Query 027895
Match_columns 217
No_of_seqs 103 out of 472
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 03:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04227 Indigoidine_A: Indigo 100.0 1.2E-89 2.6E-94 617.4 14.4 208 1-208 60-293 (293)
2 COG2313 IndA Uncharacterized e 100.0 2E-86 4.4E-91 588.3 20.3 210 1-211 74-309 (310)
3 KOG3009 Predicted carbohydrate 100.0 2.4E-65 5.1E-70 482.3 11.8 214 1-214 89-330 (614)
4 TIGR00676 fadh2 5,10-methylene 73.3 68 0.0015 28.6 11.7 151 40-209 75-246 (272)
5 cd01948 EAL EAL domain. This d 60.0 19 0.00041 29.6 4.8 57 1-58 153-209 (240)
6 COG0282 ackA Acetate kinase [E 59.4 21 0.00045 34.7 5.5 58 2-61 256-330 (396)
7 cd03109 DTBS Dethiobiotin synt 59.1 75 0.0016 25.1 8.0 86 35-138 10-107 (134)
8 TIGR02645 ARCH_P_rylase putati 57.9 1.1E+02 0.0024 30.5 10.4 170 2-174 132-331 (493)
9 PRK04350 thymidine phosphoryla 57.6 1.2E+02 0.0026 30.3 10.5 174 2-178 127-330 (490)
10 TIGR01303 IMP_DH_rel_1 IMP deh 56.3 20 0.00044 35.0 5.0 54 2-61 274-338 (475)
11 PF08659 KR: KR domain; Inter 55.0 10 0.00023 31.1 2.5 96 54-155 3-111 (181)
12 PRK09072 short chain dehydroge 54.5 27 0.00059 29.4 5.0 75 53-135 7-87 (263)
13 PF05944 Phage_term_smal: Phag 50.1 45 0.00097 27.4 5.4 45 137-185 80-126 (132)
14 TIGR03327 AMP_phos AMP phospho 48.1 2E+02 0.0043 28.9 10.4 179 2-183 133-343 (500)
15 COG2101 SPT15 TATA-box binding 48.0 4.5 9.7E-05 35.4 -0.8 19 87-105 64-82 (185)
16 PRK05926 hypothetical protein; 45.4 32 0.0007 32.4 4.4 37 42-82 211-247 (370)
17 cd02811 IDI-2_FMN Isopentenyl- 45.3 41 0.00089 30.9 5.0 36 26-63 179-214 (326)
18 PF14246 TetR_C_7: AefR-like t 44.6 9.1 0.0002 25.4 0.5 46 109-158 4-49 (55)
19 COG2266 GTP:adenosylcobinamide 44.2 18 0.00038 31.5 2.3 83 42-143 54-142 (177)
20 PRK06101 short chain dehydroge 42.2 57 0.0012 27.2 5.1 90 54-154 4-100 (240)
21 TIGR02643 T_phosphoryl thymidi 41.6 3.4E+02 0.0075 26.7 10.8 143 2-145 49-211 (437)
22 COG0029 NadB Aspartate oxidase 41.3 18 0.00039 36.2 2.1 31 51-81 186-216 (518)
23 smart00052 EAL Putative diguan 41.2 54 0.0012 26.9 4.7 57 1-58 154-210 (241)
24 PRK12311 rpsB 30S ribosomal pr 38.2 45 0.00097 31.4 4.1 25 128-165 152-176 (326)
25 PRK07677 short chain dehydroge 37.7 63 0.0014 27.0 4.6 93 53-154 3-107 (252)
26 PF05589 DUF768: Protein of un 36.1 37 0.0008 24.9 2.6 26 144-169 23-48 (64)
27 TIGR02415 23BDH acetoin reduct 35.6 83 0.0018 26.1 5.0 92 54-153 3-105 (254)
28 COG2984 ABC-type uncharacteriz 35.3 1.3E+02 0.0029 28.5 6.7 59 36-105 94-152 (322)
29 PRK04266 fibrillarin; Provisio 34.7 1.4E+02 0.003 26.1 6.4 67 69-136 100-175 (226)
30 PLN02974 adenosylmethionine-8- 34.7 72 0.0016 33.5 5.3 94 51-154 184-290 (817)
31 cd03148 GATase1_EcHsp31_like T 34.5 21 0.00045 31.4 1.2 47 54-105 100-153 (232)
32 PRK06096 molybdenum transport 34.4 68 0.0015 29.5 4.6 71 4-80 198-281 (284)
33 PRK12744 short chain dehydroge 34.3 97 0.0021 26.0 5.2 65 50-122 7-82 (257)
