000 00000000000
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894 58 EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 137 (217)
......+.+++|.|.-... ..+....+..+.|+|+.+.+.. .... ... ...|.++++||+|+.......
T Consensus 99 ~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY-PGM-----FKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred ccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh-HhH-----HhhCCEEEEEHHHccccchhh
Confidence 0012355667776621000 0111123444567776654321 1111 111 235679999999996532222
Q ss_pred HHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 138 TEDAKAFAERE--NTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 138 ~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
..+..+..... ..+++++||+++.|++++|+++.++
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33444444443 3889999999999999999999875
No 302
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.36 E-value=9.3e-12 Score=89.50 Aligned_cols=63 Identities=25% Similarity=0.254 Sum_probs=45.7
Q ss_pred EEEEEeCCCch----hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCC
Q 027894 63 KAQIWDTAGQE----RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKA 128 (217)
Q Consensus 63 ~~~l~Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~ 128 (217)
.+.|+||||.. .....+..+++.+|++++|.++....+-.+...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 47899999953 23466778889999999999999876655666665555543 34488889984
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.36 E-value=9e-12 Score=93.11 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=69.7
Q ss_pred EEEEEEeCCCchh-h------hhhhHhhh-cCCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 62 VKAQIWDTAGQER-Y------RAITSAYY-RGAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 62 ~~~~l~Dt~G~~~-~------~~~~~~~~-~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
++..++|||||.+ | .-+...+. ...-++++++|.....+-. .+..++-........+.|+|++.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4688999999742 1 11122222 2345678888876533222 233333333333336799999999999964
Q ss_pred cc----cCCH-HHHHHHHHH---------------------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894 133 LC----AVST-EDAKAFAER---------------------ENTFFMETSALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 133 ~~----~~~~-~~~~~~~~~---------------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
.. ++.. +..++.... .++..+-+|+.+|.|++++|..+-+.+.+...
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 21 1111 111111110 23557999999999999999999887766544
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.36 E-value=1.4e-12 Score=98.52 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=58.2
Q ss_pred EEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 63 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHVT-FENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++..+.....-+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999987755554443 34557888999764332 122233332222222257999999999999652
Q ss_pred c--c-----CC------------HHHHHHHHH---HcC-C-cEEEeccCCCCCHHHHHHHHHHHH
Q 027894 134 C--A-----VS------------TEDAKAFAE---REN-T-FFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 134 ~--~-----~~------------~~~~~~~~~---~~~-~-~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
. . .. .....+++. ..+ . .++++|+.+++++.+++..|-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 0 00 000111111 122 3 699999999999999998876654
No 305
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=7.8e-11 Score=92.29 Aligned_cols=131 Identities=16% Similarity=0.230 Sum_probs=90.2
Q ss_pred eeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhH-------HHHH---HHHHHHhccCC-
Q 027894 48 VEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTF-------ENVE---RWLKELRGHTD- 116 (217)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~---~~~~~l~~~~~- 116 (217)
.......+.+.+ ..+.++|++||...+.-|.+++.+++++|||+++++-+.. ..+. .++..+-....
T Consensus 183 ~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 183 TGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 334444444444 7789999999999999999999999999999999864321 1222 23333333333
Q ss_pred CCCcEEEEEeCCCCCCcc---------------cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHH
Q 027894 117 SNIVIMLVGNKADLRHLC---------------AVSTEDAKAFAER----------ENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 117 ~~~p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
.+.++|+++||.|+-.+. ....+++..+... ..+.+..+.|.+-.+++.+|..+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 679999999999983211 1233444444322 234567788999999999999999
Q ss_pred HHHHHHhhc
Q 027894 172 TQIYHVVSR 180 (217)
Q Consensus 172 ~~~~~~~~~ 180 (217)
+.++...-+
T Consensus 341 d~Ii~~nlk 349 (354)
T KOG0082|consen 341 DTIIQNNLK 349 (354)
T ss_pred HHHHHHHHH
Confidence 988876543
No 306
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=5e-11 Score=88.12 Aligned_cols=159 Identities=25% Similarity=0.213 Sum_probs=110.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-------RAITSAYY 83 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 83 (217)
....||+++|.|++|||||+..+....-........+.+...-.+.+++ ..+++.|.||.-.- .....+..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence 3468999999999999999999988665444445555666666677777 45799999993211 22334566
Q ss_pred cCCcEEEEEEeCCChhhHH-HHHHHHHHHhcc------------------------------------------------
Q 027894 84 RGAVGALLVYDVTRHVTFE-NVERWLKELRGH------------------------------------------------ 114 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~------------------------------------------------ 114 (217)
+.+|.+++|.|++..+.-. -++..+..+...
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev 217 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV 217 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence 8899999999998644322 122222221110
Q ss_pred -----------------CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 115 -----------------TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 115 -----------------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
....++++.|-||+| +++.++..+++.+.+-. .+|+.-+.|++.+++.|.+.+.-.
T Consensus 218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pnsv--ViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSV--VISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred EEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcE--EEEeccccCHHHHHHHHHHHhceE
Confidence 002367888899998 57888888888876654 458888999999999998877544
Q ss_pred h
Q 027894 178 V 178 (217)
Q Consensus 178 ~ 178 (217)
+
T Consensus 291 r 291 (364)
T KOG1486|consen 291 R 291 (364)
T ss_pred E
Confidence 3
No 307
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.31 E-value=1.8e-11 Score=97.07 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=79.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcc--cceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh-----Hhhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKST--IGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT-----SAYY 83 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~~ 83 (217)
..++|+|+|.+|+|||||||+|-+-.... ...++ ..++.....+... ..-.+.+||.||........ ..-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46899999999999999999997632211 11111 1111112222111 11248999999943222112 2235
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC--C-----cccCCH----HHHHHHHH----Hc
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR--H-----LCAVST----EDAKAFAE----RE 148 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~--~-----~~~~~~----~~~~~~~~----~~ 148 (217)
...|.+|++.+- +-+-.++ .+...+.. .++|+.+|-+|+|.. + .+.... +++++.+. +.
T Consensus 113 ~~yD~fiii~s~--rf~~ndv-~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSE--RFTENDV-QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESS--S--HHHH-HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCC--CCchhhH-HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 668877776653 2221222 22233433 568999999999961 1 112222 22233322 23
Q ss_pred CC---cEEEeccCC--CCCHHHHHHHHHHHHHHHhhc
Q 027894 149 NT---FFMETSALE--SMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 149 ~~---~~~~~Sa~~--~~~v~~~~~~i~~~~~~~~~~ 180 (217)
++ ++|-+|+.+ ..++..+.+.+...+..++..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 33 488899887 456888888888877776654
No 308
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.30 E-value=2.9e-11 Score=86.40 Aligned_cols=54 Identities=19% Similarity=0.070 Sum_probs=43.8
Q ss_pred EEEEEeCCCCCCcccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 121 IMLVGNKADLRHLCAVSTEDAKAFAERE--NTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 121 ~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
-++|+||.|+.+.-..+.+...+-+++. +.+++++|+++|+|+++++.|+....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4789999999876666667777666664 58899999999999999999887653
No 309
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.8e-11 Score=97.51 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=100.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----------------------------CCcccceeEEEEEEEECC
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------------------------SKSTIGVEFATRSIRVED 59 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (217)
.....+..+++|+..+|||||+.+++...-... .....|++..+....++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 344689999999999999999999865311110 011123444444444455
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFE---NVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
....++++|+||+..|-.....-...+|+.++|+|++... .|+ .... +..+.+.. .-..++|++||+|..+=
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L-gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL-GISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc-CcceEEEEeecccccCc
Confidence 5578999999999889888888889999999999987532 111 1111 22222222 23558889999998641
Q ss_pred c----cCCHHHHHHHH-HHcC-----CcEEEeccCCCCCHHHH
Q 027894 134 C----AVSTEDAKAFA-EREN-----TFFMETSALESMNVENA 166 (217)
Q Consensus 134 ~----~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~v~~~ 166 (217)
. +.....+..|. +..| +.|+++|+..|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 1 12223344555 3334 46999999999986544
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.28 E-value=4.7e-11 Score=93.61 Aligned_cols=104 Identities=17% Similarity=0.053 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH--
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST-- 138 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~-- 138 (217)
.+++.|+||+|..... ......+|.++++... .+.+++..+...+ .++|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 3678999999954221 2345668888877543 3334444444434 3467799999999864321110
Q ss_pred H----HHHHHHH---HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 139 E----DAKAFAE---RENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 139 ~----~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
. ....+.. .+..+++++||+++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0011111 12346999999999999999999998754
No 311
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.28 E-value=9.4e-11 Score=91.26 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=85.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------CCcccceeEEEEEEEECCeEEEEEEEeCCCchh------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER------ 74 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 74 (217)
-..+.|+++|++|+|||||+|.|++...... ..++..+..+...+.-++..+.+.++||||...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3568999999999999999999998743322 123444445555555577778899999999211
Q ss_pred -h-------hhhhHhhh--------------cCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 75 -Y-------RAITSAYY--------------RGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 75 -~-------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
| ......|+ ..+|+++|++.++... +..+ -..+..+. ..+.+|.|+.|+|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 0 11111111 2368888888866433 2222 22344444 557799999999974
Q ss_pred Cccc--CCHHHHHHHHHHcCCcEEE
Q 027894 132 HLCA--VSTEDAKAFAERENTFFME 154 (217)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~~~ 154 (217)
...+ ...+.+.+....+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 3221 1223344555667888774
No 312
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=7.1e-12 Score=91.33 Aligned_cols=146 Identities=21% Similarity=0.297 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-----hhhHhhhcCCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-----AITSAYYRGAV 87 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~d 87 (217)
-||+++|.+|+||||+=..+..+... .....+.++++...++.+-|. +.+.+||++|++.+- ......+++.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 48999999999999975544432211 122244445666655555443 568999999998542 23456789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHH---HHhccCCCCCcEEEEEeCCCCCCcc--cCC----HHHHHHHHHHcCCcEEEeccC
Q 027894 88 GALLVYDVTRHVTFENVERWLK---ELRGHTDSNIVIMLVGNKADLRHLC--AVS----TEDAKAFAERENTFFMETSAL 158 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~---~l~~~~~~~~p~iiv~nK~D~~~~~--~~~----~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
++++|||++..+-..++..+-. .+.+.. ++..+++...|+|+.... +.. .+....+....++.++++|.+
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999988765555544433 343333 677788899999996422 111 122233333455678888888
Q ss_pred CCC
Q 027894 159 ESM 161 (217)
Q Consensus 159 ~~~ 161 (217)
+..
T Consensus 163 Det 165 (295)
T KOG3886|consen 163 DET 165 (295)
T ss_pred hHH
Confidence 654
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.26 E-value=1.6e-11 Score=93.76 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=111.2
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhh
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAI 78 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~ 78 (217)
.......-|.+||.+|+||||||++|+.....+...-..+.+........... -.+.+.||-|. ..|...
T Consensus 173 r~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 173 REGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH
Confidence 34556678999999999999999999987776655555555555555544333 24688899993 233333
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc----EEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEE
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV----IMLVGNKADLRHLCAVSTEDAKAFAERENTFFME 154 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
.. -...+|.++.|.|++.|..-+..+..+..+....-+..| ++=|-||+|........ + .++ -+.
T Consensus 252 Le-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-E-------~n~--~v~ 320 (410)
T KOG0410|consen 252 LE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-E-------KNL--DVG 320 (410)
T ss_pred HH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-c-------cCC--ccc
Confidence 33 346799999999999998666566666555554433333 34478888875422111 1 122 577
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894 155 TSALESMNVENAFTEVLTQIYHVVSRKAL 183 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~ 183 (217)
+||++|+|.+++...+-..+.......+.
T Consensus 321 isaltgdgl~el~~a~~~kv~~~t~~~e~ 349 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASETTVDED 349 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhhheeeeE
Confidence 89999999999999888887766654433
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.24 E-value=2.9e-10 Score=95.24 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=74.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchhh----------hh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQERY----------RA 77 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~ 77 (217)
+-+..++|+++|.+|+||||++|.|++........ ...+..........++ ..+.++||||.... ..
