Query 027894
Match_columns 217
No_of_seqs 151 out of 1792
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.8E-44 1.6E-48 266.2 19.1 170 9-178 9-178 (216)
2 3cpj_B GTP-binding protein YPT 100.0 1.4E-38 4.7E-43 238.6 18.8 215 1-215 1-223 (223)
3 2bov_A RAla, RAS-related prote 100.0 7.2E-37 2.5E-41 226.2 22.8 196 9-217 10-206 (206)
4 2bcg_Y Protein YP2, GTP-bindin 100.0 7.4E-37 2.5E-41 226.3 22.4 176 9-184 4-179 (206)
5 2bme_A RAB4A, RAS-related prot 100.0 2.8E-35 9.4E-40 214.3 23.7 178 6-183 3-180 (186)
6 3tkl_A RAS-related protein RAB 100.0 6.2E-35 2.1E-39 214.1 24.6 175 7-181 10-184 (196)
7 2ew1_A RAS-related protein RAB 100.0 3.1E-35 1.1E-39 216.9 23.1 173 7-179 20-192 (201)
8 2hup_A RAS-related protein RAB 100.0 3.5E-35 1.2E-39 216.7 22.4 173 6-178 22-195 (201)
9 2fu5_C RAS-related protein RAB 100.0 1E-35 3.4E-40 216.2 19.0 173 9-181 4-176 (183)
10 1z0f_A RAB14, member RAS oncog 100.0 5.5E-35 1.9E-39 211.2 22.7 173 4-176 6-178 (179)
11 2a5j_A RAS-related protein RAB 100.0 5.8E-35 2E-39 213.8 23.0 174 7-180 15-188 (191)
12 2gf9_A RAS-related protein RAB 100.0 1.1E-34 3.7E-39 211.9 23.6 173 6-178 15-187 (189)
13 1zbd_A Rabphilin-3A; G protein 100.0 1.6E-34 5.3E-39 213.3 24.2 174 8-181 3-176 (203)
14 2oil_A CATX-8, RAS-related pro 100.0 1.7E-34 5.7E-39 211.6 24.0 173 7-179 19-191 (193)
15 3tw8_B RAS-related protein RAB 100.0 1.2E-34 4.1E-39 209.8 22.4 173 8-181 4-176 (181)
16 2o52_A RAS-related protein RAB 100.0 6.2E-35 2.1E-39 215.2 20.7 176 8-183 20-195 (200)
17 3kkq_A RAS-related protein M-R 100.0 1.6E-34 5.4E-39 209.8 21.9 172 4-176 9-182 (183)
18 1vg8_A RAS-related protein RAB 100.0 6.4E-35 2.2E-39 215.9 19.3 171 10-181 5-180 (207)
19 2efe_B Small GTP-binding prote 100.0 2.7E-34 9.2E-39 208.1 22.1 171 8-178 7-177 (181)
20 3dz8_A RAS-related protein RAB 100.0 1.9E-35 6.4E-40 216.4 15.7 173 7-179 17-189 (191)
21 2il1_A RAB12; G-protein, GDP, 100.0 2.1E-34 7.1E-39 211.1 20.9 170 7-176 20-190 (192)
22 1z08_A RAS-related protein RAB 100.0 1.3E-34 4.3E-39 207.7 18.7 166 10-175 3-168 (170)
23 1r2q_A RAS-related protein RAB 100.0 5E-34 1.7E-38 204.4 21.6 164 11-174 4-167 (170)
24 1z0j_A RAB-22, RAS-related pro 100.0 1E-33 3.6E-38 202.8 23.2 165 10-174 3-167 (170)
25 2fg5_A RAB-22B, RAS-related pr 100.0 2.4E-34 8.3E-39 210.7 19.9 170 7-176 17-186 (192)
26 2g6b_A RAS-related protein RAB 100.0 7.4E-34 2.5E-38 205.6 22.2 172 7-178 4-176 (180)
27 1g16_A RAS-related protein SEC 100.0 2.6E-34 9.1E-39 205.9 19.5 166 12-178 2-167 (170)
28 3cph_A RAS-related protein SEC 100.0 9.4E-34 3.2E-38 210.5 23.0 177 5-182 12-188 (213)
29 3bc1_A RAS-related protein RAB 100.0 1.5E-33 5.1E-38 206.2 23.6 175 7-181 5-190 (195)
30 2f7s_A C25KG, RAS-related prot 100.0 4.2E-34 1.4E-38 213.2 20.8 175 7-181 19-204 (217)
31 1ek0_A Protein (GTP-binding pr 100.0 8.5E-34 2.9E-38 203.2 21.3 163 12-174 2-167 (170)
32 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-33 6.3E-38 205.0 23.3 170 11-182 2-172 (189)
33 2y8e_A RAB-protein 6, GH09086P 100.0 5E-34 1.7E-38 206.1 19.7 166 11-176 12-177 (179)
34 3cbq_A GTP-binding protein REM 100.0 4.6E-34 1.6E-38 209.8 19.6 172 7-178 17-190 (195)
35 2nzj_A GTP-binding protein REM 100.0 1.4E-33 4.8E-38 203.2 21.7 169 11-180 2-173 (175)
36 3t5g_A GTP-binding protein RHE 100.0 7.3E-34 2.5E-38 206.0 20.3 167 11-178 4-171 (181)
37 2gf0_A GTP-binding protein DI- 100.0 2.5E-34 8.5E-39 211.4 17.8 165 10-176 5-171 (199)
38 1z2a_A RAS-related protein RAB 100.0 5.5E-34 1.9E-38 203.9 19.1 165 11-176 3-167 (168)
39 1z06_A RAS-related protein RAB 100.0 1.4E-33 4.8E-38 206.0 21.5 168 9-176 16-188 (189)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.9E-33 1.3E-37 201.3 22.7 167 9-176 3-174 (177)
41 2fn4_A P23, RAS-related protei 100.0 2.7E-33 9.3E-38 202.6 21.9 169 9-178 5-174 (181)
42 3q85_A GTP-binding protein REM 100.0 1.1E-33 3.7E-38 202.7 19.6 165 13-177 2-168 (169)
43 1x3s_A RAS-related protein RAB 100.0 6.3E-33 2.2E-37 203.2 23.3 170 8-178 10-180 (195)
44 3q3j_B RHO-related GTP-binding 100.0 1E-33 3.5E-38 210.8 18.6 171 6-178 20-205 (214)
45 2hxs_A RAB-26, RAS-related pro 100.0 5.8E-34 2E-38 205.8 16.6 167 11-177 4-174 (178)
46 2p5s_A RAS and EF-hand domain 100.0 1.4E-33 4.9E-38 207.7 18.9 167 9-175 24-196 (199)
47 3ihw_A Centg3; RAS, centaurin, 100.0 9.3E-33 3.2E-37 201.0 22.6 165 8-179 15-183 (184)
48 3oes_A GTPase rhebl1; small GT 100.0 1.1E-33 3.9E-38 208.5 17.7 169 9-178 20-189 (201)
49 3q72_A GTP-binding protein RAD 100.0 4.2E-33 1.4E-37 199.1 20.0 163 13-177 2-165 (166)
50 3clv_A RAB5 protein, putative; 100.0 1.3E-32 4.4E-37 202.9 23.2 166 10-178 4-206 (208)
51 3reg_A RHO-like small GTPase; 100.0 5.2E-33 1.8E-37 203.8 20.8 168 8-177 18-189 (194)
52 3c5c_A RAS-like protein 12; GD 100.0 2.4E-33 8.3E-38 204.6 18.5 165 9-175 17-185 (187)
53 1u8z_A RAS-related protein RAL 100.0 8.6E-33 2.9E-37 197.5 20.3 163 12-175 3-166 (168)
54 2q3h_A RAS homolog gene family 100.0 7.3E-33 2.5E-37 204.1 20.4 172 7-180 14-199 (201)
55 1ky3_A GTP-binding protein YPT 100.0 3.5E-33 1.2E-37 202.2 18.4 169 10-178 5-180 (182)
56 2a9k_A RAS-related protein RAL 100.0 1.4E-32 5E-37 199.8 21.6 169 9-178 14-183 (187)
57 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-32 4.5E-37 198.8 20.6 164 11-181 5-174 (178)
58 1c1y_A RAS-related protein RAP 100.0 1.1E-32 3.6E-37 197.0 19.9 162 13-175 3-166 (167)
59 1kao_A RAP2A; GTP-binding prot 100.0 1.1E-32 3.8E-37 196.7 19.8 163 13-176 3-166 (167)
60 2g3y_A GTP-binding protein GEM 100.0 1.7E-32 5.7E-37 203.4 21.4 169 9-178 33-205 (211)
61 2j0v_A RAC-like GTP-binding pr 100.0 1.8E-33 6.1E-38 209.0 15.9 167 11-179 7-183 (212)
62 2atv_A RERG, RAS-like estrogen 100.0 1.5E-32 5.2E-37 201.7 20.5 167 10-178 25-193 (196)
63 2yc2_C IFT27, small RAB-relate 100.0 1.8E-33 6.1E-38 208.1 15.2 171 11-181 18-197 (208)
64 2atx_A Small GTP binding prote 100.0 3E-32 1E-36 199.7 20.9 165 9-175 14-192 (194)
65 1gwn_A RHO-related GTP-binding 100.0 2E-32 6.8E-37 202.5 18.5 168 7-176 22-204 (205)
66 1m7b_A RND3/RHOE small GTP-bin 100.0 1.9E-32 6.5E-37 199.2 18.1 164 10-175 4-182 (184)
67 3con_A GTPase NRAS; structural 100.0 1.2E-31 4.2E-36 195.7 22.4 170 9-180 17-187 (190)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.1E-32 1.4E-36 197.4 18.9 164 11-176 3-180 (186)
69 2j1l_A RHO-related GTP-binding 100.0 4.2E-32 1.4E-36 202.1 19.1 167 11-179 32-212 (214)
70 2gco_A H9, RHO-related GTP-bin 100.0 1.3E-31 4.4E-36 197.6 21.2 165 10-176 22-200 (201)
71 4djt_A GTP-binding nuclear pro 100.0 1.9E-32 6.5E-37 204.3 16.3 173 8-180 6-179 (218)
72 3t1o_A Gliding protein MGLA; G 100.0 1.4E-32 4.7E-37 201.7 15.1 171 6-180 7-196 (198)
73 3l0i_B RAS-related protein RAB 100.0 1.1E-34 3.6E-39 213.7 3.7 167 9-175 29-195 (199)
74 2f9l_A RAB11B, member RAS onco 100.0 7E-31 2.4E-35 193.3 23.7 172 11-182 3-174 (199)
75 2erx_A GTP-binding protein DI- 100.0 9.9E-32 3.4E-36 192.8 18.2 162 12-174 2-165 (172)
76 3gj0_A GTP-binding nuclear pro 100.0 2.5E-32 8.6E-37 204.2 15.6 171 7-180 9-179 (221)
77 2ce2_X GTPase HRAS; signaling 100.0 3.7E-31 1.3E-35 188.5 20.8 161 13-175 3-164 (166)
78 2fv8_A H6, RHO-related GTP-bin 100.0 2.1E-31 7.1E-36 197.3 19.7 165 11-177 23-201 (207)
79 2cjw_A GTP-binding protein GEM 100.0 7.9E-31 2.7E-35 192.0 20.8 167 11-178 4-174 (192)
80 4bas_A ADP-ribosylation factor 100.0 4.6E-31 1.6E-35 193.9 18.1 167 6-178 10-191 (199)
81 4gzl_A RAS-related C3 botulinu 100.0 3.4E-31 1.2E-35 195.8 17.4 163 10-174 27-203 (204)
82 3bwd_D RAC-like GTP-binding pr 100.0 3.6E-32 1.2E-36 197.1 11.9 163 11-175 6-180 (182)
83 1oix_A RAS-related protein RAB 100.0 1.1E-29 3.8E-34 185.8 21.6 169 6-174 22-190 (191)
84 2h57_A ADP-ribosylation factor 100.0 5.7E-30 2E-34 187.0 18.5 162 9-176 17-187 (190)
85 1r8s_A ADP-ribosylation factor 100.0 6.1E-31 2.1E-35 187.5 13.0 156 14-176 1-162 (164)
86 1upt_A ARL1, ADP-ribosylation 100.0 1.8E-30 6.2E-35 186.1 14.6 159 11-176 5-169 (171)
87 1zd9_A ADP-ribosylation factor 100.0 1.3E-29 4.6E-34 184.8 19.4 161 10-176 19-185 (188)
88 1ksh_A ARF-like protein 2; sma 100.0 2.2E-29 7.7E-34 183.1 20.2 160 11-177 16-181 (186)
89 1m2o_B GTP-binding protein SAR 100.0 1.4E-29 4.8E-34 185.0 17.5 155 12-173 22-189 (190)
90 1f6b_A SAR1; gtpases, N-termin 100.0 6.3E-30 2.2E-34 188.1 15.6 155 12-173 24-196 (198)
91 2zej_A Dardarin, leucine-rich 100.0 8.2E-31 2.8E-35 190.6 10.1 165 13-178 2-180 (184)
92 2b6h_A ADP-ribosylation factor 100.0 1.9E-30 6.4E-35 190.0 11.8 158 11-175 27-190 (192)
93 1zj6_A ADP-ribosylation factor 100.0 2.4E-29 8.1E-34 183.2 17.2 160 11-177 14-179 (187)
94 1fzq_A ADP-ribosylation factor 100.0 3.7E-29 1.3E-33 181.4 17.9 159 11-176 14-178 (181)
95 2h17_A ADP-ribosylation factor 100.0 8.1E-30 2.8E-34 184.8 14.1 158 9-173 17-180 (181)
96 1moz_A ARL1, ADP-ribosylation 100.0 3.4E-29 1.2E-33 181.6 15.5 161 11-178 16-182 (183)
97 2x77_A ADP-ribosylation factor 100.0 5.1E-30 1.7E-34 187.0 11.1 160 11-177 20-185 (189)
98 2wkq_A NPH1-1, RAS-related C3 100.0 1.8E-28 6E-33 193.7 20.0 163 12-176 154-330 (332)
99 3llu_A RAS-related GTP-binding 100.0 8.3E-30 2.8E-34 187.1 11.4 163 7-174 14-195 (196)
100 3th5_A RAS-related C3 botulinu 99.9 1.4E-31 4.7E-36 197.8 0.0 162 11-174 28-203 (204)
101 2qu8_A Putative nucleolar GTP- 100.0 1.5E-27 5.3E-32 179.0 18.4 167 11-180 27-209 (228)
102 2wji_A Ferrous iron transport 100.0 4.7E-28 1.6E-32 173.0 14.3 153 13-174 3-163 (165)
103 3c5h_A Glucocorticoid receptor 100.0 3.5E-29 1.2E-33 191.0 6.3 169 5-175 11-254 (255)
104 2lkc_A Translation initiation 100.0 1.9E-27 6.5E-32 171.5 14.5 159 11-178 6-173 (178)
105 2fh5_B SR-beta, signal recogni 100.0 5.8E-28 2E-32 179.5 11.8 160 11-173 5-213 (214)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 1.9E-27 6.5E-32 185.9 15.2 161 12-176 2-181 (307)
107 3o47_A ADP-ribosylation factor 99.9 5.1E-27 1.8E-31 185.0 15.4 158 12-176 164-327 (329)
108 2cxx_A Probable GTP-binding pr 99.9 1.4E-27 4.9E-32 173.9 11.1 158 14-180 2-188 (190)
109 1svi_A GTP-binding protein YSX 99.9 8.4E-27 2.9E-31 170.6 13.9 159 9-174 19-193 (195)
110 2wjg_A FEOB, ferrous iron tran 99.9 7.6E-27 2.6E-31 169.9 13.5 158 11-177 5-170 (188)
111 3lvq_E ARF-GAP with SH3 domain 99.9 3.7E-27 1.3E-31 195.7 12.1 161 11-178 320-486 (497)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 4.9E-28 1.7E-32 188.0 5.9 159 15-180 1-178 (331)
113 2dyk_A GTP-binding protein; GT 99.9 2.7E-26 9.1E-31 162.8 13.4 150 14-174 2-160 (161)
114 3a1s_A Iron(II) transport prot 99.9 4E-26 1.4E-30 174.1 14.7 156 11-175 3-166 (258)
115 3iev_A GTP-binding protein ERA 99.9 1.2E-25 3.9E-30 175.8 17.0 165 7-175 4-181 (308)
116 2gj8_A MNME, tRNA modification 99.9 7.6E-27 2.6E-31 167.9 9.4 154 12-175 3-165 (172)
117 3pqc_A Probable GTP-binding pr 99.9 1.4E-25 4.8E-30 163.9 14.6 159 7-175 17-193 (195)
118 3dpu_A RAB family protein; roc 99.9 8.3E-27 2.8E-31 195.0 8.7 165 9-177 37-209 (535)
119 3iby_A Ferrous iron transport 99.9 4.9E-26 1.7E-30 173.4 9.8 151 14-173 2-164 (256)
120 3b1v_A Ferrous iron uptake tra 99.9 5.8E-26 2E-30 174.2 9.9 153 12-174 2-162 (272)
121 4dhe_A Probable GTP-binding pr 99.9 1.5E-25 5.2E-30 167.4 11.2 167 8-178 24-213 (223)
122 3k53_A Ferrous iron transport 99.9 6.2E-25 2.1E-29 168.9 12.9 156 12-175 2-165 (271)
123 3qq5_A Small GTP-binding prote 99.9 1E-25 3.6E-30 182.0 8.7 190 7-210 28-225 (423)
124 3i8s_A Ferrous iron transport 99.9 1.8E-25 6.2E-30 172.0 9.1 154 13-175 3-168 (274)
125 1nrj_B SR-beta, signal recogni 99.9 1.1E-25 3.8E-30 167.6 5.9 145 9-162 8-170 (218)
126 2hjg_A GTP-binding protein ENG 99.9 2.5E-24 8.6E-29 175.8 13.5 162 11-178 173-351 (436)
127 2e87_A Hypothetical protein PH 99.9 1.9E-23 6.7E-28 166.4 17.8 163 11-178 165-338 (357)
128 3gee_A MNME, tRNA modification 99.9 6E-24 2.1E-28 174.3 14.0 157 12-175 232-397 (476)
129 4dcu_A GTP-binding protein ENG 99.9 1.1E-23 3.8E-28 172.9 13.6 164 10-179 192-372 (456)
130 1wf3_A GTP-binding protein; GT 99.9 3.2E-23 1.1E-27 161.2 15.4 156 11-174 5-171 (301)
131 1lnz_A SPO0B-associated GTP-bi 99.9 8.5E-24 2.9E-28 166.7 10.3 158 14-176 159-330 (342)
132 1xzp_A Probable tRNA modificat 99.9 4.4E-23 1.5E-27 169.4 13.4 154 13-177 243-406 (482)
133 1cip_A Protein (guanine nucleo 99.9 1.2E-22 4.1E-27 160.7 14.7 125 52-178 185-346 (353)
134 1wb1_A Translation elongation 99.9 1.9E-22 6.6E-27 166.1 16.1 160 7-175 13-188 (482)
135 1mky_A Probable GTP-binding pr 99.9 2.3E-22 8E-27 164.3 15.4 152 14-177 2-167 (439)
136 3sjy_A Translation initiation 99.9 7.5E-22 2.6E-26 159.6 17.9 165 8-175 3-191 (403)
137 3cb4_D GTP-binding protein LEP 99.9 4.4E-22 1.5E-26 167.0 16.0 159 12-176 3-182 (599)
138 3lxx_A GTPase IMAP family memb 99.9 8E-22 2.7E-26 148.9 15.3 165 8-176 24-214 (239)
139 2ywe_A GTP-binding protein LEP 99.9 9.2E-22 3.1E-26 164.8 16.9 160 11-176 4-184 (600)
140 1s0u_A EIF-2-gamma, translatio 99.9 2.3E-21 7.8E-26 157.1 18.6 160 10-175 5-197 (408)
141 3geh_A MNME, tRNA modification 99.9 8.4E-23 2.9E-27 167.0 9.8 153 12-176 223-384 (462)
142 2qtf_A Protein HFLX, GTP-bindi 99.9 1.2E-21 4.1E-26 155.9 16.1 163 13-178 178-356 (364)
143 3ohm_A Guanine nucleotide-bind 99.9 9.5E-22 3.2E-26 153.5 14.9 126 51-178 158-320 (327)
144 3j2k_7 ERF3, eukaryotic polype 99.9 7.8E-22 2.7E-26 160.9 14.6 158 9-168 13-217 (439)
145 2xtz_A Guanine nucleotide-bind 99.9 7.3E-22 2.5E-26 156.2 13.4 119 60-178 181-347 (354)
146 1kk1_A EIF2gamma; initiation o 99.9 1.2E-21 4.2E-26 158.8 15.0 161 9-175 6-199 (410)
147 3t5d_A Septin-7; GTP-binding p 99.9 1.6E-22 5.5E-27 155.7 9.2 161 10-174 5-202 (274)
148 2hjg_A GTP-binding protein ENG 99.9 1.6E-22 5.6E-27 165.1 9.1 152 14-175 4-164 (436)
149 1zcb_A G alpha I/13; GTP-bindi 99.9 1.7E-21 5.9E-26 154.6 14.5 125 53-179 194-356 (362)
150 2xtp_A GTPase IMAP family memb 99.9 1.5E-21 5.2E-26 149.1 13.7 163 10-176 19-208 (260)
151 3lxw_A GTPase IMAP family memb 99.9 1.4E-21 4.9E-26 148.1 12.6 166 9-176 17-208 (247)
152 1mky_A Probable GTP-binding pr 99.9 7E-21 2.4E-25 155.6 16.9 162 11-178 178-357 (439)
153 1ega_A Protein (GTP-binding pr 99.9 1.9E-21 6.6E-26 151.4 12.3 155 12-174 7-173 (301)
154 2qag_A Septin-2, protein NEDD5 99.9 8.8E-23 3E-27 162.6 4.8 164 11-180 35-237 (361)
155 3p26_A Elongation factor 1 alp 99.9 2E-21 6.8E-26 160.5 12.2 150 12-165 32-227 (483)
156 1zun_B Sulfate adenylate trans 99.9 3.1E-21 1E-25 157.4 12.7 158 7-169 18-217 (434)
157 3izy_P Translation initiation 99.9 1.2E-23 4E-28 174.1 -1.8 159 12-175 3-167 (537)
158 1d2e_A Elongation factor TU (E 99.9 2.7E-21 9.1E-26 156.1 11.6 159 13-175 3-194 (397)
159 3tr5_A RF-3, peptide chain rel 99.9 4.4E-21 1.5E-25 159.2 12.9 115 12-132 12-148 (528)
160 2elf_A Protein translation elo 99.9 2.8E-21 9.5E-26 154.2 10.9 147 15-177 23-181 (370)
161 2ged_A SR-beta, signal recogni 99.9 2.5E-21 8.4E-26 141.3 9.4 116 10-134 45-172 (193)
162 2c78_A Elongation factor TU-A; 99.8 2.2E-21 7.6E-26 157.0 9.1 149 10-162 8-180 (405)
163 4fid_A G protein alpha subunit 99.8 4.7E-21 1.6E-25 150.1 9.9 116 61-176 160-328 (340)
164 1g7s_A Translation initiation 99.8 1.7E-20 5.9E-25 157.5 13.2 159 13-178 5-220 (594)
165 4dcu_A GTP-binding protein ENG 99.8 2.7E-21 9.4E-26 158.7 8.3 156 10-175 20-184 (456)
166 1jny_A EF-1-alpha, elongation 99.8 6.5E-22 2.2E-26 161.4 4.3 152 11-168 4-205 (435)
167 1azs_C GS-alpha; complex (lyas 99.8 6.1E-20 2.1E-24 146.8 15.2 127 53-181 210-390 (402)
168 1r5b_A Eukaryotic peptide chai 99.8 1.8E-21 6.2E-26 159.9 4.6 155 11-167 41-243 (467)
169 3izq_1 HBS1P, elongation facto 99.8 6.8E-21 2.3E-25 160.7 7.9 153 11-167 165-363 (611)
170 1zo1_I IF2, translation initia 99.8 2.9E-22 9.8E-27 164.6 -0.8 155 12-172 3-163 (501)
171 2aka_B Dynamin-1; fusion prote 99.8 1.3E-20 4.5E-25 146.6 7.6 164 10-177 23-254 (299)
172 3avx_A Elongation factor TS, e 99.8 3.8E-20 1.3E-24 162.6 10.7 162 9-174 292-484 (1289)
173 1pui_A ENGB, probable GTP-bind 99.8 2E-19 6.8E-24 132.9 12.6 157 10-175 23-198 (210)
174 1f60_A Elongation factor EEF1A 99.8 9.6E-20 3.3E-24 149.4 11.1 150 11-166 5-202 (458)
175 2dy1_A Elongation factor G; tr 99.8 6.9E-19 2.3E-23 150.1 14.4 116 10-131 6-139 (665)
176 3def_A T7I23.11 protein; chlor 99.8 1E-18 3.5E-23 133.6 13.4 124 11-137 34-170 (262)
177 2j69_A Bacterial dynamin-like 99.8 1.4E-18 4.7E-23 148.9 15.2 165 12-179 68-328 (695)
178 1udx_A The GTP-binding protein 99.8 8.6E-19 2.9E-23 141.3 13.1 161 14-178 158-327 (416)
179 1dar_A EF-G, elongation factor 99.8 2.5E-18 8.4E-23 147.2 16.2 120 7-132 6-143 (691)
180 3t34_A Dynamin-related protein 99.8 2.1E-19 7.1E-24 143.4 7.7 157 12-170 33-255 (360)
181 3mca_A HBS1, elongation factor 99.8 1.9E-20 6.5E-25 157.6 1.5 150 10-164 174-371 (592)
182 2h5e_A Peptide chain release f 99.8 1E-18 3.4E-23 145.3 11.0 116 11-132 11-148 (529)
183 1jwy_B Dynamin A GTPase domain 99.8 3.2E-18 1.1E-22 134.1 12.7 163 11-176 22-262 (315)
184 2qnr_A Septin-2, protein NEDD5 99.8 1.3E-19 4.4E-24 141.0 4.5 163 10-178 15-216 (301)
185 2rdo_7 EF-G, elongation factor 99.8 3.2E-17 1.1E-21 140.5 18.0 120 9-132 6-148 (704)
186 2qag_C Septin-7; cell cycle, c 99.8 1.3E-18 4.5E-23 140.3 8.2 161 10-174 28-225 (418)
187 1h65_A Chloroplast outer envel 99.8 3.5E-18 1.2E-22 131.1 10.0 124 11-137 37-173 (270)
188 2xex_A Elongation factor G; GT 99.7 3.8E-17 1.3E-21 139.9 16.7 117 10-132 7-141 (693)
189 1u0l_A Probable GTPase ENGC; p 99.7 1.2E-18 4E-23 135.6 5.5 134 28-172 32-169 (301)
190 1wxq_A GTP-binding protein; st 99.7 1.3E-18 4.6E-23 139.8 4.9 85 14-98 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 2.6E-17 8.9E-22 122.5 6.9 156 12-178 29-216 (221)
192 2x2e_A Dynamin-1; nitration, h 99.7 8.8E-18 3E-22 133.6 4.0 159 12-173 30-255 (353)
193 1jal_A YCHF protein; nucleotid 99.7 8.5E-16 2.9E-20 121.4 15.1 146 13-158 2-239 (363)
194 3vqt_A RF-3, peptide chain rel 99.7 1.3E-15 4.5E-20 127.1 15.6 114 12-131 30-165 (548)
195 3p32_A Probable GTPase RV1496/ 99.7 1.4E-16 4.8E-21 126.7 7.8 105 62-177 172-285 (355)
196 2hf9_A Probable hydrogenase ni 99.6 3.1E-18 1.1E-22 127.9 -3.1 154 12-176 37-224 (226)
197 1n0u_A EF-2, elongation factor 99.6 7.7E-16 2.6E-20 134.4 10.6 117 11-131 17-163 (842)
198 4a9a_A Ribosome-interacting GT 99.6 2.3E-14 7.7E-19 113.9 16.3 153 11-167 70-239 (376)
199 2qpt_A EH domain-containing pr 99.6 6E-16 2.1E-20 129.3 7.6 122 8-132 60-232 (550)
200 2dby_A GTP-binding protein; GD 99.6 2.1E-15 7.2E-20 119.8 9.7 154 14-167 2-253 (368)
201 2www_A Methylmalonic aciduria 99.6 5.8E-16 2E-20 122.7 4.9 103 62-176 167-279 (349)
202 3j25_A Tetracycline resistance 99.6 8.3E-16 2.8E-20 130.6 3.9 114 14-131 3-132 (638)
203 1yrb_A ATP(GTP)binding protein 99.5 3.4E-14 1.2E-18 108.2 10.3 112 62-176 109-257 (262)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 1.5E-14 5.2E-19 123.7 9.0 159 11-173 49-275 (772)
205 4fn5_A EF-G 1, elongation fact 99.5 2.1E-13 7.1E-18 117.4 15.6 118 10-131 10-150 (709)
206 2p67_A LAO/AO transport system 99.5 3.5E-15 1.2E-19 118.0 4.3 104 62-176 149-261 (341)
207 2qm8_A GTPase/ATPase; G protei 99.4 1.2E-13 4E-18 109.0 6.5 103 62-175 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 2.3E-13 7.8E-18 105.8 7.8 97 72-171 66-164 (302)
209 2ohf_A Protein OLA1, GTP-bindi 99.4 7.5E-13 2.6E-17 105.6 6.1 88 11-98 20-129 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.2E-11 7.7E-16 97.3 13.8 87 11-97 18-127 (392)
211 3l82_B F-box only protein 4; T 99.3 2.2E-12 7.7E-17 93.3 4.7 102 71-175 111-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 5E-11 1.7E-15 90.4 5.9 105 69-175 194-307 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 2.4E-11 8.2E-16 96.9 1.5 140 14-163 163-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 3.2E-09 1.1E-13 85.5 11.5 140 13-157 42-217 (427)
215 3h2y_A GTPase family protein; 99.0 2.6E-11 8.8E-16 96.7 -0.9 136 14-157 161-311 (368)
216 3h2y_A GTPase family protein; 99.0 1.9E-09 6.5E-14 85.9 9.7 96 71-173 55-157 (368)
217 3sop_A Neuronal-specific septi 99.0 1.9E-09 6.6E-14 82.2 8.6 137 13-154 2-178 (270)
218 2j37_W Signal recognition part 99.0 3.9E-10 1.3E-14 92.9 4.9 151 12-173 100-310 (504)
219 3ec1_A YQEH GTPase; atnos1, at 98.9 2.8E-09 9.7E-14 84.9 5.8 97 71-174 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.8 1.4E-08 4.6E-13 78.1 7.9 102 66-177 3-107 (282)
221 1tq4_A IIGP1, interferon-induc 98.8 1.5E-07 5E-12 75.9 14.0 159 14-178 70-255 (413)
222 1puj_A YLQF, conserved hypothe 98.6 2.4E-08 8.3E-13 76.6 5.1 58 11-72 118-175 (282)
223 3cnl_A YLQF, putative uncharac 98.6 1.4E-08 4.8E-13 77.1 2.4 56 14-73 100-155 (262)
224 3dm5_A SRP54, signal recogniti 98.6 1.5E-07 5.2E-12 76.2 7.8 86 62-157 183-274 (443)
225 2v3c_C SRP54, signal recogniti 98.5 7.4E-07 2.5E-11 72.3 10.1 83 62-155 181-271 (432)
226 3kl4_A SRP54, signal recogniti 98.4 3E-07 1E-11 74.4 5.0 90 62-163 180-277 (433)
227 3cnl_A YLQF, putative uncharac 98.3 2.9E-07 9.8E-12 69.9 3.7 94 69-173 4-98 (262)
228 1f5n_A Interferon-induced guan 98.3 3.5E-07 1.2E-11 76.7 4.4 63 11-73 36-102 (592)
229 1j8m_F SRP54, signal recogniti 98.3 1.5E-06 5.2E-11 67.1 7.6 91 62-165 181-280 (297)
230 1t9h_A YLOQ, probable GTPase E 98.2 3.8E-07 1.3E-11 70.6 2.6 89 77-168 78-169 (307)
231 3szr_A Interferon-induced GTP- 98.2 2.5E-06 8.6E-11 72.3 7.1 26 14-39 46-71 (608)
232 3e70_C DPA, signal recognition 98.0 8E-06 2.7E-10 63.9 5.5 140 13-164 129-308 (328)
233 2rcn_A Probable GTPase ENGC; Y 98.0 2E-05 7E-10 62.2 7.8 84 82-169 127-212 (358)
234 1bif_A 6-phosphofructo-2-kinas 97.8 1.6E-06 5.4E-11 71.3 -1.7 113 12-129 38-160 (469)
235 3q5d_A Atlastin-1; G protein, 97.8 3E-05 1E-09 63.0 5.3 26 11-36 65-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 5.3E-05 1.8E-09 53.9 3.3 23 15-37 2-24 (178)
237 2xxa_A Signal recognition part 97.5 0.0007 2.4E-08 54.9 10.1 83 62-155 184-273 (433)
238 1kgd_A CASK, peripheral plasma 97.5 6.6E-05 2.3E-09 53.4 3.1 22 15-36 7-28 (180)
239 1t9h_A YLOQ, probable GTPase E 97.4 3.5E-05 1.2E-09 59.6 1.4 24 14-37 174-197 (307)
240 1lvg_A Guanylate kinase, GMP k 97.4 7.8E-05 2.7E-09 53.9 3.1 22 15-36 6-27 (198)
241 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 52.5 3.0 22 16-37 4-25 (186)
242 3tr0_A Guanylate kinase, GMP k 97.3 0.00012 4.2E-09 52.9 3.0 22 15-36 9-30 (205)
243 3ney_A 55 kDa erythrocyte memb 97.3 0.00017 6E-09 52.0 3.4 25 12-36 18-42 (197)
244 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 52.9 3.0 23 15-37 22-44 (207)
245 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 53.4 3.0 23 15-37 18-40 (219)
246 2ffh_A Protein (FFH); SRP54, s 97.3 0.00067 2.3E-08 54.8 7.1 85 62-156 181-271 (425)
247 1z6g_A Guanylate kinase; struc 97.3 0.00015 5.1E-09 53.3 3.0 23 15-37 25-47 (218)
248 1zp6_A Hypothetical protein AT 97.3 0.00014 4.9E-09 51.9 2.8 23 14-36 10-32 (191)