34 cd04729 NanE N-acetylmannosami 34.2 74 0.0016 27.0 4.6 22 71-93 166-187 (219)
35 COG4974 XerD Site-specific rec 33.3 3.7E+02 0.0081 25.3 9.2 141 3-189 115-265 (300)
36 PRK04020 rps2P 30S ribosomal p 33.2 41 0.0009 29.6 2.9 13 93-105 43-55 (204)
37 PF04993 TfoX_N: TfoX N-termin 32.7 27 0.00059 26.2 1.5 26 137-162 72-97 (97)
38 PRK06552 keto-hydroxyglutarate 32.2 89 0.0019 27.3 4.8 68 3-93 117-185 (213)
39 PRK01130 N-acetylmannosamine-6 32.1 90 0.002 26.5 4.7 14 45-58 133-146 (221)
40 CHL00067 rps2 ribosomal protei 31.1 83 0.0018 27.8 4.5 26 127-165 160-185 (230)
41 TIGR01012 Sa_S2_E_A ribosomal 30.9 38 0.00083 29.6 2.3 13 93-105 37-49 (196)
42 PRK11864 2-ketoisovalerate fer 30.2 4.5E+02 0.0098 24.4 9.6 116 39-158 76-228 (300)
43 PF14601 TFX_C: DNA_binding pr 30.2 1.1E+02 0.0023 23.5 4.3 50 128-184 11-60 (84)
44 PF14542 Acetyltransf_CG: GCN5 29.5 93 0.002 22.7 3.8 44 137-181 29-72 (78)
45 COG1453 Predicted oxidoreducta 28.7 2.5E+02 0.0054 27.4 7.4 143 42-188 187-386 (391)
46 PTZ00254 40S ribosomal protein 28.7 42 0.00092 30.5 2.2 12 94-105 47-58 (249)
47 cd00765 Pyrophosphate_PFK Phos 28.4 6.4E+02 0.014 25.6 12.3 83 3-101 125-212 (550)
48 PRK05354 arginine decarboxylas 28.3 2.4E+02 0.0052 28.9 7.7 110 85-210 147-279 (634)
49 PRK08063 enoyl-(acyl carrier p 27.9 1.1E+02 0.0023 25.3 4.4 79 50-137 3-90 (250)
50 PF01070 FMN_dh: FMN-dependent 27.9 82 0.0018 29.6 4.1 52 42-94 237-291 (356)
51 cd02811 IDI-2_FMN Isopentenyl- 27.8 2.5E+02 0.0054 25.8 7.1 13 46-58 173-185 (326)
52 TIGR01289 LPOR light-dependent 27.7 1.4E+02 0.0031 26.4 5.4 13 53-65 5-17 (314)
53 PRK11359 cyclic-di-GMP phospho 27.4 99 0.0021 30.4 4.7 56 2-58 700-755 (799)
54 cd03147 GATase1_Ydr533c_like T 27.0 38 0.00082 29.7 1.6 40 54-98 98-143 (231)
55 cd08613 GDPD_GDE4_like_1 Glyce 26.9 58 0.0013 30.4 2.9 35 42-79 255-290 (309)
56 PRK07890 short chain dehydroge 26.6 1.6E+02 0.0035 24.4 5.2 94 51-153 5-111 (258)
57 PRK00188 trpD anthranilate pho 26.6 92 0.002 28.8 4.1 60 2-61 49-113 (339)
58 COG0407 HemE Uroporphyrinogen- 26.5 1.2E+02 0.0026 28.8 4.9 79 76-162 235-317 (352)
59 cd01425 RPS2 Ribosomal protein 26.4 1.2E+02 0.0026 25.8 4.5 26 127-165 126-151 (193)
60 PRK06256 biotin synthase; Vali 26.4 4.8E+02 0.01 23.5 10.0 165 3-196 150-319 (336)
61 cd02803 OYE_like_FMN_family Ol 26.1 1.6E+02 0.0035 26.2 5.5 36 142-177 129-170 (327)
62 PRK03202 6-phosphofructokinase 25.9 5.4E+02 0.012 23.9 11.8 81 3-101 52-133 (320)
63 PF00701 DHDPS: Dihydrodipicol 25.6 4.7E+02 0.01 23.1 8.4 108 49-181 33-154 (289)
64 cd00537 MTHFR Methylenetetrahy 25.4 4.7E+02 0.01 23.0 11.7 152 40-210 75-250 (274)
65 PRK00090 bioD dithiobiotin syn 25.4 3.8E+02 0.0083 22.3 7.4 38 51-90 103-141 (222)
66 cd06557 KPHMT-like Ketopantoat 25.2 4.4E+02 0.0096 23.8 8.1 141 42-182 23-192 (254)
67 TIGR02151 IPP_isom_2 isopenten 25.1 1.5E+02 0.0033 27.3 5.2 22 42-63 194-215 (333)