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 34567899999999999999999999986433322 1222222222233344 56899999994321 11
Q ss_pred hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCC--CcEEEEEeCCCCCC
Q 027894 78 ITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSN--IVIMLVGNKADLRH 132 (217)
Q Consensus 78 ~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~iiv~nK~D~~~ 132 (217)
....++. .+|++|+|..++.......-..++..+....+.+ ..+|||+|+.|...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1222333 5899999998764333212224455555444322 45788999999864
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.2e-10 Score=96.93 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------CcccceeEEEEEEEECCe-EEEEEEEeCCCc
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KSTIGVEFATRSIRVEDK-IVKAQIWDTAGQ 72 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~ 72 (217)
....-+|.++|+..+|||||..+++-..-.... ...-+++........... ..+++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 556789999999999999999998653211110 011134444444444444 488999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
-.|..-....++-+|++++|+|+...-..+.-..|.+... .++|.++++||+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence 9999888889999999999999988765554555655544 679999999999985
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.22 E-value=3e-10 Score=85.62 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=69.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce-----------eEEEE---------------------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV-----------EFATR--------------------------- 53 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~-----------~~~~~--------------------------- 53 (217)
....|+++|++|+||||+++.+.+..+.+......+. ..+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999987532211100000 00000
Q ss_pred -----------EEEEC-CeEEEEEEEeCCCch-------------hhhhhhHhhhc-CCcEEEEEEeCCChhhHHHHHHH
Q 027894 54 -----------SIRVE-DKIVKAQIWDTAGQE-------------RYRAITSAYYR-GAVGALLVYDVTRHVTFENVERW 107 (217)
Q Consensus 54 -----------~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~ 107 (217)
.+.+. .....+.++||||-. ....+...|++ ..+.+++|+|+...-.-.+...+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 01110 111478899999942 12334556677 45688999988653222222233
Q ss_pred HHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 108 LKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 108 ~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
...+.. .+.++++|+||.|..+
T Consensus 185 a~~ld~---~~~rti~ViTK~D~~~ 206 (240)
T smart00053 185 AKEVDP---QGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHH---cCCcEEEEEECCCCCC
Confidence 333332 5688999999999864
No 317
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.6e-10 Score=88.68 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=87.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------CCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------h
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------Y 75 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~ 75 (217)
..+.++++|.+|.|||||||.|+...+... ...+..+......+.-++..++++++||||... |
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 468999999999999999999988754432 122334444444444467778999999999110 0
Q ss_pred -------hhhhHhh-----------hc--CCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 76 -------RAITSAY-----------YR--GAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 76 -------~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
.+....| +. .+|+++|++.++... +..+ ..++..+. ..+.+|.|+.|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 1111111 22 578888888876542 2222 22334443 567799999999974322
Q ss_pred cC--CHHHHHHHHHHcCCcEEEeccCCC
Q 027894 135 AV--STEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
+. ....+.+.+...++++|....-..
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 22 123344455667788776665443
No 318
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=1.4e-10 Score=85.16 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=88.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---------CCcccceeEEEEEEEECCeEEEEEEEeCCCc---------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ--------- 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------- 72 (217)
-+.++|+|||.+|.|||||+|.+........ ...|..+......+.-++..++++++||||.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 3578999999999999999999877544321 1122233333334444666778899999991
Q ss_pred ---------hhhh--------hhhHhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCC-
Q 027894 73 ---------ERYR--------AITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR- 131 (217)
Q Consensus 73 ---------~~~~--------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~- 131 (217)
+.|. ......+. .+++++|.+-.+- .++.-+ ..++..+. .-+.++.|+.|.|-.
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt----~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT----EVVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh----hhheeeeeEeeccccc
Confidence 1111 11111122 2466677666553 233322 12333333 335588899999963
Q ss_pred -CcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 132 -HLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+++..-.+.+++-...+++.+|+-.+.+...-+..++.-
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~k 238 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDK 238 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHH
Confidence 222222334444455688888877776655444444433
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.1e-10 Score=90.30 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCC---CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
-|+..|+--.|||||++.+.+..-. .......+++........++. .+.++|.||++++-+.....+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4788999999999999999886432 233344455555555555443 78999999999998888888889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH---HcCCcEEEeccCCCCCHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE---RENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
|++.++.-..+..+.+ ..+... .....++|+||+|..++.. ..+..++... ..+.+++.+|+.+++|++++.+
T Consensus 80 vV~~deGl~~qtgEhL-~iLdll--gi~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEHL-LILDLL--GIKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHHH-HHHHhc--CCCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9999765444433332 111111 2344689999999875321 1122222222 3457789999999999999999
Q ss_pred HHHHHHH
Q 027894 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999884
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.18 E-value=5.9e-10 Score=84.72 Aligned_cols=161 Identities=19% Similarity=0.108 Sum_probs=97.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc-----------CCCCCCcccc---------------eeEEEEEEEEC-------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE-----------FSLESKSTIG---------------VEFATRSIRVE------- 58 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~-----------~~~~~~~~~~---------------~~~~~~~~~~~------- 58 (217)
....|.+.|.||+|||||+..|...- ..|++..|-| ...+...+...
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 35689999999999999999886531 1222211111 11111111111
Q ss_pred -----------CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeC
Q 027894 59 -----------DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127 (217)
Q Consensus 59 -----------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK 127 (217)
...+++++++|.|--+-... ...-+|.+++|.=..-.+.++.++.-+..+. -++|+||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEec
Confidence 12257899999884332222 3445898999888777777666655333332 3889999
Q ss_pred CCCCCcccCCHHHHH--HHH----H--HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 027894 128 ADLRHLCAVSTEDAK--AFA----E--RENTFFMETSALESMNVENAFTEVLTQIYHVVSRKAL 183 (217)
Q Consensus 128 ~D~~~~~~~~~~~~~--~~~----~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~ 183 (217)
.|.........+... .+. . .+..+++.+||..++|++++++.|.++.......+..
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 996432111111111 111 1 1335699999999999999999999988777665543
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.17 E-value=6.2e-11 Score=88.74 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=90.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcC-----------CCCCCcc---------------cceeEEEEEEEECC------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEF-----------SLESKST---------------IGVEFATRSIRVED------ 59 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~------ 59 (217)
..+.|.+.|+||+|||||+..|...-. .|++..+ .....+...+..-+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 457999999999999999998855211 1111110 01122233222211
Q ss_pred ------------eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeC
Q 027894 60 ------------KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNK 127 (217)
Q Consensus 60 ------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK 127 (217)
..+.+++++|.|--+-.. ....-+|.+++|.-+.-.+..+.++.-+.++. -++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence 125788999987322211 23456999999999988777665554333332 3889999
Q ss_pred CCCCCcccCCHHHHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 128 ADLRHLCAVSTEDAKAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 128 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
.|...... ...+....... +..|++.+||.++.|++++++.|.++.......
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99643221 11222222221 235799999999999999999998876655543
No 322
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=9.8e-10 Score=85.59 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeE-----------------------
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKI----------------------- 61 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------- 61 (217)
.+.+++....|+++|+-+.||||||+.|+.+.++.... +..++++....+.-+...
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 46678889999999999999999999999999876432 223333333333221100
Q ss_pred ----------------EEEEEEeCCCc---------h--hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhcc
Q 027894 62 ----------------VKAQIWDTAGQ---------E--RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGH 114 (217)
Q Consensus 62 ----------------~~~~l~Dt~G~---------~--~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~ 114 (217)
-.+.++||||. . .|......+...+|.+|++||+..-+--++.+..+..+..
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG- 209 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG- 209 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-
Confidence 16889999992 1 2445567788999999999998876655556666666654
Q ss_pred CCCCCcEEEEEeCCCCCC
Q 027894 115 TDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 115 ~~~~~p~iiv~nK~D~~~ 132 (217)
.+-.+-||+||.|..+
T Consensus 210 --~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 210 --HEDKIRVVLNKADQVD 225 (532)
T ss_pred --CcceeEEEeccccccC
Confidence 4455778899999754
No 323
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=3.5e-10 Score=91.90 Aligned_cols=167 Identities=19% Similarity=0.325 Sum_probs=125.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.-+.+|+.|||..++|||+|+.+++.+.+.....+.- - ....++.+++....+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-~-~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-G-RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC-c-cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 4467999999999999999999999998876553332 2 334444466666777888888832 33356779999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCC--CcccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR--HLCAVSTEDAKAFAER-ENTFFMETSALESMNVEN 165 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~ 165 (217)
||||.+.+..+|+.+..+...+..... ..+|.++++++.-.. ..+.+...+..+++.+ ..+.||++++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999999888777765554 678888888876553 2334455555555544 568899999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 027894 166 AFTEVLTQIYHVVSRKAL 183 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (217)
+|+.+.+.++..+.....
T Consensus 180 vf~~~~~k~i~~~~~qq~ 197 (749)
T KOG0705|consen 180 VFQEVAQKIVQLRKYQQL 197 (749)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999999888655533
No 324
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.13 E-value=4.8e-10 Score=86.16 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=56.2
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE---------------EEEEEEeCCCchh------
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------VKAQIWDTAGQER------ 74 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~------ 74 (217)
|+++|.||||||||+|+|++........+..+.+.....+.+.+.. ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999988755444555555555555554432 3589999999321
Q ss_pred -hhhhhHhhhcCCcEEEEEEeCC
Q 027894 75 -YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 -~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
....-...++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1111223357899999999874
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.13 E-value=1.1e-10 Score=89.59 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=39.1
Q ss_pred CcEEEEEeCCCCCCcccCCHHHHHHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 119 IVIMLVGNKADLRHLCAVSTEDAKAFAER--ENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 119 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
..-++|+||+|+........+...+..+. ...+++++|+++++|++++++||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44589999999964222223333333333 35789999999999999999998763
No 326
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1e-09 Score=87.16 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=80.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCC----------------C----CCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSL----------------E----SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
.-+|+-+|.+|||||-..|+--.-.. + ....-|+...+..+.++.....+.+.||||++.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 45789999999999999875411000 0 001225666666666666668899999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
|...+-..+..+|.++.|+|+...-.-+.+ .++.... .+++|++-++||.|...
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcr---lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCR---LRDIPIFTFINKLDREG 147 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHh---hcCCceEEEeecccccc
Confidence 988888888899999999999865332222 2222222 27899999999999754
No 327
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.9e-09 Score=83.56 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC----------------eEEEEEEEeCCCc----
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED----------------KIVKAQIWDTAGQ---- 72 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~Dt~G~---- 72 (217)
.+++.+||.||+|||||.|+++.........|..|++...-.+.+.. ....+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999886544445555555554443321 2346889999982
Q ss_pred ---hhhhhhhHhhhcCCcEEEEEEeCC
Q 027894 73 ---ERYRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 73 ---~~~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
+.....-..-++.+|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 111111223468899999999987
No 328
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.2e-09 Score=90.78 Aligned_cols=117 Identities=25% Similarity=0.293 Sum_probs=83.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccc---------------ceeEEEEEEE-----ECCeEEEEEEEeC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI---------------GVEFATRSIR-----VEDKIVKAQIWDT 69 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~-----~~~~~~~~~l~Dt 69 (217)
.+...+|+++|+-++|||+|+.-|..+..+.....+. +........+ ..++.+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4557899999999999999999998876533211100 1222222111 1456678899999
Q ss_pred CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 130 (217)
||+-.|..-....++.+|++++|+|+.+.-.+..-.-....+. .+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 9998888888888999999999999988766553332323332 57899999999997
No 329
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.09 E-value=4.7e-09 Score=85.41 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=84.0
Q ss_pred eeEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHhccCC
Q 027894 48 VEFATRSIRV-EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRGHTD 116 (217)
Q Consensus 48 ~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~~~~ 116 (217)
.......+.+ .+ ..+.++|++|+...+.-|..++.+++++|||+++++-+ .+.+.-.++..+.....
T Consensus 223 ~Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 223 TGITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp SSEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 3344444444 44 67899999999999999999999999999999987522 13333334444443322
Q ss_pred -CCCcEEEEEeCCCCCC------c----------c--cCCHHHHHHHHHH------------cCCcEEEeccCCCCCHHH
Q 027894 117 -SNIVIMLVGNKADLRH------L----------C--AVSTEDAKAFAER------------ENTFFMETSALESMNVEN 165 (217)
Q Consensus 117 -~~~p~iiv~nK~D~~~------~----------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~ 165 (217)
.+.|+||++||.|+-. . - .-..+.+..+... ..+.++.++|.+...+..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 6899999999999821 0 0 1234555555432 123467899999999999
Q ss_pred HHHHHHHHH
Q 027894 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
+|+.+.+-+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 998887643
No 330
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.6e-09 Score=79.83 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=100.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh---hhhHhhhcCCcE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR---AITSAYYRGAVG 88 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ 88 (217)
...+|+++|...+||||+-+.......+.....- ..+.....-.+.+..+.+.+||.|||-.+. -.....++.+.+
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlfl-ESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFL-ESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEe-eccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 3477999999999999998877665543322110 000001111123355789999999975432 123557899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcc-cCC-H----HHHHHHHHH-----cCCcEEEe
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLC-AVS-T----EDAKAFAER-----ENTFFMET 155 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~-~~~-~----~~~~~~~~~-----~~~~~~~~ 155 (217)
+++|+|+.+.- .+.+.++...+.+.. ++++.+-+++.|.|...+. .+. . ....+-... ..+.|+-+
T Consensus 105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999986642 233344433333322 2788889999999974321 111 0 111111111 22446666
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894 156 SALESMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
|..+ ..+-|.|..+++.++.+.+--
T Consensus 184 SIyD-HSIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 184 SIYD-HSIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred eecc-hHHHHHHHHHHHHHhhhchhH
Confidence 6654 568999999999999887643
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=2.6e-09 Score=78.41 Aligned_cols=95 Identities=19% Similarity=0.091 Sum_probs=66.6
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHc
Q 027894 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERE 148 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~ 148 (217)
.+...+..+++.+|++++|+|++++.. .|...+.... .+.|+++|+||+|+... ....+....+. ...