249 4gp7_A Metallophosphoesterase; 97.2 0.00015 5E-09 51.2 2.7 20 15-34 11-30 (171)
250 2yv5_A YJEQ protein; hydrolase 97.2 0.00065 2.2E-08 52.5 6.3 22 15-37 167-188 (302)
251 3c8u_A Fructokinase; YP_612366 97.2 0.00019 6.6E-09 52.2 3.1 27 11-37 20-46 (208)
252 1ex7_A Guanylate kinase; subst 97.2 0.0002 6.9E-09 51.2 3.1 21 16-36 4-24 (186)
253 3tau_A Guanylate kinase, GMP k 97.2 0.0002 7E-09 52.1 3.0 23 15-37 10-32 (208)
254 1htw_A HI0065; nucleotide-bind 97.2 0.00022 7.4E-09 49.7 3.0 23 15-37 35-57 (158)
255 3tif_A Uncharacterized ABC tra 97.2 0.00021 7.1E-09 53.2 3.0 23 15-37 33-55 (235)
256 2qor_A Guanylate kinase; phosp 97.1 0.00027 9.4E-09 51.2 3.0 24 14-37 13-36 (204)
257 1kag_A SKI, shikimate kinase I 97.1 0.0003 1E-08 49.4 3.0 23 14-36 5-27 (173)
258 2pcj_A ABC transporter, lipopr 97.1 0.00025 8.6E-09 52.3 2.8 23 15-37 32-54 (224)
259 2bdt_A BH3686; alpha-beta prot 97.1 0.0003 1E-08 50.3 3.0 21 15-35 4-24 (189)
260 2j41_A Guanylate kinase; GMP, 97.1 0.00029 9.9E-09 50.9 3.0 24 14-37 7-30 (207)
261 2onk_A Molybdate/tungstate ABC 97.1 0.00031 1.1E-08 52.4 3.1 23 15-37 26-48 (240)
262 1sgw_A Putative ABC transporte 97.0 0.00033 1.1E-08 51.3 3.0 23 15-37 37-59 (214)
263 2i3b_A HCR-ntpase, human cance 97.0 0.00032 1.1E-08 50.4 2.8 23 15-37 3-25 (189)
264 1b0u_A Histidine permease; ABC 97.0 0.00033 1.1E-08 53.0 3.0 23 15-37 34-56 (262)
265 3gfo_A Cobalt import ATP-bindi 97.0 0.00033 1.1E-08 53.4 3.0 23 15-37 36-58 (275)
266 4eun_A Thermoresistant glucoki 97.0 0.00035 1.2E-08 50.4 3.0 23 14-36 30-52 (200)
267 2cbz_A Multidrug resistance-as 97.0 0.00033 1.1E-08 52.1 3.0 23 15-37 33-55 (237)
268 1knq_A Gluconate kinase; ALFA/ 97.0 0.00049 1.7E-08 48.4 3.7 23 14-36 9-31 (175)
269 3asz_A Uridine kinase; cytidin 97.0 0.00032 1.1E-08 51.0 2.8 23 14-36 7-29 (211)
270 2rcn_A Probable GTPase ENGC; Y 97.0 0.00033 1.1E-08 55.3 3.0 24 15-38 217-240 (358)
271 4g1u_C Hemin import ATP-bindin 97.0 0.00035 1.2E-08 53.0 2.9 23 15-37 39-61 (266)
272 1g6h_A High-affinity branched- 97.0 0.00036 1.2E-08 52.6 3.0 23 15-37 35-57 (257)
273 2eyu_A Twitching motility prot 97.0 0.00038 1.3E-08 52.6 3.1 22 15-36 27-48 (261)
274 3kb2_A SPBC2 prophage-derived 97.0 0.00039 1.3E-08 48.6 3.0 22 15-36 3-24 (173)
275 2pze_A Cystic fibrosis transme 97.0 0.00038 1.3E-08 51.5 3.0 23 15-37 36-58 (229)
276 3b85_A Phosphate starvation-in 97.0 0.00033 1.1E-08 51.1 2.6 22 15-36 24-45 (208)
277 3lw7_A Adenylate kinase relate 97.0 0.00039 1.3E-08 48.6 2.9 20 14-33 2-21 (179)
278 2ff7_A Alpha-hemolysin translo 97.0 0.00038 1.3E-08 52.1 3.0 23 15-37 37-59 (247)
279 2olj_A Amino acid ABC transpor 97.0 0.00039 1.3E-08 52.6 3.0 23 15-37 52-74 (263)
280 1mv5_A LMRA, multidrug resista 97.0 0.00044 1.5E-08 51.7 3.2 23 15-37 30-52 (243)
281 1ly1_A Polynucleotide kinase; 97.0 0.00043 1.5E-08 48.8 3.1 22 14-35 3-24 (181)
282 1np6_A Molybdopterin-guanine d 97.0 0.00044 1.5E-08 48.9 3.0 23 14-36 7-29 (174)
283 2bbw_A Adenylate kinase 4, AK4 97.0 0.00044 1.5E-08 51.7 3.2 21 14-34 28-48 (246)
284 1ji0_A ABC transporter; ATP bi 97.0 0.0004 1.4E-08 51.8 3.0 23 15-37 34-56 (240)
285 1vpl_A ABC transporter, ATP-bi 97.0 0.00042 1.4E-08 52.2 3.0 23 15-37 43-65 (256)
286 2qi9_C Vitamin B12 import ATP- 97.0 0.00043 1.5E-08 51.9 3.0 23 15-37 28-50 (249)
287 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00044 1.5E-08 51.9 3.0 22 15-36 31-52 (250)
288 2ghi_A Transport protein; mult 96.9 0.00044 1.5E-08 52.2 3.0 23 15-37 48-70 (260)
289 2zu0_C Probable ATP-dependent 96.9 0.00048 1.6E-08 52.2 3.1 22 15-36 48-69 (267)
290 2v9p_A Replication protein E1; 96.9 0.00049 1.7E-08 53.1 3.2 22 15-36 128-149 (305)
291 3ec2_A DNA replication protein 96.9 0.00041 1.4E-08 49.1 2.5 24 14-37 39-62 (180)
292 2ihy_A ABC transporter, ATP-bi 96.9 0.00048 1.7E-08 52.5 3.0 23 15-37 49-71 (279)
293 2ixe_A Antigen peptide transpo 96.9 0.00048 1.6E-08 52.4 3.0 23 15-37 47-69 (271)
294 3fb4_A Adenylate kinase; psych 96.9 0.00054 1.9E-08 49.9 3.2 22 14-35 1-22 (216)
295 3vaa_A Shikimate kinase, SK; s 96.9 0.00058 2E-08 49.3 3.3 23 14-36 26-48 (199)
296 3t61_A Gluconokinase; PSI-biol 96.9 0.00052 1.8E-08 49.6 3.0 23 14-36 19-41 (202)
297 2if2_A Dephospho-COA kinase; a 96.9 0.00053 1.8E-08 49.5 3.0 22 14-35 2-23 (204)
298 2nq2_C Hypothetical ABC transp 96.9 0.0005 1.7E-08 51.7 2.9 23 15-37 33-55 (253)
299 3dl0_A Adenylate kinase; phosp 96.9 0.00059 2E-08 49.8 3.2 22 14-35 1-22 (216)
300 3uie_A Adenylyl-sulfate kinase 96.9 0.00055 1.9E-08 49.4 3.0 25 13-37 25-49 (200)
301 3aez_A Pantothenate kinase; tr 96.9 0.00053 1.8E-08 53.2 3.0 28 10-37 87-114 (312)
302 2yz2_A Putative ABC transporte 96.9 0.00053 1.8E-08 52.0 3.0 23 15-37 35-57 (266)
303 1cke_A CK, MSSA, protein (cyti 96.9 0.0006 2.1E-08 50.0 3.2 22 14-35 6-27 (227)
304 1qhx_A CPT, protein (chloramph 96.9 0.00061 2.1E-08 48.0 3.1 23 14-36 4-26 (178)
305 1u0l_A Probable GTPase ENGC; p 96.9 0.00065 2.2E-08 52.4 3.4 24 15-38 171-194 (301)
306 3lnc_A Guanylate kinase, GMP k 96.9 0.00034 1.2E-08 51.7 1.7 22 15-36 29-51 (231)
307 2chg_A Replication factor C sm 96.9 0.003 1E-07 45.7 6.8 22 15-36 40-61 (226)
308 2jaq_A Deoxyguanosine kinase; 96.8 0.00067 2.3E-08 48.8 3.2 22 15-36 2-23 (205)
309 1jjv_A Dephospho-COA kinase; P 96.8 0.00074 2.5E-08 48.9 3.4 22 14-35 3-24 (206)
310 2f1r_A Molybdopterin-guanine d 96.8 0.0003 1E-08 49.7 1.2 23 15-37 4-26 (171)
311 2cdn_A Adenylate kinase; phosp 96.8 0.00083 2.8E-08 48.4 3.6 27 10-36 17-43 (201)
312 3co5_A Putative two-component 96.8 0.0026 9E-08 43.2 5.9 23 14-36 28-50 (143)
313 1sxj_E Activator 1 40 kDa subu 96.8 0.0059 2E-07 47.9 8.7 22 16-37 39-60 (354)
314 2pjz_A Hypothetical protein ST 96.8 0.00071 2.4E-08 51.2 3.2 23 15-37 32-54 (263)
315 2qt1_A Nicotinamide riboside k 96.8 0.00093 3.2E-08 48.4 3.7 25 12-36 20-44 (207)
316 2ehv_A Hypothetical protein PH 96.8 0.0007 2.4E-08 50.4 3.0 21 15-35 32-52 (251)
317 1nks_A Adenylate kinase; therm 96.8 0.00075 2.6E-08 48.1 3.0 22 15-36 3-24 (194)
318 2yvu_A Probable adenylyl-sulfa 96.8 0.0012 4E-08 47.0 4.1 26 11-36 11-36 (186)
319 4a74_A DNA repair and recombin 96.8 0.00065 2.2E-08 49.8 2.8 23 15-37 27-49 (231)
320 2jeo_A Uridine-cytidine kinase 96.8 0.00076 2.6E-08 50.3 3.0 24 13-36 25-48 (245)
321 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.7E-08 47.0 3.6 22 14-35 5-26 (186)
322 2kjq_A DNAA-related protein; s 96.7 0.00064 2.2E-08 46.8 2.3 23 15-37 38-60 (149)
323 1lw7_A Transcriptional regulat 96.7 0.0007 2.4E-08 53.7 2.8 25 13-37 170-194 (365)
324 3nh6_A ATP-binding cassette SU 96.7 0.00053 1.8E-08 53.0 2.0 23 15-37 82-104 (306)
325 1kht_A Adenylate kinase; phosp 96.7 0.00095 3.2E-08 47.5 3.3 22 14-35 4-25 (192)
326 3trf_A Shikimate kinase, SK; a 96.7 0.00095 3.3E-08 47.3 3.2 23 14-36 6-28 (185)
327 1xjc_A MOBB protein homolog; s 96.7 0.00094 3.2E-08 46.9 3.1 23 14-36 5-27 (169)
328 1e4v_A Adenylate kinase; trans 96.7 0.00085 2.9E-08 48.9 3.0 21 15-35 2-22 (214)
329 2bbs_A Cystic fibrosis transme 96.7 0.00077 2.6E-08 51.7 2.7 23 15-37 66-88 (290)
330 3jvv_A Twitching mobility prot 96.7 0.00084 2.9E-08 53.0 3.0 22 15-36 125-146 (356)
331 3sr0_A Adenylate kinase; phosp 96.7 0.001 3.4E-08 48.4 3.2 22 14-35 1-22 (206)
332 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.8E-08 47.2 3.3 23 14-36 6-28 (193)
333 1rj9_A FTSY, signal recognitio 96.7 0.00093 3.2E-08 51.6 3.0 22 14-35 103-124 (304)
334 1y63_A LMAJ004144AAA protein; 96.7 0.0012 4.2E-08 46.9 3.5 24 13-36 10-33 (184)
335 1ukz_A Uridylate kinase; trans 96.7 0.0015 5.1E-08 47.1 4.0 23 13-35 15-37 (203)
336 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00085 2.9E-08 53.0 2.8 23 15-37 32-54 (359)
337 3tui_C Methionine import ATP-b 96.7 0.00099 3.4E-08 52.7 3.1 23 15-37 56-78 (366)
338 1z47_A CYSA, putative ABC-tran 96.6 0.00099 3.4E-08 52.5 3.0 23 15-37 43-65 (355)
339 3b9q_A Chloroplast SRP recepto 96.6 0.001 3.5E-08 51.4 3.0 24 13-36 100-123 (302)
340 1via_A Shikimate kinase; struc 96.6 0.001 3.5E-08 46.8 2.8 22 15-36 6-27 (175)
341 2plr_A DTMP kinase, probable t 96.6 0.0013 4.5E-08 47.5 3.5 23 14-36 5-27 (213)
342 2pt5_A Shikimate kinase, SK; a 96.6 0.0013 4.3E-08 45.9 3.2 21 15-35 2-22 (168)
343 2x8a_A Nuclear valosin-contain 96.6 0.0011 3.6E-08 50.5 3.0 21 16-36 47-67 (274)
344 3iij_A Coilin-interacting nucl 96.6 0.0013 4.4E-08 46.5 3.3 24 13-36 11-34 (180)
345 3tqc_A Pantothenate kinase; bi 96.6 0.0018 6.2E-08 50.3 4.3 27 10-36 89-115 (321)
346 2yyz_A Sugar ABC transporter, 96.6 0.0011 3.6E-08 52.5 3.0 23 15-37 31-53 (359)
347 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.2E-08 48.2 3.2 22 14-35 5-26 (220)
348 3rlf_A Maltose/maltodextrin im 96.6 0.0011 3.7E-08 52.8 3.1 23 15-37 31-53 (381)
349 1gvn_B Zeta; postsegregational 96.6 0.0015 5.2E-08 50.0 3.8 25 12-36 32-56 (287)
350 1odf_A YGR205W, hypothetical 3 96.6 0.0017 5.8E-08 49.8 4.1 25 11-35 29-53 (290)
351 3tlx_A Adenylate kinase 2; str 96.6 0.0015 5E-08 48.8 3.6 24 12-35 28-51 (243)
352 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.001 3.5E-08 52.1 2.8 23 15-37 173-195 (330)
353 2it1_A 362AA long hypothetical 96.6 0.0011 3.8E-08 52.4 3.1 23 15-37 31-53 (362)
354 1tev_A UMP-CMP kinase; ploop, 96.6 0.0015 5.2E-08 46.5 3.5 22 14-35 4-25 (196)
355 2ewv_A Twitching motility prot 96.6 0.0011 3.7E-08 52.7 3.0 22 15-36 138-159 (372)
356 1sq5_A Pantothenate kinase; P- 96.6 0.0011 3.7E-08 51.3 2.8 25 12-36 79-103 (308)
357 2gza_A Type IV secretion syste 96.6 0.001 3.5E-08 52.7 2.7 23 15-37 177-199 (361)
358 1rz3_A Hypothetical protein rb 96.6 0.0012 4.1E-08 47.7 2.8 24 12-35 21-44 (201)
359 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0058 2E-07 49.6 7.0 63 10-72 64-150 (457)
360 1g29_1 MALK, maltose transport 96.6 0.0012 4.1E-08 52.4 3.0 23 15-37 31-53 (372)
361 1v43_A Sugar-binding transport 96.6 0.0012 4.2E-08 52.4 3.1 23 15-37 39-61 (372)
362 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.8E-08 48.1 3.2 21 15-35 2-22 (223)
363 1ixz_A ATP-dependent metallopr 96.6 0.0013 4.4E-08 49.2 3.1 22 16-37 52-73 (254)
364 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.7E-08 48.3 3.0 22 14-35 8-29 (227)
365 2vp4_A Deoxynucleoside kinase; 96.5 0.0011 3.9E-08 48.9 2.6 26 11-36 18-43 (230)
366 2wwf_A Thymidilate kinase, put 96.5 0.0019 6.5E-08 46.7 3.7 24 13-36 10-33 (212)
367 1jbk_A CLPB protein; beta barr 96.5 0.0016 5.5E-08 45.9 3.3 24 14-37 44-67 (195)
368 2ze6_A Isopentenyl transferase 96.5 0.0014 4.8E-08 49.2 3.1 21 15-35 3-23 (253)
369 2v54_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 46.7 3.4 23 14-36 5-27 (204)
370 1gtv_A TMK, thymidylate kinase 96.5 0.00052 1.8E-08 49.9 0.6 22 15-36 2-23 (214)
371 1p9r_A General secretion pathw 96.5 0.0014 4.7E-08 52.9 3.0 23 15-37 169-191 (418)
372 2z0h_A DTMP kinase, thymidylat 96.5 0.0016 5.6E-08 46.5 3.0 22 15-36 2-23 (197)
373 2p5t_B PEZT; postsegregational 96.5 0.0018 6E-08 48.6 3.3 27 10-36 29-55 (253)
374 4e22_A Cytidylate kinase; P-lo 96.5 0.0018 6.1E-08 48.6 3.3 21 14-34 28-48 (252)
375 3d31_A Sulfate/molybdate ABC t 96.5 0.001 3.4E-08 52.4 1.9 23 15-37 28-50 (348)
376 2pbr_A DTMP kinase, thymidylat 96.5 0.0018 6.2E-08 46.1 3.2 21 15-35 2-22 (195)
377 1qf9_A UMP/CMP kinase, protein 96.4 0.0024 8.2E-08 45.3 3.8 22 14-35 7-28 (194)
378 2c95_A Adenylate kinase 1; tra 96.4 0.0018 6.1E-08 46.3 3.1 22 14-35 10-31 (196)
379 1uj2_A Uridine-cytidine kinase 96.4 0.002 6.9E-08 48.2 3.4 26 10-35 19-44 (252)
380 2og2_A Putative signal recogni 96.4 0.0017 5.7E-08 51.4 3.0 24 13-36 157-180 (359)
381 1e6c_A Shikimate kinase; phosp 96.4 0.0019 6.5E-08 45.1 3.1 21 15-35 4-24 (173)
382 2oap_1 GSPE-2, type II secreti 96.4 0.0016 5.3E-08 54.1 2.9 23 15-37 262-284 (511)
383 3be4_A Adenylate kinase; malar 96.4 0.0018 6.2E-08 47.3 3.0 22 14-35 6-27 (217)
384 1zak_A Adenylate kinase; ATP:A 96.4 0.0016 5.6E-08 47.6 2.8 23 14-36 6-28 (222)
385 2pez_A Bifunctional 3'-phospho 96.4 0.002 6.8E-08 45.5 3.1 23 14-36 6-28 (179)
386 2bwj_A Adenylate kinase 5; pho 96.4 0.002 6.7E-08 46.1 3.1 23 14-36 13-35 (199)
387 3gd7_A Fusion complex of cysti 96.4 0.0016 5.5E-08 52.0 2.8 22 15-36 49-70 (390)
388 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.024 8.1E-07 44.1 9.4 24 14-37 46-69 (322)
389 1iy2_A ATP-dependent metallopr 96.4 0.0019 6.4E-08 49.1 3.1 22 16-37 76-97 (278)
390 1in4_A RUVB, holliday junction 96.4 0.0018 6.2E-08 50.7 3.0 23 15-37 53-75 (334)
391 1uf9_A TT1252 protein; P-loop, 96.4 0.0023 7.7E-08 46.0 3.3 24 13-36 8-31 (203)
392 1ak2_A Adenylate kinase isoenz 96.4 0.0022 7.6E-08 47.4 3.3 24 13-36 16-39 (233)
393 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.002 6.7E-08 48.6 3.1 23 14-36 5-27 (260)
394 1nij_A Hypothetical protein YJ 96.4 0.0015 5E-08 50.8 2.4 24 14-37 5-28 (318)
395 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.002 6.8E-08 47.2 3.0 23 15-37 25-47 (235)
396 3uc9_A Increased recombination 96.4 0.0056 1.9E-07 44.9 5.2 26 12-37 28-53 (233)
397 2yhs_A FTSY, cell division pro 96.4 0.0019 6.6E-08 53.0 3.1 23 13-35 293-315 (503)
398 3u61_B DNA polymerase accessor 96.4 0.068 2.3E-06 41.3 11.8 22 16-37 51-72 (324)
399 1nn5_A Similar to deoxythymidy 96.3 0.002 6.7E-08 46.8 2.8 23 14-36 10-32 (215)
400 2iyv_A Shikimate kinase, SK; t 96.3 0.0022 7.6E-08 45.4 3.0 21 15-35 4-24 (184)
401 2grj_A Dephospho-COA kinase; T 96.3 0.003 1E-07 45.3 3.7 26 11-36 10-35 (192)
402 1oxx_K GLCV, glucose, ABC tran 96.3 0.00099 3.4E-08 52.6 1.2 23 15-37 33-55 (353)
403 3kta_A Chromosome segregation 96.3 0.0021 7.3E-08 45.4 2.8 21 15-35 28-48 (182)
404 2obl_A ESCN; ATPase, hydrolase 96.3 0.0022 7.4E-08 50.5 3.1 23 15-37 73-95 (347)
405 3umf_A Adenylate kinase; rossm 96.3 0.0024 8.2E-08 46.8 3.1 21 16-36 32-52 (217)
406 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0018 6E-08 53.0 2.6 23 14-36 139-161 (460)
407 2vli_A Antibiotic resistance p 96.3 0.0016 5.4E-08 46.0 2.1 23 14-36 6-28 (183)
408 1zuh_A Shikimate kinase; alpha 96.3 0.0028 9.6E-08 44.2 3.3 23 13-35 7-29 (168)
409 3pfi_A Holliday junction ATP-d 96.3 0.02 6.8E-07 44.6 8.4 23 14-36 56-78 (338)
410 1vht_A Dephospho-COA kinase; s 96.3 0.0029 1E-07 46.1 3.5 22 14-35 5-26 (218)
411 2p65_A Hypothetical protein PF 96.2 0.002 6.9E-08 45.3 2.4 24 14-37 44-67 (187)
412 1lv7_A FTSH; alpha/beta domain 96.2 0.0026 8.8E-08 47.7 3.0 23 14-36 46-68 (257)
413 1m7g_A Adenylylsulfate kinase; 96.2 0.0028 9.4E-08 46.1 3.0 24 13-36 25-48 (211)
414 3nwj_A ATSK2; P loop, shikimat 96.2 0.0025 8.6E-08 47.8 2.8 22 14-35 49-70 (250)
415 1cr0_A DNA primase/helicase; R 96.2 0.0025 8.5E-08 48.9 2.8 23 15-37 37-59 (296)
416 2w58_A DNAI, primosome compone 96.2 0.0029 1E-07 45.5 3.0 24 14-37 55-78 (202)
417 3bos_A Putative DNA replicatio 96.2 0.0032 1.1E-07 46.3 3.2 24 13-36 52-75 (242)
418 4eaq_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 46.6 3.0 26 12-37 25-50 (229)
419 2cvh_A DNA repair and recombin 96.1 0.0031 1.1E-07 45.8 3.0 21 15-35 22-42 (220)
420 3r20_A Cytidylate kinase; stru 96.1 0.0035 1.2E-07 46.4 3.2 23 13-35 9-31 (233)
421 1n0w_A DNA repair protein RAD5 96.1 0.0032 1.1E-07 46.5 3.1 22 15-36 26-47 (243)
422 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0033 1.1E-07 43.1 2.8 19 16-34 26-44 (149)
423 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0046 1.6E-07 51.6 4.0 23 15-37 49-71 (538)
424 4dzz_A Plasmid partitioning pr 96.1 0.013 4.5E-07 42.0 6.1 85 62-153 76-162 (206)
425 3ozx_A RNAse L inhibitor; ATP 96.0 0.0043 1.5E-07 51.8 3.7 23 15-37 27-49 (538)
426 3euj_A Chromosome partition pr 96.0 0.0035 1.2E-07 51.5 3.1 21 15-35 31-51 (483)
427 2dpy_A FLII, flagellum-specifi 96.0 0.0035 1.2E-07 50.9 3.1 23 15-37 159-181 (438)
428 3t15_A Ribulose bisphosphate c 96.0 0.005 1.7E-07 47.2 3.7 27 11-37 34-60 (293)
429 1q3t_A Cytidylate kinase; nucl 96.0 0.0043 1.5E-07 45.9 3.3 26 10-35 13-38 (236)
430 1ltq_A Polynucleotide kinase; 96.0 0.0038 1.3E-07 47.9 3.1 22 14-35 3-24 (301)
431 1svm_A Large T antigen; AAA+ f 96.0 0.0037 1.3E-07 49.7 3.0 22 14-35 170-191 (377)
432 3j16_B RLI1P; ribosome recycli 96.0 0.005 1.7E-07 52.1 3.8 24 15-38 105-128 (608)
433 2f6r_A COA synthase, bifunctio 96.0 0.0043 1.5E-07 47.3 3.1 23 13-35 75-97 (281)
434 3b60_A Lipid A export ATP-bind 95.9 0.0038 1.3E-07 52.6 3.0 23 15-37 371-393 (582)
435 1njg_A DNA polymerase III subu 95.9 0.0044 1.5E-07 45.3 3.0 22 15-36 47-68 (250)
436 3n70_A Transport activator; si 95.9 0.0054 1.9E-07 41.7 3.2 25 13-37 24-48 (145)
437 3b5x_A Lipid A export ATP-bind 95.9 0.0043 1.5E-07 52.3 3.1 23 15-37 371-393 (582)
438 3h4m_A Proteasome-activating n 95.9 0.0046 1.6E-07 46.9 3.0 24 13-36 51-74 (285)
439 3b9p_A CG5977-PA, isoform A; A 95.9 0.0046 1.6E-07 47.3 2.9 24 13-36 54-77 (297)
440 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.005 1.7E-07 46.0 3.1 24 13-36 39-62 (262)
441 2yl4_A ATP-binding cassette SU 95.8 0.0039 1.3E-07 52.7 2.6 23 15-37 372-394 (595)
442 3bk7_A ABC transporter ATP-bin 95.8 0.0066 2.3E-07 51.4 3.9 23 15-37 119-141 (607)
443 1tue_A Replication protein E1; 95.8 0.0043 1.5E-07 44.9 2.4 22 15-36 60-81 (212)
444 2px0_A Flagellar biosynthesis 95.8 0.0047 1.6E-07 47.5 2.8 85 62-156 183-273 (296)
445 3gmt_A Adenylate kinase; ssgci 95.8 0.006 2.1E-07 45.0 3.2 25 11-35 6-30 (230)
446 2qmh_A HPR kinase/phosphorylas 95.8 0.0059 2E-07 43.9 3.1 24 14-37 35-58 (205)
447 3cf0_A Transitional endoplasmi 95.8 0.0051 1.8E-07 47.3 3.0 23 14-36 50-72 (301)
448 3qf4_B Uncharacterized ABC tra 95.8 0.0044 1.5E-07 52.4 2.8 23 15-37 383-405 (598)
449 4a82_A Cystic fibrosis transme 95.8 0.0037 1.3E-07 52.6 2.3 23 15-37 369-391 (578)
450 1nlf_A Regulatory protein REPA 95.8 0.005 1.7E-07 46.8 2.8 22 15-36 32-53 (279)
451 1l8q_A Chromosomal replication 95.8 0.0054 1.8E-07 47.6 3.0 24 14-37 38-61 (324)
452 1vma_A Cell division protein F 95.8 0.0058 2E-07 47.2 3.1 86 62-157 187-284 (306)
453 3ld9_A DTMP kinase, thymidylat 95.7 0.0076 2.6E-07 44.3 3.5 31 6-36 14-44 (223)
454 3ozx_A RNAse L inhibitor; ATP 95.7 0.0072 2.5E-07 50.4 3.7 24 15-38 296-319 (538)
455 1yqt_A RNAse L inhibitor; ATP- 95.7 0.008 2.7E-07 50.2 4.0 24 15-38 314-337 (538)
456 3ake_A Cytidylate kinase; CMP 95.7 0.0064 2.2E-07 43.7 3.0 21 15-35 4-24 (208)
457 3bk7_A ABC transporter ATP-bin 95.7 0.0073 2.5E-07 51.1 3.7 24 15-38 384-407 (607)
458 3syl_A Protein CBBX; photosynt 95.7 0.0073 2.5E-07 46.4 3.5 25 12-36 66-90 (309)
459 3zvl_A Bifunctional polynucleo 95.7 0.0061 2.1E-07 49.2 3.1 24 13-36 258-281 (416)
460 3qf4_A ABC transporter, ATP-bi 95.7 0.0049 1.7E-07 52.0 2.6 22 15-36 371-392 (587)
461 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0064 2.2E-07 48.2 3.0 21 13-34 24-44 (365)
462 2qby_A CDC6 homolog 1, cell di 95.5 0.0067 2.3E-07 47.8 2.8 23 14-36 46-68 (386)
463 1d2n_A N-ethylmaleimide-sensit 95.5 0.011 3.7E-07 44.6 3.8 26 11-36 62-87 (272)
464 1ofh_A ATP-dependent HSL prote 95.5 0.0079 2.7E-07 46.0 3.1 23 14-36 51-73 (310)
465 3j16_B RLI1P; ribosome recycli 95.5 0.0097 3.3E-07 50.4 3.7 23 16-38 381-403 (608)
466 1p5z_B DCK, deoxycytidine kina 95.5 0.0074 2.5E-07 45.4 2.7 25 12-36 23-47 (263)
467 3crm_A TRNA delta(2)-isopenten 95.5 0.0084 2.9E-07 46.6 3.0 23 14-36 6-28 (323)
468 1fnn_A CDC6P, cell division co 95.5 0.0081 2.8E-07 47.5 3.1 23 15-37 46-68 (389)
469 3d3q_A TRNA delta(2)-isopenten 95.5 0.0084 2.9E-07 46.9 3.0 23 14-36 8-30 (340)
470 4fcw_A Chaperone protein CLPB; 95.5 0.013 4.3E-07 45.0 4.0 24 14-37 48-71 (311)
471 4b4t_K 26S protease regulatory 95.4 0.0086 2.9E-07 48.4 3.1 23 14-36 207-229 (428)
472 1sxj_C Activator 1 40 kDa subu 95.4 0.0084 2.9E-07 46.9 3.0 23 15-37 48-70 (340)
473 2ga8_A Hypothetical 39.9 kDa p 95.4 0.011 3.8E-07 46.5 3.5 23 13-35 24-46 (359)
474 2dr3_A UPF0273 protein PH0284; 95.4 0.0086 2.9E-07 44.2 2.8 22 15-36 25-46 (247)
475 1pzn_A RAD51, DNA repair and r 95.4 0.0082 2.8E-07 47.3 2.8 23 15-37 133-155 (349)
476 3cwq_A Para family chromosome 95.4 0.081 2.8E-06 38.2 7.9 85 62-153 68-153 (209)
477 3exa_A TRNA delta(2)-isopenten 95.4 0.01 3.5E-07 45.9 3.2 22 15-36 5-26 (322)
478 4b4t_M 26S protease regulatory 95.3 0.0094 3.2E-07 48.2 3.1 24 13-36 215-238 (434)
479 1a7j_A Phosphoribulokinase; tr 95.3 0.0063 2.2E-07 46.6 1.9 22 14-35 6-27 (290)
480 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.7E-07 46.2 3.1 22 15-36 42-63 (339)
481 2iw3_A Elongation factor 3A; a 95.3 0.011 3.9E-07 52.5 3.6 24 15-38 463-486 (986)
482 3eie_A Vacuolar protein sortin 95.3 0.011 3.7E-07 45.9 3.2 24 13-36 51-74 (322)
483 4b4t_L 26S protease subunit RP 95.3 0.01 3.6E-07 48.0 3.1 24 13-36 215-238 (437)
484 3qks_A DNA double-strand break 95.2 0.012 3.9E-07 42.6 3.0 19 16-34 26-44 (203)
485 2qgz_A Helicase loader, putati 95.2 0.012 4.1E-07 45.5 3.2 24 13-36 152-175 (308)
486 2r62_A Cell division protease 95.2 0.0048 1.6E-07 46.4 0.9 22 15-36 46-67 (268)
487 3tqf_A HPR(Ser) kinase; transf 95.2 0.013 4.5E-07 41.1 3.0 24 14-37 17-40 (181)
488 3ea0_A ATPase, para family; al 95.2 0.14 4.6E-06 37.7 8.8 87 62-156 119-205 (245)
489 1sxj_D Activator 1 41 kDa subu 95.2 0.011 3.8E-07 46.1 3.0 21 16-36 61-81 (353)
490 2v1u_A Cell division control p 95.2 0.0095 3.2E-07 47.0 2.6 24 13-36 44-67 (387)
491 1c9k_A COBU, adenosylcobinamid 95.2 0.012 4.2E-07 41.6 2.9 21 16-36 2-22 (180)
492 3foz_A TRNA delta(2)-isopenten 95.2 0.012 4.1E-07 45.4 3.0 23 14-36 11-33 (316)
493 4edh_A DTMP kinase, thymidylat 95.1 0.013 4.4E-07 42.8 3.0 24 13-36 6-29 (213)
494 2ocp_A DGK, deoxyguanosine kin 95.1 0.012 4E-07 43.6 2.8 23 14-36 3-25 (241)
495 2iw3_A Elongation factor 3A; a 95.1 0.0067 2.3E-07 53.9 1.7 23 15-37 701-723 (986)
496 4b4t_J 26S protease regulatory 95.1 0.012 4.2E-07 47.1 3.0 23 14-36 183-205 (405)
497 2z4s_A Chromosomal replication 95.1 0.012 4E-07 47.9 3.0 23 14-36 131-153 (440)
498 3uk6_A RUVB-like 2; hexameric 95.1 0.011 3.9E-07 46.5 2.8 24 14-37 71-94 (368)
499 3cr8_A Sulfate adenylyltranfer 95.1 0.007 2.4E-07 50.6 1.6 26 12-37 368-393 (552)
500 4f4c_A Multidrug resistance pr 95.1 0.0078 2.7E-07 55.5 2.0 22 15-36 1107-1128(1321)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.8e-44 Score=266.17 Aligned_cols=170 Identities=35% Similarity=0.659 Sum_probs=146.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....+||+|+|.+|||||||+++|+.+.|...+.+|.+.++....+..++..+.+.+|||+|+++|..++..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34457999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
+++|||++++.||+.+..|+..+......+.|++||+||+|+.+.+.++.+++.++++.++++|+++||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999877778899999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027894 169 EVLTQIYHVV 178 (217)
Q Consensus 169 ~i~~~~~~~~ 178 (217)
.|.+.+....