68 KOG1654 Microtubule-associated 25.0 1.8E+02 0.004 23.8 5.0 54 81-136 27-80 (116)
69 PF08415 NRPS: Nonribosomal pe 24.9 50 0.0011 22.8 1.6 18 49-66 21-38 (58)
70 PRK07231 fabG 3-ketoacyl-(acyl 24.7 1.9E+02 0.004 23.8 5.3 78 52-137 6-90 (251)
71 COG3193 GlcG Uncharacterized p 24.5 1.1E+02 0.0025 25.7 3.9 28 138-165 2-29 (141)
72 PRK05820 deoA thymidine phosph 24.3 6.9E+02 0.015 24.6 10.4 142 2-145 50-212 (440)
73 TIGR01273 speA arginine decarb 24.0 7E+02 0.015 25.5 10.1 117 83-211 138-273 (624)
74 PRK11059 regulatory protein Cs 23.9 1E+02 0.0022 30.5 4.0 56 2-58 555-610 (640)
75 PRK06246 fumarate hydratase; P 23.9 2.3E+02 0.005 26.2 6.1 55 144-204 4-61 (280)
76 cd02932 OYE_YqiM_FMN Old yello 23.7 86 0.0019 28.6 3.3 30 142-171 142-174 (336)
77 PRK04155 chaperone protein Hch 23.7 35 0.00076 31.2 0.8 41 54-99 151-197 (287)
78 COG1951 TtdA Tartrate dehydrat 23.7 2.3E+02 0.005 26.7 6.1 54 144-203 5-61 (297)
79 cd07037 TPP_PYR_MenD Pyrimidin 23.6 1.5E+02 0.0032 24.7 4.4 15 80-94 84-98 (162)
80 PRK07478 short chain dehydroge 23.2 1.6E+02 0.0036 24.5 4.7 64 51-122 6-76 (254)
81 PF00107 ADH_zinc_N: Zinc-bind 22.4 58 0.0013 24.4 1.7 51 42-92 5-68 (130)
82 TIGR03811 tyr_de_CO2_Ent tyros 22.4 1.5E+02 0.0032 30.2 4.9 33 125-157 241-273 (608)
83 PRK06179 short chain dehydroge 22.2 3.7E+02 0.0081 22.5 6.8 75 53-137 6-81 (270)
84 cd02020 CMPK Cytidine monophos 22.2 83 0.0018 23.8 2.5 27 32-60 7-33 (147)
85 PRK15389 fumarate hydratase; P 22.1 2.4E+02 0.0051 28.6 6.2 57 142-204 39-99 (536)
86 PF02754 CCG: Cysteine-rich do 22.0 55 0.0012 22.4 1.4 58 40-97 18-85 (85)
87 PF01965 DJ-1_PfpI: DJ-1/PfpI 21.9 24 0.00051 28.0 -0.6 39 54-97 41-85 (147)
88 TIGR01245 trpD anthranilate ph 21.7 1.2E+02 0.0025 28.1 3.8 59 2-60 43-108 (330)
89 PRK07832 short chain dehydroge 21.7 1.7E+02 0.0038 24.8 4.7 13 53-65 2-14 (272)
90 PRK05458 guanosine 5'-monophos 21.0 1.5E+02 0.0033 27.7 4.5 18 45-62 155-172 (326)
91 TIGR03015 pepcterm_ATPase puta 21.0 2.6E+02 0.0056 23.7 5.6 45 144-191 192-237 (269)
92 PRK05567 inosine 5'-monophosph 20.8 1.3E+02 0.0028 29.2 4.0 10 51-60 331-340 (486)
93 PRK07695 transcriptional regul 20.8 71 0.0015 26.7 2.0 18 44-61 142-159 (201)
94 PF11034 DUF2823: Protein of u 20.8 96 0.0021 23.2 2.4 39 172-210 9-48 (68)
95 KOG3191 Predicted N6-DNA-methy 20.8 49 0.0011 29.5 1.1 63 130-197 111-173 (209)
96 PRK05437 isopentenyl pyrophosp 20.7 2.2E+02 0.0049 26.5 5.5 21 42-62 201-221 (352)
97 COG4199 Uncharacterized protei 20.6 1.1E+02 0.0024 27.3 3.2 28 128-155 148-175 (201)
98 PF07805 HipA_N: HipA-like N-t 20.6 55 0.0012 23.6 1.1 19 41-59 47-65 (81)
99 COG0007 CysG Uroporphyrinogen- 20.2 89 0.0019 28.4 2.6 17 42-58 120-146 (244)
No 1
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=100.00 E-value=1.2e-89 Score=617.38 Aligned_cols=208 Identities=63% Similarity=0.891 Sum_probs=157.7
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL 80 (217)