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhc
Confidence 357788889999999999999988642 1112221112 46899999999998642 23333344333 223
Q ss_pred CC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 149 NT---FFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 149 ~~---~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
+. .++++||++++|++++++.|.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 33 5899999999999999999988764
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.01 E-value=2e-09 Score=76.50 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=65.9
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEE
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFME 154 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
++.+..+.++++|++++|+|+.++...... .+...+.. .+.|+++|+||+|+.+... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 456677888899999999999876533221 22222221 4689999999999853211 11111333445678999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027894 155 TSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999988765
No 333
>PRK12289 GTPase RsgA; Reviewed
Probab=98.94 E-value=4.9e-09 Score=83.52 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=68.0
Q ss_pred hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894 77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.+....+.++|.+++|+|+.++. +...+..|+..+.. .++|+++|+||+|+....+ ...........+++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34455689999999999998876 44466777766643 5789999999999854211 122233344678899999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027894 156 SALESMNVENAFTEVLTQ 173 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~ 173 (217)
||+++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888653
No 334
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=5.8e-09 Score=81.29 Aligned_cols=88 Identities=15% Similarity=0.028 Sum_probs=68.2
Q ss_pred HhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894 80 SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL 158 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
...+.++|.+++|+|+.++. ++..++.|+..+.. .++|+++|+||+|+.+.. .......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 33578999999999999987 88888888887764 468999999999996531 1122233344578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLT 172 (217)
Q Consensus 159 ~~~~v~~~~~~i~~ 172 (217)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887754
No 335
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.92 E-value=2.6e-09 Score=76.90 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=41.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
...++|+++|.+|+|||||+|+|.+....... ...+++.....+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 44589999999999999999999987653332 3334444445554443 478999999
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.91 E-value=3.5e-09 Score=73.92 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=40.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
+++++|.+|+|||||+|++.+....... ...+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999988764332 2334445555555544 4799999994
No 337
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.91 E-value=6.8e-09 Score=77.32 Aligned_cols=155 Identities=22% Similarity=0.180 Sum_probs=94.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
..+|.++|.|++|||||+..+.+..-+.......+.....-.+.+.+ .++++.|.||..+ .........+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 45899999999999999999988654333322222222222233333 5789999999421 12233455678
Q ss_pred CcEEEEEEeCCChhhHHHH-----------------------------------------HHHHHHHhc-----------
Q 027894 86 AVGALLVYDVTRHVTFENV-----------------------------------------ERWLKELRG----------- 113 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~-----------------------------------------~~~~~~l~~----------- 113 (217)
|+.+++|.|+-.|-+-..+ ...+...+.
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 9999999998653221110 111111000
Q ss_pred --------cCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 114 --------HTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-FMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 114 --------~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
... ..+|++.++||+|.. +.++..-. +.++ .+++||..+.|++++++.+.+++--.
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsI-----SiEELdii---~~iphavpISA~~~wn~d~lL~~mweyL~Lv 283 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSI-----SIEELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLKLV 283 (358)
T ss_pred chhhhhhhhccCceeeeeeeeeccccee-----eeecccee---eeccceeecccccccchHHHHHHHhhcchhe
Confidence 011 247889999999953 32322111 2333 68899999999999999998876543
No 338
>PRK00098 GTPase RsgA; Reviewed
Probab=98.88 E-value=9.9e-09 Score=80.43 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=64.8
Q ss_pred hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+.++|++++|+|+.++.+... +..|+..+.. .++|+++|+||+|+.+... ............+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999988876544 4677766653 5689999999999853221 122334455667889999999999
Q ss_pred CCHHHHHHHHH
Q 027894 161 MNVENAFTEVL 171 (217)
Q Consensus 161 ~~v~~~~~~i~ 171 (217)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998763
No 339
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.87 E-value=8.1e-08 Score=75.50 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=95.8
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC----------------cccceeEEEEEEEECCeE----------
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK----------------STIGVEFATRSIRVEDKI---------- 61 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---------- 61 (217)
+..+..+.|.+.|+...|||||+-.|..+....... .+..+.+...-+. +++.
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~-dgk~~rlknPld~a 190 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFD-DGKVVRLKNPLDEA 190 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEec-CCceEeecCcccHH
Confidence 346678999999999999999999887654433211 1112222222221 1111
Q ss_pred ----------EEEEEEeCCCchhhhhhh--HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 62 ----------VKAQIWDTAGQERYRAIT--SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 62 ----------~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
--+.++||.|++.|.... ..+-.+.|-.++++.+++..+-..-+.+ .....-+.|+++++||+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL----gi~~a~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL----GIALAMELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh----hhhhhhcCCEEEEEEecc
Confidence 246799999999986554 3344689999999999987653222222 111125799999999999
Q ss_pred CCCcccC--CHHHHHHHHH----------------------HcC---CcEEEeccCCCCCHHHH
Q 027894 130 LRHLCAV--STEDAKAFAE----------------------REN---TFFMETSALESMNVENA 166 (217)
Q Consensus 130 ~~~~~~~--~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~v~~~ 166 (217)
+.++... ..+++.++.+ +.+ +|+|.+|+.+++|.+-+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 9642211 1122222211 111 57999999999997643
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.86 E-value=9e-09 Score=73.18 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=39.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999987653332 3334444444444332 268999999
No 341
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=2e-08 Score=80.04 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=68.0
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHcCCcEEEeccCCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
...++|.+++|+++....++..++.|+..+.. .++|+++|+||+|+....+. ...+........+.+++++||+++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35679999999999888899999999876543 56899999999999643211 112223344567889999999999
Q ss_pred CCHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQ 173 (217)
Q Consensus 161 ~~v~~~~~~i~~~ 173 (217)
+|++++++.+...
T Consensus 194 ~GideL~~~L~~k 206 (347)
T PRK12288 194 EGLEELEAALTGR 206 (347)
T ss_pred cCHHHHHHHHhhC
Confidence 9999999888653
No 342
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.85 E-value=2.7e-07 Score=75.67 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=100.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCc-------------------------------------------
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKS------------------------------------------- 44 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~------------------------------------------- 44 (217)
..+...||+|||..++||||.+..+.....-+. +..
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 356789999999999999999998765432221 100
Q ss_pred ----------ccceeEEEEEEEECCeE-EEEEEEeCCCc-------------hhhhhhhHhhhcCCcEEEEEEeCCChhh
Q 027894 45 ----------TIGVEFATRSIRVEDKI-VKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDVTRHVT 100 (217)
Q Consensus 45 ----------~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (217)
.-+....+..+++.+.+ -++.++|.||. +....+..++..+.+++|+|+--...+.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 00222233333343332 36789999992 3345667788999999999984332221
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc-----EEEeccCCCCCHHHHHHHHHHHHH
Q 027894 101 FENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF-----FMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
-. ...-..+......+...|+|++|.|+.+.+-.+...++.+....-+| ||-+-.-.|.. ++-.+.|-++=.
T Consensus 464 ER--SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSIdaIR~YEE 540 (980)
T KOG0447|consen 464 ER--SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIEAIREYEE 540 (980)
T ss_pred hh--hhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHHHHHHHHH
Confidence 11 11122233333467889999999999887778888888887764443 55443333322 333444444433
Q ss_pred HHh
Q 027894 176 HVV 178 (217)
Q Consensus 176 ~~~ 178 (217)
+.+
T Consensus 541 ~FF 543 (980)
T KOG0447|consen 541 EFF 543 (980)
T ss_pred HHh
Confidence 333
No 343
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=76.05 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=95.1
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc-ccceeEEEEEEEECCeEEEEEEEeCCC----------chhhhh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYRA 77 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~ 77 (217)
..+..++++++|.+|+|||||++-++.......... ..+.+.....+.+. ..+.++|.|| ...+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence 456779999999999999999999988654333222 44444445555444 3578999999 234555
Q ss_pred hhHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc----CCHHHHHH----HH-
Q 027894 78 ITSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA----VSTEDAKA----FA- 145 (217)
Q Consensus 78 ~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~----~~- 145 (217)
....|+.+- --+++++|++-+-.-.+. ..++.+.+ .++|+.+|+||+|...... -....+.. +.
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 555555432 235667776643211111 11122222 5799999999999842110 00011111 11
Q ss_pred --HHcCCcEEEeccCCCCCHHHHHHHHHH
Q 027894 146 --ERENTFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 146 --~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
-....|++.+|+.++.|+++++..|.+
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 112356778999999999998876654
No 344
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=4.1e-08 Score=75.91 Aligned_cols=145 Identities=20% Similarity=0.119 Sum_probs=100.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC--------------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
-+.++|.-+|+...|||||-.++..-.... .....-+++....++.+.....++--.|+||+..|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 356899999999999999988775421100 011334677778888887777788899999999998
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc---CCHHHHHHHHHHcC----
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA---VSTEDAKAFAEREN---- 149 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 149 (217)
.+...-..+.|+.|+|+.++|..=-+.-+.++. ..+. .-..+++++||.|+.++.+ .-+.+++++...++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-ArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLL-ARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 888888889999999999999653222222211 1111 1244777899999974332 23456777777766
Q ss_pred -CcEEEeccC
Q 027894 150 -TFFMETSAL 158 (217)
Q Consensus 150 -~~~~~~Sa~ 158 (217)
+|++.-||+
T Consensus 209 ~~PvI~GSAL 218 (449)
T KOG0460|consen 209 NTPVIRGSAL 218 (449)
T ss_pred CCCeeecchh
Confidence 468777754
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.80 E-value=4e-08 Score=79.02 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=68.9
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH----HHHHH
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK----AFAER 147 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~ 147 (217)
.+.|......+.+.++++++|+|+.+... .|...+.... .+.|+++|+||+|+.+ +....+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 46788888888899999999999977542 2333333332 3678999999999864 233333443 34556
Q ss_pred cCC---cEEEeccCCCCCHHHHHHHHHHH
Q 027894 148 ENT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 148 ~~~---~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
.++ .++.+||+++.|++++|+.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 38999999999999999998654
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=3e-08 Score=71.54 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=41.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++++++|.+|+|||||++++.+..+... ....+.+.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999999776432 2333344444445443 34789999993
No 347
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.8e-07 Score=75.89 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=85.4
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
..+-++.+=++|||++|+||||||+.|...-......... ...++ +.++..+++++++|.. . +......+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~----GPiTv-vsgK~RRiTflEcp~D--l-~~miDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR----GPITV-VSGKTRRITFLECPSD--L-HQMIDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC----CceEE-eecceeEEEEEeChHH--H-HHHHhHHHhh
Confidence 3345566788999999999999999987753211111111 11222 5677789999999832 2 2344456779
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcccCCHHHHH----HHHHH--cCCcEEEeccCC
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCAVSTEDAK----AFAER--ENTFFMETSALE 159 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~ 159 (217)
|.+++++|..-.-..+.+ .+++-+.. .+.| ++-|++..|+........+..+ .|+.+ .|+.+|.+|-..
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999999998765443333 34444443 3344 5668999999643222222222 22222 467888888654
No 348
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=9.1e-09 Score=78.40 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=102.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCcccceeEEEE--EE-EE--------------------------
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATR--SI-RV-------------------------- 57 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~~~~~~~~~~--~~-~~-------------------------- 57 (217)
.+-+++|.-+|+.-.||||+++++.+-. |........++..... .+ ..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4568999999999999999999886631 1111111111110000 00 00
Q ss_pred ---CC--e-EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 58 ---ED--K-IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 58 ---~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
.+ + ..++.++|+||++-.......-..-.|++++++.............-+..+... +=..++++-||+|+.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli 192 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLI 192 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhh
Confidence 00 0 135789999999877766666666678899988877533222222222222111 224578889999996
Q ss_pred CcccC--CHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 132 HLCAV--STEDAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 132 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.+.+. ..+++..|... .+.|++++||.-+.|++.+.+.|+..+..
T Consensus 193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 54322 23455566554 45789999999999999999999887753
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.6e-07 Score=75.97 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=82.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeE---------------------------------------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEF--------------------------------------- 50 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~--------------------------------------- 50 (217)
+...||++.|..++||||++|+++.....|... +++..-.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 456899999999999999999998865544321 1110000
Q ss_pred ---EEEEEEECCeE-----EEEEEEeCCCch---hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCC
Q 027894 51 ---ATRSIRVEDKI-----VKAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNI 119 (217)
Q Consensus 51 ---~~~~~~~~~~~-----~~~~l~Dt~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~ 119 (217)
....+.++... -.+.++|.||.+ ....-...+...+|++++|.++.+.-+..+.. ++..... .+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc---cCC
Confidence 00001111110 146789999943 34444566678899999999987765443332 3333322 345
Q ss_pred cEEEEEeCCCCCCcccCCHHHHHHHHHHcCC--------cEEEeccC
Q 027894 120 VIMLVGNKADLRHLCAVSTEDAKAFAERENT--------FFMETSAL 158 (217)
Q Consensus 120 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~ 158 (217)
.++|+-||+|.....+.-.+++..-.....+ -+|++|++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 5777789999865333333333333333221 27778865
No 350
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.6e-07 Score=73.60 Aligned_cols=157 Identities=21% Similarity=0.236 Sum_probs=98.2
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----------------Cc-------ccceeEEEEEEEEC----
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KS-------TIGVEFATRSIRVE---- 58 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~---- 58 (217)
++.++-..+|++++|.-.+|||||+-.|..+...... .. ..+++.....+.+.