T Consensus 169 ~i~~~i~~~~ 178 (216)
T 4dkx_A 169 RVAAALPGME 178 (216)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHhhh
Confidence 9998886543
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=238.61 Aligned_cols=215 Identities=56% Similarity=0.935 Sum_probs=150.8
Q ss_pred CccccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhH
Q 027894 1 MAAYRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
|+...-....+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44444445567889999999999999999999999998888888888888888888898889999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999999888766568999999999999877778888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccccCCCCCCC-------CCCCCceee-ecCCCCccCccccCcc
Q 027894 161 MNVENAFTEVLTQIYHVVSRKALDIGGDPA-------ALPKGQTIN-VGGKDDVSAVKKVGCC 215 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~c~ 215 (217)
.|++++|++|.+.+.+.....+.+++.+++ ..+.++++. +..+...+..++++||
T Consensus 161 ~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 223 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC------------------------CCBCC----------------
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCchhcccccccccccccCCCcccccccccccccccCCCCC
Confidence 999999999999999888777766633111 112345555 3322222345677886
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=226.16 Aligned_cols=196 Identities=30% Similarity=0.468 Sum_probs=151.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 445679999999999999999999999988777777766554 4556678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988877653 589999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCccccCccCC
Q 027894 168 TEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVKKVGCCNA 217 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 217 (217)
++|.+.+.+........... ....+..++.+|++||.|
T Consensus 169 ~~l~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~Cc~~ 206 (206)
T 2bov_A 169 FDLMREIRARKMEDSKEKNG------------KKKRKSLAKRIRERCCIL 206 (206)
T ss_dssp HHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHHccccccccccC------------cccccchhhccccceecC
Confidence 99999998765433222111 112222344566689987
No 4
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=7.4e-37 Score=226.35 Aligned_cols=176 Identities=48% Similarity=0.817 Sum_probs=160.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 45778999999999999999999999999988888888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877667899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccC
Q 027894 169 EVLTQIYHVVSRKALD 184 (217)
Q Consensus 169 ~i~~~~~~~~~~~~~~ 184 (217)
+|.+.+.+........
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998877655443
No 5
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.8e-35 Score=214.32 Aligned_cols=178 Identities=47% Similarity=0.770 Sum_probs=160.8
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.+...+..++|+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 34456788999999999999999999999999888888888888888888889988999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999999888776667899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 027894 166 AFTEVLTQIYHVVSRKAL 183 (217)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~ 183 (217)
+|+++.+.+.+.....+.
T Consensus 163 l~~~l~~~~~~~~~~~~~ 180 (186)
T 2bme_A 163 AFVQCARKILNKIESGEL 180 (186)
T ss_dssp HHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHhhhcCC
Confidence 999999999987765544
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=214.14 Aligned_cols=175 Identities=47% Similarity=0.776 Sum_probs=159.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.+..+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34457789999999999999999999999999888888989999989998999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877678999999999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 027894 167 FTEVLTQIYHVVSRK 181 (217)
Q Consensus 167 ~~~i~~~~~~~~~~~ 181 (217)
|++|.+.+.+.....
T Consensus 170 ~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 170 FMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998876544
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-35 Score=216.92 Aligned_cols=173 Identities=42% Similarity=0.750 Sum_probs=157.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+...+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999888888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888776678999999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027894 167 FTEVLTQIYHVVS 179 (217)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (217)
|++|.+.+.+...
T Consensus 180 ~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 180 FLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=216.73 Aligned_cols=173 Identities=47% Similarity=0.781 Sum_probs=147.9
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.++..+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 34567788999999999999999999999999887777888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 164 (217)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||+++.|++
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999998876667899999999999987777888999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027894 165 NAFTEVLTQIYHVV 178 (217)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (217)
++|++|.+.+.+..
T Consensus 182 ~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 182 EAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1e-35 Score=216.18 Aligned_cols=173 Identities=45% Similarity=0.793 Sum_probs=129.3
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 45788999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988876657899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 027894 169 EVLTQIYHVVSRK 181 (217)
Q Consensus 169 ~i~~~~~~~~~~~ 181 (217)
+|.+.+.+...+.
T Consensus 164 ~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 164 TLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999998876544
No 10
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=5.5e-35 Score=211.20 Aligned_cols=173 Identities=51% Similarity=0.846 Sum_probs=154.5
Q ss_pred ccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhh
Q 027894 4 YRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYY 83 (217)
Q Consensus 4 ~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 83 (217)
.......+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++
T Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 85 (179)
T 1z0f_A 6 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 85 (179)
T ss_dssp -----CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHH
T ss_pred CCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHh
Confidence 33445677889999999999999999999999998887778888888888888888889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
+.+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|+
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV 165 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999888776678999999999999877778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYH 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+++|+++.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5.8e-35 Score=213.78 Aligned_cols=174 Identities=49% Similarity=0.819 Sum_probs=155.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.......+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 44567889999999999999999999999998887778888888888888898889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988766678999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 027894 167 FTEVLTQIYHVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|++|.+.+.+...+
T Consensus 175 ~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 175 FINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877654
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.1e-34 Score=211.94 Aligned_cols=173 Identities=40% Similarity=0.712 Sum_probs=157.5
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.+...+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 34556788999999999999999999999999888777888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++..+++...+++++++||+++.|+++
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999999988876656899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027894 166 AFTEVLTQIYHVV 178 (217)
Q Consensus 166 ~~~~i~~~~~~~~ 178 (217)
+|++|.+.+.+..
T Consensus 175 l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 175 VFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 13
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-34 Score=213.34 Aligned_cols=174 Identities=39% Similarity=0.712 Sum_probs=158.7
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
...+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34567899999999999999999999999988888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999998887665689999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027894 168 TEVLTQIYHVVSRK 181 (217)
Q Consensus 168 ~~i~~~~~~~~~~~ 181 (217)
++|.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998776544
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=211.56 Aligned_cols=173 Identities=65% Similarity=1.016 Sum_probs=157.9
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.++.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 44567789999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988766678999999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027894 167 FTEVLTQIYHVVS 179 (217)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (217)
|++|.+.+.+...
T Consensus 179 ~~~l~~~i~~~~~ 191 (193)
T 2oil_A 179 FETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=209.78 Aligned_cols=173 Identities=47% Similarity=0.749 Sum_probs=156.0
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
...+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 45678899999999999999999999999988888888888898888989998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999999999999887765 689999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027894 168 TEVLTQIYHVVSRK 181 (217)
Q Consensus 168 ~~i~~~~~~~~~~~ 181 (217)
++|.+.+.+...+.
T Consensus 163 ~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 163 NCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998877554
No 16
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=215.20 Aligned_cols=176 Identities=46% Similarity=0.750 Sum_probs=148.9
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+.+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 34677899999999999999999999999988888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999988877666789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 027894 168 TEVLTQIYHVVSRKAL 183 (217)
Q Consensus 168 ~~i~~~~~~~~~~~~~ 183 (217)
++|.+.+.+.....+.
T Consensus 180 ~~l~~~i~~~~~~~~~ 195 (200)
T 2o52_A 180 LKCARTILNKIDSGEL 195 (200)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999987765543
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.6e-34 Score=209.85 Aligned_cols=172 Identities=31% Similarity=0.503 Sum_probs=151.4
Q ss_pred ccCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhh
Q 027894 4 YRADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYY 83 (217)
Q Consensus 4 ~~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 83 (217)
..........+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++
T Consensus 9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 87 (183)
T 3kkq_A 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 87 (183)
T ss_dssp -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHH
T ss_pred ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHH
Confidence 33445566789999999999999999999999988888878877666 66677888889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC-CCC
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL-ESM 161 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~ 161 (217)
+.+|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 99999999999999999999999988886533 3679999999999998888899999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQIYH 176 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~ 176 (217)
|++++|++|.+.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998865
No 18
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.4e-35 Score=215.90 Aligned_cols=171 Identities=39% Similarity=0.673 Sum_probs=150.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCCCHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESMNVE 164 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~ 164 (217)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999887765432 478999999999997 45567788888887 678899999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 027894 165 NAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~ 181 (217)
++|++|.+.+.+.....
T Consensus 164 ~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 164 QAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999998877544
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.7e-34 Score=208.12 Aligned_cols=171 Identities=42% Similarity=0.734 Sum_probs=152.9
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567899999999999999999999999988887788888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887766789999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
++|.+.+.+..
T Consensus 167 ~~l~~~~~~~~ 177 (181)
T 2efe_B 167 YEIARRLPRVQ 177 (181)
T ss_dssp HHHHHTCC---
T ss_pred HHHHHHHHhcC
Confidence 99998775543
No 20
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-35 Score=216.36 Aligned_cols=173 Identities=40% Similarity=0.723 Sum_probs=158.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+.+.+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 44567889999999999999999999999998888878888888888888888788999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999998876678999999999999887888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 027894 167 FTEVLTQIYHVVS 179 (217)
Q Consensus 167 ~~~i~~~~~~~~~ 179 (217)
|++|.+.+.+...
T Consensus 177 ~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 177 FERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
No 21
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=211.07 Aligned_cols=170 Identities=38% Similarity=0.709 Sum_probs=147.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+++.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 44567889999999999999999999999988877788888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVEN 165 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~ 165 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++... +++++++||+++.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999998888776678999999999999877778888888998874 78999999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 166 AFTEVLTQIYH 176 (217)
Q Consensus 166 ~~~~i~~~~~~ 176 (217)
+|++|.+.+.+
T Consensus 180 l~~~l~~~i~~ 190 (192)
T 2il1_A 180 IFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.3e-34 Score=207.74 Aligned_cols=166 Identities=38% Similarity=0.669 Sum_probs=144.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999998887888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999988887655567999999999999877788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027894 170 VLTQIY 175 (217)
Q Consensus 170 i~~~~~ 175 (217)
|.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5e-34 Score=204.39 Aligned_cols=164 Identities=45% Similarity=0.757 Sum_probs=150.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999999988878888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988887666789999999999998777788888999999999999999999999999999999
Q ss_pred HHHH
Q 027894 171 LTQI 174 (217)
Q Consensus 171 ~~~~ 174 (217)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8765
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1e-33 Score=202.84 Aligned_cols=165 Identities=40% Similarity=0.735 Sum_probs=152.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+....+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888898889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
++|+|++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHH
Q 027894 170 VLTQI 174 (217)
Q Consensus 170 i~~~~ 174 (217)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-34 Score=210.66 Aligned_cols=170 Identities=39% Similarity=0.690 Sum_probs=152.4
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.+..+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34567789999999999999999999999998777788888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|++++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 99999999999999999999999988776678999999999999876778889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027894 167 FTEVLTQIYH 176 (217)
Q Consensus 167 ~~~i~~~~~~ 176 (217)
|++|.+.+.+
T Consensus 177 ~~~l~~~i~~ 186 (192)
T 2fg5_A 177 FQGISRQIPP 186 (192)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-34 Score=205.62 Aligned_cols=172 Identities=42% Similarity=0.704 Sum_probs=145.6
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.+..+..++|+++|.+|+|||||+++|.+..+.. .+.++.+.++....+..++..+.+.+|||||++.+...+..+++.
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 3456778999999999999999999999998853 566778888887777888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|+++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999988876657899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027894 166 AFTEVLTQIYHVV 178 (217)
Q Consensus 166 ~~~~i~~~~~~~~ 178 (217)
+|+++.+.+.+..
T Consensus 164 l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 164 AFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886443
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.6e-34 Score=205.94 Aligned_cols=166 Identities=43% Similarity=0.750 Sum_probs=144.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888777888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++...++...+++++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999888776678999999999999 4456778888999999999999999999999999999999
Q ss_pred HHHHHHh
Q 027894 172 TQIYHVV 178 (217)
Q Consensus 172 ~~~~~~~ 178 (217)
+.+.+..
T Consensus 161 ~~~~~~~ 167 (170)
T 1g16_A 161 KLIQEKI 167 (170)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9887643
No 28
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.4e-34 Score=210.49 Aligned_cols=177 Identities=41% Similarity=0.728 Sum_probs=153.6
Q ss_pred cCCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894 5 RADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
.+....+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus 12 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred CCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 33445667899999999999999999999999988888888888888888888998899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
.+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++...++...+++++++||+++.|++
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999998888766568999999999999 445677888889999899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 027894 165 NAFTEVLTQIYHVVSRKA 182 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~ 182 (217)
++|++|.+.+.+......
T Consensus 171 ~l~~~l~~~~~~~~~~~~ 188 (213)
T 3cph_A 171 EIFFTLAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999987765443
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.5e-33 Score=206.24 Aligned_cols=175 Identities=39% Similarity=0.682 Sum_probs=155.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEE-EEEEEECCe---------EEEEEEEeCCCchhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA-TRSIRVEDK---------IVKAQIWDTAGQERYR 76 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~ 76 (217)
+.+.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++. ...+...+. .+.+.+|||||++.+.
T Consensus 5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 345678899999999999999999999999988877788888777 556666655 7899999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
..+..+++.+|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999988877654 679999999999998777788888999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894 156 SALESMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
||+++.|++++|++|.+.+.+...+.
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999998776543
No 30
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=4.2e-34 Score=213.18 Aligned_cols=175 Identities=39% Similarity=0.683 Sum_probs=153.5
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe----------EEEEEEEeCCCchhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK----------IVKAQIWDTAGQERYR 76 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~ 76 (217)
....+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.+|||||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 345678899999999999999999999999887777777777777777766665 6889999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEe
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
..+..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++..+++...+++++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 9999999999999999999999999999999888766554 679999999999998777788899999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcc
Q 027894 156 SALESMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
||+++.|++++|++|.+.+.+.....
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~~~ 204 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRMEQC 204 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998766443
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=8.5e-34 Score=203.20 Aligned_cols=163 Identities=40% Similarity=0.687 Sum_probs=148.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888788888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc---ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL---CAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
|+|++++.+++.+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998888776678999999999999754 56788888999999999999999999999999999
Q ss_pred HHHHHH
Q 027894 169 EVLTQI 174 (217)
Q Consensus 169 ~i~~~~ 174 (217)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 32
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.8e-33 Score=204.97 Aligned_cols=170 Identities=31% Similarity=0.495 Sum_probs=146.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999988777766664 444556668888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .....++...++...+++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999888877543 6899999999999974 467788899999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 027894 170 VLTQIYHVVSRKA 182 (217)
Q Consensus 170 i~~~~~~~~~~~~ 182 (217)
|.+.+.+...+..
T Consensus 160 l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 160 LVREIRKHKEKMS 172 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcc
Confidence 9999988876553
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5e-34 Score=206.14 Aligned_cols=166 Identities=37% Similarity=0.687 Sum_probs=151.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999988888888888888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877655689999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027894 171 LTQIYH 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
.+.+.+
T Consensus 172 ~~~~~~ 177 (179)
T 2y8e_A 172 AAALPG 177 (179)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 886643
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=209.76 Aligned_cols=172 Identities=27% Similarity=0.329 Sum_probs=144.1
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-hhHhhhcC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-ITSAYYRG 85 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ 85 (217)
+.+.+..++|+++|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 44566789999999999999999999986554433445555566666777899899999999999987664 77788899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence 9999999999999999999999988876543 579999999999998777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027894 165 NAFTEVLTQIYHVV 178 (217)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (217)
++|+++++.+.+..
T Consensus 177 ~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 177 ELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886543
No 35
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=203.18 Aligned_cols=169 Identities=30% Similarity=0.388 Sum_probs=137.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh--hhhhhHhhhcCCcE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--YRAITSAYYRGAVG 88 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~ 88 (217)
+..++|+++|.+|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35699999999999999999999998876544 4556666777778888889999999999887 56667788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 2579999999999998777788888889999899999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 027894 168 TEVLTQIYHVVSR 180 (217)
Q Consensus 168 ~~i~~~~~~~~~~ 180 (217)
++|.+.+...+..
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999998776543
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7.3e-34 Score=205.97 Aligned_cols=167 Identities=33% Similarity=0.427 Sum_probs=149.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988888878877776 666778888899999999999999988999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999988865543 57999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027894 170 VLTQIYHVV 178 (217)
Q Consensus 170 i~~~~~~~~ 178 (217)
+.+.+.+..
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999887654
No 37
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-34 Score=211.42 Aligned_cols=165 Identities=32% Similarity=0.427 Sum_probs=141.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 345699999999999999999999999887766676664443 4455788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999998888777665432 4789999999999975 4567788888999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027894 168 TEVLTQIYH 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
++|.+.+.+
T Consensus 163 ~~l~~~~~~ 171 (199)
T 2gf0_A 163 QELLTLETR 171 (199)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHHHhh
Confidence 999887654
No 38
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=5.5e-34 Score=203.90 Aligned_cols=165 Identities=36% Similarity=0.625 Sum_probs=150.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999988887655 679999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027894 171 LTQIYH 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988753
No 39
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.4e-33 Score=206.03 Aligned_cols=168 Identities=36% Similarity=0.658 Sum_probs=147.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhhhcCCc
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR-AITSAYYRGAV 87 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d 87 (217)
.....+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999999888888888888888888889888999999999999988 88899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC---CCH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES---MNV 163 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v 163 (217)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999998887664 368999999999999877778889999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYH 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+++|++|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.9e-33 Score=201.29 Aligned_cols=167 Identities=39% Similarity=0.690 Sum_probs=146.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34568999999999999999999999999888888888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-HcCCcEEEeccCCCCCH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-RENTFFMETSALESMNV 163 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 163 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999888765443 678999999999997 45677888888888 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYH 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+++|+++.+.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.7e-33 Score=202.61 Aligned_cols=169 Identities=29% Similarity=0.464 Sum_probs=150.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4456799999999999999999999999888777777776665 566678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999998887443 33679999999999998777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
++|.+.+.+..
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999987655
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.1e-33 Score=202.74 Aligned_cols=165 Identities=28% Similarity=0.346 Sum_probs=134.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA-ITSAYYRGAVGALL 91 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~ 91 (217)
.+||+++|.+|+|||||+++|.+.........+.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877666666667777788888899999999999999988865 67778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877654 489999999999998778899999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027894 171 LTQIYHV 177 (217)
Q Consensus 171 ~~~~~~~ 177 (217)
.+.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988754
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-33 Score=203.18 Aligned_cols=170 Identities=45% Similarity=0.737 Sum_probs=153.2
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34456799999999999999999999999988888888888888888888998999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..++...++...+++++++||+++.|++++
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 99999999999999999999999877653 5799999999999943 567788889999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027894 167 FTEVLTQIYHVV 178 (217)
Q Consensus 167 ~~~i~~~~~~~~ 178 (217)
|++|.+.+.+..
T Consensus 169 ~~~l~~~~~~~~ 180 (195)
T 1x3s_A 169 FEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhhh
Confidence 999999987543
No 44
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1e-33 Score=210.83 Aligned_cols=171 Identities=24% Similarity=0.422 Sum_probs=145.4
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.++.....+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.
T Consensus 20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 344556789999999999999999999999999888878887666 4455677778999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHH-HHHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-c
Q 027894 86 AVGALLVYDVTRHVTFEN-VERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-F 151 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~ 151 (217)
+|++++|||++++.+++. +..|+..+.... .+.|+++|+||+|+.++ +.+..+++..++...++ +
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 999999999999999998 688999888765 68999999999999753 57889999999999999 8
Q ss_pred EEEeccCCCCC-HHHHHHHHHHHHHHHh
Q 027894 152 FMETSALESMN-VENAFTEVLTQIYHVV 178 (217)
Q Consensus 152 ~~~~Sa~~~~~-v~~~~~~i~~~~~~~~ 178 (217)
|+++||+++.| ++++|+++.+.+....
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 99999999998 9999999999887554
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.8e-34 Score=205.80 Aligned_cols=167 Identities=32% Similarity=0.493 Sum_probs=146.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-KIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4579999999999999999999999988766667877778888887876 678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCC--CCCc-EEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHTD--SNIV-IMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
++|||++++.+++.+..|+..+..... .+.| +++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999888766421 2445 8899999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 167 FTEVLTQIYHV 177 (217)
Q Consensus 167 ~~~i~~~~~~~ 177 (217)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (178)
T 2hxs_A 164 FQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=207.67 Aligned_cols=167 Identities=38% Similarity=0.628 Sum_probs=138.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 44567999999999999999999999999877777888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC------CcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR------HLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++...++...+++++++||+++.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999988877665689999999999996 3456778888999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 v~~~~~~i~~~~~ 175 (217)
++++|++|.+.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 47
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.3e-33 Score=200.98 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=143.2
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......+||+++|.+|||||||+++|+++.+...+.++. . .....+.+++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 445678999999999999999999999999877776663 3 334677789999999999999998776 678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCC--CcccCCHHHHHHHHHHcC-CcEEEeccCCCCCH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLR--HLCAVSTEDAKAFAEREN-TFFMETSALESMNV 163 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 163 (217)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++...+ ++|+++||+++.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987654 679999999999994 456788899999999987 89999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027894 164 ENAFTEVLTQIYHVVS 179 (217)
Q Consensus 164 ~~~~~~i~~~~~~~~~ 179 (217)
+++|+++.+.+.+.+.
T Consensus 168 ~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 168 ERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887653
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=208.54 Aligned_cols=169 Identities=31% Similarity=0.447 Sum_probs=144.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345689999999999999999999999998887777777666 5555566677889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999877643 578999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
++|.+.+.+..
T Consensus 179 ~~l~~~i~~~~ 189 (201)
T 3oes_A 179 TKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.2e-33 Score=199.11 Aligned_cols=163 Identities=33% Similarity=0.403 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.+||+++|.+|+|||||+++|.+....... ++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999987654333 4444444 34556788899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887653 36899999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027894 172 TQIYHV 177 (217)
Q Consensus 172 ~~~~~~ 177 (217)
+.+.+.
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.3e-32 Score=202.86 Aligned_cols=166 Identities=37% Similarity=0.672 Sum_probs=147.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeE----------------------------
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKI---------------------------- 61 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 61 (217)
.+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999999888888888888888777776655
Q ss_pred ---------EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 62 ---------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 62 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cc
Confidence 889999999999999999999999999999999999999999999998887655 399999999999 55
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 133 LCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
.+.+..+++.+++...+++++++||+++.|++++|++|.+.+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 5677888999999999999999999999999999999999988654
No 51
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.2e-33 Score=203.79 Aligned_cols=168 Identities=25% Similarity=0.478 Sum_probs=147.1
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
......+||+++|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 345678999999999999999999999999877777877666554 5667888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc--ccCCHHHHHHHHHHcCCc-EEEeccCCCCCH
Q 027894 88 GALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL--CAVSTEDAKAFAERENTF-FMETSALESMNV 163 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 163 (217)
++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.++ +.+..+++..++...++. ++++||+++.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999997 67888887654 67999999999999753 667889999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYHV 177 (217)
Q Consensus 164 ~~~~~~i~~~~~~~ 177 (217)
+++|++|.+.+.+.