|||+++||++|++.++++.|+|||||++++++|++||||||+||++||++||+||+||||||||||+++|||||+||+||
T Consensus 60 vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL 139 (293)
T PF04227_consen 60 VGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTEL 139 (293)
T ss_dssp ES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHH
T ss_pred EcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHH
Confidence 79999999999997668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI 134 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv 134 (217)
+||||+|||||+|||||||+||||| +|+++|+++|+|++++++|+|++++|+||
T Consensus 140 ~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lv 219 (293)
T PF04227_consen 140 ARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLV 219 (293)
T ss_dssp TTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHHHHHHHHTT--SEEEE
T ss_pred hcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999999999999999999999999 89999999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027895 135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL 208 (217)
Q Consensus 135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~ 208 (217)
+||||+|+++|+++|+++|++|++||+++||+||++|||||++|+|+|+|+|+++|++||+|||++|++||++|
T Consensus 220 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~e~T~G~Sl~aNialv~nNa~~aa~IA~~l 293 (293)
T PF04227_consen 220 ANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARINELTGGKSLEANIALVKNNARLAAQIAVAL 293 (293)
T ss_dssp E----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-86 Score=588.31 Aligned_cols=210 Identities=57% Similarity=0.805 Sum_probs=207.0
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL 80 (217)
|||+++|||.|++. .++.|+|||||+++++.+++||||||+||++|.++||+|||||||||||||+|+|||||+||+||
T Consensus 74 iGLs~eelE~la~~-~~a~KvsrrDl~~vvA~~~~gaTTVAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~EL 152 (310)
T COG2313 74 IGLSKEELELLARE-GNAMKVSRRDLPFVVAEGKNGATTVAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTEL 152 (310)
T ss_pred eecCHHHHHHHhhc-CccceeeccchHHHHhcCcCCcchHHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHH
Confidence 69999999999987 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI 134 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv 134 (217)
+||+|+|||||+||||||++||||| +|.++++|+++|++++++|++|+.+|+||
T Consensus 153 a~T~v~vV~AGaKsILDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lglegg~lV 232 (310)
T COG2313 153 ARTNVTVVCAGAKSILDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGLEGGLLV 232 (310)
T ss_pred hcCCeEEEecCchhhhccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCCCCceEE
Confidence 9999999999999999999999999 88899999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027895 135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQL 211 (217)
Q Consensus 135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~~ 211 (217)
+||+|+++++|.++|+.+|++|+.+|+++||+||++|||||++|.|+|+||||++||+|++|||++|++||++|+++