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 3455566899999999999999999988776443321 11 11222222222221
Q ss_pred ------CeEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894 59 ------DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 59 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 130 (217)
...-.++++|.+|+.+|.......+. -.|.+++|+++...-++..-+. +..+.. -++|++++++|+|+
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~A---L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIAA---LNIPFFVLVTKMDL 315 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHHH---hCCCeEEEEEeecc
Confidence 11135789999999999877655544 3578899999987766543332 222222 57999999999999
Q ss_pred CCcc------------------------cCCHHHHHHHHHH----cCCcEEEeccCCCCCHHHH
Q 027894 131 RHLC------------------------AVSTEDAKAFAER----ENTFFMETSALESMNVENA 166 (217)
Q Consensus 131 ~~~~------------------------~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~ 166 (217)
.... ..+.+++-..+.+ .=.|+|.+|+.+|+|++-+
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 5421 0122222222222 2257999999999997654
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.71 E-value=3.3e-08 Score=72.56 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-------CCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+++++|.+|+|||||||+|.+..... ......+++.....+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 589999999999999999999864311 1122234555555555543 479999999
No 352
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.71 E-value=1.7e-07 Score=74.62 Aligned_cols=83 Identities=18% Similarity=0.040 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchh---
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQER--- 74 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 74 (217)
++++++|.|++|||||++.+++... .....+..+.......+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 4443344445555555555442 23678999999422
Q ss_pred ----hhhhhHhhhcCCcEEEEEEeCC
Q 027894 75 ----YRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 75 ----~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
....-...++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1223344578999999999985
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=8.9e-08 Score=80.92 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=87.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC--------------CCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE--------------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
+......-+|+++.+...|||||+..|+...--.+ ..-+-+++.....+..-.+.+.+.++|+||+
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 44566778899999999999999999876432111 1123344444445555556688999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 130 (217)
-.|.+......+-+|++++++|+..+-..+......+.+. .+..+++|+||+|.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 9999988888999999999999987655444444444443 45567899999994
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.70 E-value=5.6e-08 Score=75.48 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=42.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++|+++|.+|+|||||+|+|.+....... ...+.+.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999987644332 2334444455555543 4799999995
No 355
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=8.4e-08 Score=72.31 Aligned_cols=116 Identities=23% Similarity=0.372 Sum_probs=73.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC----CcccceeEEEEEEEECCeEEEEEEEeCCCc-------hhhhhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES----KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-------ERYRAI 78 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~ 78 (217)
.-+.++|+.||.+|.||||||..|.+-.+.... .++.........+.-.+..++++++||.|- ++|..+
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 346799999999999999999999998775433 244444444444545677788999999981 111100
Q ss_pred ------------------h--Hhhhc--CCcEEEEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCC
Q 027894 79 ------------------T--SAYYR--GAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 79 ------------------~--~~~~~--~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~ 130 (217)
. ...++ ..++++|.+.++. .++..+.- .+..+. .++.+|.|+.|.|-
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDt 188 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADT 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhh
Confidence 0 11122 3567777777654 34554432 334443 45667888889995
No 356
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=1e-07 Score=67.70 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=57.9
Q ss_pred hhcCCcEEEEEEeCCChhh--HHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894 82 YYRGAVGALLVYDVTRHVT--FENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.+..+|++++|+|+.++.. ...+..++. .. ..+.|+++|+||+|+.+... .......+.+.+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998743 223333332 22 24589999999999854221 11122222222333357899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIY 175 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~ 175 (217)
+.|++++++.+.+.+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999877543
No 357
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=4.1e-06 Score=58.40 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=80.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCC-Cc------------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTA-GQ------------------ 72 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~------------------ 72 (217)
..+||++.|+||||||||+.++.+......+ .- -.+....+.-+++..=|.+.|+. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999988764332221 11 22344455556666777777765 30
Q ss_pred ---hhhh----hhhHhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHH
Q 027894 73 ---ERYR----AITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF 144 (217)
Q Consensus 73 ---~~~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~ 144 (217)
+.+. ......++.+|++ ++|---+ .+. ...+...+......+.|++.++.+.+..+ .+.+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P-------~v~~- 148 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP-------LVQR- 148 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh-------HHHH-
Confidence 1111 2223334556744 4443222 221 13444555555557788888887776422 1222
Q ss_pred HHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 145 AERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
.+..+..++. .+.+|-+.++..|+..+
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 3333433333 55566667777777655
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.68 E-value=7.4e-08 Score=68.36 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=39.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
...+++++|.+|+|||||++++.+..... ..++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45788999999999999999999765332 234445444433333333 589999999
No 359
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=8.5e-08 Score=74.86 Aligned_cols=58 Identities=26% Similarity=0.402 Sum_probs=42.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++|+++|.+|+|||||+|+|.+....... ...+.+.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 35689999999999999999999987653332 3344455555555543 4789999994
No 360
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.66 E-value=5.2e-08 Score=77.08 Aligned_cols=57 Identities=26% Similarity=0.381 Sum_probs=46.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
..++++++|.||+|||||||+|.+....... ...|.+.....+..+.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence 3578999999999999999999998763333 44577777888877664 799999994
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.65 E-value=2e-07 Score=67.24 Aligned_cols=100 Identities=17% Similarity=0.054 Sum_probs=64.9
Q ss_pred CCCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894 69 TAGQ-ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER 147 (217)
Q Consensus 69 t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.||+ .+........+.++|++++|+|+.++...... .+...+ .+.|+++|+||+|+.+... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 3554 23334456678899999999999876542211 122222 3578999999999853211 1112233333
Q ss_pred cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 148 ENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.+..++.+||+++.|++++.+.+.+.+..
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 45568999999999999999999887643
No 362
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.63 E-value=1e-07 Score=73.73 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=62.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC---------------eEEEEEEEeCCCch--
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED---------------KIVKAQIWDTAGQE-- 73 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~-- 73 (217)
...++|.+||.|++|||||+|.|++....+.-.|..+++.....+.+.. .+..++++|++|.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3678999999999999999999999988776667667776666655532 23578999999821
Q ss_pred -----hhhhhhHhhhcCCcEEEEEEeCC
Q 027894 74 -----RYRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 74 -----~~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
.....-..-++.+|+++.|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 11111223457899999999875
No 363
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.61 E-value=8.2e-08 Score=70.57 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=81.6
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHhccCC-CCCcEEEEEeCC
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRGHTD-SNIVIMLVGNKA 128 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~ 128 (217)
..+.+.+.|.+|+..-+.-|.+++.++-.++|++.++..+ -.++...++..+..... .+.++|+++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3356789999999988899999999988888887776422 22233344445544443 678999999999
Q ss_pred CCCCcc----------------cCCHHHHHHHHHHc----C------CcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 129 DLRHLC----------------AVSTEDAKAFAERE----N------TFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 129 D~~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
|+.+++ ......+++|..+. + +.-.++.|.+-+|++-+|..+-..+++..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 985322 22334455555431 1 12355778889999999998888777654
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=3.9e-07 Score=64.60 Aligned_cols=86 Identities=17% Similarity=0.022 Sum_probs=55.9
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+..... .......+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887654322 2221 111125689999999999854211 011112233334556899999999999999
Q ss_pred HHHHHHHHHH
Q 027894 167 FTEVLTQIYH 176 (217)
Q Consensus 167 ~~~i~~~~~~ 176 (217)
++.+.+...+
T Consensus 77 ~~~i~~~~~~ 86 (155)
T cd01849 77 ESAFTKQTNS 86 (155)
T ss_pred HHHHHHHhHH
Confidence 9999877543
No 365
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=6.7e-08 Score=76.74 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=90.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN--------EFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
...-+|.++.+..+||||.-.+++.- .+.... ....|++.....+.++.+..++.++||||+-.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 34568999999999999999887542 111111 12236777778888888889999999999998
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
|+--...+++-.|+++.|||.+..-.-+.+-.|.+. ...++|-+.++||+|...
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence 988888899999999999999876555555556443 236789999999999854
No 366
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.58 E-value=7.4e-07 Score=81.70 Aligned_cols=112 Identities=25% Similarity=0.334 Sum_probs=67.0
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCC----Cc--ccceeEEEEEEEECCeEEEEEEEeCCCc----h----hhhhhhHh
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLES----KS--TIGVEFATRSIRVEDKIVKAQIWDTAGQ----E----RYRAITSA 81 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----~----~~~~~~~~ 81 (217)
-+|+|++|+||||+|++- +..++-.. .. ..+-+..-..+ +.+ +..++||+|. + .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-f~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-FTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-ecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999876 33332211 01 11111111111 112 3579999992 1 12233444
Q ss_pred hh---------cCCcEEEEEEeCCChh-----hH----HHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 82 YY---------RGAVGALLVYDVTRHV-----TF----ENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 82 ~~---------~~~d~ii~v~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
++ +..+++|+++|+.+-- .. ..+..-+..+....+-..|+.+++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 33 3589999999987521 11 2334445556666667899999999999853
No 367
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.57 E-value=6e-07 Score=67.25 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=75.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHhccCC-CCCcEEEEEeCCCC
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRGHTD-SNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~ 130 (217)
+++.++|.+|+..-+.-|...+..+-++|||+..+.-+ -+.+.-.++..+...+. ..+-+|+++||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 56899999999999999999999999999999887421 12222222222322222 45668999999998
Q ss_pred CCcc----------------------------c----C------CHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHH
Q 027894 131 RHLC----------------------------A----V------STEDAKAFAER-----ENTFFMETSALESMNVENAF 167 (217)
Q Consensus 131 ~~~~----------------------------~----~------~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~ 167 (217)
..++ . + ..++....... +-+.+.++.|.+-++++.+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 3110 0 0 00111111111 12446778899999999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
+.....+....
T Consensus 362 nDcrdiIqr~h 372 (379)
T KOG0099|consen 362 NDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHH
Confidence 99887776554
No 368
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.57 E-value=2.5e-06 Score=68.36 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=84.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC--------------ccccee----------EEEEEEEE-CCeEEEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK--------------STIGVE----------FATRSIRV-EDKIVKAQI 66 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~--------------~~~~~~----------~~~~~~~~-~~~~~~~~l 66 (217)
..+=|.|||+.-+||||||++|....+.|... +..|.+ .....+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 45678999999999999999996643222110 111111 11123333 466789999
Q ss_pred EeCCC-------------chhh------------hhhhHhh----h--cCCcEEEEEEeCC----ChhhHHHH-HHHHHH
Q 027894 67 WDTAG-------------QERY------------RAITSAY----Y--RGAVGALLVYDVT----RHVTFENV-ERWLKE 110 (217)
Q Consensus 67 ~Dt~G-------------~~~~------------~~~~~~~----~--~~~d~ii~v~d~~----~~~s~~~~-~~~~~~ 110 (217)
+|+.| .+++ .....-- + +..-++++.-|-+ .++++..+ ++....
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99988 0111 1000000 1 1122444444443 13444444 445666
Q ss_pred HhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894 111 LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 111 l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
|.. -++|+++++|-.+... +...+...++..+++++++.+++..
T Consensus 176 Lk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence 665 5699999999998543 3455667778888999998888764
No 369
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.53 E-value=9.8e-08 Score=67.33 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCC------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLE------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
.++++|++|||||||||.|.+...... .....-++.....+.++.. ..++||||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 579999999999999999998742221 1111111222334444332 478999996544
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=3e-07 Score=65.22 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=38.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
....+|+++|.+|+|||||+|.+.+..... ...+..+.. ...+... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 356889999999999999999999876422 222222222 2233333 2479999999
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.49 E-value=2e-06 Score=67.93 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC---------------------cccceeEEEEEEEE-------------C
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK---------------------STIGVEFATRSIRV-------------E 58 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~ 58 (217)
.--|+++|++|+||||++..|.......... ...+..+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999886532111000 00011111110000 0
Q ss_pred CeEEEEEEEeCCCchhh--------hhhhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 027894 59 DKIVKAQIWDTAGQERY--------RAITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGN 126 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~--------~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~n 126 (217)
...+.+.++||||.... ...... .-...+..++|+|++... +.+... ..+.... .+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEE
Confidence 12357899999995321 111111 112467789999998643 223222 2221111 23467899
Q ss_pred CCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 127 KADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 127 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
|.|... ..-.+...+...+.|+.+++ +|++++++-
T Consensus 268 KlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 999543 23345555666799988888 677776653
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.48 E-value=1.4e-06 Score=67.70 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=66.2
Q ss_pred CCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894 69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER 147 (217)
Q Consensus 69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.|||- +........+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+... .....+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 35652 2234455667899999999999876543221 111222 3578999999999854211 1111222333
Q ss_pred cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 148 ENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
.+.+++.+||+++.|++++.+.+.+.+.+..