T Consensus 176 ~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 176 NEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 52
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=204.55 Aligned_cols=165 Identities=26% Similarity=0.396 Sum_probs=141.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....+||+++|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999998877778877665 345667888899999999999888764 668899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccC---CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc-CCCCCHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHT---DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA-LESMNVE 164 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~ 164 (217)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+++++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999998887653 157999999999999877788899999999999999999999 8999999
Q ss_pred HHHHHHHHHHH
Q 027894 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++|++|++.+.
T Consensus 175 ~lf~~l~~~i~ 185 (187)
T 3c5c_A 175 HVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=8.6e-33 Score=197.47 Aligned_cols=163 Identities=34% Similarity=0.530 Sum_probs=142.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999988777767665554 3455678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999888876553 579999999999998777788899999999999999999999999999999999
Q ss_pred HHHHH
Q 027894 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 54
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=204.05 Aligned_cols=172 Identities=30% Similarity=0.461 Sum_probs=139.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
.......++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 33456789999999999999999999999888777767765444 45566788889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC------------cccCCHHHHHHHHHHcCC-cE
Q 027894 87 VGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH------------LCAVSTEDAKAFAERENT-FF 152 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 152 (217)
|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..++...++...++ ++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999986 7888887665 5899999999999965 256778889999998887 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 153 METSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 153 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
+++||+++.|++++|++|.+.+.+...+
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999877654
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.5e-33 Score=202.24 Aligned_cols=169 Identities=37% Similarity=0.665 Sum_probs=134.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999999888887888877877777776 556889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC----CCCcEEEEEeCCCCCC-cccCCHHHHHHHHH-HcCCcEEEeccCCCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD----SNIVIMLVGNKADLRH-LCAVSTEDAKAFAE-RENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 162 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++...++. ..+++++++||+++.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999888765432 6789999999999953 34567888888887 5678999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027894 163 VENAFTEVLTQIYHVV 178 (217)
Q Consensus 163 v~~~~~~i~~~~~~~~ 178 (217)
++++|++|.+.+.+.+
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988765
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.4e-32 Score=199.79 Aligned_cols=169 Identities=33% Similarity=0.497 Sum_probs=148.1
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999988777767665554 4455678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999888876553 479999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
++|.+.+.+.+
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988665
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.3e-32 Score=198.85 Aligned_cols=164 Identities=20% Similarity=0.335 Sum_probs=138.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+|||||++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999998876 556666444 56677888889999999999876 35778899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhcc---CCCCCcEEEEEeCCCCC--CcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGH---TDSNIVIMLVGNKADLR--HLCAVSTEDAKAFAERE-NTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~ 164 (217)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+. ..+.+..+++.+++... +++++++||+++.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999999876555443 23679999999999994 45677888888888876 6899999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 027894 165 NAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 165 ~~~~~i~~~~~~~~~~~ 181 (217)
++|+++.+.+.+.....
T Consensus 158 ~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998876544
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.1e-32 Score=197.03 Aligned_cols=162 Identities=31% Similarity=0.513 Sum_probs=142.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999887777777765543 4556777788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-NTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++... +++++++||+++.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999998888876643 367999999999999877778888899999887 7899999999999999999999
Q ss_pred HHHHH
Q 027894 171 LTQIY 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98763
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.1e-32 Score=196.72 Aligned_cols=163 Identities=31% Similarity=0.495 Sum_probs=144.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988777766665443 56677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999998888766543 6799999999999987778888889999999999999999999999999999999
Q ss_pred HHHHH
Q 027894 172 TQIYH 176 (217)
Q Consensus 172 ~~~~~ 176 (217)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=203.42 Aligned_cols=169 Identities=28% Similarity=0.365 Sum_probs=139.9
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcC--CCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhhhcC
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRAITSAYYRG 85 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 85 (217)
.....+||+++|.+|||||||+++|.+... ...+ ++.+.++....+.+++..+.+.+|||+|++. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445679999999999999999999997543 3322 3455666667777889889999999999876 45566777889
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|+|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988877543 2579999999999998767788888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027894 165 NAFTEVLTQIYHVV 178 (217)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (217)
++|++|.+.+....
T Consensus 192 elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 192 ELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886543
No 61
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-33 Score=209.03 Aligned_cols=167 Identities=30% Similarity=0.531 Sum_probs=142.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999988777777776554 445567788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCccc--------CCHHHHHHHHHHcCC-cEEEeccCCC
Q 027894 91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCA--------VSTEDAKAFAERENT-FFMETSALES 160 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (217)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+... +..+++..++...++ +++++||+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 7888887665 5899999999999965433 377888899988886 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 027894 161 MNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~~~ 179 (217)
+|++++|++|++.+.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHhhhhh
Confidence 9999999999999876543
No 62
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=201.68 Aligned_cols=167 Identities=33% Similarity=0.449 Sum_probs=146.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45679999999999999999999999998877777776555 44566788889999999999887 77788899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM-NVENAF 167 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~ 167 (217)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999988887653 2689999999999998777888899999999999999999999999 999999
Q ss_pred HHHHHHHHHHh
Q 027894 168 TEVLTQIYHVV 178 (217)
Q Consensus 168 ~~i~~~~~~~~ 178 (217)
++|.+.+.+..
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999987654
No 63
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.8e-33 Score=208.11 Aligned_cols=171 Identities=30% Similarity=0.467 Sum_probs=115.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCcccceeEEEEEEEECCe--EEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRVEDK--IVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
...++|+++|.+|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 776677777777777777878776 78999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCC-cccCCHHHHHHHHHHcCCcEEEeccCC-CC
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRH-LCAVSTEDAKAFAERENTFFMETSALE-SM 161 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 161 (217)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+++..++...+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999987765 5899999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhhcc
Q 027894 162 NVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~~~~~~ 181 (217)
|++++|++|.+.+.+...+.
T Consensus 178 gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988776543
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-32 Score=199.70 Aligned_cols=165 Identities=28% Similarity=0.466 Sum_probs=144.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999988777777776554 4456677778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEE
Q 027894 89 ALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFME 154 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 154 (217)
+++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...++ ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999987 7888887765 58999999999999653 46778889999999887 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027894 155 TSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
+||++++|++++|++|.+.++
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 65
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2e-32 Score=202.53 Aligned_cols=168 Identities=27% Similarity=0.483 Sum_probs=142.8
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+...+..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 33456789999999999999999999999998877777776655 34556677789999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcE
Q 027894 87 VGALLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFF 152 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~ 152 (217)
|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+ +++
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999999998 78888887655 57999999999999642 4577888999998887 689
Q ss_pred EEeccC-CCCCHHHHHHHHHHHHHH
Q 027894 153 METSAL-ESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 153 ~~~Sa~-~~~~v~~~~~~i~~~~~~ 176 (217)
+++||+ ++.|++++|+.|++.+..
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999998764
No 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.9e-32 Score=199.21 Aligned_cols=164 Identities=27% Similarity=0.480 Sum_probs=142.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999998777777776555 34566778889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcC-CcEEEe
Q 027894 90 LLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAEREN-TFFMET 155 (217)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 155 (217)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. +.+..+++..++..++ ++|+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 68888887655 67999999999999742 4678888999998887 789999
Q ss_pred ccC-CCCCHHHHHHHHHHHHH
Q 027894 156 SAL-ESMNVENAFTEVLTQIY 175 (217)
Q Consensus 156 Sa~-~~~~v~~~~~~i~~~~~ 175 (217)
||+ ++.|++++|+.+.+.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998875
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.2e-31 Score=195.74 Aligned_cols=170 Identities=31% Similarity=0.482 Sum_probs=135.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
+....++|+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345679999999999999999999999988776666655443 4556678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..+++...+++++++||+++.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999888876543 5799999999999976 5677888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 027894 168 TEVLTQIYHVVSR 180 (217)
Q Consensus 168 ~~i~~~~~~~~~~ 180 (217)
++|.+.+.+.+.+
T Consensus 175 ~~l~~~~~~~~~~ 187 (190)
T 3con_A 175 YTLVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876543
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=4.1e-32 Score=197.35 Aligned_cols=164 Identities=32% Similarity=0.518 Sum_probs=142.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999988777767765444 445667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEec
Q 027894 91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 6888887655 48999999999999653 46778888899998887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027894 157 ALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~~~ 176 (217)
|+++.|++++|+++.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999988763
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=202.07 Aligned_cols=167 Identities=32% Similarity=0.480 Sum_probs=124.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3579999999999999999999999888776666665443 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcCC-cEEEec
Q 027894 91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..+++..++...++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6888887655 679999999999997542 5677888999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q 027894 157 ALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
|+++.|++++|++|.+.+.+...
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999886553
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.3e-31 Score=197.56 Aligned_cols=165 Identities=30% Similarity=0.482 Sum_probs=144.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....+||+++|.+|+|||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 3467999999999999999999999999887777777666543 456788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEe
Q 027894 90 LLVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMET 155 (217)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 155 (217)
++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+... +.+..++...++...++ +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998 67888777654 58999999999999754 45778888999999888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027894 156 SALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
||+++.|++++|++|.+.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.9e-32 Score=204.33 Aligned_cols=173 Identities=29% Similarity=0.487 Sum_probs=146.8
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
......+||+++|.+|||||||+++|++..+...+.++.+.......+... +..+.+.+|||||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345578999999999999999999999988877777777777666665554 3448899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999988776667999999999999877778888888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 027894 167 FTEVLTQIYHVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|++|.+.+.+....
T Consensus 166 ~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 166 FLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHHCCTTC
T ss_pred HHHHHHHHhccccc
Confidence 99999998765543
No 72
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.4e-32 Score=201.66 Aligned_cols=171 Identities=22% Similarity=0.253 Sum_probs=138.5
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-----------CcccceeEEEEEE-EECCeEEEEEEEeCCCch
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------KSTIGVEFATRSI-RVEDKIVKAQIWDTAGQE 73 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~ 73 (217)
.....+..+||+++|.+|||||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+|||||++
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred chhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 3556678899999999999999999766553 33332 2344444443333 456677899999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894 74 RYRAITSAYYRGAVGALLVYDVT------RHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER 147 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.+...+..+++++|++++|||++ +..+++.+..|+..+... ..+.|+++|+||+|+.+ .+..+++.+++..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRDLPD--ALPVEMVRAVVDP 162 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTTSTT--CCCHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchhccc--ccCHHHHHHHHHh
Confidence 99999999999999999999999 556777777787777433 37899999999999976 4788889999999
Q ss_pred cCC-cEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 148 ENT-FFMETSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 148 ~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
.++ +++++||+++.|++++|++|.+.+.+...+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999 999999999999999999999999887643
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=213.74 Aligned_cols=167 Identities=50% Similarity=0.812 Sum_probs=142.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
..+..+||+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 45678999999999999999999999998887777888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFT 168 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 168 (217)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987777777778889999999999999999999999999
Q ss_pred HHHHHHH
Q 027894 169 EVLTQIY 175 (217)
Q Consensus 169 ~i~~~~~ 175 (217)
+|.+.+.
T Consensus 189 ~l~~~l~ 195 (199)
T 3l0i_B 189 TMAAEIK 195 (199)
T ss_dssp HHTTTTT
T ss_pred HHHHHHH
Confidence 9987664
No 74
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=7e-31 Score=193.28 Aligned_cols=172 Identities=78% Similarity=1.187 Sum_probs=151.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999999988878788888888888889999899999999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
+|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+....+++..++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998888887765544678999999999998767778888999999999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 027894 171 LTQIYHVVSRKA 182 (217)
Q Consensus 171 ~~~~~~~~~~~~ 182 (217)
.+.+.+......
T Consensus 163 ~~~~~~~~~~~~ 174 (199)
T 2f9l_A 163 LTEIYRIVSQKQ 174 (199)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHhhcc
Confidence 999987664443
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.9e-32 Score=192.76 Aligned_cols=162 Identities=31% Similarity=0.429 Sum_probs=140.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3589999999999999999999998887666666654443 445577888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999998888877765432 57899999999999877778888888999999999999999999999999999
Q ss_pred HHHHH
Q 027894 170 VLTQI 174 (217)
Q Consensus 170 i~~~~ 174 (217)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98754
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=2.5e-32 Score=204.17 Aligned_cols=171 Identities=30% Similarity=0.521 Sum_probs=150.4
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCC
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGA 86 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (217)
+......+||+++|.+|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44566789999999999999999999888887777778888888888888899999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... . .+...++...+++++++||+++.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988765 5899999999999975332 2 2566677888999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 027894 167 FTEVLTQIYHVVSR 180 (217)
Q Consensus 167 ~~~i~~~~~~~~~~ 180 (217)
|++|.+.+......
T Consensus 166 ~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 166 FLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHhCccc
Confidence 99999998765543
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.7e-31 Score=188.49 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV 92 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (217)
.++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999988776666665443 45566788889999999999999988999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 027894 93 YDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..+++...+++++++||+++.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888776543 4799999999999976 45678888999999999999999999999999999999
Q ss_pred HHHH
Q 027894 172 TQIY 175 (217)
Q Consensus 172 ~~~~ 175 (217)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-31 Score=197.30 Aligned_cols=165 Identities=32% Similarity=0.489 Sum_probs=138.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+.. .+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 346899999999999999999999999877776776665543 3667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEec
Q 027894 91 LVYDVTRHVTFENV-ERWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+... +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67888877654 58999999999999654 45677888889988887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 027894 157 ALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~~~~ 177 (217)
|+++.|++++|++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=7.9e-31 Score=192.02 Aligned_cols=167 Identities=28% Similarity=0.378 Sum_probs=136.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhhhcCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-YRAITSAYYRGAV 87 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d 87 (217)
...+||+++|.+|||||||+++|.+.. +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 356999999999999999999999643 23322 3455566667777899889999999999765 4556677888999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENA 166 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 166 (217)
++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988776543 357999999999999776778888888888888999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027894 167 FTEVLTQIYHVV 178 (217)
Q Consensus 167 ~~~i~~~~~~~~ 178 (217)
|+++.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886544
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=4.6e-31 Score=193.91 Aligned_cols=167 Identities=16% Similarity=0.270 Sum_probs=129.7
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhc
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYR 84 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (217)
.+++....++|+|+|.+|||||||+++|++..+.. .+.+|.+... ..+... .+.+.+|||||++.+...+..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHh
Confidence 34556778999999999999999999999999877 6667776443 333333 378999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCC--------CCCcEEEEEeCCCCCCcccCCHHHHHHH------HHHcCC
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTD--------SNIVIMLVGNKADLRHLCAVSTEDAKAF------AERENT 150 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~------~~~~~~ 150 (217)
.+|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.... ..++.... +...++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCee
Confidence 99999999999999999999888888765421 279999999999997642 22222211 144678
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 151 FFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
+++++||+++.|++++|++|.+.+.+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999988765
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=3.4e-31 Score=195.76 Aligned_cols=163 Identities=31% Similarity=0.490 Sum_probs=138.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....+||+++|.+|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45679999999999999999999999988777766664 34455666788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcCC-cEEEe
Q 027894 90 LLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERENT-FFMET 155 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 155 (217)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..++...++...++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999986 7888887765 689999999999996543 2777888899999886 49999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027894 156 SALESMNVENAFTEVLTQI 174 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~ 174 (217)
||++++|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=3.6e-32 Score=197.08 Aligned_cols=163 Identities=30% Similarity=0.519 Sum_probs=126.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999998877666666554332 22334566678899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCccc----------CCHHHHHHHHHHcCC-cEEEeccC
Q 027894 91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLCA----------VSTEDAKAFAERENT-FFMETSAL 158 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 158 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+. +..++...++...++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 6888887665 5899999999999965443 477888899988886 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLTQIY 175 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~ 175 (217)
++.|++++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.1e-29 Score=185.76 Aligned_cols=169 Identities=78% Similarity=1.186 Sum_probs=150.5
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.+.+.+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.
T Consensus 22 ~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 101 (191)
T 1oix_A 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101 (191)
T ss_dssp --CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence 34456788999999999999999999999999888888999988888888899988899999999999888888889999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
++++++|+|.++..+++.+..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.++++
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999888888877654446789999999999987667788889999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027894 166 AFTEVLTQI 174 (217)
Q Consensus 166 ~~~~i~~~~ 174 (217)
+|+.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.7e-30 Score=186.96 Aligned_cols=162 Identities=22% Similarity=0.349 Sum_probs=129.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCc-CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE-FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.....++|+++|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+|||||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34568999999999999999999999987 4555556655 4444555554 68999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHhccCC---CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCC
Q 027894 88 GALLVYDVTRHVTFENVERWLKELRGHTD---SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALE 159 (217)
Q Consensus 88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 159 (217)
++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....++..+++. ..+++++++||++
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999888888776543 4799999999999965 345555665553 2357899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIYH 176 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~ 176 (217)
+.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=6.1e-31 Score=187.46 Aligned_cols=156 Identities=17% Similarity=0.348 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (217)
+||+++|.+|+|||||+++|.++.+.. +.+|.+. ....+... .+.+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988754 3455553 23334333 377999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHH
Q 027894 94 DVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVENAF 167 (217)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~ 167 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999988888876542 257999999999999653 2223322221 1234679999999999999999
Q ss_pred HHHHHHHHH
Q 027894 168 TEVLTQIYH 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987653
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.8e-30 Score=186.14 Aligned_cols=159 Identities=18% Similarity=0.317 Sum_probs=126.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.++.+.. +.++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 346899999999999999999999988754 4455543 344455554 77999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHH-----HHHcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAF-----AERENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ...+.... +...+++++++||+++.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 99999999999999888877765432 679999999999996532 22222222 22345689999999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYH 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.3e-29 Score=184.78 Aligned_cols=161 Identities=19% Similarity=0.313 Sum_probs=129.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGA 89 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 89 (217)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++.. +... .+.+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3457999999999999999999999998877777777766543 3344 37789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCH
Q 027894 90 LLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNV 163 (217)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 163 (217)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||+++.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999988888876542 267999999999999653 23333222211 23467999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIYH 176 (217)
Q Consensus 164 ~~~~~~i~~~~~~ 176 (217)
+++|++|.+.+.+
T Consensus 173 ~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 173 DITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.2e-29 Score=183.11 Aligned_cols=160 Identities=19% Similarity=0.325 Sum_probs=129.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+.. ...+.+|.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999988 55555666643 44455554 78899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888776542 267999999999999653 23333333322 245689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYHV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.4e-29 Score=185.03 Aligned_cols=155 Identities=17% Similarity=0.243 Sum_probs=127.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++|||||||+++|.+..+.. +.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999988753 3455544 345566666 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH------------cCCcEEEeccC
Q 027894 92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER------------ENTFFMETSAL 158 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 158 (217)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+..++..+.+.. .+++++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999988876543 26799999999999975 4566666665442 34679999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027894 159 ESMNVENAFTEVLTQ 173 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~ 173 (217)
+++|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998754
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=6.3e-30 Score=188.10 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=121.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++|||||||+++|.++.+.. +.+|.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999887643 34554443 34555666 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----------------cCCcEE
Q 027894 92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----------------ENTFFM 153 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 153 (217)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+..+++.+++.. .+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999988886643 26799999999999965 5667777776652 345799
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 027894 154 ETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~ 173 (217)
++||++|+|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 91
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=8.2e-31 Score=190.63 Aligned_cols=165 Identities=18% Similarity=0.361 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC--cCCCCCCcccceeEEEEEEEE---CCeEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRV---EDKIVKAQIWDTAGQERYRAITSAYYRGAV 87 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 87 (217)
.+||+++|++|||||||+++|.+. .+...+.+|.+.++....+.+ ++..+.+.+|||+|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444555677777766555443 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC---HHHHHHHHHHcCCc----EEEeccCC
Q 027894 88 GALLVYDVTRH-VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS---TEDAKAFAERENTF----FMETSALE 159 (217)
Q Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 159 (217)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+. .+....++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 58999999998887654 579999999999986543322 23345555566776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHHh
Q 027894 160 SM-NVENAFTEVLTQIYHVV 178 (217)
Q Consensus 160 ~~-~v~~~~~~i~~~~~~~~ 178 (217)
+. +++++++.|.+.+.+..
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC-
T ss_pred CchhHHHHHHHHHHHHhccc
Confidence 96 99999999988876544
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.9e-30 Score=190.01 Aligned_cols=158 Identities=16% Similarity=0.346 Sum_probs=120.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|||||||+++|.++.+.. +.+|.+ +....+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456999999999999999999999887753 334544 3344454544 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988888876543 257999999999999653 2223322221 1234579999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-29 Score=183.25 Aligned_cols=160 Identities=20% Similarity=0.342 Sum_probs=125.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|||||||+++|.++.+. .+.+|.+.. ...+.+++ ..+.+|||||++.+...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34699999999999999999999988775 444555533 33444554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+... ..+++++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988887653 26799999999999965 334444444432 245689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYHV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|++|.+.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877543
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=3.7e-29 Score=181.44 Aligned_cols=159 Identities=22% Similarity=0.329 Sum_probs=124.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|||||||+++|.+..+. .+.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45799999999999999999999988653 23455553 334455554 78899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ...+++++++||++++|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999988888775542 2679999999999997532 333332221 1234679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYH 176 (217)
Q Consensus 165 ~~~~~i~~~~~~ 176 (217)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=8.1e-30 Score=184.82 Aligned_cols=158 Identities=20% Similarity=0.351 Sum_probs=125.0
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVG 88 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (217)
.....++|+++|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ ..+.+|||||++.+...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345689999999999999999999999887 34445555443 3444555 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCC
Q 027894 89 ALLVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMN 162 (217)
Q Consensus 89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 162 (217)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ....++..+... ..+++++++||+++.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999988888876543 26799999999999965 234444444332 2456899999999999
Q ss_pred HHHHHHHHHHH
Q 027894 163 VENAFTEVLTQ 173 (217)
Q Consensus 163 v~~~~~~i~~~ 173 (217)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.4e-29 Score=181.56 Aligned_cols=161 Identities=19% Similarity=0.336 Sum_probs=126.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|++|||||||+++|.++.+ ..+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998877 3444565543 33444554 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-----cCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-----ENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.... .+++++++||++++|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888887653 367999999999999652 344444443322 23579999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027894 165 NAFTEVLTQIYHVV 178 (217)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (217)
++|++|.+.+.+.+
T Consensus 169 ~l~~~l~~~~~~~q 182 (183)
T 1moz_A 169 EGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887643
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=5.1e-30 Score=187.04 Aligned_cols=160 Identities=17% Similarity=0.285 Sum_probs=126.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.++.+.. +.+|.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999887654 34555533 33444554 78999999999999888999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHH-----HHcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFA-----ERENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 164 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887776543 2679999999999996532 222222221 2235679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 165 NAFTEVLTQIYHV 177 (217)
Q Consensus 165 ~~~~~i~~~~~~~ 177 (217)
++|++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.8e-28 Score=193.66 Aligned_cols=163 Identities=31% Similarity=0.503 Sum_probs=142.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999988777767765444 4556678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc------------ccCCHHHHHHHHHHcCC-cEEEecc
Q 027894 92 VYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL------------CAVSTEDAKAFAERENT-FFMETSA 157 (217)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 157 (217)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 6887777655 48999999999999643 56778889999999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027894 158 LESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 158 ~~~~~v~~~~~~i~~~~~~ 176 (217)
+++.|++++|++|.+.++.
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988763
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=8.3e-30 Score=187.11 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=121.4
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEE--EEEE-CCeEEEEEEEeCCCchhhhhhh---H
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--SIRV-EDKIVKAQIWDTAGQERYRAIT---S 80 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~Dt~G~~~~~~~~---~ 80 (217)
+......+||+++|.+|||||||++++.+... .. ++.+.+.... ...+ ++..+.+.+|||||++.+.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 34566789999999999999999998877432 22 3333333322 2223 2556789999999999887666 8
Q ss_pred hhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC-------cccCCHHHHHHHHH----H
Q 027894 81 AYYRGAVGALLVYDVTRH--VTFENVERWLKELRGHTDSNIVIMLVGNKADLRH-------LCAVSTEDAKAFAE----R 147 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~-------~~~~~~~~~~~~~~----~ 147 (217)
.+++.+|++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+ .+.+..++...++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 899999999999999997 66666677777664333 6899999999999754 23445566677777 6
Q ss_pred cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 148 ENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
.+++|+++||++ .|++++|+.+++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 788999999999 99999999998865
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.4e-31 Score=197.75 Aligned_cols=162 Identities=32% Similarity=0.517 Sum_probs=135.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999999888766666654433 344456677788899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc------------cCCHHHHHHHHHHcCC-cEEEec
Q 027894 91 LVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC------------AVSTEDAKAFAERENT-FFMETS 156 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 156 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999886 7877776654 479999999999996532 4555677778888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 027894 157 ALESMNVENAFTEVLTQI 174 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~ 174 (217)
|+++.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.5e-27 Score=179.02 Aligned_cols=167 Identities=20% Similarity=0.173 Sum_probs=121.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc------hhh---hhhhHh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ------ERY---RAITSA 81 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~ 81 (217)
...++|+|+|.+|||||||+++|++..+.....+..+.......+...+ ..+.+|||||+ +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999999876533333333334444444444 67899999998 331 122344
Q ss_pred hhcCCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH---HHHHHHHHcC--CcEEE
Q 027894 82 YYRGAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE---DAKAFAEREN--TFFME 154 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 154 (217)
++..+|++++|||++++.+++ ....|+..+.... .+.|+++|+||+|+.+.+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 578899999999999988764 2345666665432 47999999999999776666654 4566667776 88999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 155 TSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 155 ~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
+||+++.|++++|++|.+.+.+.+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877654
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=4.7e-28 Score=173.04 Aligned_cols=153 Identities=19% Similarity=0.200 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhhhc--
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR------AITSAYYR-- 84 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 84 (217)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998776555445555555555565665 578999999987653 33455554
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 85 GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
.+|++++|+|+++... ...|+..+.. .+.|+++|+||+|+...+.+.. +..+++...+++++++||++++|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988543 3456666654 4689999999999865444432 3567777889999999999999999
Q ss_pred HHHHHHHHHH
Q 027894 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.5e-29 Score=190.97 Aligned_cols=169 Identities=28% Similarity=0.376 Sum_probs=123.8
Q ss_pred cCCCCCCeeeEEEEEcCC---------CCChHHHHHHHhh---CcCCCCCCccc-ceeEEEEE--------------EEE
Q 027894 5 RADEDYDYLYKVVLIGDS---------GVGKSNLLSRFTR---NEFSLESKSTI-GVEFATRS--------------IRV 57 (217)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~---------~~GKtsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~ 57 (217)
+.....+..+||+++|.+ |||||||+++|++ ..+...+.++. +.++.... ..+
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 445566778999999999 9999999999999 45544444443 22222111 113
Q ss_pred CCeEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCcEEEEEE
Q 027894 58 EDKIVKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVY 93 (217)
Q Consensus 58 ~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~ii~v~ 93 (217)
++..+.+.+|| ++|++.+..++..+++ ++|++++||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 55678899999 5566666666666666 799999999
Q ss_pred eCCCh--hhHHHHHHHHHHHhcc-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHH
Q 027894 94 DVTRH--VTFENVERWLKELRGH-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER-ENTFFMETSALESMNVENAFTE 169 (217)
Q Consensus 94 d~~~~--~s~~~~~~~~~~l~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~ 169 (217)
|++++ .+++.+..|+..+... ...+.|+++|+||+|+...+.+ ++...++.. .+++++++||+++.|++++|++
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 99998 9999999999888654 2357999999999999654433 566777766 4889999999999999999999
Q ss_pred HHHHHH
Q 027894 170 VLTQIY 175 (217)
Q Consensus 170 i~~~~~ 175 (217)
|.+.+.
T Consensus 249 l~~~l~ 254 (255)
T 3c5h_A 249 LVQLID 254 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988763
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.9e-27 Score=171.50 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=121.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999999887766666666665666667764 5789999999999888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC---------CcEEEeccCCCC
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN---------TFFMETSALESM 161 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 161 (217)
+|+|++++...+..+ ++..+. ..+.|+++|+||+|+... ..++........+ ++++++||+++.
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHHH-HHHHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 999998854322222 222222 257899999999999652 2233333333221 579999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 027894 162 NVENAFTEVLTQIYHVV 178 (217)
Q Consensus 162 ~v~~~~~~i~~~~~~~~ 178 (217)
|++++|++|.+.+...+
T Consensus 157 gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhhhc
Confidence 99999999999877654
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=5.8e-28 Score=179.49 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=112.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe-EEEEEEEeCCCchhhhh-hhHhhhcCCcE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK-IVKAQIWDTAGQERYRA-ITSAYYRGAVG 88 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ 88 (217)
...++|+++|.+|+|||||+++|++..+...+.+ .+..... +.+++. .+.+.+|||||++.+.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4568999999999999999999999988766643 3333333 445543 57899999999999987 78889999999
Q ss_pred EEEEEeCCChh-hHHHHHH-HHHHHhc--cCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHH----------------
Q 027894 89 ALLVYDVTRHV-TFENVER-WLKELRG--HTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAE---------------- 146 (217)
Q Consensus 89 ii~v~d~~~~~-s~~~~~~-~~~~l~~--~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~---------------- 146 (217)
+++|||+++.. ++..... |...+.. ....+.|+++|+||+|+....... .+.+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555544 4333332 123579999999999997533211 111111111
Q ss_pred -----------------Hc--CCcEEEeccCCC------CCHHHHHHHHHHH
Q 027894 147 -----------------RE--NTFFMETSALES------MNVENAFTEVLTQ 173 (217)
Q Consensus 147 -----------------~~--~~~~~~~Sa~~~------~~v~~~~~~i~~~ 173 (217)
.. +++|+++||+++ .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.9e-27 Score=185.90 Aligned_cols=161 Identities=20% Similarity=0.296 Sum_probs=126.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhh-----hhhhHhhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERY-----RAITSAYY 83 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 83 (217)
..+||+++|.+|||||||+++|+++.... .+.+|.+..+. .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999998873322 34445444443 344444 478999999999888 67888899
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCC--ccc----CCHHHHHHHHHHcC---CcE
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRH--LCA----VSTEDAKAFAEREN---TFF 152 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 152 (217)
+++|++++|||++++.+++.+..|...+.... .++.|+++|+||+|+.. .+. +..+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755444322 26799999999999975 333 55577888888887 789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHH
Q 027894 153 METSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 153 ~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999988875543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.1e-27 Score=185.00 Aligned_cols=158 Identities=17% Similarity=0.336 Sum_probs=119.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+|+|.+|+|||||+++|.+..+.... +|.+..+ ..+...+ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999998865433 4444333 3344444 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccC-CCCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHT-DSNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 165 (217)
|||++++.+++.+..++..+.... ..++|+++|+||+|+.+.. ..++...... ..+++++++||+++.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999988777665443 2589999999999997532 3333332222 1345799999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 166 AFTEVLTQIYH 176 (217)
Q Consensus 166 ~~~~i~~~~~~ 176 (217)
+|++|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-27 Score=173.90 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=118.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC-----------chhhhhhhHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG-----------QERYRAITSAY 82 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 82 (217)
++|+++|.+|+|||||+++|.+..+...+.++.+.... .+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999877666565443332 33333 589999999 67777778778
Q ss_pred hcC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCc
Q 027894 83 YRG-AVGALLVYDVTRHVTFENV-ERWLKE---------LRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTF 151 (217)
Q Consensus 83 ~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
++. ++++++++++.+..+++.+ ..|... +......+.|+++|+||+|+.... .++..+++...+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7777777777777777765 455432 111122579999999999997643 56677888887764
Q ss_pred -------EEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 152 -------FMETSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 152 -------~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
++++||+++.|++++|++|.+.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999988765543
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=8.4e-27 Score=170.65 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=110.8
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhhhh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYRAI 78 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 78 (217)
+....++|+++|.+|+|||||+++|++..+.....++.+.+........+. .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345679999999999999999999999876555545555444444444444 489999999 7778887
Q ss_pred hHhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH--HHHHH-HHHHcCCcE
Q 027894 79 TSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST--EDAKA-FAERENTFF 152 (217)
Q Consensus 79 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~ 152 (217)
+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+....+... ++..+ +....++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 88888776 9999999999987776543 2222322 5689999999999976443322 22222 222346789
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 027894 153 METSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 153 ~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
+++||+++.|++++|++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998875
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=7.6e-27 Score=169.90 Aligned_cols=158 Identities=19% Similarity=0.192 Sum_probs=123.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhhhc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR------AITSAYYR 84 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~ 84 (217)
...++|+++|++|||||||+++|.+..+.....++.+.+.....+...+ ..+.+|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3568999999999999999999998765555556656666666666665 678999999987663 34555554
Q ss_pred --CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 85 --GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 85 --~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.....+. .+...++...+++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999875 4555667766654 568999999999986544443 346777788899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIYHV 177 (217)
Q Consensus 163 v~~~~~~i~~~~~~~ 177 (217)
++++|+++.+.+.+.
