BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027895
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIK|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIL|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
Length = 335
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 132/229 (57%), Gaps = 26/229 (11%)
Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
LS EE+E L + G K +RRD+ VVA NGATTV++TM A++ GI VF TGGIGG
Sbjct: 99 LSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGG 158
Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----------------- 105
VHR EHT DIS+DL EL T V VV AG KSILD+ T EYL
Sbjct: 159 VHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPA 218
Query: 106 ---------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 156
V R+DS + AR + V + L GLV+ PIP + A I +AI A
Sbjct: 219 FFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQA 278
Query: 157 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 205
+ EA + + G TPFLLARV ELTGG SL SNI LV NNA++ ++I+
Sbjct: 279 VAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
Length = 335
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 131/229 (57%), Gaps = 26/229 (11%)
Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
LS EE+E L + G K +RRD+ VVA NGATTV++TM A++ GI VF TGGIGG
Sbjct: 99 LSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGG 158
Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----------------- 105
VHR EHT DIS+DL EL T V VV AG SILD+ T EYL
Sbjct: 159 VHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPA 218
Query: 106 ---------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 156
V R+DS + AR + V + L GLV+ PIP + A I +AI A
Sbjct: 219 FFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQA 278
Query: 157 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 205
+ EA + + G TPFLLARV ELTGG SL SNI LV NNA++ ++I+
Sbjct: 279 VAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna
pdb|4EX9|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna
In Complex With Ribulose 5-phosphate
Length = 316
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 25/220 (11%)
Query: 20 KTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 79
K + RDI +A G GATTV+ T+ A GI VF T GIGGVHR GE T+DIS DL +
Sbjct: 96 KISARDIGGALAGGGLGATTVAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQ 155
Query: 80 LGRTPVAVVSAGIKSILDIPRTLEYL----VPC---------------------RVDSPE 114
+T + VVS G KSILD T EYL VP R+D
Sbjct: 156 FRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVYGYRTDKLAAFVVREADVPVTRMDDLH 215
Query: 115 DCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFL 174
AR + + ++ +++ PI + A ++E+AI AL + ++ I GNA +P+L
Sbjct: 216 TAARAAEAHWQVNGPGTVLLTSPIDEQDAVDEAIVEAAIAEALAQCDQEGIVGNAVSPYL 275
Query: 175 LARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQ 214
+ + +GG+ + +L+ + A + + S AL+ ++ +
Sbjct: 276 MKALARASGGMLPKAGRSLLLSTARVAGEFSAALSAVQAE 315
>pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|B Chain B, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|C Chain C, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|D Chain D, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|E Chain E, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
pdb|1VKM|F Chain F, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like
Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
Length = 297
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 111/221 (50%), Gaps = 35/221 (15%)
Query: 15 GSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDIS 74
G+ K R+I VVA N ATTVSAT+F + +GI V VTGG GGVH +D+S
Sbjct: 86 GA--DKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVS 140
Query: 75 SDLTELGRTPVAVVSAGIKSILDIPRTLEYL----VPC---------------------R 109
DLTE + +VS+GIKSILD+ T E L +P R
Sbjct: 141 QDLTEXSSSRAVLVSSGIKSILDVEATFEXLETLEIPLVGFRTNEFPLFFSRKSGRRVPR 200
Query: 110 VDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNA 169
+++ E+ ++ + + +L L + P+P E+ IE L E E + G
Sbjct: 201 IENVEEVLKIYESXKEXELEKTLXVLNPVPEEYEIPHDEIER-----LLEKIELEVEGKE 255
Query: 170 ETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 210
TPFLL ++ E T G +L +N+AL++ N + +I+V L +
Sbjct: 256 VTPFLLKKLVEXTNGRTLKANLALLEENVKLAGEIAVKLKR 296
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 69 HTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL 105
+++ ++DL L + PV V AGI + D PR L+ L
Sbjct: 230 QSINKAADLINLAKKPVLYVGAGILNHADGPRLLKEL 266
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 38 TTVSATMFFASMVGIPVFVTGGIGGV 63
T V A FAS GIP GGIG +
Sbjct: 371 TAVYAVAEFASRFGIPCIADGGIGNI 396
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 69 HTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL 105
+++ ++DL L + PV V AGI + D PR L+ L
Sbjct: 277 QSINKAADLINLAKKPVLYVGAGILNHADGPRLLKEL 313
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 38 TTVSATMFFASMVGIPVFVTGGIGGV 63
T V A FAS GIP GGIG +
Sbjct: 371 TAVYAVAEFASRFGIPCIADGGIGNI 396
>pdb|3H2Z|A Chain A, The Crystal Structure Of Mannitol-1-Phosphate
Dehydrogenase From Shigella Flexneri
Length = 382
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 73 ISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCR 109
+ D+ +GR P+ +SAG + I + TLEY +P +
Sbjct: 286 LKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHK 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,559,424
Number of Sequences: 62578
Number of extensions: 215776
Number of successful extensions: 581
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 14
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)