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 4667899999999999999999888775543
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=7e-07 Score=62.26 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=52.2
Q ss_pred HhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 80 SAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
...+..+|++++|+|+.++.+.. .+..++... . .+.|+++|+||+|+.++. ...+..++....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence 34568899999999998876543 334444332 1 468999999999985422 122334455556778999999
Q ss_pred CCCCC
Q 027894 158 LESMN 162 (217)
Q Consensus 158 ~~~~~ 162 (217)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 87653
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.47 E-value=1.2e-06 Score=62.33 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=36.8
Q ss_pred EEEEEEeCCCchhhhhhhHh--------hhcCCcEEEEEEeCCChhhH-HHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894 62 VKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDVTRHVTF-ENVERWLKELRGHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 130 (217)
.+..++|++|-......... ..-..|.+++++|+...... .....+..++.... ++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 56789999995322222211 22347889999997653321 12233445554322 678999995
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.44 E-value=4.1e-07 Score=72.58 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=36.0
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCC-c-----ccceeEEEEEEEECCeEEEEEEEeCCCchhhh
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESK-S-----TIGVEFATRSIRVEDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
++|+|.+|||||||||+|++........ + ..-++.....+.+.+. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 7899999999999999999864322111 1 0012223333444322 2599999976553
No 376
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.44 E-value=2.9e-06 Score=63.82 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=52.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCC---cccceeEEEEEEEECCeEEEEEEEeCCCchh------hhhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLESK---STIGVEFATRSIRVEDKIVKAQIWDTAGQER------YRAIT 79 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~ 79 (217)
.+..-|+|+|++++|||+|+|.|++. .+..... -|.++-.....+.. +....+.++||+|... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 35577999999999999999999998 5544332 22222222222111 2346799999999432 12222
Q ss_pred HhhhcC--CcEEEEEEeCCC
Q 027894 80 SAYYRG--AVGALLVYDVTR 97 (217)
Q Consensus 80 ~~~~~~--~d~ii~v~d~~~ 97 (217)
...+.. ++++|+..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 233333 788888777654
No 377
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.44 E-value=3.8e-07 Score=74.22 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=44.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
...+.|++||.|||||||+||.|.+...-..+ .|.|-+.+-.++.+.. .+.+.|+||
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCC
Confidence 34799999999999999999999998764433 5666666666665654 378999999
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.43 E-value=2.8e-06 Score=67.40 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=55.0
Q ss_pred EEEEEEeCCCchhhh----hhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
..+.++||+|..... .....+ ..+.|.+++|+|+..... .+.. ...+.... .+--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~-a~~f~~~~---~~~giIlTKlD~~~--- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQ-AREFNEAV---GIDGVILTKVDADA--- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHH-HHHHHhcC---CCCEEEEeeecCCC---
Confidence 468999999954211 111112 235788999999876532 1211 12222111 12466799999743
Q ss_pred CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 136 VSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
..-.+..++...+.|+.+++ +|++++++..
T Consensus 294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 22334455556688888877 6888876653
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=98.39 E-value=1.8e-06 Score=69.41 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=60.7
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALES 160 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 160 (217)
...++|.+++|+++....+...++.++..+.. .+++.++|+||+|+.+.. .+....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 35789999999999755555567777777665 457778999999996531 111222222 35678999999999
Q ss_pred CCHHHHHHHHH
Q 027894 161 MNVENAFTEVL 171 (217)
Q Consensus 161 ~~v~~~~~~i~ 171 (217)
.|++++..++-
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999887763
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.38 E-value=3.8e-06 Score=67.78 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=61.2
Q ss_pred hhhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH----HHHH
Q 027894 73 ERYRAITSAYYRGAV-GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA----FAER 147 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~~ 147 (217)
+.|....... ...+ .+++|+|+.|... .|...+.... .+.|+++|+||+|+.+ .....++... +++.
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence 3455544443 4444 8999999987442 2333333332 3678999999999964 2333333333 3455
Q ss_pred cCC---cEEEeccCCCCCHHHHHHHHHHH
Q 027894 148 ENT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 148 ~~~---~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
.++ .++.+||+++.|++++++.|.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 565 58999999999999999998664
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.38 E-value=6.5e-07 Score=71.50 Aligned_cols=56 Identities=27% Similarity=0.296 Sum_probs=35.2
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCC-cc-----cceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESK-ST-----IGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
++|+|++|+|||||||.|++........ +. --++.....+...+. ..++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 7999999999999999999764322111 11 002233344444332 27999999643
No 382
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.36 E-value=1.1e-05 Score=62.36 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=55.2
Q ss_pred EEEEEEeCCCchhhhhhhH-------hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 62 VKAQIWDTAGQERYRAITS-------AYY-----RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
+.+.++||||......... ... ..+|.+++|+|++... +.+... ..+.... .+.-+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~-~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQA-KVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHH-HHHHhhC---CCCEEEEEccC
Confidence 6789999999543221111 111 2378899999997542 233222 2222111 13467899999
Q ss_pred CCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 130 LRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
... ..-....+....+.|+.+++ +|++++++-
T Consensus 229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 743 23445555566788988777 667665543
No 383
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.36 E-value=2.5e-06 Score=67.21 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=83.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCcccceeEEEEEEEE------------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRV------------------ 57 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~------------------ 57 (217)
..+||+++|...+|||||+-.|........ +..|........-+..
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 468999999999999999987766433221 1111111111111110
Q ss_pred ---CCeEEEEEEEeCCCchhhhhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 58 ---EDKIVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 58 ---~~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
++..-.++++|.+|+++|......-. +-.|..++++-+.-.- .-..+.-+.. ...-.+|+++|.+|+|+-.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgL---ALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGL---ALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhh---hhhhcCcEEEEEEeeccCc
Confidence 11123478999999999976653322 3456666766654321 1111111111 1124689999999999854
Q ss_pred cccC--CHHHHHHHHHH--------------------------cCCcEEEeccCCCCCHHHH
Q 027894 133 LCAV--STEDAKAFAER--------------------------ENTFFMETSALESMNVENA 166 (217)
Q Consensus 133 ~~~~--~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~ 166 (217)
.+.. ....+..+.+. .=||+|.+|..+|+|+.-+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 2211 11112222221 1257899999999997644
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=7.8e-07 Score=71.71 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC----CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
.+++++|.+|||||||||+|+.... ........+++.....+.+++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986431 1111223344444555555432 479999995
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.35 E-value=1.2e-06 Score=70.47 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC----CCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFS----LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
.+|+++|.+|+|||||+|+|++.... .......+++.....+..++ .+.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCC
Confidence 48999999999999999999985421 11122233444444555533 2579999995
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.34 E-value=3.6e-06 Score=65.80 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894 69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER 147 (217)
Q Consensus 69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.|||- +-.......+..+|++++|+|+.++.+... .++..+. .+.|+++|+||+|+.+... .....++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 46652 223334556789999999999987654322 1122222 2588999999999853210 1122222334
Q ss_pred cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 148 ENTFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
.+.+++.+|++++.|++++.+.+.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999999988877554
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.33 E-value=7.8e-06 Score=66.70 Aligned_cols=86 Identities=14% Similarity=-0.001 Sum_probs=46.4
Q ss_pred EEEEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 61 IVKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
.+++.++||+|...... ....+ ..+.+.+++|+|++....-. .....+... -.+--+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a-- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA-- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC--
Confidence 36789999999532211 11111 23567899999987653322 122222221 134577899999642
Q ss_pred cCCHHHHHHHHHHcCCcEEEec
Q 027894 135 AVSTEDAKAFAERENTFFMETS 156 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~S 156 (217)
..-.+.......+.|+.+++
T Consensus 254 --rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 --KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred --CccHHhhhHHHHCCCeEEEc
Confidence 22223444445566654444
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.32 E-value=1.3e-06 Score=66.58 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=35.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCC------CcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLES------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
.++++|++|+|||||||+|.+....... ....-++.....+...+ ..++||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 6799999999999999999986432211 11111222333343433 279999996443
No 389
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.9e-05 Score=59.05 Aligned_cols=180 Identities=21% Similarity=0.287 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCC--ChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 13 LYKVVLIGDSGV--GKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE--DKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 13 ~~~I~vvG~~~~--GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..-++|+|-+|+ ||.+|+.+|....+.....+...+.++..++... ...+.+.+.... .+.+.. .........+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-Ccccccceee
Confidence 356789999998 9999999999888877666655555554444322 112233332211 112211 1122344567
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc---------------------------c-------
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL---------------------------C------- 134 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---------------------------~------- 134 (217)
++++||.+....+..+..|+..-.... .+ ..+.++||.|.... .
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 899999999999999999976544322 22 23456899997320 0
Q ss_pred ----------cCCHHHHHHHHHHcCCcEEEeccCCC------------CCHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 027894 135 ----------AVSTEDAKAFAERENTFFMETSALES------------MNVENAFTEVLTQIYHVVSRKALDIGGDPAAL 192 (217)
Q Consensus 135 ----------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 192 (217)
-.......+|+.++++.+++.++... .|+..+|..+..++-.-..-+.-+ ....|+.
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk~gd-rinepvl 238 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILKNGD-RINEPVL 238 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceecccc-ccCCccC
Confidence 01224456788889999999998532 466666665554433322211111 1124577
Q ss_pred CCCce
Q 027894 193 PKGQT 197 (217)
Q Consensus 193 ~~~~~ 197 (217)
|||..
T Consensus 239 pqgee 243 (418)
T KOG4273|consen 239 PQGEE 243 (418)
T ss_pred CCcce
Confidence 88844
No 390
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3e-06 Score=70.40 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=80.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCC-----C-----------CcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-----S-----------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
..-+|.+.-+-.+||||+-++.+...--.. . ....+++.........+...++.++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 456789999999999999988654211000 0 011133333333333444688999999999888
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.--....++-.|++++|++....-.-+....|.+.-. .++|.|.++||+|.-.
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 7777778899999999999877654455555655433 5799999999999743
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=66.54 Aligned_cols=58 Identities=26% Similarity=0.242 Sum_probs=36.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC------CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF------SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
-.+++|++|+|||||+|+|..... +......--++.+...+.+.+. -.++||||..++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 358999999999999999987422 1112111113334445555322 278999996554
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=1.4e-05 Score=64.13 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEE------------------EEEEEE---------CCeEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFA------------------TRSIRV---------EDKIVK 63 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~~---------~~~~~~ 63 (217)
-.++++|++|+||||++..|....... ......+.+.+ ...... ......
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 468899999999999999987642111 00000001110 000000 012247
Q ss_pred EEEEeCCCchhhhhh---hHhhh---cCCcEEEEEEeCCChh-hHHHHHHHHHHHhccC-CC-CCcEEEEEeCCCCCCcc
Q 027894 64 AQIWDTAGQERYRAI---TSAYY---RGAVGALLVYDVTRHV-TFENVERWLKELRGHT-DS-NIVIMLVGNKADLRHLC 134 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~~---~~~~~---~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~-~~-~~p~iiv~nK~D~~~~~ 134 (217)
+.++||+|....... ....+ ....-.++|++++... ...++..-+....... .. ..+-=+|+||.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 899999995432211 11112 2234568899987643 3333322222221110 00 012356789999633
Q ss_pred cCCHHHHHHHHHHcCCcEEEecc
Q 027894 135 AVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..+....+.|+.+++.
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEec
Confidence 445566777777887665553
No 393
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=8.9e-05 Score=53.55 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=31.4
Q ss_pred CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 117 SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 117 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
.+.|++++.+|... ......+....+..++++ +.+|-+++.+.+++.+
T Consensus 125 ~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 56899999987532 123444555566777777 4567778888877754
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.18 E-value=2.6e-05 Score=56.25 Aligned_cols=83 Identities=17% Similarity=0.026 Sum_probs=46.1
Q ss_pred EEEEEEeCCCchhh----hhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
..+.++|++|...+ ......+. ...+.+++|+|...... .+ .+...+.... + ..-+|.||.|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~--- 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDA--- 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCC---
Confidence 46788999996322 11111222 34899999999865432 22 2333333222 2 3566789999743
Q ss_pred CCHHHHHHHHHHcCCcEEE
Q 027894 136 VSTEDAKAFAERENTFFME 154 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (217)
........+...++|+..
T Consensus 154 -~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 -RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred -CcchhhhhHHHHCcCeEe
Confidence 223334466666776543
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.17 E-value=3.4e-05 Score=56.81 Aligned_cols=86 Identities=15% Similarity=0.028 Sum_probs=48.4
Q ss_pred EEEEEEeCCCchhhhh----hhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
.++.++||+|...... ....++ ...+-+++|++++.... .+.......... + +-=+++||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~~~~~~---~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALAFYEAF---G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHHHHHHS---S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHHHhhcc---c-CceEEEEeecCCC---
Confidence 4689999999432211 111111 25678999999876542 333222222211 1 1245699999633
Q ss_pred CCHHHHHHHHHHcCCcEEEecc
Q 027894 136 VSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..++...+.|+-.++.