T Consensus 156 v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 156 IEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887543
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=3.7e-27 Score=195.72 Aligned_cols=161 Identities=17% Similarity=0.366 Sum_probs=125.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 90 (217)
...++|+++|.+|+|||||+++|++..+.. ..+|.+..+. .+.+.+ +.+.+|||||++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988644 3455554433 343333 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCCCCCcccCCHHHHHHHHH-----HcCCcEEEeccCCCCCHH
Q 027894 91 LVYDVTRHVTFENVERWLKELRGHTD-SNIVIMLVGNKADLRHLCAVSTEDAKAFAE-----RENTFFMETSALESMNVE 164 (217)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 164 (217)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+... ....+...... ..+++++++||++|+|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999988888765433 68999999999999652 23333332221 123569999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027894 165 NAFTEVLTQIYHVV 178 (217)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (217)
++|++|.+.+.+..
T Consensus 473 ~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 473 EGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998765443
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=4.9e-28 Score=188.00 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=120.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCC---CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh---hhHhhhcCCcE
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA---ITSAYYRGAVG 88 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 88 (217)
||+++|..|||||||++++.+..++. ...+|.+.++.. +. ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664332 245666665543 22 347899999999999964 46889999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc-------ccCCHHHHHHHHHH----cCCcEEEe
Q 027894 89 ALLVYDVTRH--VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL-------CAVSTEDAKAFAER----ENTFFMET 155 (217)
Q Consensus 89 ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 155 (217)
+++|||+++. .+++.+..|+..+.... ++.|+++++||+|+..+ +.+..+++.++++. .+++|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 33333444455444333 68999999999999753 34556667777775 67899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 156 SALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 156 Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
||++ .++.+.|..+++.+++....
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 9998 58999999999887765543
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2.7e-26 Score=162.78 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYYRG 85 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 85 (217)
+||+++|.+|+|||||+++|.+..+.. ...++.+.+.....+...+. .+.+|||||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999987542 22334444555556666664 689999999876 45566778899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 164 (217)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. ++..+++ ..++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998654332 112222222 468999999999997542 2334444 5677 79999999999999
Q ss_pred HHHHHHHHHH
Q 027894 165 NAFTEVLTQI 174 (217)
Q Consensus 165 ~~~~~i~~~~ 174 (217)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=4e-26 Score=174.07 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=120.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhhh-
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA------ITSAYY- 83 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~- 83 (217)
...++|+++|.+|+|||||+++|++..+.....++.+.+.....+...+ ..+.+|||||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4568999999999999999999999876554445555555555555554 6799999999876643 224454
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 84 -RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 84 -~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
..+|++++|+|+++..+. ..|...+.. .+.|+++|+||+|+...+.+.. +...++...+++++++||+++.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999987543 335555544 4699999999999865444442 36778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 v~~~~~~i~~~~~ 175 (217)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.2e-25 Score=175.80 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=126.6
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEEEEEEECCeEEEEEEEeCCCchh----------h
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRVEDKIVKAQIWDTAGQER----------Y 75 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~ 75 (217)
.+..+..-.|+++|.+|||||||+|+|++..+..... +..+........... ...++.+|||||+.. +
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence 4566778899999999999999999999988764332 222223333333333 136789999999743 3
Q ss_pred hhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEE
Q 027894 76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFM 153 (217)
Q Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 153 (217)
......+++.+|++++|+|++++.+..+...|+..+.. .+.|+++|+||+|+.............+....+ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 45667788999999999999999888887777777765 468999999999997444556667777777775 7899
Q ss_pred EeccCCCCCHHHHHHHHHHHHH
Q 027894 154 ETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
++||+++.|++++|+++.+.+.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEeCCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999988764
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=7.6e-27 Score=167.91 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=112.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh----h--h--hHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR----A--I--TSAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~--~--~~~~ 82 (217)
..++|+++|.+|+|||||+++|.+..+.. ...++.+.++....+.+++. .+.+|||||++.+. . . ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 35899999999999999999999876432 22344445556666767764 57899999975421 1 1 1235
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
++.+|++++|+|++++.+++. ..|+..+......+.|+++|+||+|+.+... .++...+++++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999888763 4666666655446799999999999854211 11222467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 v~~~~~~i~~~~~ 175 (217)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=1.4e-25 Score=163.91 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=115.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYR 76 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~ 76 (217)
+.+....++|+++|.+|+|||||+++|++..... ..++.+.+........+. .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 4455677999999999999999999999987433 234444443333333333 478999999 66777
Q ss_pred hhhHhhhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHHHHHHHHc-
Q 027894 77 AITSAYYRGA---VGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDAKAFAERE- 148 (217)
Q Consensus 77 ~~~~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~- 148 (217)
..+..+++.+ |++++|+|+++..+... +..|+.. .+.|+++|+||+|+.+.. ....++...++...
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777777665 99999999987654333 2333332 368999999999996432 23335555666653
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 149 NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 149 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
+++++++||+++.|++++|++|.+.+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999998774
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=8.3e-27 Score=195.01 Aligned_cols=165 Identities=22% Similarity=0.263 Sum_probs=125.4
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEE------EE--ECCeEEEEEEEeCCCchhhhhhhH
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS------IR--VEDKIVKAQIWDTAGQERYRAITS 80 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~l~Dt~G~~~~~~~~~ 80 (217)
.....+||+++|.+|||||||+++|++..+.....++.+.++.... +. ..+..+.+.+|||||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3566899999999999999999999999987777777777666542 11 123357899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
.+++.+|++++|+|+++. +.+..|+..+.... .+.|+++|+||+|+...+.+..++...++...+++++++||+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998765 45677887777665 57999999999999877778888888888889999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQIYHV 177 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~~~ 177 (217)
.|++++|+.|.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999887653
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=4.9e-26 Score=173.36 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh----------hhHhhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA----------ITSAYY 83 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 83 (217)
.+|+++|.+|||||||+|+|++........++.+.+.....+.+.+. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998765555566667777777777774 789999999866543 455566
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 027894 84 --RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESM 161 (217)
Q Consensus 84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (217)
..+|++++|+|+++..+...+ ...+.. .+.|+++|+||+|+...+.... ....+....+++++++||+++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL---TSQLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH---HHHHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHH---HHHHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986554333 333332 4799999999999864333222 2445677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 027894 162 NVENAFTEVLTQ 173 (217)
Q Consensus 162 ~v~~~~~~i~~~ 173 (217)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999775
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=5.8e-26 Score=174.18 Aligned_cols=153 Identities=19% Similarity=0.161 Sum_probs=114.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhhhc-
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR------AITSAYYR- 84 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 84 (217)
..++|+++|.+|||||||+++|++........++.+.+. ....+.. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 358999999999999999999998764443334333333 3333443 4678999999987664 44556665
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 85 -GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 85 -~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
.+|++++|+|+++..+. ..|...+.. .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555543 479999999999986544333 3456777888999999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 164 ENAFTEVLTQI 174 (217)
Q Consensus 164 ~~~~~~i~~~~ 174 (217)
+++|+++.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999997754
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.5e-25 Score=167.36 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=112.0
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEEC-CeEEEEEEEeCCC----------chhhh
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVE-DKIVKAQIWDTAG----------QERYR 76 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~ 76 (217)
.+....++|+++|.+|+|||||+++|++.........+.+.+......... .....+.+||||| ++.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 344567999999999999999999999987322222222223333333333 3336789999999 45556
Q ss_pred hhhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HHHHHHHHHH----
Q 027894 77 AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TEDAKAFAER---- 147 (217)
Q Consensus 77 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~---- 147 (217)
.....+++. +|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+....... .+...+....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 666666655 78899999998864422 2344455543 568999999999986533221 1222222222
Q ss_pred ---cCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 148 ---ENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 148 ---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
.+++++++||+++.|++++|++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4678999999999999999999998876543
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=6.2e-25 Score=168.89 Aligned_cols=156 Identities=21% Similarity=0.139 Sum_probs=119.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhhh--
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA------ITSAYY-- 83 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-- 83 (217)
..++|+++|++|||||||+++|++..+.....++.+.+.....+.+.+. .+.+|||||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 3589999999999999999999998775556666677777777777764 589999999876644 455555
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
.++|++++|+|+++... ...+...+... ...|+++|+||+|+...+..... ...+....+++++++||+++.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999988632 23333444332 23899999999998643333322 66777788999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027894 164 ENAFTEVLTQIY 175 (217)
Q Consensus 164 ~~~~~~i~~~~~ 175 (217)
+++|+.+.+.+.
T Consensus 154 ~~l~~~i~~~~~ 165 (271)
T 3k53_A 154 EELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 123
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=1e-25 Score=181.97 Aligned_cols=190 Identities=17% Similarity=0.148 Sum_probs=132.0
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-------
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI------- 78 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 78 (217)
+.+....++|+++|..|+|||||+++|++..+.. ...+..+.+.....+.+.+. ..+.+|||||++.+...
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHH
Confidence 3445678999999999999999999999987642 23344445555556656553 27899999998765433
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL 158 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
+..++..+|++++|+|+... +....|+..+... +.|+++|+||+|+...... +...++...++++++++||+
T Consensus 107 ~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 45578899999999998333 2345566666553 6899999999999765443 55666677788999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCceeeecCCCCccCcc
Q 027894 159 ESMNVENAFTEVLTQIYHVVSRKALDIGGDPAALPKGQTINVGGKDDVSAVK 210 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (217)
++.|++++|++|.+.+.+. . +..--....+.|+.+.+....+..++|
T Consensus 179 tg~gI~eL~~~L~~~l~~~---~--e~~l~~dLv~~gd~v~lv~pid~~~pk 225 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD---E--EIPYLGDLIDGGDLVILVVPIDLGAPK 225 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC---C--CCCSCSCCCCTTCCEEEECCCSCCSST
T ss_pred CCCCHHHHHHHHHHhhhhh---c--cCcchhhccccCceEEEEeeccccCcC
Confidence 9999999999999887533 1 111123467788888888777666654
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.8e-25 Score=172.00 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh----------hhhHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR----------AITSAY 82 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 82 (217)
.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||+..+. ..+..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876555556666666666666655 457899999976654 223333
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCC
Q 027894 83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALES 160 (217)
Q Consensus 83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (217)
+ ..+|++++|+|+++......+.. .+.. .+.|+++|+||+|+.+..... .....+.+..+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~---~l~~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTL---QLLE---LGIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHH---HHHH---HTCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHH---HHHh---cCCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 79999999999988655443333 3332 268999999999986433222 1245667778999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQIY 175 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~ 175 (217)
.|++++|++|.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999998876543
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.1e-25 Score=167.57 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=106.2
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG 85 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (217)
.....++|+++|++|+|||||+++|.+..+... +.++.+..+ ....+.+|||||++.+...+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 355679999999999999999999999886542 223322211 33568999999999998888888877
Q ss_pred ----CcEEEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCCCcEEEEEeCCCCCCcccCC------HHHHHHHHHHcCC
Q 027894 86 ----AVGALLVYDVT-RHVTFENVERWLKELRGH----TDSNIVIMLVGNKADLRHLCAVS------TEDAKAFAERENT 150 (217)
Q Consensus 86 ----~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~ 150 (217)
+|++++|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.....+. .+++..++...++
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888998888887776553 23679999999999997654433 4556677777778
Q ss_pred cEEEeccCCCCC
Q 027894 151 FFMETSALESMN 162 (217)
Q Consensus 151 ~~~~~Sa~~~~~ 162 (217)
+++++||+++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998765
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2.5e-24 Score=175.81 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=117.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ----------ERYRAIT 79 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 79 (217)
+..++|+++|.+|+|||||+|+|++..+. ....++.+.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999998764 233344444444555666664 5899999997 5555443
Q ss_pred H-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-HHH----HcCCcEE
Q 027894 80 S-AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-FAE----RENTFFM 153 (217)
Q Consensus 80 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~~ 153 (217)
. .+++.+|++++|+|++++.++++. .|+..+.. .+.|+++|+||+|+.+......++..+ +.. ..+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 477889999999999999888776 46555543 579999999999997655444333322 222 2368899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 154 ETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
++||++|.|++++|+.+.+.+....
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEecccCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998887654
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.9e-23 Score=166.44 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=121.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh---------hhhHh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR---------AITSA 81 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 81 (217)
...++|+++|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999999875333223333334444444443 578999999964321 12224
Q ss_pred hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC
Q 027894 82 YYRGAVGALLVYDVTRHV--TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
+...+|++++|+|++++. +++....|+..+.... .+.|+++|+||+|+..... .++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 456799999999999877 6777778888877654 2799999999999865332 2445666667889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027894 160 SMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~~~ 178 (217)
|+|++++|++|.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999886654
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=6e-24 Score=174.32 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=99.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh--------Hhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT--------SAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 82 (217)
..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||++.+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3589999999999999999999998643 23334445555556666776 578999999987654333 336
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
++.+|++++|+|++++.+++.+..+...+... .+.|+++|+||+|+...... ....+......+++++||+++.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 78999999999999988875443333333322 26999999999999764332 22334433247899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIY 175 (217)
Q Consensus 163 v~~~~~~i~~~~~ 175 (217)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998775
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.1e-23 Score=172.92 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=121.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCC----------chhhhhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAG----------QERYRAI 78 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 78 (217)
....++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 456799999999999999999999976532 223344444444445556664 789999999 6777665
Q ss_pred hH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-----CCcE
Q 027894 79 TS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-----NTFF 152 (217)
Q Consensus 79 ~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~ 152 (217)
.. .+++.+|++++|+|+++..+.. ...|...+.. .+.|+++|+||+|+.+.+....++..+.+... ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 54 4778999999999998865433 2344444443 56999999999999876666667766666654 5889
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027894 153 METSALESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 153 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 179 (217)
+++||++|.|++++|+++.+.+.....
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998866553
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=3.2e-23 Score=161.24 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=108.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--------YRAITSA 81 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 81 (217)
....+|+++|.+|+|||||+|+|++..+.... .+..+.......+... ..++.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 34568999999999999999999998875432 2222222222223333 36789999999754 4556677
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHc-C-CcEEEeccCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERE-N-TFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 159 (217)
+++.+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+..... .....+..+ + .+++++||++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 8899999999999998755432 22334554432 4799999999999864322 022223322 3 4689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~ 174 (217)
+.|++++|+.|.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999987755
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=8.5e-24 Score=166.73 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=118.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhhhc---CC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSAYYR---GA 86 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~---~~ 86 (217)
.+|+++|.+|||||||+++|++........+..+.......+.+++. ..+.+|||||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987643322233333333334444431 4689999999643 3334444544 59
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccCC
Q 027894 87 VGALLVYDVTR---HVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSALE 159 (217)
Q Consensus 87 d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 159 (217)
|++++|+|+++ ..+++++..|+..+..... .++|+++|+||+|+.... +...++..... .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889999999988887652 579999999999986422 34566666665 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIYH 176 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~ 176 (217)
++|+++++++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988753
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=4.4e-23 Score=169.36 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=116.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCch-hhh--------hhhHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-RYR--------AITSAY 82 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~~ 82 (217)
.++|+++|.+|+|||||+|+|++..+. ....++.+.+.....+.+++ ..+.+|||||.. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999998643 23334555566666666776 568999999987 442 223457
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
++.+|++++|+|++++.++++.+ ++..+ .+.|+++|+||+|+... ...++...++ ..+++++++||++++|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 78999999999999988876643 23333 36899999999999652 3444554443 2457899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIYHV 177 (217)
Q Consensus 163 v~~~~~~i~~~~~~~ 177 (217)
++++|++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987643
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=1.2e-22 Score=160.72 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=103.5
Q ss_pred EEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHhccCC-CCCc
Q 027894 52 TRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRGHTD-SNIV 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~~-~~~p 120 (217)
...+.+.. +.+.+|||+|++.++..|..++++++++|+|||+++ ..++.+...|+..+..... .+.|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34444543 789999999999999999999999999999999999 4678888888888876432 6799
Q ss_pred EEEEEeCCCCCCcc---------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 121 IMLVGNKADLRHLC---------------AVSTEDAKAFAE-----------RENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 121 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
+++++||+|+..++ .+..+++..++. ..++.+++|||+++.|++++|+++.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999999985322 356788888876 3567899999999999999999999988
Q ss_pred HHHh
Q 027894 175 YHVV 178 (217)
Q Consensus 175 ~~~~ 178 (217)
.+..
T Consensus 343 ~~~~ 346 (353)
T 1cip_A 343 IKNN 346 (353)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7543
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1.9e-22 Score=166.15 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=113.5
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT 79 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (217)
.......++|+++|+.++|||||+++|++.. +........+.+.....+.+++ ..+.+|||||++.|...+
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAV 90 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHH
Confidence 3344568999999999999999999999876 2222223333333333444555 678999999999999889
Q ss_pred HhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHHHHHHHHHHc----CC
Q 027894 80 SAYYRGAVGALLVYDVTRH---VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTEDAKAFAERE----NT 150 (217)
Q Consensus 80 ~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~----~~ 150 (217)
...+..+|++++|+|+++. .+.+.+. .+.. .++|+++|+||+|+.+.. +...++..+++... ++
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999884 3333222 2222 357889999999996522 11234455566555 57
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 151 FFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
+++++||++++|+++++++|.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 8999999999999999999999876
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.3e-22 Score=164.31 Aligned_cols=152 Identities=20% Similarity=0.292 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER---------YRAITSAYY 83 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 83 (217)
.+|+++|.+|||||||+|+|++..... ...++.+.+.....+.+.+. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999999887532 33344455555566667764 578999999653 345667789
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH-HHHHHHcCC-cEEEeccCC
Q 027894 84 RGAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA-KAFAERENT-FFMETSALE 159 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 159 (217)
+.+|++++|+|+.++.+..+ +..|+.. .++|+++|+||+|+... . ..+. .+++ ..++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999988655433 2333322 36899999999998532 1 1222 3343 4566 689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~~~~ 177 (217)
|.|++++|+++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999988643
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=7.5e-22 Score=159.65 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=115.4
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEE-------EE---------EE---CCeEEEEEEEe
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-------SI---------RV---EDKIVKAQIWD 68 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~l~D 68 (217)
+.....++|+++|++|+|||||+++|++.......... ....... .+ .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 34566799999999999999999999985443211100 0000000 00 00 11236799999
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC--CHHHHHHHHH
Q 027894 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV--STEDAKAFAE 146 (217)
Q Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~ 146 (217)
|||++.|...+...+..+|++++|+|++++.++.....++..+.... ..|+++|+||+|+.+..+. ..++..++..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876666666666554432 2589999999998653211 1122333332
Q ss_pred Hc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 147 RE---NTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 147 ~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.. +++++++||+++.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 22 578999999999999999999987654
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=4.4e-22 Score=166.99 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=112.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----CC------CcccceeEEEE--EEEE---CCeEEEEEEEeCCCch
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE--FSL-----ES------KSTIGVEFATR--SIRV---EDKIVKAQIWDTAGQE 73 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~ 73 (217)
...+|+++|+.++|||||+++|+... ... .. ....+++.... .+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999998732 110 00 01122222222 2222 4556889999999999
Q ss_pred hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC---
Q 027894 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT--- 150 (217)
Q Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 150 (217)
.|...+..+++.+|++++|+|++++.+.+....|..... .+.|+++|+||+|+.... ......++....++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999888887877776654 578999999999997532 23334556666666
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 151 FFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.++++||+++.|++++|++|.+.+..
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCC
Confidence 48999999999999999999887653
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=8e-22 Score=148.86 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=107.9
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc--ccceeEEEEEEEECCeEEEEEEEeCCCc-----------hh
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSIRVEDKIVKAQIWDTAGQ-----------ER 74 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~ 74 (217)
......++|+++|.+|+|||||+++|++..+.....+ +.+.......+.+.+ ..+.+|||||. +.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3455679999999999999999999999887555444 444555555566666 46899999993 34
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhH--HHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC------HHHHHHHHH
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTF--ENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS------TEDAKAFAE 146 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~ 146 (217)
+......+++.+|++++|+|+++.... ..+..+...+... ...|+++|+||+|+.....+. .+.+..++.
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 455555666789999999998764432 2222222222211 236899999999986543332 245777888
Q ss_pred HcCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q 027894 147 RENTFFMETSALES-----MNVENAFTEVLTQIYH 176 (217)
Q Consensus 147 ~~~~~~~~~Sa~~~-----~~v~~~~~~i~~~~~~ 176 (217)
..+..++.++...+ .++.++|..+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888888887754 6788888877666643
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=9.2e-22 Score=164.79 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=115.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----CCCc------ccceeE--EEEEEEE---CCeEEEEEEEeCCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSL-----ESKS------TIGVEF--ATRSIRV---EDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~-----~~~~------~~~~~~--~~~~~~~---~~~~~~~~l~Dt~G~ 72 (217)
+...+|+++|+.++|||||+++|+... +.. .... ..+++. ....+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999998632 110 0000 011111 1112222 455688999999999
Q ss_pred hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC--
Q 027894 73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-- 150 (217)
Q Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 150 (217)
..|...+..++..+|++++|+|++++.+.+....|..... .+.|+++|+||+|+.... ......++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999888889999999999999999988888888776654 578999999999996532 22334555565666
Q ss_pred -cEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 151 -FFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 151 -~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.++++||++|.|++++|++|++.+..
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 48999999999999999999887754
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=2.3e-21 Score=157.07 Aligned_cols=160 Identities=23% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCc--ccceeEEEEEEEE-------------C--C----eEEEEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE---FSLESKS--TIGVEFATRSIRV-------------E--D----KIVKAQ 65 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (217)
....++|+++|+.++|||||+++|.+.. +.....+ |....+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3456999999999999999999998543 2222223 3333333333321 1 1 136899
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHH
Q 027894 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTE 139 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~ 139 (217)
+|||||++.|.......+..+|++++|+|++++ .+.+.+. .+... ...|+++++||+|+.+... ...+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999988888888899999999999964 3333332 22221 2357999999999975433 2345
Q ss_pred HHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 140 DAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 140 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
++.+++.. .+++++++||++++|+++++++|.+.+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 66666654 3678999999999999999999987654
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=8.4e-23 Score=166.99 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=104.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhh--------Hhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAIT--------SAY 82 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 82 (217)
..++|+++|.+|+|||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 45899999999999999999999976542 2334444445445566676 567999999976543322 235
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCC
Q 027894 83 YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMN 162 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (217)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||+++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999999776554 44555553 37999999999997644333 111111 356899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIYH 176 (217)
Q Consensus 163 v~~~~~~i~~~~~~ 176 (217)
++++|++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887753
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=1.2e-21 Score=155.89 Aligned_cols=163 Identities=17% Similarity=0.124 Sum_probs=109.9
Q ss_pred eeE-EEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHhh
Q 027894 13 LYK-VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ---------ERYRAITSAY 82 (217)
Q Consensus 13 ~~~-I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~ 82 (217)
.++ |+++|++|+|||||+|+|.+..+.....+..+.+.....+.+++ ..+.+|||+|. +.+...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 344 99999999999999999999876443334444555566677777 46799999996 2233333 35
Q ss_pred hcCCcEEEEEEeCCChh--hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHc---CCcEEEec
Q 027894 83 YRGAVGALLVYDVTRHV--TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERE---NTFFMETS 156 (217)
Q Consensus 83 ~~~~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S 156 (217)
+..+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+...... ..+.+..++... +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 68899999999999877 5555655655555444367899999999998642210 011222233443 34689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 027894 157 ALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 157 a~~~~~v~~~~~~i~~~~~~~~ 178 (217)
|+++.|+++++++|.+.+....
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHhcccC
Confidence 9999999999999988776543
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=9.5e-22 Score=153.51 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=102.1
Q ss_pred EEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHhccCC-CCC
Q 027894 51 ATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRGHTD-SNI 119 (217)
Q Consensus 51 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~ 119 (217)
....+.+.+ +.+.+|||+|++.++..|..++++++++|+|||++ +..++.+...|+..+..... .+.
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 344455554 78999999999999999999999999999999665 66778877777777765443 679
Q ss_pred cEEEEEeCCCCCCcc----------------cCCHHHHHHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 120 VIMLVGNKADLRHLC----------------AVSTEDAKAFAE----------RENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 120 p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
|+++++||+|+..++ ..+.+++..++. ..++.+++|||+++.|++++|+.+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999986433 467778887743 356778999999999999999999999
Q ss_pred HHHHh
Q 027894 174 IYHVV 178 (217)
Q Consensus 174 ~~~~~ 178 (217)
+++..
T Consensus 316 Il~~~ 320 (327)
T 3ohm_A 316 ILQLN 320 (327)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88643
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=7.8e-22 Score=160.92 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=105.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCcccceeEEEEEEEE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-------------------------------ESKSTIGVEFATRSIRV 57 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 57 (217)
.....++|+++|++++|||||+++|+...-.. ......+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34567999999999999999999996542111 11123344444444444
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCc
Q 027894 58 EDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---FENVERWLKELRGHTDSNIV-IMLVGNKADLRHL 133 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~ 133 (217)
.+ ..+.+|||||++.|...+..++..+|++++|+|+++... |+....+...+......+.| +++|+||+|+...
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 43 589999999999999999999999999999999998642 11001111111111113566 8999999998531
Q ss_pred c------cCCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q 027894 134 C------AVSTEDAKAFAEREN------TFFMETSALESMNVENAFT 168 (217)
Q Consensus 134 ~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~ 168 (217)
. +...++...++...+ ++++++||++|.|+.++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 112234445555544 5799999999999999766
No 145
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=7.3e-22 Score=156.18 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=95.1
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCC
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRGHTD-SNIVIMLVGNKA 128 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~ 128 (217)
..+.+.+|||+|++.++..|..++++++++|+|||++ +..+++....|+..+..... .+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 78899999888888876532 679999999999
Q ss_pred CCCCccc--C-------------------CHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHH
Q 027894 129 DLRHLCA--V-------------------STEDAKAFAER----------------ENTFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 129 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
|+..++. + ..+++..++.. ..+.+++|||++++|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853221 1 14566666432 124468999999999999999999
Q ss_pred HHHHHHh
Q 027894 172 TQIYHVV 178 (217)
Q Consensus 172 ~~~~~~~ 178 (217)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=1.2e-21 Score=158.79 Aligned_cols=161 Identities=24% Similarity=0.211 Sum_probs=111.7
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCc---CCCCCCc--ccceeEEEEEEEE-------------C--C----eEEEE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE---FSLESKS--TIGVEFATRSIRV-------------E--D----KIVKA 64 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 64 (217)
.....++|+++|+.++|||||+++|++.. +.....+ |....+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 45678999999999999999999998543 2222223 3333333333211 0 1 13689
Q ss_pred EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCH
Q 027894 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VST 138 (217)
Q Consensus 65 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~ 138 (217)
.+|||||++.|.......+..+|++++|+|+++. .+.+.+.. +... ...|+++|+||+|+.+... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999988888888899999999999964 33333322 2221 2357999999999865322 123
Q ss_pred HHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 139 EDAKAFAER---ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 139 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
+++.+++.. .+++++++||+++.|+++++++|.+.+.
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 344555543 4678999999999999999999887654
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.6e-22 Score=155.65 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=94.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCch-------h
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-------R 74 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~ 74 (217)
....++|+++|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 346799999999999999999998876544332 3555555555555555555789999999962 2
Q ss_pred hhhhh-------Hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 75 YRAIT-------SAYYR-------------GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 75 ~~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
+..+. ..++. .+|+++++++.+.......-..++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 33322 33333 37899999987663322222344555543 79999999999985422
Q ss_pred cCC--HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 135 AVS--TEDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
+.. ...+.+.+...+++++++|+.+++|+.+++++|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 221 1334455566789999999999999999998887643
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.6e-22 Score=165.09 Aligned_cols=152 Identities=19% Similarity=0.155 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhhhcC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE--------RYRAITSAYYRG 85 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~ 85 (217)
++|+++|.+|||||||+|+|++..+... ..+.+.+..............+.+|||||++ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999999876432 2333443333333333334578999999975 566777888999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCCCCHH
Q 027894 86 AVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALESMNVE 164 (217)
Q Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 164 (217)
+|++++|+|+.++.+..+. .+...+.. .+.|+++|+||+|+..... +..++. ..++ +++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d~-~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADE-EVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHHH-HHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 9999999999987665442 22233332 5789999999999864321 111222 3454 68999999999999
Q ss_pred HHHHHHHHHHH
Q 027894 165 NAFTEVLTQIY 175 (217)
Q Consensus 165 ~~~~~i~~~~~ 175 (217)
++++++.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 149
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=1.7e-21 Score=154.59 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=95.5
Q ss_pred EEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHhccC-CCCCcE
Q 027894 53 RSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRGHT-DSNIVI 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 121 (217)
..+.+.+ +.+.+|||+|++.++..|..++++++++|||+|+++ ..++.+...|+..+.... ..+.|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 3444554 789999999999999999999999999999999999 778998888888887653 267999
Q ss_pred EEEEeCCCCCCcc----------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 122 MLVGNKADLRHLC----------------AVSTEDAKAFAE-----------RENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 122 iiv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
|+++||+|+..++ .++.+++..++. ..++.+++|||++++|++++|+++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999985322 256777777662 3457899999999999999999999988
Q ss_pred HHHhh
Q 027894 175 YHVVS 179 (217)
Q Consensus 175 ~~~~~ 179 (217)
.+..-
T Consensus 352 ~~~~l 356 (362)
T 1zcb_A 352 LHDNL 356 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=1.5e-21 Score=149.09 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=106.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCcc-cceeEEEEEEEECCeEEEEEEEeCCCchhhh-----------
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEF-SLESKST-IGVEFATRSIRVEDKIVKAQIWDTAGQERYR----------- 76 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------- 76 (217)
....++|+|+|.+|+|||||+++|++... .....++ .+.......+...+ ..+.+|||||...+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34579999999999999999999998873 3333333 34444444555555 568999999975432
Q ss_pred hhhHhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHhccCCCCCcEEEEEe-CCCCCCcccCCH-------HHHHHHHHH
Q 027894 77 AITSAYYRGAVGALLVYDVTRHVTF-ENVERWLKELRGHTDSNIVIMLVGN-KADLRHLCAVST-------EDAKAFAER 147 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~~~ 147 (217)
.....+++.+|++++|+|+++.... ..+..++..+.... ...|.++++| |+|+... .... .++..++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2223467899999999999863222 12223333332211 1456666666 9999642 1111 224445555
Q ss_pred cCCc---E--EEeccCCCCCHHHHHHHHHHHHHH
Q 027894 148 ENTF---F--METSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 148 ~~~~---~--~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.+.. + +++||+++.|++++|++|.+.+..
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 5533 2 789999999999999999998765
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.4e-21 Score=148.10 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=106.1
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcc--cceeEEEEEEEECCeEEEEEEEeCCCc--------hhhhhh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKST--IGVEFATRSIRVEDKIVKAQIWDTAGQ--------ERYRAI 78 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~ 78 (217)
.....++|+++|.+|+|||||+|+|++.........+ .+...........+ ..+.+|||||. +.+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3456899999999999999999999998865544333 23333344455555 56899999995 333222
Q ss_pred hHhh----hcCCcEEEEEEeCCChhhHH-HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC------CHHHHHHHHHH
Q 027894 79 TSAY----YRGAVGALLVYDVTRHVTFE-NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV------STEDAKAFAER 147 (217)
Q Consensus 79 ~~~~----~~~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~ 147 (217)
...+ .+.+|++++|+|+++....+ .+..++..+......+.|+++++||+|+...... ..+.++.+...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 3223 38999999999998532211 1223333332211136899999999999642111 11346777777
Q ss_pred cCCcEEEeccCC-----CCCHHHHHHHHHHHHHH
Q 027894 148 ENTFFMETSALE-----SMNVENAFTEVLTQIYH 176 (217)
Q Consensus 148 ~~~~~~~~Sa~~-----~~~v~~~~~~i~~~~~~ 176 (217)
.+..++.+++.. +.++.++++.|.+.+.+
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 888887777665 47899999888877765
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=7e-21 Score=155.57 Aligned_cols=162 Identities=20% Similarity=0.177 Sum_probs=109.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI----------- 78 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 78 (217)
+..++|+++|++|||||||+|+|++..... ...++.+.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 356999999999999999999999986522 22233334444445666774 5789999997433221
Q ss_pred -hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHH-HH----HcCCcE
Q 027894 79 -TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAF-AE----RENTFF 152 (217)
Q Consensus 79 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~----~~~~~~ 152 (217)
...+++.+|++++++|++++.+.++. .+...+.. .+.|+++|+||+|+.+......++.... .. ..++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 13456789999999999987666543 23333332 5689999999999976444444333322 22 235789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 153 METSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 153 ~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
+++||++|.|++++|+.+.+.+....
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999998776543
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=1.9e-21 Score=151.36 Aligned_cols=155 Identities=22% Similarity=0.200 Sum_probs=105.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCch-h--------hhhhhHh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQE-R--------YRAITSA 81 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~~ 81 (217)
...+|+++|++|+|||||+++|++..+.... .+..+.......+...+ ..+.+|||||.. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3458999999999999999999998764322 12122222222233343 578999999986 2 2233455
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHH-HHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWL-KELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (217)
+++.+|++++|+|+++ -+ ....++ ..+. ..+.|+++++||+|+........+...++....++ .++++||++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 6788999999999977 22 222233 3332 24689999999999865222223444555555666 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027894 160 SMNVENAFTEVLTQI 174 (217)
Q Consensus 160 ~~~v~~~~~~i~~~~ 174 (217)
+.|++++++.+.+.+
T Consensus 159 g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 159 GLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999988654
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=8.8e-23 Score=162.58 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=92.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCC-CCC--------cccceeEEEEEEEECCeEEEEEEEeCCCc-------hh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-ESK--------STIGVEFATRSIRVEDKIVKAQIWDTAGQ-------ER 74 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 74 (217)
...++|+|+|++|+|||||+++|.+..... ... ++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654322 211 33333433334444566678999999998 55
Q ss_pred hhhhhH-------hhhcCC-------------cEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 75 YRAITS-------AYYRGA-------------VGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 75 ~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
+..++. .+++.+ |+++|+++.. ..++..+. .++..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 655554 444433 3455555431 34444443 344443 267999999999999764
Q ss_pred ccCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHhhc
Q 027894 134 CAVST--EDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVVSR 180 (217)
Q Consensus 134 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 180 (217)
.++.. +++..++...+++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 44433 456667777889999999999999 89999999888765543
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=2e-21 Score=160.52 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCcccceeEEEEEEEECCe
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL-------------------------------ESKSTIGVEFATRSIRVEDK 60 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (217)
..+||+++|++++|||||+++|+...... ......+.+..... +...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FSTH 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--EecC
Confidence 46999999999999999999997652110 01112222222222 3333
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHH------HHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN------VERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
...+.+|||||++.|...+..++..+|++++|+|++++.++.. ....+..+.. . ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccch
Confidence 4679999999999999999999999999999999998754322 1122222221 1 235699999999997533
Q ss_pred cCCHH----HHHHHHHHc-----CCcEEEeccCCCCCHHH
Q 027894 135 AVSTE----DAKAFAERE-----NTFFMETSALESMNVEN 165 (217)
Q Consensus 135 ~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 165 (217)
+...+ +...+.... +++++++||++|+|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22222 233333333 45799999999999985
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=3.1e-21 Score=157.44 Aligned_cols=158 Identities=23% Similarity=0.204 Sum_probs=106.7
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCC---C---------CCcc---------------------cceeEEEE
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL---E---------SKST---------------------IGVEFATR 53 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~---~---------~~~~---------------------~~~~~~~~ 53 (217)
+......++|+++|++++|||||+++|++..... . ...+ .+.+....
T Consensus 18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3344567999999999999999999998754110 0 0011 11122222
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 54 SIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 54 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
.+ ......+.+|||||++.|...+..++..+|++++|+|++++...+. ..++..+... ...|+++|+||+|+.+.
T Consensus 98 ~~--~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~--~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 98 YF--STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL--GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EE--ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEEECTTTTTS
T ss_pred Ee--ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEEcCcCCcc
Confidence 22 2233678999999999998888889999999999999998654333 2333333322 12368999999999652
Q ss_pred cc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHH
Q 027894 134 CA----VSTEDAKAFAEREN-----TFFMETSALESMNVENAFTE 169 (217)
Q Consensus 134 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~ 169 (217)
.+ ...++...++...+ ++++++||++|.|++++|+.
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 11 12344566666677 67999999999999986443
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.2e-23 Score=174.15 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=114.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++++|||||+++|.+..+.....++.+.++....+.... ...+.+|||||++.|...+..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 357899999999999999999998776555555554444443333321 2368999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHH---HHHc--CCcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAF---AERE--NTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~ 165 (217)
|+|+++....+..+.| ..+. ..+.|+++++||+|+.+.... ...+...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999997665555443 2232 256899999999999642211 11112211 1112 35799999999999999
Q ss_pred HHHHHHHHHH
Q 027894 166 AFTEVLTQIY 175 (217)
Q Consensus 166 ~~~~i~~~~~ 175 (217)
+|++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987664
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=2.7e-21 Score=156.11 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc-------CCCC-------CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE-------FSLE-------SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI 78 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (217)
.++|+++|++++|||||+++|++.. +... .....+.+.......+......+.+|||||++.|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998741 1100 0011223333333334334467899999999999888
Q ss_pred hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCccc---CCHHHHHHHHHHcC-----
Q 027894 79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCA---VSTEDAKAFAEREN----- 149 (217)
Q Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~----- 149 (217)
...++..+|++++|+|+++....+..+.| ..+.. .++| +++++||+|+.+... ...++..+++...+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 88899999999999999986554444433 33332 3577 689999999864211 12245566776665
Q ss_pred CcEEEeccCCCCC----------HHHHHHHHHHHHH
Q 027894 150 TFFMETSALESMN----------VENAFTEVLTQIY 175 (217)
Q Consensus 150 ~~~~~~Sa~~~~~----------v~~~~~~i~~~~~ 175 (217)
++++++||+++.| +.++++.|.+.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 7777777766543
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=4.4e-21 Score=159.24 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=83.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCC----------------------CCCcccceeEEEEEEEECCeEEEEEEEeC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSL----------------------ESKSTIGVEFATRSIRVEDKIVKAQIWDT 69 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
...+|+++|++|+|||||+++|+...-.. ......+.......+.+.+ ..+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 46899999999999999999996211000 0001112222233344444 67999999
Q ss_pred CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
||+..+...+..+++.+|++++|+|++++.+.+....|.. +.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999999877776655533 332 5689999999999853
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=2.8e-21 Score=154.19 Aligned_cols=147 Identities=10% Similarity=0.051 Sum_probs=106.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 94 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (217)
+|+++|++++|||||+++|+. ...+.+..... +......+.+|||||++.|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999981 11222222222 33333569999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHhccCCCCCcE-EEEEe-CCCCCCcccCCH--HHHHHHHHHc---CCcEEE--eccCC---CCC
Q 027894 95 VTRHVTFENVERWLKELRGHTDSNIVI-MLVGN-KADLRHLCAVST--EDAKAFAERE---NTFFME--TSALE---SMN 162 (217)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 162 (217)
++. .+.....++..+.. .+.|. ++++| |+|+ +...... +++.+++... .+++++ +||++ ++|
T Consensus 93 -~~g-~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCC-CcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 543 34444555554443 34676 88899 9998 4322221 4455555544 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 027894 163 VENAFTEVLTQIYHV 177 (217)
Q Consensus 163 v~~~~~~i~~~~~~~ 177 (217)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999988765
No 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.5e-21 Score=141.28 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=87.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC---CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcC-
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRG- 85 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 85 (217)
....++|+++|.+|||||||+++|.+..+... ..++.+. +.....+.+|||||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999999876441 1122211 1133568999999998887777777765
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCCCcEEEEEeCCCCCCcc
Q 027894 86 ---AVGALLVYDVT-RHVTFENVERWLKELRGH----TDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 86 ---~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~iiv~nK~D~~~~~ 134 (217)
+|++++|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999888887766543 23579999999999997543
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=2.2e-21 Score=157.04 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=102.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC--------cCCCC--C-----CcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN--------EFSLE--S-----KSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
....++|+++|++++|||||+++|++. .+... . ....+.+.......+......+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345799999999999999999999873 11110 0 00122222223333433346789999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCccc---CCHHHHHHHHHHcC-
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCA---VSTEDAKAFAEREN- 149 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~- 149 (217)
|...+..++..+|++++|+|++++...+. ..++..+.. .+.| +++++||+|+..... ...++..+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888889999999999999998764333 344444443 3577 889999999864211 11234556666655
Q ss_pred ----CcEEEeccCCCCC
Q 027894 150 ----TFFMETSALESMN 162 (217)
Q Consensus 150 ----~~~~~~Sa~~~~~ 162 (217)
++++++||+++.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 6899999999987
No 163
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=4.7e-21 Score=150.09 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=95.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHhccCC-CCCcEEEEEeCCC
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRGHTD-SNIVIMLVGNKAD 129 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~~-~~~p~iiv~nK~D 129 (217)
.+.+.+|||+|++.++..|..++++++++|+|||++ +..++.+...|+..+..... .+.|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999998 67888888888877765543 6899999999999
Q ss_pred CCCcc---------------cCCHHHHHHHHHH---------------------------cCCcEEEeccCCCCCHHHHH
Q 027894 130 LRHLC---------------AVSTEDAKAFAER---------------------------ENTFFMETSALESMNVENAF 167 (217)
Q Consensus 130 ~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~~v~~~~ 167 (217)
+..++ ....+++.+++.. ..+.+++|||++..+++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 84311 1245555554432 23678999999999999999
Q ss_pred HHHHHHHHH
Q 027894 168 TEVLTQIYH 176 (217)
Q Consensus 168 ~~i~~~~~~ 176 (217)
..+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.7e-20 Score=157.49 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=107.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC----cccceeEEEEEE------------EECCeEEEEEEEeCCCchhhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK----STIGVEFATRSI------------RVEDKIVKAQIWDTAGQERYR 76 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~~ 76 (217)
.++|+++|++++|||||+++|.+..+..... .+.+..+..... ........+.+|||||++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4789999999999999999998875533221 122222111100 000011258999999999999
Q ss_pred hhhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-------------H--
Q 027894 77 AITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-------------T-- 138 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-------------~-- 138 (217)
..+..+++.+|++++|+|+++ +.+++.+.. +.. .+.|+++++||+|+....... .
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 888888999999999999999 555544432 222 568999999999996421110 0
Q ss_pred -H-------HHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 139 -E-------DAKAFAEREN---------------TFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 139 -~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
+ +........+ ++++++||++|.|+++++++|...+....
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111122222 37999999999999999999998876544
No 165
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=2.7e-21 Score=158.69 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=102.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCC--------chhhhhhhHh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAG--------QERYRAITSA 81 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~ 81 (217)
.....+|+++|.+|||||||+|+|++..+.... .+.+.+..............+.+||||| ++.+...+..
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 344689999999999999999999998764322 3344444444444554456799999999 7778888888
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCC-cEEEeccCCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENT-FFMETSALES 160 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 160 (217)
+++.+|++++|+|..+..+.. ..++..+.. ..+.|+++|+||+|+.... ....++.. .++ .++++||+++
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~~-lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFYS-LGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSGG-GSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHHH-cCCCceEEeecccc
Confidence 999999999999987754332 233333322 2579999999999985421 11112221 232 4679999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027894 161 MNVENAFTEVLTQIY 175 (217)
Q Consensus 161 ~~v~~~~~~i~~~~~ 175 (217)
.|+.++++.+.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTHHHHHHHHHTTGG
T ss_pred cchHHHHHHHHhhcc
Confidence 999999999987653
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=6.5e-22 Score=161.39 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=103.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC--cCCCCC-----------------------------CcccceeEEEEEEEECC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLES-----------------------------KSTIGVEFATRSIRVED 59 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|+.++|||||+++|+.. .+.... ....+.+.....+ ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence 35689999999999999999999875 221110 1122222222233 33
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHH-------HHHHhccCCCC-CcEEEEEeCCCCC
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW-------LKELRGHTDSN-IVIMLVGNKADLR 131 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-------~~~l~~~~~~~-~p~iiv~nK~D~~ 131 (217)
....+.+|||||++.|...+..++..+|++++|+|+++ .+|+....| +..+.. .+ .|+++++||+|+.
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLT 157 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCC
Confidence 34679999999999999999999999999999999998 666643322 222221 23 4689999999996
Q ss_pred Ccc------cCCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 027894 132 HLC------AVSTEDAKAFAEREN-----TFFMETSALESMNVENAFT 168 (217)
Q Consensus 132 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 168 (217)
+.. ....+++..++...+ ++++++||++|+|+.++++
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 521 112355666776665 6799999999999986654
No 167
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=6.1e-20 Score=146.85 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=101.6
Q ss_pred EEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHhccC-CCCCcE
Q 027894 53 RSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRGHT-DSNIVI 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~ 121 (217)
..+.+.+ +.+.+|||+|++.++..|..++++++++|+|||+++ ..+++.+..|+..+.... ..+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 3444554 789999999999999999999999999999999999 889999999999887753 368999
Q ss_pred EEEEeCCCCCCccc---C---------------------------CHHHHHHHH-----HH--------cCCcEEEeccC
Q 027894 122 MLVGNKADLRHLCA---V---------------------------STEDAKAFA-----ER--------ENTFFMETSAL 158 (217)
Q Consensus 122 iiv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 158 (217)
+||+||+|+..++. + ..+++..++ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854321 1 134555553 21 24668899999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcc
Q 027894 159 ESMNVENAFTEVLTQIYHVVSRK 181 (217)
Q Consensus 159 ~~~~v~~~~~~i~~~~~~~~~~~ 181 (217)
++.||+++|.++.+.+.....+.
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~~ 390 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLRQ 390 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887765544
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=1.8e-21 Score=159.95 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=91.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CCC-----------------------------CCCcccceeEEEEEEEECC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSL-----------------------------ESKSTIGVEFATRSIRVED 59 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|+.++|||||+++|+... +.. ......+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 467999999999999999999997521 110 0001112222222333333
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcc-
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLC- 134 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~- 134 (217)
..+.+|||||++.|...+...+..+|++|+|+|+++.. +|+....+...+......++| +++++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 67899999999999988888899999999999999863 332211222222211124576 99999999995321
Q ss_pred -----cCCHHHHHHHHHHc-------CCcEEEeccCCCCCHHHHH
Q 027894 135 -----AVSTEDAKAFAERE-------NTFFMETSALESMNVENAF 167 (217)
Q Consensus 135 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~ 167 (217)
....++...++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223456666655 4569999999999998866
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.8e-21 Score=160.74 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=101.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-------------------------------CcccceeEEEEEEEECC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-------------------------------KSTIGVEFATRSIRVED 59 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|++|+|||||+++|++....... ....+.+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 34789999999999999999999876332111 0122222223333333
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TF---ENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
...+.+|||||++.|...+..++..+|++|+|+|++++. ++ ......+..+.. . ...|+|+|+||+|+.+.
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-T-TCCEEEEEEECTTTTTT
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-c-CCCeEEEEEecccccch
Confidence 367899999999999999999999999999999998752 11 011111122221 1 22459999999998652
Q ss_pred ccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHHHH
Q 027894 134 CAVS----TEDAKAFAEREN-----TFFMETSALESMNVENAF 167 (217)
Q Consensus 134 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 167 (217)
.+.. .++...++...+ ++++++||++|.|+.++.
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 2222 233344444443 589999999999998763
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=2.9e-22 Score=164.60 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=105.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL 91 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (217)
..++|+++|++++|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.|...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 357899999999999999999988665443333333322222233333 468999999999999888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc--cCCHH--HHHHHHHHc--CCcEEEeccCCCCCHHH
Q 027894 92 VYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC--AVSTE--DAKAFAERE--NTFFMETSALESMNVEN 165 (217)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 165 (217)
|+|++++...+..+.| ..+.. .+.|+++++||+|+.... .+..+ +...++..+ .++++++||++|.|+++
T Consensus 81 VVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 9999884322222222 22222 568999999999996421 11100 000011222 26899999999999999
Q ss_pred HHHHHHH
Q 027894 166 AFTEVLT 172 (217)
Q Consensus 166 ~~~~i~~ 172 (217)
+|++|..
T Consensus 157 Lle~I~~ 163 (501)
T 1zo1_I 157 LLDAILL 163 (501)
T ss_dssp HHHHTTT
T ss_pred hhhhhhh
Confidence 9999864
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1.3e-20 Score=146.59 Aligned_cols=164 Identities=12% Similarity=0.093 Sum_probs=105.8
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC------Ccc----------------------ccee------------
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES------KST----------------------IGVE------------ 49 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~------~~~----------------------~~~~------------ 49 (217)
....++|+|+|.+|+|||||+++|++..+.+.. .++ .+.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999998874321 111 0000
Q ss_pred -----------EEEEEEEECCeEEEEEEEeCCCch-------------hhhhhhHhhhcCCcEEE-EEEeCCChhhHHHH
Q 027894 50 -----------FATRSIRVEDKIVKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDVTRHVTFENV 104 (217)
Q Consensus 50 -----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~ 104 (217)
.....+... ....+.+|||||.. .+......+++.++.++ +|+|+++..+..+.
T Consensus 103 i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000001011 12568999999953 45566777888888766 79999876544443
Q ss_pred HHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH--cC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 105 ERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER--EN-TFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 105 ~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
..++..+.. .+.|+++|+||+|+.+......+........ .+ .+++++||+++.|++++|+++.+.....
T Consensus 182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 345554432 5689999999999975433233222210001 12 3688999999999999999998754433
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=3.8e-20 Score=162.55 Aligned_cols=162 Identities=17% Similarity=0.106 Sum_probs=108.5
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCc-------CCC-------CCCcccceeEEEEEEEECCeEEEEEEEeCCCchh
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE-------FSL-------ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER 74 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (217)
.....++|+++|++++|||||+++|++.. +.. ....+.+++.....+.+......+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998741 000 0011223332222333444446789999999999
Q ss_pred hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCccc---CCHHHHHHHHHHcC-
Q 027894 75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLCA---VSTEDAKAFAEREN- 149 (217)
Q Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~- 149 (217)
|......++..+|++|+|+|++++...+.. .++..+.. .++| +|+++||+|+.+... ...++...++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 998888899999999999999986543332 33333332 3577 789999999964221 12245566666665
Q ss_pred ----CcEEEeccCCC--------CCHHHHHHHHHHHH
Q 027894 150 ----TFFMETSALES--------MNVENAFTEVLTQI 174 (217)
Q Consensus 150 ----~~~~~~Sa~~~--------~~v~~~~~~i~~~~ 174 (217)
++++++||+++ .|+.++++.|.+.+
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 45777777766544
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=2e-19 Score=132.87 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=99.6
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch----------hhhhhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE----------RYRAIT 79 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 79 (217)
.....+|+++|++|||||||+++|.+..+.....++.+.......+.+.+ .+.+|||||.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998764333334444433333333333 46899999963 233333
Q ss_pred Hhhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHHcC--C
Q 027894 80 SAYY---RGAVGALLVYDVTRHVTFEN--VERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAEREN--T 150 (217)
Q Consensus 80 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~--~ 150 (217)
..++ ..++++++++|++++.+... +..|+ .. .+.|+++++||+|+....+ ...+.+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3444 57899999999998765432 22232 21 4688999999999754211 11234444554443 5
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 151 FFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 151 ~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.++++|++++.|+++++++|.+.+.
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999887654
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=9.6e-20 Score=149.36 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=101.4
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc--CCCC-----------------------------CCcccceeEEEEEEEECC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE--FSLE-----------------------------SKSTIGVEFATRSIRVED 59 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 59 (217)
...++|+++|++++|||||+++|++.. +... .....+.+.....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-- 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence 356999999999999999999998741 1110 0011222222223333
Q ss_pred eEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH----HHHHHHHHHHhccCCCCCc-EEEEEeCCCCC
Q 027894 60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TF----ENVERWLKELRGHTDSNIV-IMLVGNKADLR 131 (217)
Q Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~----~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~ 131 (217)
....+.+|||||++.|...+..++..+|++++|+|+++.. +| +..+.+ ..+.. .+.| +++|+||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH---TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH---cCCCeEEEEEEccccc
Confidence 3367999999999999999999999999999999998763 22 222222 22222 3455 89999999996
Q ss_pred Cccc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q 027894 132 HLCA----VSTEDAKAFAEREN-----TFFMETSALESMNVENA 166 (217)
Q Consensus 132 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 166 (217)
+..+ ...++...++...+ ++++++||+++.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3111 12234555666555 68999999999998754
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=6.9e-19 Score=150.14 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=82.9
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCC------------------cccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESK------------------STIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.....+|+++|+.|+|||||+++|++........ ...++......+... .+.+.+|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence 3456899999999999999999998543221100 112222333333333 37789999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+..+...+..+++.+|++++|+|+++....... .++..+.. .+.|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence 999988889999999999999999876554433 33344433 468999999999985
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=1e-18 Score=133.57 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=84.1
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC-CCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhh------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYY------ 83 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~------ 83 (217)
...++|+++|.+|+|||||+++|++...... ..+..+.......+..++ ..+.+|||||+..+......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3579999999999999999999999875332 223333444445555665 4789999999866544333333
Q ss_pred ---cCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCC--CCcEEEEEeCCCCCCcccCC
Q 027894 84 ---RGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDS--NIVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 84 ---~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~--~~p~iiv~nK~D~~~~~~~~ 137 (217)
..+|++++|++++... +... ..|+..+...... ..|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 2789999999987654 3322 3566666554332 24899999999996444443
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=1.4e-18 Score=148.86 Aligned_cols=165 Identities=13% Similarity=0.214 Sum_probs=110.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-Ccccce------------eE----------------------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGV------------EF---------------------------- 50 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~------------~~---------------------------- 50 (217)
..++|+|+|.+|+|||||+|+|++..+.+.. .+++.. +.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999998765432 222210 00
Q ss_pred -------------EEEEEEECCeE--EEEEEEeCCCchh---hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHh
Q 027894 51 -------------ATRSIRVEDKI--VKAQIWDTAGQER---YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR 112 (217)
Q Consensus 51 -------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~ 112 (217)
....+.++... ..+.+|||||... ....+..+++.+|++++|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111100 2489999999654 34556678899999999999999888777766655543
Q ss_pred ccCCCCCcEEEEEeCCCCCCcccCCHH----------HHHH-----HHHH--------cCCcEEEeccC-----------
Q 027894 113 GHTDSNIVIMLVGNKADLRHLCAVSTE----------DAKA-----FAER--------ENTFFMETSAL----------- 158 (217)
Q Consensus 113 ~~~~~~~p~iiv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~----------- 158 (217)
. .+.|+++|+||+|+......+.+ .... +... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 35789999999998643311111 1111 1111 12469999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHHhh
Q 027894 159 ---ESMNVENAFTEVLTQIYHVVS 179 (217)
Q Consensus 159 ---~~~~v~~~~~~i~~~~~~~~~ 179 (217)
++.|++++++.+.+.+...+.
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999988765543
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=8.6e-19 Score=141.27 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh----hhhhhHh---hhcCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER----YRAITSA---YYRGA 86 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~ 86 (217)
..|+++|++|||||||++.|++........+..+.......+..++ ...+.+||+||... +..+... .+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999998753222222222333333444443 24579999999632 1112122 24579
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCC--CCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTD--SNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
+.+++++|++ ..++.++..+...+..... ...|.++|+||+|+... ...++....+...+++++.+||++++|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999998 5667777766666554321 35788999999998653 22334445555567899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027894 165 NAFTEVLTQIYHVV 178 (217)
Q Consensus 165 ~~~~~i~~~~~~~~ 178 (217)
+++++|.+.+.+..
T Consensus 314 eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 314 ALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=2.5e-18 Score=147.22 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=86.3
Q ss_pred CCCCCeeeEEEEEcCCCCChHHHHHHHhhCcCCCC------------------CCcccceeEEEEEEEECCeEEEEEEEe
Q 027894 7 DEDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE------------------SKSTIGVEFATRSIRVEDKIVKAQIWD 68 (217)
Q Consensus 7 ~~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D 68 (217)
........+|+++|++|+|||||+++|+....... .....++......+.+.+ ..+.+||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 34456789999999999999999999984211000 011112222222333443 6789999
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
|||+..|...+..+++.+|++++|+|+++..+.+....|..... .+.|+++|+||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----TTCCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----cCCCEEEEEECCCccc
Confidence 99999998889999999999999999999888777766654332 4789999999999853
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=2.1e-19 Score=143.38 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=103.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEE--------------------------------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-------------------------------------- 53 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 53 (217)
...+|+|+|.+|||||||+++|++..+.+....+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 455999999999999999999999877443322221000000
Q ss_pred --------------EEEE-CCeEEEEEEEeCCCchhh-------------hhhhHhhhcCCcEEEEEEeCCChhhHHHHH
Q 027894 54 --------------SIRV-EDKIVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDVTRHVTFENVE 105 (217)
Q Consensus 54 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 105 (217)
.+.+ ......+.+|||||...+ ......++..+|++++++|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 011235899999997654 566778899999999999876543221 2
Q ss_pred HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 027894 106 RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALESMNVENAFTEV 170 (217)
Q Consensus 106 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 170 (217)
.|+..+......+.|+++|+||+|+........+....+....+.+|+.++++++.++++.+..+
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 33444444444678999999999997655444444444444567889999999887777655443
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.9e-20 Score=157.60 Aligned_cols=150 Identities=22% Similarity=0.203 Sum_probs=82.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCC-------------------------------CCCcccceeEEEEEEEEC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSL-------------------------------ESKSTIGVEFATRSIRVE 58 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 58 (217)
....++|+++|++++|||||+++|+...... ...+..+.+..... +.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EE
Confidence 4467899999999999999999996531100 00112222222222 33
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHhccCCCCCc-EEEEEeCCCCC
Q 027894 59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TF---ENVERWLKELRGHTDSNIV-IMLVGNKADLR 131 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~ 131 (217)
.....+.||||||++.|...+...+..+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 33467899999999999888888899999999999998642 11 111111222222 3455 89999999986
Q ss_pred CcccC----CHHHHHHHH-HHcCC-----cEEEeccCCCCCHH
Q 027894 132 HLCAV----STEDAKAFA-ERENT-----FFMETSALESMNVE 164 (217)
Q Consensus 132 ~~~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~ 164 (217)
+.... ...++..++ ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 42111 123334444 44454 69999999999998
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=1e-18 Score=145.26 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=78.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------------------CcccceeE--EEEEEEECCeEEEEEEEe
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------------------KSTIGVEF--ATRSIRVEDKIVKAQIWD 68 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------------------~~~~~~~~--~~~~~~~~~~~~~~~l~D 68 (217)
....+|+++|++|+|||||+++|+...-.... ....+++. ....+.+.+ ..+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 35689999999999999999999874211100 00111111 112233333 6789999
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
|||+..|......+++.+|++++|+|+++...... ..++..+. ..++|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 99999988888889999999999999988654322 22333332 25789999999999853
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=3.2e-18 Score=134.10 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=98.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce-----eEEEE--------------------------------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV-----EFATR-------------------------------- 53 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~-----~~~~~-------------------------------- 53 (217)
...++|+|+|.+|+|||||+|+|++..+.+......+. .....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999998763322100000 00000
Q ss_pred --------------------EEE-ECCeEEEEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEEeCCChh
Q 027894 54 --------------------SIR-VEDKIVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDVTRHV 99 (217)
Q Consensus 54 --------------------~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 99 (217)
.+. .......+.+|||||... +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000 011124689999999642 5566777889999999999975432
Q ss_pred -hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccCC------CCCHHHHHHHHHH
Q 027894 100 -TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSALE------SMNVENAFTEVLT 172 (217)
Q Consensus 100 -s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~i~~ 172 (217)
.......+...+. ..+.|+++|+||+|+........+.........+..++++++.. +.|+.++++.+.+
T Consensus 182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 1111123333333 25689999999999975443222222211111225577776654 6888999988877
Q ss_pred HHHH
Q 027894 173 QIYH 176 (217)
Q Consensus 173 ~~~~ 176 (217)
.+..