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYITT 175 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEES
T ss_pred -CcccceeHHHHhCCCeEEEEC
Confidence 345567777778888666553
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=4.5e-05 Score=63.62 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC---C---CCcc-----------------cceeEEEEEEE------E-CCeEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL---E---SKST-----------------IGVEFATRSIR------V-EDKIV 62 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~---~---~~~~-----------------~~~~~~~~~~~------~-~~~~~ 62 (217)
.-.|+|+|++|+||||++..|...-... . ...+ .+..+....-. + .....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578999999999999998886531100 0 0000 01111100000 0 01236
Q ss_pred EEEEEeCCCchhhhhhhH---hhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894 63 KAQIWDTAGQERYRAITS---AYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~---~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 137 (217)
++.|+||+|......... ..+ ......++|++... +..++...+..+.. ..+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc----c
Confidence 789999999532221110 001 11234577777654 34444444444432 245678999999632 4
Q ss_pred HHHHHHHHHHcCCcEEEecc
Q 027894 138 TEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~Sa 157 (217)
...+..+....+.++.+++.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeC
Confidence 45666777777888666654
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.15 E-value=4.7e-06 Score=65.11 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC------cccceeEEEEEEEECCeEEEEEEEeCCCchhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK------STIGVEFATRSIRVEDKIVKAQIWDTAGQERY 75 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 75 (217)
-.++++|++|+|||||||.|++........ ....++.....+...+. ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 468999999999999999999865432211 11112233334444322 368999997654
No 398
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=1.6e-05 Score=71.88 Aligned_cols=114 Identities=30% Similarity=0.331 Sum_probs=63.3
Q ss_pred EEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEE-EEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhh----
Q 027894 17 VLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFA-TRSIRVEDKIVKAQIWDTAGQ--------ERYRAITSAY---- 82 (217)
Q Consensus 17 ~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~---- 82 (217)
+|+|++|+||||++..- +..|+... ..-.+..-. +..... .-.-.-.++||.|. +.....|..+
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 79999999999998643 22221111 000000000 111111 01123588999982 1233445444
Q ss_pred -----hcCCcEEEEEEeCCChhhH---------HHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 83 -----YRGAVGALLVYDVTRHVTF---------ENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 83 -----~~~~d~ii~v~d~~~~~s~---------~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.+..++||+.+|+++--+. ..+..=+.++.....-..|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2568999999999762211 1222234455555557899999999999864
No 399
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.13 E-value=2.9e-06 Score=67.17 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=49.8
Q ss_pred cccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 3 AYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 3 ~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
+|.+...-...+++.|+|.|++||||+||+|......+.. .+.|++.....+..+. .+.|.|.||.
T Consensus 242 ny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 242 NYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 4444445567899999999999999999999998875543 4455666666665554 4799999993
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.11 E-value=2.6e-05 Score=60.26 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=69.2
Q ss_pred hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894 77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.+.+.-+.+.|-+++|+.+.+|+ +...+.+++..... .++..+|++||+|+.++.+....+........+.+++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 33444455678888888888876 56667777776665 557778889999997644333345666777789999999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027894 156 SALESMNVENAFTEVLTQ 173 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~ 173 (217)
|++++.++.++...+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999988766443
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=6.9e-06 Score=64.50 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=35.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcc------cceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKST------IGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
.++++|++|+|||||+|.|.+........-. .-++.....+...+. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 5899999999999999999886543211100 001222333333332 37899999643
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.09 E-value=2e-05 Score=55.37 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
.+.+.++||+|.... ...++..+|.++++..++-.+.+.-++. ..+. .--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 367899999996422 2347788999999998874443322221 1111 12378899997
No 403
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.08 E-value=1.2e-05 Score=58.60 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=60.5
Q ss_pred EEEEEeCCCchhhh-------hhhHhhhc-CC-cEEEEEEeCCC-hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 63 KAQIWDTAGQERYR-------AITSAYYR-GA-VGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~-------~~~~~~~~-~~-d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.+.++|+|||.+.. .+.++.-+ +. -++++++|..= .++...+...+..+.+...-++|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 57899999975431 11122111 11 23555555431 22223333333333332235789999999999853
Q ss_pred cccCCHHHH-------------------------------HHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 133 LCAVSTEDA-------------------------------KAFAEREN-TFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 133 ~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
.. +.+++ ..+...++ +.+++..+.+.+.++.++..|-..++-.
T Consensus 179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~ 253 (273)
T KOG1534|consen 179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYG 253 (273)
T ss_pred hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence 21 11111 11112233 3488888888888888888776665533
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=0.00012 Score=58.97 Aligned_cols=134 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCC-----------C----------CcccceeEEEEEEE------E---C-CeEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------S----------KSTIGVEFATRSIR------V---E-DKIV 62 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~-----------~----------~~~~~~~~~~~~~~------~---~-~~~~ 62 (217)
..|+++|++|+||||++..|...-.... . ....+..+....-. + . ....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 5799999999999999998864211000 0 00011111110000 0 0 0125
Q ss_pred EEEEEeCCCchhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 63 KAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
.+.|+||+|..... .-...++ ...+.+++|+|++-.. .++......+... .+-=+|+||.|-..
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~---- 391 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA---- 391 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence 78999999953221 1122222 2356788999875432 2333344444321 22356799999643
Q ss_pred CHHHHHHHHHHcCCcEEEecc
Q 027894 137 STEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..++...+.|+.+++.
T Consensus 392 k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 392 SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred CccHHHHHHHHHCcCEEEEeC
Confidence 344566667777888665553
No 405
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.99 E-value=0.00018 Score=57.87 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc---ccceeEEEE-----------------EEEE----------CCeEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---TIGVEFATR-----------------SIRV----------EDKIV 62 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~---~~~~~~~~~-----------------~~~~----------~~~~~ 62 (217)
.=-|++||++||||||-+..|...-....... ..+++.+.. .+.. .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44689999999999999888765433010001 111111100 0000 01224
Q ss_pred EEEEEeCCCchhhhhh----hHhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 63 KAQIWDTAGQERYRAI----TSAYYRG--AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
+++|+||.|...+... ...++.. ..-+.+|++++.. .+++...+..+.... .. =+++||.|-. -
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~---i~-~~I~TKlDET----~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP---ID-GLIFTKLDET----T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC---cc-eeEEEccccc----C
Confidence 7899999996443322 2333332 2345677777655 355666555554322 22 3468999953 3
Q ss_pred CHHHHHHHHHHcCCcEEEec
Q 027894 137 STEDAKAFAERENTFFMETS 156 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~S 156 (217)
+.-..-.+..+.+.|+.+++
T Consensus 353 s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe
Confidence 44555566666666654444
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00022 Score=58.31 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=73.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCc--------------------ccceeEEEEEEE-------ECCeEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKS--------------------TIGVEFATRSIR-------VEDKIV 62 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~--------------------~~~~~~~~~~~~-------~~~~~~ 62 (217)
.-.|+++|++|+||||++..|.+..... .... ..+.......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 4589999999999999999886532100 0000 001110000000 001123
Q ss_pred EEEEEeCCCchhh----hhhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 63 KAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
.+.++||+|.... ......+. ....-.++|+|++... +.+..+...+... -+-=+|+||.|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~----~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH----GIHGCIITKVDEAA---- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeeeCCC----
Confidence 6789999994332 11122221 2244578899987432 2333333333321 22356799999633
Q ss_pred CHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 137 STEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
..-.+..++...+.|+.+++. |.++
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt~--Gq~V 365 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVTN--GQKV 365 (420)
T ss_pred CccHHHHHHHHhCCCEEEEEC--CCCc
Confidence 445567777778888766654 4444
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.99 E-value=2.9e-05 Score=56.32 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=42.1
Q ss_pred EEEEEEeCCCchhhhhh-----hHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYRAI-----TSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~-----~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
....++++.|....... .....-..+.++.|+|+.+......+.. +..++.... ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence 56778888884333222 1111234688999999977544444433 334443322 7889999986533
Q ss_pred CCHHHHHHHHHH
Q 027894 136 VSTEDAKAFAER 147 (217)
Q Consensus 136 ~~~~~~~~~~~~ 147 (217)
...+...+..++
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 122444444444
No 408
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.98 E-value=1.5e-05 Score=65.44 Aligned_cols=85 Identities=16% Similarity=-0.008 Sum_probs=48.0
Q ss_pred EEEEEeCCCchhhhhhh------HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 63 KAQIWDTAGQERYRAIT------SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
.+.++||+|........ ...+..+|.+++|+|++... +.+ .....+.... ...-+|+||.|...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av-~~a~~F~~~l---~i~gvIlTKlD~~a---- 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK-NQAKAFHEAV---GIGGIIITKLDGTA---- 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH-HHHHHHHhcC---CCCEEEEecccCCC----
Confidence 78999999954322111 11234578899999987653 222 2222332111 12356789999632
Q ss_pred CHHHHHHHHHHcCCcEEEecc
Q 027894 137 STEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..+....+.|+.+++.
T Consensus 247 ~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred cccHHHHHHHHHCcCEEEEec
Confidence 234455666666777655554
No 409
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.98 E-value=0.00017 Score=57.10 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCChhhHHH-H-HHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 62 VKAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHVTFEN-V-ERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~-~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+...++++.|...-......+. -..|+++-|+|+..-..... + +.+..++.... +|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence 4567888888433222222221 23578999999876544222 2 33344444322 8899999997
Q ss_pred CcccCCHHHHHHHHHHc--CCcEEEecc
Q 027894 132 HLCAVSTEDAKAFAERE--NTFFMETSA 157 (217)
Q Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa 157 (217)
+... .+..+....+. .++++.++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 6432 34445555544 366887776
No 410
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.97 E-value=3e-05 Score=55.62 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=64.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDT-AGQ--------------------- 72 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~--------------------- 72 (217)
||++.|++|+|||||+++++........ +. ..+....+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG-GE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC-cc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998765421111 11 1223333333444444555555 220
Q ss_pred -hhhhhh----hHhhhcCCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCC-CCCCcccCCHHHHHHHH
Q 027894 73 -ERYRAI----TSAYYRGAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKA-DLRHLCAVSTEDAKAFA 145 (217)
Q Consensus 73 -~~~~~~----~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~~ 145 (217)
+.+... ....+..+| ++|+|=--+ ++ ....|...+......+.|++.++-+. +. ....++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 111111 111124555 667763211 11 01233334443333678888887766 32 1255556
Q ss_pred HHcCCcEEEeccCCCCCH
Q 027894 146 ERENTFFMETSALESMNV 163 (217)
Q Consensus 146 ~~~~~~~~~~Sa~~~~~v 163 (217)
...++.+++++..+...+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 667788888877654443
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.96 E-value=9.5e-05 Score=60.75 Aligned_cols=86 Identities=16% Similarity=0.012 Sum_probs=47.4
Q ss_pred EEEEEEeCCCchhh----hhhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
+.+.++||+|.... ......+ .-..+.+++|+|..... ++......+.... + ..-+|+||.|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~--- 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDA--- 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 57899999994321 1111111 12567789999986542 2222233333211 1 2356789999632
Q ss_pred CCHHHHHHHHHHcCCcEEEecc
Q 027894 136 VSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+.......+.|+.+++.
T Consensus 255 -rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 -RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred -cccHHHHHHHHHCcCEEEEeC
Confidence 223366666677888666554
No 412
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00022 Score=57.28 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC-----------CCC----------cccceeEEEEEEE--E-------C-CeE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL-----------ESK----------STIGVEFATRSIR--V-------E-DKI 61 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~-----------~~~----------~~~~~~~~~~~~~--~-------~-~~~ 61 (217)
.--|+++|++|+||||++..+....... ... ...+..+....-. + . ...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 4568999999999999999876421100 000 0011111110000 0 0 013
Q ss_pred EEEEEEeCCCchhhh----hhhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYR----AITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
..+.++||+|..... .....+.. ..+.+++|.++.. ...++...+..+.. -.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 578999999963221 11222222 3466677776532 23334343333321 123356799999642
Q ss_pred CCHHHHHHHHHHcCCcEEEecc
Q 027894 136 VSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..++...+.|+.+++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec
Confidence 445566777778888766664
No 413
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.4e-05 Score=62.28 Aligned_cols=155 Identities=20% Similarity=0.162 Sum_probs=93.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc-------------------CCC------------CCCcccceeEEEEEEEECC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE-------------------FSL------------ESKSTIGVEFATRSIRVED 59 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~-------------------~~~------------~~~~~~~~~~~~~~~~~~~ 59 (217)
-..+++.++|+..+||||+-..++... ... .....-+.......+..+.
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 346899999999999999876653310 000 0011112223333333333
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHH--HHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVE--RWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~--~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
.++++.|+||+..|-.....-..++|..++|+++...+ .|+.-- +-...+.... .-...|+++||+|-+..+
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTVN 233 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCccC
Confidence 57899999999999888877888899999999875422 122111 1112222111 345678889999975322
Q ss_pred cC--C----HHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q 027894 135 AV--S----TEDAKAFAEREN------TFFMETSALESMNVENAFT 168 (217)
Q Consensus 135 ~~--~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~ 168 (217)
+. . .+....|....+ ..++++|..+|.++++...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 1 123334444322 4599999999999888664
No 414
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=9.2e-05 Score=42.38 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=31.5
Q ss_pred hhcCCcEEEEEEeCCC--hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 82 YYRGAVGALLVYDVTR--HVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
..+-.++++|++|++. +.++++-..++..+.... .+.|+++|.||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3345788999999996 446666677778887766 6899999999998
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.87 E-value=0.00049 Score=54.54 Aligned_cols=95 Identities=9% Similarity=0.066 Sum_probs=50.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
....++++.|..........++. ..+.++.|+|+.+..... .......++.... +|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence 45678899996544333333321 247899999987533211 1112223343222 78899999865
Q ss_pred cccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHH
Q 027894 133 LCAVSTEDAKAFAERE--NTFFMETSALESMNVENAF 167 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~ 167 (217)
+ .+...+..+.. .++++.++ ........+|
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 3 23455555443 35566544 2233444444
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.87 E-value=0.00017 Score=59.26 Aligned_cols=86 Identities=17% Similarity=0.010 Sum_probs=49.0
Q ss_pred EEEEEEeCCCchhhh----hhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYR----AITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
+.+.++||+|..... ..... ..-..+.+++|+|+.... +.......+.... ...-+|+||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence 568999999943221 11111 123578889999987543 3333333333211 12356799999632
Q ss_pred CCHHHHHHHHHHcCCcEEEecc
Q 027894 136 VSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..++...++|+.+++.