T Consensus 259 ~~~~ 262 (315)
T 1jwy_B 259 YFKN 262 (315)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7653
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=1.3e-19 Score=140.96 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=86.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC-cCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCc-------h
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN-EFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQ-------E 73 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~ 73 (217)
....++|+++|++|+|||||+++|.+. .++... .++.........+...+....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 346789999999999999999998875 333222 111111111112222344468899999997 4
Q ss_pred hhhhhhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 74 RYRAITS-------AYYRG-------------AVGALLVYDVTRHVTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 74 ~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.+..... .+++. +++++++.+++. .+++.+. .++..+ . .+.++++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence 4444333 33322 344555555432 1233322 233333 2 4678999999999865
Q ss_pred cccC--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 133 LCAV--STEDAKAFAERENTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 133 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
..++ ..+++.+++..++++++++||+++ +++++|..+.+.+.+..
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 3332 245677888889999999999999 99999999998886443
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=3.2e-17 Score=140.55 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=84.6
Q ss_pred CCCeeeEEEEEcCCCCChHHHHHHHhhCc--CCCC------C----------CcccceeEEEEEEEEC-----CeEEEEE
Q 027894 9 DYDYLYKVVLIGDSGVGKSNLLSRFTRNE--FSLE------S----------KSTIGVEFATRSIRVE-----DKIVKAQ 65 (217)
Q Consensus 9 ~~~~~~~I~vvG~~~~GKtsli~~l~~~~--~~~~------~----------~~~~~~~~~~~~~~~~-----~~~~~~~ 65 (217)
......+|+++|+.|+|||||+++|+... +... . ....++......+.+. +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567899999999999999999997531 1100 0 0111222222223332 2337899
Q ss_pred EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
+|||||+..|...+..+++.+|++++|+|+++....+....|... .. .+.|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-NK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-HH---cCCCEEEEEeCCCccc
Confidence 999999999988888999999999999999988766555555332 22 5689999999999853
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=140.28 Aligned_cols=161 Identities=15% Similarity=0.196 Sum_probs=83.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC--------CcccceeEEEEEEEECCeEEEEEEEeCCCchhhh-----
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES--------KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR----- 76 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----- 76 (217)
....++|+|+|++|+|||||++.|++..+.... ..+.........+...+....+++||++|...+.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 445788999999999999999999998763211 1121111111112223334578999999965431
Q ss_pred --hh------------------hHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 77 --AI------------------TSAYYRGAVGALLVYDVTRH-VTFENVE-RWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 77 --~~------------------~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
.+ ...++.++++.+++|+.... .+++... .|+..+. .+.|+|+|+||+|+....
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 11 12234455544444444332 3444443 4666664 478999999999986544
Q ss_pred cCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 027894 135 AVST--EDAKAFAERENTFFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
++.. .++.+++...+++++++|+.++.++.++|..+.+.+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 4443 566777788899999999999999998877666543
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=3.5e-18 Score=131.13 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=80.5
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCC-CcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhh-------hHhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAI-------TSAY 82 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 82 (217)
...++|+++|.+|+|||||+++|++..+.... ....+.......+...+ ..+.+|||||...+... ...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999998763322 12222222333333444 67999999997554321 1112
Q ss_pred --hcCCcEEEEEEeCCChhhHHHH-HHHHHHHhccCCCC--CcEEEEEeCCCCCCcccCC
Q 027894 83 --YRGAVGALLVYDVTRHVTFENV-ERWLKELRGHTDSN--IVIMLVGNKADLRHLCAVS 137 (217)
Q Consensus 83 --~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~iiv~nK~D~~~~~~~~ 137 (217)
.+.+|++++|+|++.. ++... ..|+..+......+ .|+++|+||+|+.......
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 2468999999998653 23322 35666665443222 6999999999996544333
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=3.8e-17 Score=139.92 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC--cCCCC---C-------------CcccceeEEEEEEEECCeEEEEEEEeCCC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN--EFSLE---S-------------KSTIGVEFATRSIRVEDKIVKAQIWDTAG 71 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 71 (217)
.....+|+++|++|+|||||+++|+.. .+... . ....+.......+.+.+ ..+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 456789999999999999999999852 21100 0 01111112222333444 6789999999
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
+..+...+..+++.+|++++|+|+++..+.+....|.. +.. .+.|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99888888889999999999999999877776666544 332 4689999999999853
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.2e-18 Score=135.65 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=109.3
Q ss_pred HHHHHHhhCcCC-CCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHH
Q 027894 28 NLLSRFTRNEFS-LESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVE 105 (217)
Q Consensus 28 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 105 (217)
+|+.++..+.|. ..+.+|.+..+. ..+..++ .+.+||+ ++++..++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688899999988 778899885544 3222222 6899999 8899999999999999999999999997 788899
Q ss_pred HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 027894 106 RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAEREN--TFFMETSALESMNVENAFTEVLT 172 (217)
Q Consensus 106 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~ 172 (217)
.|+..+.. .++|+++|+||+|+.+.+.+ ++..+++..++ ++++++||+++.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99987765 47999999999999654332 44667777777 89999999999999999987753
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.3e-18 Score=139.78 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCccccee--EEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--FATRSIR-------------------VED-KIVKAQIWDTAG 71 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~--~~~~~~~-------------------~~~-~~~~~~l~Dt~G 71 (217)
++|+++|.+|+|||||+|+|++........+..+.+ .....+. +.+ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999887322222222221 1111111 122 247899999999
Q ss_pred chh----hhhhhH---hhhcCCcEEEEEEeCCCh
Q 027894 72 QER----YRAITS---AYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 72 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~ 98 (217)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 346899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2.6e-17 Score=122.46 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=96.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCccccee--------------EEEEEEEE----------------CCeE
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--------------FATRSIRV----------------EDKI 61 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 61 (217)
...+|+++|.+|||||||+++|+..............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35789999999999999999998763221110000000 00111111 0122
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 141 (217)
..+.+|||+|+-.. ...+....+.+++|+|+.+.... ...+... .+.|+++|+||+|+........++.
T Consensus 109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 56889999995110 01111356889999998765421 1111111 2467899999999865333455666
Q ss_pred HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027894 142 KAFAERE--NTFFMETSALESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 142 ~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 178 (217)
...+... +++++++||+++.|++++|++|.+.+....
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666553 478999999999999999999998876543
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=8.8e-18 Score=133.59 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=94.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcc----cce----------------------e----------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKST----IGV----------------------E---------------- 49 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~----~~~----------------------~---------------- 49 (217)
..++|+|+|.+|+|||||+++|++..+.+..... .+. +
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998874322111 110 0
Q ss_pred -------EEEEEEEE-CCeEEEEEEEeCCCch-------------hhhhhhHhhhcCCc-EEEEEEeCCChhhHHHHHHH
Q 027894 50 -------FATRSIRV-EDKIVKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDVTRHVTFENVERW 107 (217)
Q Consensus 50 -------~~~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~ 107 (217)
.....+.+ ......+.+|||||.. .+..+...++...+ ++++|++.+....-.+...+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00000111 0112568999999952 34556666776655 45556665542221122223
Q ss_pred HHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH--HHHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q 027894 108 LKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA--FAEREN-TFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 108 ~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
+..+. ..+.|+++|+||+|+.+........... +....+ .+++++||+++.|++++++++.+.
T Consensus 190 ~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 190 AKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHC---TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHhC---cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 33333 3578999999999996543322221110 000122 357889999999999999998773
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=8.5e-16 Score=121.42 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=91.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchhhh-
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQERYR- 76 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~- 76 (217)
.++|+++|.+|+|||||+|+|++........+..+.......+.+.+. ...+.+|||||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999997743322222222222223334432 1468999999976542
Q ss_pred ---hh---hHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHH------------------------------
Q 027894 77 ---AI---TSAYYRGAVGALLVYDVTRH----------VTFENVERWLKE------------------------------ 110 (217)
Q Consensus 77 ---~~---~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~------------------------------ 110 (217)
.+ ....++.+|++++|+|+++. +++++++.+...
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 12 23357899999999999862 333333221111
Q ss_pred ----------Hhc-------------------c-CCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEeccC
Q 027894 111 ----------LRG-------------------H-TDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSAL 158 (217)
Q Consensus 111 ----------l~~-------------------~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (217)
+.. . ....+|+++++|+.|...........+..++...+.+++++||+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 111 0 11348999999999964211223566777888889999999965
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=1.3e-15 Score=127.11 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=82.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc------------------C----CCCCCcccceeEEEEEEEECCeEEEEEEEeC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE------------------F----SLESKSTIGVEFATRSIRVEDKIVKAQIWDT 69 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 69 (217)
..-+|+|+|+.++|||||..+|+... + ........++......+.+.+ .++.|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 35789999999999999999996321 0 001112222223333444555 67899999
Q ss_pred CCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
||+..|..-....++-+|++++|+|+...-.-+....|..... .++|.++++||+|..
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDRE 165 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccch
Confidence 9999999889999999999999999998776666666654443 679999999999984
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=1.4e-16 Score=126.69 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=70.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC--HH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS--TE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~--~~ 139 (217)
+.+.+|||||... .....+..+|++++|+|....+.+..+.. . ..+.|+++|+||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~-----~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---G-----VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---T-----SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---h-----HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5789999999432 22334588999999999876654322211 0 1346889999999985422111 11
Q ss_pred HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 140 DAKAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 140 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
+....... ++.+++++||++++|+++++++|.+.+...
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 12222111 257899999999999999999999988653
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.64 E-value=3.1e-18 Score=127.89 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEE------------EEEEEEC-Ce------------------
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA------------TRSIRVE-DK------------------ 60 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 60 (217)
..++|+++|.+|||||||+++|+...+......+.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999987654433333332221 1111111 10
Q ss_pred -EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHH
Q 027894 61 -IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTE 139 (217)
Q Consensus 61 -~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 139 (217)
...+.++|++|.-... ..+-...+..+.++|......... .+... .+.|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 0135555555521000 011122344556666432211100 00011 13677999999998654445666
Q ss_pred HHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 140 DAKAFAERE--NTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 140 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
+...++... +++++++||+++.|++++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 677776654 5789999999999999999999887754
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.64 E-value=7.7e-16 Score=134.39 Aligned_cols=117 Identities=20% Similarity=0.198 Sum_probs=86.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCC----------------CCc--ccceeEEEEEEE------------ECCe
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKS--TIGVEFATRSIR------------VEDK 60 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~----------------~~~--~~~~~~~~~~~~------------~~~~ 60 (217)
....+|+++|+.++|||||+++|+...-... ... |.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4568999999999999999999987521110 011 111111222222 1334
Q ss_pred EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
.+.+.+|||||+..|...+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 6889999999999999999999999999999999999988887766655443 568999999999985
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.3e-14 Score=113.88 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=100.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER-------YRAITSAYY 83 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~ 83 (217)
....+|+++|.||||||||+|+|++........+..+.+.....+.+.+ .+++++||||... ........+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 4467999999999999999999999876555556667777777777877 5689999999421 112223456
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCC--------cccCCHHHHHHHHHHcCCcEE
Q 027894 84 RGAVGALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRH--------LCAVSTEDAKAFAERENTFFM 153 (217)
Q Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~ 153 (217)
+.+|++++|+|++++.. +.+.....+.... ..+.|.++++||.|... ......++.+.+...+.+.--
T Consensus 148 ~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred HhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 88999999999998743 3333333333221 14577788999999732 223456666666665554322
Q ss_pred EeccCCCCCHHHHH
Q 027894 154 ETSALESMNVENAF 167 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~ 167 (217)
++--..+...+++.
T Consensus 226 pv~~~~nv~eddl~ 239 (376)
T 4a9a_A 226 EIAFRCDATVDDLI 239 (376)
T ss_dssp EEEECSCCCHHHHH
T ss_pred CeeecccCCHHHHH
Confidence 22223334444443
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=6e-16 Score=129.25 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=82.7
Q ss_pred CCCCeeeEEEEEcCCCCChHHHHHHHhhCcCC---CCCCcccceeEEEEE-----EEECCe---------------E---
Q 027894 8 EDYDYLYKVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRS-----IRVEDK---------------I--- 61 (217)
Q Consensus 8 ~~~~~~~~I~vvG~~~~GKtsli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~---------------~--- 61 (217)
...+..++|+|+|.+|+|||||+|+|++..+. ....++.+....... +..+.. .
T Consensus 60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 34556799999999999999999999998864 222222211000000 000000 0
Q ss_pred --------------EEEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCC
Q 027894 62 --------------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTD 116 (217)
Q Consensus 62 --------------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~ 116 (217)
..+.+|||||... +...+..++..+|++++|+|+++....+....++..+..
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--- 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--- 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---
Confidence 2589999999754 456667788999999999999886555555566655543
Q ss_pred CCCcEEEEEeCCCCCC
Q 027894 117 SNIVIMLVGNKADLRH 132 (217)
Q Consensus 117 ~~~p~iiv~nK~D~~~ 132 (217)
.+.|+++|+||+|+..
T Consensus 217 ~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVE 232 (550)
T ss_dssp CGGGEEEEEECGGGSC
T ss_pred cCCCEEEEEECCCccC
Confidence 4588999999999864
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=2.1e-15 Score=119.79 Aligned_cols=154 Identities=18% Similarity=0.104 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECC-------------------eEEEEEEEeCCCchh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVED-------------------KIVKAQIWDTAGQER 74 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~ 74 (217)
++|+++|.+|+|||||+++|++........+..+.........+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998753222212112221122222221 235689999999754
Q ss_pred hh-------hhhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHH----------------------------
Q 027894 75 YR-------AITSAYYRGAVGALLVYDVTRH----------VTFENVERWLK---------------------------- 109 (217)
Q Consensus 75 ~~-------~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~---------------------------- 109 (217)
.. ......++.+|++++|+|+++. +.+.++..+..
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 31 2223457899999999999851 22222211100
Q ss_pred -----------HHhcc-------------------C-CCCCcEEEEEeCCCCC--Cc-ccCCHHHHHHHHHHcCCcEEEe
Q 027894 110 -----------ELRGH-------------------T-DSNIVIMLVGNKADLR--HL-CAVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 110 -----------~l~~~-------------------~-~~~~p~iiv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.+... . ...+|+++++||.|.. +. +......+..+++..+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 01110 0 1237999999999842 21 1233566778888889999999
Q ss_pred ccCCCCCHHHHH
Q 027894 156 SALESMNVENAF 167 (217)
Q Consensus 156 Sa~~~~~v~~~~ 167 (217)
||+...++.++.
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998765555443
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=5.8e-16 Score=122.71 Aligned_cols=103 Identities=9% Similarity=0.023 Sum_probs=62.7
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 141 (217)
+.+.++||+|.... .......+|++++|+|++.+...+.+.. .+ .+.|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46899999995321 2334678999999999987643322211 11 24577999999998531110 0111
Q ss_pred HHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 142 KAFAE----------RENTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 142 ~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
..+.. .+..+++.+||++++|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124578999999999999999999987644
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.57 E-value=8.3e-16 Score=130.64 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC--------C---CC-----cccceeEEEEEEEECCeEEEEEEEeCCCchhhhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL--------E---SK-----STIGVEFATRSIRVEDKIVKAQIWDTAGQERYRA 77 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~--------~---~~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (217)
-||+|+|+.++|||||..+|+...-.. . .. ..-+++.....+.+.....+++++||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 479999999999999999986421100 0 00 0002222222223333446789999999999999
Q ss_pred hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
.....++-+|++++|+|+...-.-+....|..... .++|.++++||+|..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccc
Confidence 99999999999999999998765555555544443 468889999999974
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.54 E-value=3.4e-14 Score=108.22 Aligned_cols=112 Identities=13% Similarity=-0.089 Sum_probs=68.5
Q ss_pred EEEEEEeCCCchhhhhhhH------hhhcCCcEEEEEEeCCChhhHHHHHHHHH-HHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 62 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDVTRHVTFENVERWLK-ELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
+.+.+|||||+........ ..+.. +++++++|.....+..+...... ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4689999999865533221 23455 88899998764333222221111 1111111368899999999986432
Q ss_pred cCCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 135 AVSTEDAKA----------------------------FAEREN--TFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 135 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
.. ++..+ ++..++ ++++++||++++|+++++++|.+.+..
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 11 11111 123333 479999999999999999999887653
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=1.5e-14 Score=123.68 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=98.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccce------------------------------------------
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV------------------------------------------ 48 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~------------------------------------------ 48 (217)
...++|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45689999999999999999999998774322111110
Q ss_pred ---------eEEEEEEEECCeEEEEEEEeCCCch-------------hhhhhhHhhh-cCCcEEEEEEeCCChhhHHHHH
Q 027894 49 ---------EFATRSIRVEDKIVKAQIWDTAGQE-------------RYRAITSAYY-RGAVGALLVYDVTRHVTFENVE 105 (217)
Q Consensus 49 ---------~~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~ 105 (217)
......+...+ ...+.++||||-. .+......++ ..+|++++|+|++....-.+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00011111111 1257899999932 2333444444 5789999999998754333332
Q ss_pred HHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH-H-HHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q 027894 106 RWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA-F-AEREN-TFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 106 ~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
.++..+.. .+.|+++|+||+|+............. . ....+ .+++.+||+++.|++++++.+.+.
T Consensus 208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 34444432 568999999999997543332221110 0 00012 357889999999999999998863
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.53 E-value=2.1e-13 Score=117.38 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc--------CCC----------CCCcccceeEEEEEEEECC-----eEEEEEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE--------FSL----------ESKSTIGVEFATRSIRVED-----KIVKAQI 66 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~l 66 (217)
-+..-+|+|+|+.++|||||..+|+... ... ......++.-....+.+.+ ..+.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 3556789999999999999999986421 100 1111222222233333321 2578999
Q ss_pred EeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC
Q 027894 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR 131 (217)
Q Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~ 131 (217)
+||||+-.|..-....++-+|++++|+|+...-..+....|..... .++|.++++||+|..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 9999999999888889999999999999998766555556655554 578999999999974
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=3.5e-15 Score=118.02 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=65.4
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH--H
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST--E 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~--~ 139 (217)
+.+.+|||||...... .....+|++++|+|++....++.+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5789999999654332 24688999999999976543221111 00 1357899999999854211110 1
Q ss_pred HHHHHHHHc-------CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 027894 140 DAKAFAERE-------NTFFMETSALESMNVENAFTEVLTQIYH 176 (217)
Q Consensus 140 ~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 176 (217)
+........ ..+++++||+++.|+++++++|.+.+..
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222221 3568999999999999999999987753
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.44 E-value=1.2e-13 Score=108.97 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=63.0
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 141 (217)
..+.++||+|...-. ......+|.+++++|....+..+.+... + .+.+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i-----~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I-----FELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H-----HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H-----hccccEEEEEchhccCchhHHHHHH
Confidence 578999999964321 1235789999999998654322111111 1 1234577789999743222222222
Q ss_pred HHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 142 KAFAER----------ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 142 ~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
..+... +..+++.+||+++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 1457899999999999999999988764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=2.3e-13 Score=105.79 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=79.2
Q ss_pred chhhhhhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCC-HHHHHHHHHHcC
Q 027894 72 QERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVS-TEDAKAFAEREN 149 (217)
Q Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (217)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667777778999999999999999986 88888999887765 579999999999986533222 344566667778
Q ss_pred CcEEEeccCCCCCHHHHHHHHH
Q 027894 150 TFFMETSALESMNVENAFTEVL 171 (217)
Q Consensus 150 ~~~~~~Sa~~~~~v~~~~~~i~ 171 (217)
++++++||+++.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998763
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.35 E-value=7.5e-13 Score=105.62 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=52.6
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCchhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQERY 75 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 75 (217)
...++|+++|.+|+|||||+|+|++..+.....++.+.......+.+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34689999999999999999999998764444444444444444444432 235899999997654
Q ss_pred hh-------hhHhhhcCCcEEEEEEeCCCh
Q 027894 76 RA-------ITSAYYRGAVGALLVYDVTRH 98 (217)
Q Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~~ 98 (217)
.+ ....+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 33 455678999999999999753
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=2.2e-11 Score=97.30 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=60.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcC-CCCCCcccceeEEEEEEEECCe---------------EEEEEEEeCCCch-
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRVEDK---------------IVKAQIWDTAGQE- 73 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~- 73 (217)
....+|+++|.+|+|||||+|.|++... .....++.+.....-.+.+.+. ...+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999999765 3333344444444444555441 1357999999942
Q ss_pred ------hhhhhhHhhhcCCcEEEEEEeCCC
Q 027894 74 ------RYRAITSAYYRGAVGALLVYDVTR 97 (217)
Q Consensus 74 ------~~~~~~~~~~~~~d~ii~v~d~~~ 97 (217)
.+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 223334556789999999999863
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=93.29 Aligned_cols=102 Identities=9% Similarity=-0.043 Sum_probs=69.5
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHH----HHHhccC-CCCCcEEEEEeCC-CCCCcccCCHHHHHHH
Q 027894 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL----KELRGHT-DSNIVIMLVGNKA-DLRHLCAVSTEDAKAF 144 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~----~~l~~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~ 144 (217)
|+..++.+|..|+.++|++|||+|.+|..-++ ....+ ..+.... ..+.|++|++||. |++. ..+..++.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHH
Confidence 78899999999999999999999999875443 32222 2222221 2678999999995 6754 4555555444
Q ss_pred HH----HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 145 AE----RENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 145 ~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.. ...+.+..|||.+|+|+.+.++|+.+.+.
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 32 13466999999999999999999987653
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.14 E-value=5e-11 Score=90.40 Aligned_cols=105 Identities=9% Similarity=-0.032 Sum_probs=74.3
Q ss_pred CCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHhccC-CCCCcEEEEEeC-CCCCCcccCCHHHHHH
Q 027894 69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE---NVERWLKELRGHT-DSNIVIMLVGNK-ADLRHLCAVSTEDAKA 143 (217)
Q Consensus 69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~l~~~~-~~~~p~iiv~nK-~D~~~~~~~~~~~~~~ 143 (217)
.+||++++..|..|+.++|++|||+|.+|.+-++ ++..+...+.... ..+.|++|++|| .|++. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3578899999999999999999999999976443 2222222232211 267999999997 58754 455555544
Q ss_pred HHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 027894 144 FAER----ENTFFMETSALESMNVENAFTEVLTQIY 175 (217)
Q Consensus 144 ~~~~----~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 175 (217)
.... ..+.+..+||.+|+|+.+.++|+.+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3321 3466999999999999999999998764
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=2.4e-11 Score=96.92 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC-----c-CCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN-----E-FSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AIT 79 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~ 79 (217)
.+|+++|.+|+|||||+|+|++. . ......+ +++.....+.+... +.++||||..... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999986 2 2111222 23333344444432 7999999942111 111
Q ss_pred Hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 80 SAYY--RGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 80 ~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
..++ ...+.++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+++.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 2222 67899999999843211111111 12222356899999999998653322 23344455566777776676
Q ss_pred CCCCCH
Q 027894 158 LESMNV 163 (217)
Q Consensus 158 ~~~~~v 163 (217)
....++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 654443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=3.2e-09 Score=85.51 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc--ccceeEEEEEEEE--CCeEEEEEEEeCCCchhh-------------
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSIRV--EDKIVKAQIWDTAGQERY------------- 75 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~------------- 75 (217)
.++++|+|++|+|||||++.|.+..+...... ..+.......+.. .+....+.++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 36799999999999999999998754321111 1111111122212 222346899999883211
Q ss_pred -hhhh----Hhh---------hcC--CcE-EEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCH
Q 027894 76 -RAIT----SAY---------YRG--AVG-ALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVST 138 (217)
Q Consensus 76 -~~~~----~~~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~ 138 (217)
...+ ..+ ... +|+ ++++.|...+-+..++ .++..+ . .+.|+|+|+||+|.....+...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~-~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---D-SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---C-SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---h-hCCCEEEEEcchhccchHHHHH
Confidence 1111 111 112 233 4555555443332222 222333 2 5789999999999753222111
Q ss_pred --HHHHHHHHHcCCcEEEecc
Q 027894 139 --EDAKAFAERENTFFMETSA 157 (217)
Q Consensus 139 --~~~~~~~~~~~~~~~~~Sa 157 (217)
..+.......++++|.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 1112212335677777774
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=2.6e-11 Score=96.66 Aligned_cols=136 Identities=11% Similarity=0.155 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCC-----CCCcccceeEEEEEEEECCeEEEEEEEeCCCchhhh--------hhhH
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSL-----ESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQERYR--------AITS 80 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~ 80 (217)
.+|+++|.+|+|||||+|+|++..... ......+++.....+.+... +.++||||..... ....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999863211 11122233333344444432 7899999942211 1111
Q ss_pred hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 81 AY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 81 ~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
.+ ....+.++++++......+..+.. +......+.|+++++||.|...... .......+.+..+..+++.++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence 11 256788899998743211111111 1222235689999999999865322 223334444556666555554
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=1.9e-09 Score=85.89 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=72.3
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH----HHH
Q 027894 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA----FAE 146 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~ 146 (217)
..+.|...+..+.+.++++++|+|++++. ..|...+.... .+.|+++|+||+|+.+. ....+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 35789999999999999999999999864 34444444433 47899999999999653 233333433 356
Q ss_pred HcCC---cEEEeccCCCCCHHHHHHHHHHH
Q 027894 147 RENT---FFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 147 ~~~~---~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
..++ .++.+||+++.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999988654
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=1.9e-09 Score=82.24 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCC-------cccceeEEEEEEEEC--CeEEEEEEEeCCCchh---------
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESK-------STIGVEFATRSIRVE--DKIVKAQIWDTAGQER--------- 74 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~--------- 74 (217)
.++++++|++|+|||||++.|.+...+.... ...........+... .....++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999998864332110 000000001111111 1123679999998211
Q ss_pred -h--------hhhhHh----------hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcc
Q 027894 75 -Y--------RAITSA----------YYRGAVGALLVYDVTR-HVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLC 134 (217)
Q Consensus 75 -~--------~~~~~~----------~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~ 134 (217)
. ...... .+..+++.++++|... +-.-.+ ..++..+.. . .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence 0 000000 1223688899998653 222122 233444442 3 8999999999975422
Q ss_pred cCC--HHHHHHHHHHcCCcEEE
Q 027894 135 AVS--TEDAKAFAERENTFFME 154 (217)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~~ 154 (217)
+.. ..........+++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 211 12233344556777664
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.97 E-value=3.9e-10 Score=92.91 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=83.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHh------hCcCCCCC----Ccc-----------cceeEEEEEEE-------------E
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFT------RNEFSLES----KST-----------IGVEFATRSIR-------------V 57 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~------~~~~~~~~----~~~-----------~~~~~~~~~~~-------------~ 57 (217)
....|+++|.+||||||++++|. +....... .+. .+..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 32210000 000 01111110000 0
Q ss_pred CCeEEEEEEEeCCCchhhh-hhh---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcE-EEEEeCCCC
Q 027894 58 EDKIVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVI-MLVGNKADL 130 (217)
Q Consensus 58 ~~~~~~~~l~Dt~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-iiv~nK~D~ 130 (217)
....+++.|+||||..... ..+ ... +..+|.+++|+|+....... .....+.. ..|+ ++|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 0023578999999964221 111 111 23789999999998754321 11222221 1454 788999998
Q ss_pred CCcccCCHHHHHHHHHHcCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 027894 131 RHLCAVSTEDAKAFAERENTFF------------------METSALESMN-VENAFTEVLTQ 173 (217)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~i~~~ 173 (217)
.... . .........+.|+ +.+|+..+.| +.++++++.+.
T Consensus 253 ~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 5321 1 1222333444443 3468888988 98888888765
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.85 E-value=2.8e-09 Score=84.94 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=70.7
Q ss_pred CchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHH----HHH
Q 027894 71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKA----FAE 146 (217)
Q Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~ 146 (217)
.++.|......+++.++++++|+|++++.+ .|...+.... .+.|+++|+||+|+.+. ....+...+ ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 478899999999999999999999999774 2332233222 47899999999999653 233333333 355
Q ss_pred HcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 027894 147 RENT---FFMETSALESMNVENAFTEVLTQI 174 (217)
Q Consensus 147 ~~~~---~~~~~Sa~~~~~v~~~~~~i~~~~ 174 (217)
..+. .++.+||+++.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5676 689999999999999998886643
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=1.4e-08 Score=78.06 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=70.5
Q ss_pred EEeCCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHH
Q 027894 66 IWDTAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAK 142 (217)
Q Consensus 66 l~Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 142 (217)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34578875 44455666788999999999999987754 333332 468999999999986521 112233
Q ss_pred HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027894 143 AFAERENTFFMETSALESMNVENAFTEVLTQIYHV 177 (217)
Q Consensus 143 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 177 (217)
++.+..+++++.+||.++.|++++++.+.+.+...
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44445678999999999999999999888877644
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.80 E-value=1.5e-07 Score=75.85 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCC-cccceeEEE-EEEEECCeEEEEEEEeCCCchhh----hhhh-HhhhcCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFAT-RSIRVEDKIVKAQIWDTAGQERY----RAIT-SAYYRGA 86 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~----~~~~-~~~~~~~ 86 (217)
..++++|++|+|||||+|.+.+...+.... ...+.+... ..+.-......+.+||++|-... .... ..-+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 479999999999999999999853322111 111111000 11111111124789999984211 1111 1122334
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCC-------CcccCCHHHH----HHHH----HHcC--
Q 027894 87 VGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLR-------HLCAVSTEDA----KAFA----EREN-- 149 (217)
Q Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~-- 149 (217)
+..++ ++..... -+.+ .+...+.. .+.|+++|.||.|+. .-......+. .++. .+.+
T Consensus 150 ~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 150 DFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp SEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55554 7765211 1111 12222322 358999999999973 1112233332 3332 1222
Q ss_pred -CcEEEecc--CCCCCHHHHHHHHHHHHHHHh
Q 027894 150 -TFFMETSA--LESMNVENAFTEVLTQIYHVV 178 (217)
Q Consensus 150 -~~~~~~Sa--~~~~~v~~~~~~i~~~~~~~~ 178 (217)
..++.+|+ ..+.|++++.+.+.+.+.+..