T Consensus 254 -~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 -RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred -cccHHHHHHHHHCcCEEEEeC
Confidence 223366667777888666654
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=0.00048 Score=56.75 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=49.5
Q ss_pred EEEEEEeCCCchhhh----hhhHhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 62 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
..+.++||+|..... .....++. ...-+++|++.+-. ..++......+... + +--+++||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 578999999953221 12222333 23466788887543 23344443444321 1 2357799999643
Q ss_pred cCCHHHHHHHHHHcCCcEEEecc
Q 027894 135 AVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
....+..+....+.|+.+++.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEeC
Confidence 334577777778888766654
No 418
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00053 Score=57.06 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCC-C--Cccc--------------------ceeEEEEEEE-------ECCeEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE-S--KSTI--------------------GVEFATRSIR-------VEDKIVK 63 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~-~--~~~~--------------------~~~~~~~~~~-------~~~~~~~ 63 (217)
--++++|++|+||||++..|........ . .... +.......-. ..-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 3589999999999999998875321110 0 0000 0000000000 0001235
Q ss_pred EEEEeCCCchhhhh---hhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC
Q 027894 64 AQIWDTAGQERYRA---ITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 64 ~~l~Dt~G~~~~~~---~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~ 137 (217)
+.++||+|...... .....+.. ..-.++|+|.+... ..+......+.. ....-+|+||.|-. ..
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet----~~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEA----AS 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCc----cc
Confidence 78999999432211 11112221 22367888886442 223333333322 22345678999953 24
Q ss_pred HHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 138 TEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
.-.+..+....+.|+.+++. |++|
T Consensus 407 ~G~~l~i~~~~~lPI~yvt~--GQ~V 430 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVSN--GQRV 430 (484)
T ss_pred chHHHHHHHHHCCCeEEEec--CCCC
Confidence 45667777778888766654 4455
No 419
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.83 E-value=8.1e-05 Score=51.71 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=61.3
Q ss_pred EEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC
Q 027894 17 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT 96 (217)
Q Consensus 17 ~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 96 (217)
..-|..|+|||++--.+...-..... .+.-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~-~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGK-RVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 34578899999996655432111000 00000000 0001111678999999853 233456788899999999875
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 97 RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 97 ~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
..++..+...+..+.... ...++.+|+|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 444555555555554333 345678899999853
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.81 E-value=2.4e-05 Score=60.30 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=40.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----CCcccceeEEEEE-EEECCeEEEEEEEeCCCc
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----SKSTIGVEFATRS-IRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~ 72 (217)
....++++|+|.||+|||||||++........ .....|.+..+.. +.+... -.+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 34679999999999999999998766433221 1223334443433 334333 23789999993
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00049 Score=60.09 Aligned_cols=140 Identities=17% Similarity=0.140 Sum_probs=72.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCC---CCc--------------------ccceeEEEEEEE-------ECCeEEEE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLE---SKS--------------------TIGVEFATRSIR-------VEDKIVKA 64 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~---~~~--------------------~~~~~~~~~~~~-------~~~~~~~~ 64 (217)
-|+++|++|+||||++..|........ ... ..+..+....-. -......+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 579999999999999998876431100 000 001111000000 00112468
Q ss_pred EEEeCCCchhh----hhhhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH
Q 027894 65 QIWDTAGQERY----RAITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST 138 (217)
Q Consensus 65 ~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~ 138 (217)
.|+||+|.... ......+ ....+-+++|+|.+.. .+.+......+......+ +-=+|+||.|-.. ..
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~----~~ 339 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-VDGCIITKLDEAT----HL 339 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-CCEEEEeccCCCC----Cc
Confidence 99999993221 1111111 1234567899998753 223333333332211011 2356799999643 34
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 139 EDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
-.+..+....+.|+.+++. |++|
T Consensus 340 G~iL~i~~~~~lPI~yit~--GQ~V 362 (767)
T PRK14723 340 GPALDTVIRHRLPVHYVST--GQKV 362 (767)
T ss_pred cHHHHHHHHHCCCeEEEec--CCCC
Confidence 5566677777888766654 4555
No 422
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00093 Score=54.27 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=74.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCC-----CC--------------------CcccceeEEEEEEE-------ECCe
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSL-----ES--------------------KSTIGVEFATRSIR-------VEDK 60 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~-----~~--------------------~~~~~~~~~~~~~~-------~~~~ 60 (217)
.-.|+++|++|+||||.+..|...-... .. ....+..+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3578999999999999998876421100 00 00011111111000 0012
Q ss_pred EEEEEEEeCCCchhhh----hhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 61 IVKAQIWDTAGQERYR----AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
...+.++||+|..... .-...++.. ..-.++|+|++... .++...+..+... .+-=+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 3578999999953221 111222222 22578999998763 3344444444321 13356799999633
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 134 CAVSTEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
..-.+..++...+.|+..++. |.++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit~--Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVTD--GQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEeC--CCCC
Confidence 445566667777888665553 4444
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00028 Score=57.49 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc-CCCCC---------------------CcccceeEEEEE-E-----EECCeEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE-FSLES---------------------KSTIGVEFATRS-I-----RVEDKIVKAQ 65 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~-~~~~~---------------------~~~~~~~~~~~~-~-----~~~~~~~~~~ 65 (217)
.-|+++|++||||||++..|.... ..... ....+....... . .......++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886522 10000 001111111100 0 0011235789
Q ss_pred EEeCCCchhh----hhhhHhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 66 IWDTAGQERY----RAITSAYYR-----GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 66 l~Dt~G~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
++||+|.... ...+..++. ...-.++|+|++... +++......+... -+-=+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence 9999995321 111222222 234578899987654 2233333333221 22356799999632
Q ss_pred CHHHHHHHHHHcCCcEEEecc
Q 027894 137 STEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..++...+.|+.+++.
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CccHHHHHHHHHCCCEEEEec
Confidence 334466667777888665554
No 424
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.76 E-value=0.00027 Score=46.34 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=49.9
Q ss_pred EEEEc-CCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 16 VVLIG-DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 16 I~vvG-~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
|++.| ..|+||||+...+...-... ..+ ...+..+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-GKR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-CCc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 56899999987765433211 101 111212211 668999999864332 2356777999999987
Q ss_pred CCChhhHHHHHHHHH
Q 027894 95 VTRHVTFENVERWLK 109 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (217)
. +..++..+..+++
T Consensus 71 ~-~~~s~~~~~~~~~ 84 (104)
T cd02042 71 P-SPLDLDGLEKLLE 84 (104)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 4555666666554
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00054 Score=52.91 Aligned_cols=134 Identities=17% Similarity=0.143 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCC---------------------CCcccceeEEEEEEE---------E-CCeEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------------SKSTIGVEFATRSIR---------V-EDKIV 62 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~---------~-~~~~~ 62 (217)
-+|+++|++|+||||++..+........ +....++.+....-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 5899999999999999987755311000 000111111110000 0 01136
Q ss_pred EEEEEeCCCchhhh----hhhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC
Q 027894 63 KAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV 136 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~ 136 (217)
.+.++||+|..... ..+..++ ...+-+++|+|++... +++..+...+.. -.+--+++||.|-..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence 78999999954211 1111222 2456789999986432 223334344432 122356799999643
Q ss_pred CHHHHHHHHHHcCCcEEEecc
Q 027894 137 STEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..-.+..++...+.|+..++.
T Consensus 226 ~~G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 226 SSGELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred CccHHHHHHHHHCcCEEEEeC
Confidence 334556666677887665553
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.71 E-value=0.0004 Score=44.48 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=45.2
Q ss_pred EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEe
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD 94 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d 94 (217)
|++.|..|+||||+...+...-..... . . ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK-R-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-e-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887665422111 1 1 1112 5899999986432221 2445667898999988
Q ss_pred CCChh
Q 027894 95 VTRHV 99 (217)
Q Consensus 95 ~~~~~ 99 (217)
.....
T Consensus 68 ~~~~~ 72 (99)
T cd01983 68 PEALA 72 (99)
T ss_pred Cchhh
Confidence 76543
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.65 E-value=0.00058 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.-.+++.|++|+|||+|++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999987654
No 428
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.65 E-value=0.0047 Score=43.95 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=100.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+..+...|++||..+.++..|..++...... ....+.... . .-.|.. ... .=...|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~Vh~a~--s-------LPLp~e--~~~----lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLKVHLAK--S-------LPLPSE--NNN----LRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEEEEEec--c-------CCCccc--ccC----CCceeEE
Confidence 4556889999999999999999999863321 111111110 0 001111 111 1245899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
|+|++|.....|++.++.-+..+....-.++-++ +.+-....+...+...+..+++..+++|++.+.-...++...+-+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCf-l~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCF-LATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhccceEE-EEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 9999999999999999888887765553444444 455555555567889999999999999999999988888777777
Q ss_pred HHHHHHHHHh
Q 027894 169 EVLTQIYHVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
.+++.+...-
T Consensus 147 RLL~~lqi~a 156 (176)
T PF11111_consen 147 RLLRMLQICA 156 (176)
T ss_pred HHHHHHHHHc
Confidence 7777666443
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.62 E-value=0.00036 Score=46.04 Aligned_cols=99 Identities=20% Similarity=0.151 Sum_probs=57.5
Q ss_pred cCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh
Q 027894 20 GDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV 99 (217)
Q Consensus 20 G~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 99 (217)
+..|+||||+...|...-.......+.-.+ ...... -.+.++|+|+.... .....+..+|.++++++. +..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChH
Confidence 456799999877664432211010111010 000000 16899999986433 234467889999988875 455
Q ss_pred hHHHHHHHHHHHhccCCC-CCcEEEEEeC
Q 027894 100 TFENVERWLKELRGHTDS-NIVIMLVGNK 127 (217)
Q Consensus 100 s~~~~~~~~~~l~~~~~~-~~p~iiv~nK 127 (217)
++..+..++..+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 567777777777665433 4566777775
No 430
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.62 E-value=0.0008 Score=48.72 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEE--EEEeCC-CchhhhhhhHhhhcCCcEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKA--QIWDTA-GQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~-G~~~~~~~~~~~~~~~d~ii 90 (217)
=.++++|++|+|||||++.+.+-..+.. |. +.+++..+-+ +-.+.+ |+.+...+...++.+.++++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNG-----DN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCC-----cE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3689999999999999999887543211 11 1112211111 111133 34444566677777776444
Q ss_pred EEEeCC----ChhhHHHHHHHHHHHh
Q 027894 91 LVYDVT----RHVTFENVERWLKELR 112 (217)
Q Consensus 91 ~v~d~~----~~~s~~~~~~~~~~l~ 112 (217)
+ |-. |+.+.+.+..++..+.
T Consensus 95 L--DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 F--DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred E--ECCcccCCHHHHHHHHHHHHHHH
Confidence 3 432 4444455555555543
No 431
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0003 Score=57.80 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=81.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc------------CCCCCC--cccceeEEEEEEEE----------------CCe
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE------------FSLESK--STIGVEFATRSIRV----------------EDK 60 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~------------~~~~~~--~~~~~~~~~~~~~~----------------~~~ 60 (217)
.+.-++.++.+...|||||-..|.... |..... ..-+++.....+.. ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 345578899999999999999886531 111000 00112222222211 234
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC-CcccCCHH
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR-HLCAVSTE 139 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-~~~~~~~~ 139 (217)
.+.+.++|.||+-.|.+-..+.++-.|+++.|+|..+.--.+.--.+.+.+.. .+.-++++||.|.. -+.+...+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHH
Confidence 57889999999999998888899999999999998775433332233344432 23346789999974 23455555
Q ss_pred HHHHHH
Q 027894 140 DAKAFA 145 (217)
Q Consensus 140 ~~~~~~ 145 (217)
++-+..
T Consensus 173 eLyqtf 178 (842)
T KOG0469|consen 173 ELYQTF 178 (842)
T ss_pred HHHHHH
Confidence 544433
No 432
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00017 Score=54.70 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-++++|+.|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999884
No 433
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=0.00058 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998754
No 434
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.55 E-value=0.0021 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999864
No 435
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=7.7e-05 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999774
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.51 E-value=8.6e-05 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
||+|+|++|||||||.+.|....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999987653
No 437
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00039 Score=55.34 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=51.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC---------------------cccceeEEEEEEEE-------------C
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK---------------------STIGVEFATRSIRV-------------E 58 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~ 58 (217)
.--|+++|-.|+||||.+-.|........+. .-.++.++...... .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 3457999999999999988764421111100 00112222211111 1
Q ss_pred CeEEEEEEEeCCCchhhh-hhh-----HhhhcCCcEEEEEEeCCChhhHHHH
Q 027894 59 DKIVKAQIWDTAGQERYR-AIT-----SAYYRGAVGALLVYDVTRHVTFENV 104 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~-~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~ 104 (217)
...+.++++||+|..... ++- ..-.-..|-+|+|.|++-..+-+..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 234689999999942211 111 1112357899999999987654443
No 438
>PRK07261 topology modulation protein; Provisional
Probab=97.49 E-value=9.5e-05 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 439
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.48 E-value=0.00092 Score=51.95 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------------
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------------- 72 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 72 (217)
.......++++|++|.|||+++++|....... .... . ..+.+..+.+|..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34445679999999999999999999866322 2111 0 1123445555431
Q ss_pred --------hhhhhhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCC
Q 027894 73 --------ERYRAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129 (217)
Q Consensus 73 --------~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D 129 (217)
..........++...+=++++|--. ..+......+++.+....+ -++|+|.||+.--
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 1112223455677777788888532 2233334445555554443 5799999987643
No 440
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.47 E-value=9.6e-05 Score=55.76 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=28.2
Q ss_pred ccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 2 AAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 2 ~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
+++...+--...+|++|+|++|||||+|+..++..
T Consensus 2 ~~F~~~~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 2 KRFDRNSLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCChhHhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 44555555667799999999999999999998764
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.45 E-value=0.00018 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
..+|.|+.|+|||||+.++.---+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999998765443
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.41 E-value=0.00012 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.741 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
|+++|++|||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 443
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.41 E-value=0.0021 Score=46.54 Aligned_cols=85 Identities=26% Similarity=0.232 Sum_probs=59.8
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE 139 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 139 (217)
..+.+.++|||+.... .....+..+|.+++++..+. .+...+..++..+... +.|+.+|+|+.|... ....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 3468899999975322 23445688999999999874 4566676766666543 467889999999643 2345
Q ss_pred HHHHHHHHcCCcEE
Q 027894 140 DAKAFAERENTFFM 153 (217)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (217)
+..++++..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 67777888888765
No 444
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00014 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.728 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999887
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.00094 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-|++.|+.|+|||||++.+....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998864
No 446
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.00021 Score=43.19 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|++.|++|+||||+.+.|...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987753
No 447
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.35 E-value=0.0023 Score=53.32 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=41.8
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
.+|+|=|+-+..-.++.+.+...+..+.. ...|+|++++-+-..........-..++....++..+....-...-+...
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~ 275 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF 275 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence 35778787664444333333333332222 56888888877665322212222233333445555555555444444444
Q ss_pred HHHHHH
Q 027894 167 FTEVLT 172 (217)
Q Consensus 167 ~~~i~~ 172 (217)
+..|+.
T Consensus 276 L~ric~ 281 (634)
T KOG1970|consen 276 LKRICR 281 (634)
T ss_pred HHHHHH
Confidence 444443
No 448
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.31 E-value=0.0082 Score=43.21 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=51.6
Q ss_pred EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH
Q 027894 63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK 142 (217)
Q Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 142 (217)
.+.++|+|+.... .....+..+|.++++++.+. .++..+..++..+... ......+|+|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 6899999985433 23345678999999998764 3455566666666542 22346788999986431 1222234
Q ss_pred HHHHHcCCcEE
Q 027894 143 AFAERENTFFM 153 (217)
Q Consensus 143 ~~~~~~~~~~~ 153 (217)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44455666654
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.31 E-value=0.00014 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.31 E-value=0.0034 Score=43.83 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999998864
No 451
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.29 E-value=0.00047 Score=51.23 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.....-|+|+|++|||||||++.|....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3345668899999999999999997643
No 452
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00029 Score=52.95 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhhCcC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
|+++|++|||||||++-+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999998877543
No 453
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.26 E-value=0.0003 Score=52.50 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
-|+++|++|||||||++-+-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 379999999999999998866443
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.26 E-value=0.00025 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999888754
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00033 Score=51.59 Aligned_cols=24 Identities=50% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|++|||||||++.+.+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 579999999999999998876543
No 456
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.23 E-value=0.0023 Score=46.60 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
=|+++|++||||+||++.|....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 37999999999999999998874
No 457
>PRK10646 ADP-binding protein; Provisional
Probab=97.23 E-value=0.0031 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-|++-|.-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38899999999999999997754
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.22 E-value=0.0003 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+|+|+.|+|||||++.|++.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 459
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.22 E-value=0.0033 Score=47.04 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=64.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 139 (217)
+.+.|+|+.|..... ....+..+|.+|+=.-.+.-+.-+. .-.|+..+.....+++|.-|+.|+..... ......
T Consensus 84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence 578999999864433 3335567998888666664332222 23344444444457899999999987431 111112
Q ss_pred HHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 140 DAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 140 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
...++.. ++|++.+.......+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2233333 58999999988888777776
No 460
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0013 Score=47.30 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=44.6
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC-----CcccCCHHHHHHHHHHcCCcEE--EeccCCC
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR-----HLCAVSTEDAKAFAERENTFFM--ETSALES 160 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~ 160 (217)
+-+-|.-.+..+..+..+.++..+-. ..|.|.- ...+....-++.++.+..+.+| ++||.+.
T Consensus 117 aPvhVLg~~k~ea~e~Ae~~L~kVGi-----------~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDP 185 (256)
T COG4598 117 APVHVLGVSKAEAIERAEKYLAKVGI-----------AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185 (256)
T ss_pred cchHhhcCCHHHHHHHHHHHHHHhCc-----------hhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCH
Confidence 34445555555555555555555432 3344421 1111122233344444444444 5899999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 027894 161 MNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~~ 179 (217)
+-+.|++.-|.+...+-+.
T Consensus 186 ElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 186 ELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred HHHHHHHHHHHHHHHhCCe
Confidence 9999999888877765543
No 461
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.21 E-value=0.00011 Score=58.43 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.+-|.++|.|++||||+||.|-...+.... +..|-+..-..+..-. ++.++|+||
T Consensus 307 qISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 307 QISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred ceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCC
No 462
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.21 E-value=0.00073 Score=50.31 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=35.8
Q ss_pred EEEEEEeCCCchhhh----hh--hHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 62 VKAQIWDTAGQERYR----AI--TSAYYRGAVGALLVYDVT------RHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~--~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
-.+.++|+|||-++. .+ ....+..-+.-+.++.+. +|..|-. .++..+.....-+.|-|=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 467899999964321 11 122233355444444443 4555433 222222222224677788899999
Q ss_pred CC
Q 027894 130 LR 131 (217)
Q Consensus 130 ~~ 131 (217)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 84
No 463
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.20 E-value=0.0025 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
=+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999988765
No 464
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0002 Score=51.38 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.-+++.|++|+|||||++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999998876
No 465
>PRK06217 hypothetical protein; Validated
Probab=97.16 E-value=0.00038 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.16 E-value=0.00034 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|+|.|.+||||||+.+.|....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999987753
No 467
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.15 E-value=0.00038 Score=48.21 Aligned_cols=21 Identities=57% Similarity=0.858 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 468
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.15 E-value=0.0026 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|+|+|++||||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887754
No 469
>PRK01889 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00056 Score=55.13 Aligned_cols=25 Identities=44% Similarity=0.674 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999987543
No 470
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.13 E-value=0.0011 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-|++-|+-|+|||||++.+...-
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999987754
No 471
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.13 E-value=0.00046 Score=47.19 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL 40 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~ 40 (217)
-.++++|++|+||||+++.+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998876544
No 472
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.10 E-value=0.013 Score=43.80 Aligned_cols=62 Identities=26% Similarity=0.209 Sum_probs=37.0
Q ss_pred EEEEEeC-CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCC
Q 027894 63 KAQIWDT-AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADL 130 (217)
Q Consensus 63 ~~~l~Dt-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~ 130 (217)
.+.++|| +|.+ ++-+...+.+|.++.|+|.+-. |+...++........ .-.++.+|+||.|-
T Consensus 135 e~VivDtEAGiE---HfgRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el--g~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIE---HFGRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL--GIKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchh---hhccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh--CCceEEEEEeeccc
Confidence 3455555 2333 2334456789999999998654 354444433322221 13779999999994
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.10 E-value=0.00047 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996653
No 474
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.08 E-value=0.00032 Score=60.62 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=73.1
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce---------------------------------------
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV--------------------------------------- 48 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~--------------------------------------- 48 (217)
...-....|+++|..++||||.++.+.+..+.+....-.+-
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 34456789999999999999999999996654432111000
Q ss_pred --------------eEEEEEEEE-CCeEEEEEEEeCCC-------------chhhhhhhHhhhcCCcEEEEEEeCCChhh
Q 027894 49 --------------EFATRSIRV-EDKIVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDVTRHVT 100 (217)
Q Consensus 49 --------------~~~~~~~~~-~~~~~~~~l~Dt~G-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (217)
......+.+ ......++++|+|| ......+...|+.....+|+.+...+.+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d- 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD- 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence 000001111 11124678899999 1345667778888888888888776522
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 101 FENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+. ...++....+....+...+.|++|.|+.
T Consensus 183 ~a-ts~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 183 IA-TSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hh-cCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 11 1233444444444556667777777763
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.07 E-value=0.00051 Score=45.16 Aligned_cols=20 Identities=40% Similarity=0.737 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 027894 15 KVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~ 34 (217)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999875
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.06 E-value=0.00051 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999987753
No 477
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.05 E-value=0.0036 Score=43.45 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
-|++-|+-|+|||||.+.+...--
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 478999999999999999877654
No 478
>PRK04195 replication factor C large subunit; Provisional
Probab=97.05 E-value=0.019 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.-.+++.|++|+||||+++.+.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999997753
No 479
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.05 E-value=0.011 Score=46.28 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 027894 15 KVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~ 34 (217)
.|++.|.+||||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999984
No 480
>PRK14530 adenylate kinase; Provisional
Probab=97.05 E-value=0.00055 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.+|+|+|++||||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988653
No 481
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.03 E-value=0.00061 Score=49.28 Aligned_cols=21 Identities=43% Similarity=0.468 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~ 34 (217)
-.++++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999875
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.02 E-value=0.00082 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998775
No 483
>PRK03839 putative kinase; Provisional
Probab=97.02 E-value=0.00062 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
+|+++|.+||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998775
No 484
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.02 E-value=0.00086 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...-|+++|++|||||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999874
No 485
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0025 Score=51.72 Aligned_cols=63 Identities=22% Similarity=0.088 Sum_probs=36.4
Q ss_pred EEEEEEeCCCchhhhhhh------HhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 62 VKAQIWDTAGQERYRAIT------SAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+.+.++||+|.-...... ..-.-+.|=+++|+|+.-...-... +.+...+. + .=+|+||.|-.
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~------i-tGvIlTKlDGd 252 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG------I-TGVILTKLDGD 252 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC------C-ceEEEEcccCC
Confidence 478999999943222111 1123467889999999876543322 33333321 1 23568888863
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.01 E-value=0.00065 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.++++|++|||||||++.+++..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988743
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.01 E-value=0.00059 Score=49.44 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-|+++|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998853
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.00 E-value=0.0006 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|++.|++|||||||++.|.+.-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987753
No 489
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.99 E-value=0.0006 Score=52.00 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
++++|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999774
No 490
>PRK13949 shikimate kinase; Provisional
Probab=96.99 E-value=0.00072 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
+|+++|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988764
No 491
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.00089 Score=48.90 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348999999999999999998753
No 492
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.97 E-value=0.00092 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
..-+.|+|.+|||||||+++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 3468999999999999999998754
No 493
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.94 E-value=0.0008 Score=48.36 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
=.++++|++|+|||||+|-+.+=..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3689999999999999998876443
No 494
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00071 Score=50.49 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
.|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999877
No 495
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.93 E-value=0.00073 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.-|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 496
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.93 E-value=0.00071 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|++.|++|||||||++.|.+.-
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999887643
No 497
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0042 Score=51.85 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
=||+++|.+||||||+++.|+.
T Consensus 379 ekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.91 E-value=0.00083 Score=50.29 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998854
No 499
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.91 E-value=0.00085 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+++|++|+|||+|++.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887654
No 500
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.91 E-value=0.0076 Score=49.68 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=37.5
Q ss_pred EEeCC-CchhhhhhhHhhhcCCcEEEEEEeC-CChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 66 IWDTA-GQERYRAITSAYYRGAVGALLVYDV-TRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 66 l~Dt~-G~~~~~~~~~~~~~~~d~ii~v~d~-~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
+.|.+ |..+.-.....++++++.+| +|- +..=+..+++.++..+......+.-+|++-.|.+
T Consensus 138 V~dLsVG~qQRVEIlKaLyr~a~iLI--LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 138 VADLSVGEQQRVEILKALYRGARLLI--LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred eecCCcchhHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 44433 33444566777788888444 342 2223455666777666666657788888877765
Done!