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 35788999 556679999988887765443
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=2.4e-08 Score=76.63 Aligned_cols=58 Identities=22% Similarity=0.435 Sum_probs=36.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQ 72 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 72 (217)
...++|+++|.+|+|||||+|+|.+....... ...+.+.....+..+. .+.+|||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCc
Confidence 34689999999999999999999987643322 2222332223333333 4789999994
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.59 E-value=1.4e-08 Score=77.15 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCch
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQE 73 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (217)
++|+++|.+|+|||||+|+|.+...... .++.+.+.....+.... .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 6999999999999999999998765332 22333333223333332 47999999964
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.57 E-value=1.5e-07 Score=76.19 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=52.4
Q ss_pred EEEEEEeCCCchhh-----hhhh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERY-----RAIT-SAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~-----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
+.+.++||+|.... ..+. ......+|.+++|+|+....... .....+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCcc---
Confidence 57899999994221 1111 11234578999999998754322 222333321 234578899999743
Q ss_pred CCHHHHHHHHHHcCCcEEEecc
Q 027894 136 VSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
....+..+....+.|+.+++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 334455666678899877775
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.50 E-value=7.4e-07 Score=72.33 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=48.5
Q ss_pred EEEEEEeCCCchhhh----hhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCC-c-EEEEEeCCCCCCc
Q 027894 62 VKAQIWDTAGQERYR----AITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNI-V-IMLVGNKADLRHL 133 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~iiv~nK~D~~~~ 133 (217)
+.+.++||||..... ..... .+..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence 568999999954321 11111 1236899999999876532 222222332 234 5 788999999743
Q ss_pred ccCCHHHHHHHHHHcCCcEEEe
Q 027894 134 CAVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.......+....+.++.++
T Consensus 253 ---~~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 ---KGGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ---TTHHHHHHHHHSSCCEEEE
T ss_pred ---chHHHHHHHHHHCCCEEEe
Confidence 1123444666677776555
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=3e-07 Score=74.37 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=54.2
Q ss_pred EEEEEEeCCCchh------hhhhhHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCc
Q 027894 62 VKAQIWDTAGQER------YRAITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHL 133 (217)
Q Consensus 62 ~~~~l~Dt~G~~~------~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~ 133 (217)
..+.++||||... +...... .....+.+++|+|+........ ....+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc-
Confidence 5688999999533 1111111 1225689999999987543222 22333221 134678999999743
Q ss_pred ccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 027894 134 CAVSTEDAKAFAERENTFFMETSALESMNV 163 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (217)
....+..+....+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 344566666778999887776 5544
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=2.9e-07 Score=69.90 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=61.5
Q ss_pred CCCch-hhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHHHHHHHH
Q 027894 69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDAKAFAER 147 (217)
Q Consensus 69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 147 (217)
.||+. .........+.++|+++.|+|+.++.+..... +. .. ++|.++|+||+|+.+.. ..+...++...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 46654 22344556778999999999999887643210 11 11 68999999999986521 11223344555
Q ss_pred cCCcEEEeccCCCCCHHHHHHHHHHH
Q 027894 148 ENTFFMETSALESMNVENAFTEVLTQ 173 (217)
Q Consensus 148 ~~~~~~~~Sa~~~~~v~~~~~~i~~~ 173 (217)
.+.++ .+||+++.|++++++.+.+.
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 67888 99999999999998776543
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.33 E-value=3.5e-07 Score=76.69 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=38.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc-ccceeEEEEEE--EE-CCeEEEEEEEeCCCch
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSI--RV-EDKIVKAQIWDTAGQE 73 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~ 73 (217)
...++|+|+|.+|+|||||+|+|++......... +.+.+.....+ .. ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 4568999999999999999999999764211111 11111111111 11 1222468999999953
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.32 E-value=1.5e-06 Score=67.08 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=55.6
Q ss_pred EEEEEEeCCCchh--hhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCC
Q 027894 62 VKAQIWDTAGQER--YRA-ITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRH 132 (217)
Q Consensus 62 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~ 132 (217)
+.+.++||||... ... ... .....+|.+++|+|+.... +.......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5689999999655 211 111 1245789999999986532 22222233322 244 678899999643
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 027894 133 LCAVSTEDAKAFAERENTFFMETSALESMNVEN 165 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 165 (217)
.......+....+.|+.+++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 33445667777888987776 4555543
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=3.8e-07 Score=70.59 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=61.3
Q ss_pred hhhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc--CCHHHHHHHHHHcCCcEE
Q 027894 77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA--VSTEDAKAFAERENTFFM 153 (217)
Q Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (217)
.+.+..+.++|.+++|+|+.+|. +...+++++..... .++|.++|+||+|+.+... ...+....+....+.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 33445689999999999998765 34455666555443 5688999999999965321 012233444455688999
Q ss_pred EeccCCCCCHHHHHH
Q 027894 154 ETSALESMNVENAFT 168 (217)
Q Consensus 154 ~~Sa~~~~~v~~~~~ 168 (217)
.+||.++.|++++++
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998888776554
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.21 E-value=2.5e-06 Score=72.27 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCcCC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNEFS 39 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~~~ 39 (217)
..|+|+|++|||||||++.+.+-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 34999999999999999999987533
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.99 E-value=8e-06 Score=63.87 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCcCCCCCCc---------------------ccceeEEEEEEEEC-------------
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---------------------TIGVEFATRSIRVE------------- 58 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~------------- 58 (217)
.--|+++|++||||||+++.+.+...+..... ..++.+........
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 45789999999999999999876321110000 00110100000000
Q ss_pred CeEEEEEEEeCCCchhhhh----hhH--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCC
Q 027894 59 DKIVKAQIWDTAGQERYRA----ITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRH 132 (217)
Q Consensus 59 ~~~~~~~l~Dt~G~~~~~~----~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~ 132 (217)
.....+.++|++|...... ... ...-..|-.++++|..... ++......+.... ...++++||.|...
T Consensus 209 ~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a 282 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA 282 (328)
T ss_dssp HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS
T ss_pred hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc
Confidence 0113467899999532111 111 1122478889999976553 2223333333211 22367889999632
Q ss_pred cccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 027894 133 LCAVSTEDAKAFAERENTFFMETSALESMNVE 164 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 164 (217)
............+.|+.+++ +|++++
T Consensus 283 ----~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 283 ----RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp ----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred ----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 22345566777788887777 555543
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.99 E-value=2e-05 Score=62.15 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=56.2
Q ss_pred hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccC-CHHHHHHHHHHcCCcEEEeccCC
Q 027894 82 YYRGAVGALLVYDVTRHV-TFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAV-STEDAKAFAERENTFFMETSALE 159 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 159 (217)
.+.++|.+++|.+. +|. +...++.++..... .++|.++|+||+|+.+.... ..++........+++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988665 444 34455666554433 45778999999999653210 01122333445688999999999
Q ss_pred CCCHHHHHHH
Q 027894 160 SMNVENAFTE 169 (217)
Q Consensus 160 ~~~v~~~~~~ 169 (217)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=1.6e-06 Score=71.34 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=63.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCcCCCCCCcccceeEEEEEEEECCeEEEEEEEeCCCchh--hhhhh--------Hh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVEDKIVKAQIWDTAGQER--YRAIT--------SA 81 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~~ 81 (217)
....|+++|.+||||||+.++|........ ..+..+..........+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999976532111 11111000000000011112346789988732 23332 45
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 82 YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
++....+.++|+|.++. +.+....|+..+... ..+++.+-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 56667888999999987 455566666655542 234444433333
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.76 E-value=3e-05 Score=63.02 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.9
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....-|.|+|.+++|||+|+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677999999999999999999864
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.53 E-value=5.3e-05 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887754
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.52 E-value=0.0007 Score=54.91 Aligned_cols=83 Identities=17% Similarity=0.030 Sum_probs=45.2
Q ss_pred EEEEEEeCCCchhhh-hhhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCc-EEEEEeCCCCCCcc
Q 027894 62 VKAQIWDTAGQERYR-AITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIV-IMLVGNKADLRHLC 134 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~iiv~nK~D~~~~~ 134 (217)
+.+.++||||..... .... ..+..++.+++|+|+...... ......+.. ..+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 578999999953321 1111 124468899999998754322 122222221 123 34689999975321
Q ss_pred cCCHHHHHHHHHHcCCcEEEe
Q 027894 135 AVSTEDAKAFAERENTFFMET 155 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.....+....+.|+.++
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 23334555556654333
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=6.6e-05 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.43 E-value=3.5e-05 Score=59.60 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999998754
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.42 E-value=7.8e-05 Score=53.94 Aligned_cols=22 Identities=50% Similarity=0.738 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++|+|++|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.33 E-value=0.00011 Score=52.47 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
++++|++|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998643
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.31 E-value=0.00012 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-|+++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999875
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.00017 Score=52.02 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..--|+|+|++|+|||||++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446899999999999999999864
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.27 E-value=0.00014 Score=52.88 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999988754
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.27 E-value=0.00014 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++|+|++|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.27 E-value=0.00067 Score=54.82 Aligned_cols=85 Identities=18% Similarity=0.041 Sum_probs=46.9
Q ss_pred EEEEEEeCCCchhhhh-hhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYRA-ITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
+.+.++||||...... ... ...-.+|.+++|+|..... +.......+.... ...-+|+||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~--- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDA--- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCcc---
Confidence 5689999999532211 111 1123588899999986432 2222222222111 12456889999643
Q ss_pred CCHHHHHHHHHHcCCcEEEec
Q 027894 136 VSTEDAKAFAERENTFFMETS 156 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~S 156 (217)
.......+....+.|+.++.
T Consensus 252 -~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 -RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -SCHHHHHHHHHHCCCEEEEE
T ss_pred -cHHHHHHHHHHHCCCEEEEe
Confidence 12234556666788866655
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.26 E-value=0.00015 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++|+|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998744
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.25 E-value=0.00014 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.|+++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.24 E-value=0.00015 Score=51.19 Aligned_cols=20 Identities=50% Similarity=0.690 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 027894 15 KVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~ 34 (217)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999654
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.22 E-value=0.00065 Score=52.47 Aligned_cols=22 Identities=59% Similarity=0.869 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 53
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.20 E-value=0.00019 Score=52.20 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=22.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.....|+|+|++|||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999887743
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.0002 Score=51.23 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.18 E-value=0.0002 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-|+++|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999998764
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.18 E-value=0.00022 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998865
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.17 E-value=0.00021 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999988754
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.10 E-value=0.00027 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.-|+|+|++|||||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999987643
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.0003 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998764
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.09 E-value=0.00025 Score=52.33 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.08 E-value=0.0003 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
-++++|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.08 E-value=0.00029 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.07 E-value=0.00031 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.05 E-value=0.00033 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998754
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.04 E-value=0.00032 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999887743
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.04 E-value=0.00033 Score=53.00 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.04 E-value=0.00033 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.03 E-value=0.00035 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.|+++|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.03 E-value=0.00033 Score=52.14 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988753
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.03 E-value=0.00049 Score=48.40 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.|+++|++||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999988653
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.02 E-value=0.00032 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988774
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.02 E-value=0.00033 Score=55.30 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.00 E-value=0.00035 Score=52.95 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 272
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.00 E-value=0.00036 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.00 E-value=0.00038 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++++|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998774
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.00 E-value=0.00039 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|+++|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.00 E-value=0.00038 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.99 E-value=0.00033 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++++|++|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.00039 Score=48.63 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 027894 14 YKVVLIGDSGVGKSNLLSRF 33 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l 33 (217)
.-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.99 E-value=0.00038 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.98 E-value=0.00039 Score=52.58 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988754
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.98 E-value=0.00044 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988754
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.98 E-value=0.00043 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 282
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00044 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 283
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.98 E-value=0.00044 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~ 34 (217)
-.|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.97 E-value=0.0004 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.96 E-value=0.00042 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.96 E-value=0.00043 Score=51.93 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.95 E-value=0.00044 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.94 E-value=0.00044 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999998753
No 289
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.93 E-value=0.00048 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.93 E-value=0.00049 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999998764
No 291
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.92 E-value=0.00041 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.++++|++|+|||||++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987754
No 292
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.91 E-value=0.00048 Score=52.55 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.91 E-value=0.00048 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999988754
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.91 E-value=0.00054 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998855
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.00058 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.|+++|++||||||+.+.|...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.90 E-value=0.00052 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988664
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.90 E-value=0.00053 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999877
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.90 E-value=0.0005 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 299
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.89 E-value=0.00059 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999855
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.88 E-value=0.00055 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.--|+++|++|||||||.+.|.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999887643
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.88 E-value=0.00053 Score=53.20 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=23.2
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.....-|+|+|++|||||||++.+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3445678999999999999999887743
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.88 E-value=0.00053 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.88 E-value=0.0006 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.87 E-value=0.00061 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-|+++|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998764
No 305
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.87 E-value=0.00065 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999988654
No 306
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.86 E-value=0.00034 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=14.9
Q ss_pred EEEEEcCCCCChHHHHHHHh-hC
Q 027894 15 KVVLIGDSGVGKSNLLSRFT-RN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~-~~ 36 (217)
-|+++|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 307
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.85 E-value=0.003 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.85 E-value=0.00067 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999988763
No 309
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.85 E-value=0.00074 Score=48.87 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 310
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.0003 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987753
No 311
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.83 E-value=0.00083 Score=48.43 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
......|+++|.+||||||+.+.|...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344568999999999999999988653
No 312
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.83 E-value=0.0026 Score=43.21 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45999999999999999988654
No 313
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.0059 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
+++.|++|+||||+++.+.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999987743
No 314
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00071 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998864
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.81 E-value=0.00093 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....|+++|++|||||||.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998774
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.79 E-value=0.0007 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
-++++|++|||||||++.+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998873
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.79 E-value=0.00075 Score=48.06 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988663
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.0012 Score=46.97 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.0
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.....|+++|.+||||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988664
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.79 E-value=0.00065 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998743
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.76 E-value=0.00076 Score=50.35 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..-|+++|+.|||||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.75 E-value=0.0011 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 322
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.75 E-value=0.00064 Score=46.77 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999988754
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.74 E-value=0.0007 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999988753
No 324
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.74 E-value=0.00053 Score=53.02 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999887743
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.74 E-value=0.00095 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.74 E-value=0.00095 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|++||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.00094 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|++|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998774
No 328
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.72 E-value=0.00085 Score=48.93 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 329
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.71 E-value=0.00077 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999988753
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.70 E-value=0.00084 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|+|+|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998774
No 331
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.70 E-value=0.001 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
++|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 332
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.69 E-value=0.0011 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.68 E-value=0.00093 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
--|+++|++|||||||++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998865
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.68 E-value=0.0012 Score=46.87 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988764
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.0015 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 336
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.00085 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998854
No 337
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.66 E-value=0.00099 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999988754
No 338
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.65 E-value=0.00099 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988754
No 339
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.65 E-value=0.001 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.--++++|++||||||+++.+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999988663
No 340
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.65 E-value=0.001 Score=46.81 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
+|+++|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999988653
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.64 E-value=0.0013 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.63 E-value=0.0013 Score=45.86 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998866
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 344
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.62 E-value=0.0013 Score=46.46 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...|+++|.+||||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456999999999999999988753
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.62 E-value=0.0018 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....+-|+++|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345577999999999999999988654
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.62 E-value=0.0011 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999998754
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.62 E-value=0.0012 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998865
No 348
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.62 E-value=0.0011 Score=52.77 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998754
No 349
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.0015 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...-|+++|++||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 350
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.62 E-value=0.0017 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999987755
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.0015 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
...+|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999865
No 352
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.61 E-value=0.001 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.0011 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988754
No 354
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0015 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.59 E-value=0.0011 Score=52.75 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|+|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998774
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.58 E-value=0.0011 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...-|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988774
No 357
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.58 E-value=0.001 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|||||||++.+.+-.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 78999999999999999998753
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.57 E-value=0.0012 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhh
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
...-|+++|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 359
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.57 E-value=0.0058 Score=49.58 Aligned_cols=63 Identities=25% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhh------------------CcCCCC---CCcccceeEEEEEEEE---CCeEEEEE
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTR------------------NEFSLE---SKSTIGVEFATRSIRV---EDKIVKAQ 65 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~ 65 (217)
.....=|.|+|..++|||+|+|.|+. ..|... ..-|.|+-.....+.. ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 34677788999999999999996542 122211 1123343333222222 45678899
Q ss_pred EEeCCCc
Q 027894 66 IWDTAGQ 72 (217)
Q Consensus 66 l~Dt~G~ 72 (217)
++||.|.
T Consensus 144 llDTEG~ 150 (457)
T 4ido_A 144 LMDTQGT 150 (457)
T ss_dssp EEEECCB
T ss_pred EEeccCC
Confidence 9999994
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.57 E-value=0.0012 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999998754
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.57 E-value=0.0012 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999988754
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0014 Score=48.15 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 363
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.56 E-value=0.0013 Score=49.24 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
++++|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998743
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.54 E-value=0.0014 Score=48.28 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 365
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.54 E-value=0.0011 Score=48.89 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467999999999999999998775
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.53 E-value=0.0019 Score=46.73 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...|++.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988653
No 367
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0016 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+....
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999887653
No 368
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.53 E-value=0.0014 Score=49.19 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.52 E-value=0.0017 Score=46.74 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999775
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.51 E-value=0.00052 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 371
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.50 E-value=0.0014 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998754
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0016 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 373
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.47 E-value=0.0018 Score=48.61 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
......|+++|++||||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344578999999999999999998664
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.46 E-value=0.0018 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~ 34 (217)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.46 E-value=0.001 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46899999999999999998754
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.46 E-value=0.0018 Score=46.09 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 377
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.45 E-value=0.0024 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0018 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.002 Score=48.21 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
....+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999998866
No 380
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0017 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.--|+++|++||||||+++.+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 346899999999999999988663
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.43 E-value=0.0019 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 382
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.42 E-value=0.0016 Score=54.05 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.|+|+|++|||||||++.+++--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998744
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.42 E-value=0.0018 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.41 E-value=0.0016 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988653
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.40 E-value=0.002 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988763
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.40 E-value=0.002 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988653
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.0016 Score=52.02 Aligned_cols=22 Identities=55% Similarity=0.795 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4799999999999999998774
No 388
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.024 Score=44.06 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.|++.|++|+|||+|++.+....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468999999999999999998743
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.39 E-value=0.0019 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
|+++|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998743
No 390
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.39 E-value=0.0018 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999988753
No 391
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0023 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 367999999999999999998775
No 392
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0022 Score=47.36 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988653
No 393
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.002 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+++|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 394
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.37 E-value=0.0015 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
--++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356899999999999999999764
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.36 E-value=0.002 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|+|||||++.+....
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988543
No 396
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0056 Score=44.93 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
+.+-|++.|.++.|||+|++++.+..
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CceEEEecCcccccHHHHHHHHhccc
Confidence 34555555999999999999998874
No 397
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.35 E-value=0.0019 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.728 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.--|+|+|++|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999998865
No 398
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.35 E-value=0.068 Score=41.25 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHhhCc
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~ 37 (217)
+++.|++|+|||++++.+....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4555669999999999987643
No 399
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.34 E-value=0.002 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|.+||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 400
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.33 E-value=0.0022 Score=45.37 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.003 Score=45.33 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.8
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...+.|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45788999999999999999988764
No 402
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.32 E-value=0.00099 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988754
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.31 E-value=0.0021 Score=45.36 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999865
No 404
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.31 E-value=0.0022 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
+++++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 405
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.31 E-value=0.0024 Score=46.79 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
|+++|+|||||+|....|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999888653
No 406
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0018 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.++|+|++|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999988774
No 407
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.30 E-value=0.0016 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998653
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.29 E-value=0.0028 Score=44.15 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 409
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.28 E-value=0.02 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999998664
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.28 E-value=0.0029 Score=46.10 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999865
No 411
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.24 E-value=0.002 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999887653
No 412
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0026 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.|+++|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998764
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.21 E-value=0.0028 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
...|+++|.+||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0025 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.19 E-value=0.0025 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++|+|++|+|||||++.+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987754
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.19 E-value=0.0029 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999887643
No 417
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.17 E-value=0.0032 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988764
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.15 E-value=0.0031 Score=46.58 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
...-|++.|++||||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999987753
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.14 E-value=0.0031 Score=45.79 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.13 E-value=0.0035 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.+.|++.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 421
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.0032 Score=46.48 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.09 E-value=0.0033 Score=43.11 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 027894 16 VVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~ 34 (217)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999875
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.07 E-value=0.0046 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 424
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.07 E-value=0.013 Score=41.95 Aligned_cols=85 Identities=11% Similarity=-0.096 Sum_probs=55.3
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccC--CCCCcEEEEEeCCCCCCcccCCHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHT--DSNIVIMLVGNKADLRHLCAVSTE 139 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~iiv~nK~D~~~~~~~~~~ 139 (217)
+.+.++|+|+.. .......+..+|.+++++..+... ..+..++..+.... ..+.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 578999999864 233445666799999999876554 66666677776543 245677899999995421 123
Q ss_pred HHHHHHHHcCCcEE
Q 027894 140 DAKAFAERENTFFM 153 (217)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (217)
+..++.+..+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 34455555555443
No 425
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0043 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998854
No 426
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.04 E-value=0.0035 Score=51.46 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998866
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.03 E-value=0.0035 Score=50.90 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998864
No 428
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.02 E-value=0.005 Score=47.24 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=21.7
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
....-+++.|+||+|||+|.+.+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567888999999999999987643
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.01 E-value=0.0043 Score=45.87 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCeeeEEEEEcCCCCChHHHHHHHhh
Q 027894 10 YDYLYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 10 ~~~~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
......|+++|++||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998865
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.01 E-value=0.0038 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.01 E-value=0.0037 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
-.|+++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999886
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.005 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|++|+|||||++.+.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 579999999999999999988543
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0043 Score=47.29 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
.+.|+|.|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998863
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.95 E-value=0.0038 Score=52.65 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999987743
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.92 E-value=0.0044 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-+++.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 436
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.91 E-value=0.0054 Score=41.70 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999987654
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.89 E-value=0.0043 Score=52.29 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988753
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.87 E-value=0.0046 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345999999999999999999764
No 439
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.86 E-value=0.0046 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.|++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999998774
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.86 E-value=0.005 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.|++.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998764
No 441
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.83 E-value=0.0039 Score=52.69 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999987753
No 442
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.82 E-value=0.0066 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999998854
No 443
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.81 E-value=0.0043 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.+++.|+||+|||+++..+...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998887663
No 444
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.81 E-value=0.0047 Score=47.48 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=47.9
Q ss_pred EEEEEEeCCCchhhhh--h--hHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCccc
Q 027894 62 VKAQIWDTAGQERYRA--I--TSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCA 135 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~ 135 (217)
..+.++||+|...... + ....+. ..+.+++|+|.+.. ..++..+...+.. -+ ..-+|+||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence 4689999999643321 1 112222 36778999987643 3344443333321 11 2345679999753
Q ss_pred CCHHHHHHHHHHcCCcEEEec
Q 027894 136 VSTEDAKAFAERENTFFMETS 156 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~S 156 (217)
....+...+...+.|+.+++
T Consensus 254 -~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 -SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -CCHHHHHHHHTCSCCCSEEC
T ss_pred -chhHHHHHHHHHCcCEEEEE
Confidence 22356667777888765544
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.81 E-value=0.006 Score=44.99 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=20.3
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhh
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
...++++++|++||||||+.+.|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998865
No 446
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.80 E-value=0.0059 Score=43.94 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.79 E-value=0.0051 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.|++.|++|+|||+|++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999998774
No 448
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.79 E-value=0.0044 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999887743
No 449
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.79 E-value=0.0037 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999887643
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.77 E-value=0.005 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-++|+|++|+|||||+..+...
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
No 451
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.75 E-value=0.0054 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 358999999999999999987643
No 452
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.75 E-value=0.0058 Score=47.21 Aligned_cols=86 Identities=19% Similarity=0.090 Sum_probs=48.0
Q ss_pred EEEEEEeCCCchhhhh--------hhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCC
Q 027894 62 VKAQIWDTAGQERYRA--------ITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKAD 129 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~--------~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D 129 (217)
..+.++||||...... .... ....++.+++|+|.... .+.+... ..+... .+. .-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~--~~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEA--VNV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHH--SCC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhc--CCC-CEEEEeCCC
Confidence 3589999999522111 1111 11347889999998643 2222222 222221 122 345689999
Q ss_pred CCCcccCCHHHHHHHHHHcCCcEEEecc
Q 027894 130 LRHLCAVSTEDAKAFAERENTFFMETSA 157 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (217)
... ....+..+....+.|+.+++.
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence 643 223466777778888777655
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.74 E-value=0.0076 Score=44.28 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=22.0
Q ss_pred CCCCCCeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 6 ADEDYDYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
++.......-|++.|..||||||+++.|...
T Consensus 14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344445677999999999999999988653
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.0072 Score=50.43 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|++|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999988643
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.71 E-value=0.008 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999988643
No 456
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.70 E-value=0.0064 Score=43.73 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhh
Q 027894 15 KVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~ 35 (217)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.70 E-value=0.0073 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999988643
No 458
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.69 E-value=0.0073 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....+++.|++|+|||+|++.+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999866553
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.68 E-value=0.0061 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..-|+++|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999998764
No 460
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.67 E-value=0.0049 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.64 E-value=0.0064 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~ 34 (217)
.+ .+|+|+.|+|||||++.+.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 4699999999999999876
No 462
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.0067 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.++|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 463
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.53 E-value=0.011 Score=44.63 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.2
Q ss_pred CeeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 11 DYLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 11 ~~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999998774
No 464
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.51 E-value=0.0079 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..+++.|++|+|||+|++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.0097 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHhhCcC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999988654
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.47 E-value=0.0074 Score=45.38 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhC
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
....|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988764
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.47 E-value=0.0084 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988663
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.46 E-value=0.0081 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++|.|++|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988754
No 469
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.46 E-value=0.0084 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999888653
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.45 E-value=0.013 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.++++|++|+|||++++.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 478999999999999999887643
No 471
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0086 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
--|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999774
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.0084 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.+++.|++|+||||+++.+.+.-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987754
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.39 E-value=0.011 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhh
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~ 35 (217)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999987654
No 474
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.39 E-value=0.0086 Score=44.21 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998777553
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.38 E-value=0.0082 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 476
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.38 E-value=0.081 Score=38.20 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=54.8
Q ss_pred EEEEEEeCCCc-hhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHH
Q 027894 62 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTED 140 (217)
Q Consensus 62 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 140 (217)
+.+.++|+|+. ... .....+..+|.+++++.. +..++..+..++..+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56899999886 332 234466789999988875 4555666777777766532 4568899999986420 11344
Q ss_pred HHHHHHHcCCcEE
Q 027894 141 AKAFAERENTFFM 153 (217)
Q Consensus 141 ~~~~~~~~~~~~~ 153 (217)
..+.....+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4555555665544
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.36 E-value=0.01 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999998764
No 478
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0094 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999774
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.32 E-value=0.0063 Score=46.62 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhh
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTR 35 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~ 35 (217)
+-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.30 E-value=0.011 Score=46.21 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 481
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.29 E-value=0.011 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhhCcC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNEF 38 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~~ 38 (217)
.++++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999987543
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.28 E-value=0.011 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999764
No 483
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.01 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999774
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.25 E-value=0.012 Score=42.60 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=16.7
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 027894 16 VVLIGDSGVGKSNLLSRFT 34 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~ 34 (217)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999864
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.23 E-value=0.012 Score=45.46 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988764
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.22 E-value=0.0048 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.|++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999998764
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.21 E-value=0.013 Score=41.15 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.-|++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998854
No 488
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.19 E-value=0.14 Score=37.66 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=58.5
Q ss_pred EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHhccCCCCCcEEEEEeCCCCCCcccCCHHHH
Q 027894 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRGHTDSNIVIMLVGNKADLRHLCAVSTEDA 141 (217)
Q Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 141 (217)
+.+.++|+|+... ......+..+|.+++++.. +..++..+..++..+.........+.+|+|+.+... ....+
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-- 191 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH--
Confidence 5789999988532 2344567789999999885 466677788888888765434456788999998643 23333
Q ss_pred HHHHHHcCCcEEEec
Q 027894 142 KAFAERENTFFMETS 156 (217)
Q Consensus 142 ~~~~~~~~~~~~~~S 156 (217)
.+.+..+.+++.+-
T Consensus 192 -~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 192 -EIEKVIGRPISKRI 205 (245)
T ss_dssp -HHHHHHTSCEEEEE
T ss_pred -HHHHHhCCCeEEEC
Confidence 33344677766543
No 489
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.18 E-value=0.011 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988765
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.18 E-value=0.0095 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
No 491
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.18 E-value=0.012 Score=41.61 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhhC
Q 027894 16 VVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 16 I~vvG~~~~GKtsli~~l~~~ 36 (217)
|+|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 492
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.17 E-value=0.012 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
.-|+|+|++|||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45889999999999999998654
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.15 E-value=0.013 Score=42.75 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhhC
Q 027894 13 LYKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 13 ~~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..-|++.|.+||||||+++.|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999988653
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.012 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.13 E-value=0.0067 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhhCc
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
.++|+|+.|+|||||++.+.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 496
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.012 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
--|++.|+||+|||.|.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45899999999999999999774
No 497
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.10 E-value=0.012 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhhC
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~ 36 (217)
-.+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988764
No 498
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.09 E-value=0.011 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhhCc
Q 027894 14 YKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 14 ~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
-.+++.|++|+|||+|++.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999987643
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.08 E-value=0.007 Score=50.60 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhhCc
Q 027894 12 YLYKVVLIGDSGVGKSNLLSRFTRNE 37 (217)
Q Consensus 12 ~~~~I~vvG~~~~GKtsli~~l~~~~ 37 (217)
....|+++|.+|||||||++.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34579999999999999999987754
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.06 E-value=0.0078 Score=55.55 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhhC
Q 027894 15 KVVLIGDSGVGKSNLLSRFTRN 36 (217)
Q Consensus 15 ~I~vvG~~~~GKtsli~~l~~~ 36 (217)
+|++||++|||||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999988763
Done!