T Consensus 233 aNPvPee~eip~eeie~~I~~a~~eae~~gi~GK~vTPfLLgkl~elT~GrSL~tNIaLv~nNa~laa~IAv~l~~l 309 (310)
T COG2313 233 ANPVPEEFEIPEEEIEALIERALAEAEALGITGKEVTPFLLGKLVELTGGRSLKTNIALVENNAILAAEIAVALARL 309 (310)
T ss_pred ecCCchhccCCHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhCCccHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=100.00 E-value=2.4e-65 Score=482.29 Aligned_cols=214 Identities=58% Similarity=0.829 Sum_probs=209.8
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL 80 (217)
|||+++||+.||..++.++|+||||+++.+.++++|||||++||++||++||.|||||||||||||++++||+|+||+||
T Consensus 89 iGLt~e~L~~La~~g~~~~kvsrRD~~~v~i~rlvggTtvaaTm~iA~~~gI~vfaTggiggvhr~An~smdisadl~el 168 (614)
T KOG3009|consen 89 IGLTPEELETLASSGPSAVKVSRRDIASVVIVRLVGGTTVAATMIIAHAAGIVVFATGGIGGVHRGANQSMDISADLTEL 168 (614)
T ss_pred ecCCHHHHHHHhhcCccccccccccccccceeeecCCcchhhhhhhcccceEEEEecCCcchhhhccccccchhhhhhhh
Confidence 69999999999998777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccccccccccc----------------------------ccccCCCHHHHHHHHHHHHhcCCCCeE
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYL----------------------------VPCRVDSPEDCARLIDVNMKLKLGSGL 132 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L----------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~ 132 (217)
+||||+|||+|+|||||||+||||| .|+++.++.|++..++.+..++.+.|.
T Consensus 169 grtpvavv~agvksiLdip~tle~letq~V~vvtlgs~gavfpsfftrks~~~~p~~~~s~~ev~k~l~S~~~l~~~~g~ 248 (614)
T KOG3009|consen 169 GRTPVAVVSAGVKSILDIPKTLEYLETQGVVVVTLGSPGAVFPSFFTRKSGCKAPRKLESPQEVAKLLQSNVCLGNEFGT 248 (614)
T ss_pred cCCcceEEecchhhhccchhhhhhhccccEEEEEeCCCCCccccccCcccccCCccccCCHHHHHHHHhhccccCcccce
Confidence 9999999999999999999999999 889999999999999999999999999
Q ss_pred EEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027895 133 VIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLR 212 (217)
Q Consensus 133 lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~~~ 212 (217)
|+++|+|+.+++|.+.|+.+|++|+++|.+++|.||.+|||+|+++.++|.|.|+.+|||||+|||.++.|||..|+.++
T Consensus 249 L~a~piP~~fAad~~~Ieaaik~at~~a~~q~itG~~VTpflla~vl~~t~g~slasniAlVenna~va~~ia~~L~~~k 328 (614)
T KOG3009|consen 249 LGAIPIPEHFAADGPKIEAAIKKATQEAREQNITGKTVTPFLLARVLELTLGVSLASNIALVENNANVASQIAADLCDLK 328 (614)
T ss_pred eeccCChHHhhccchhHHHHHHHHHHHHHHhcccccccchhHHHHHHHHhhcchhHHHHHHHhccccchHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 027895 213 QQ 214 (217)
Q Consensus 213 ~~ 214 (217)
+.
T Consensus 329 ~k 330 (614)
T KOG3009|consen 329 NK 330 (614)
T ss_pred cc
Confidence 64
No 4
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=73.35 E-value=68 Score=28.62 Aligned_cols=151 Identities=14% Similarity=0.111 Sum_probs=89.2
Q ss_pred HHHHHHHHHHCCCc--EEEeccccccc-CCcccccccccchhhhcCC---CeEEEecc----cccccccccccccc----
Q 027895 40 VSATMFFASMVGIP--VFVTGGIGGVH-RHGEHTMDISSDLTELGRT---PVAVVSAG----IKSILDIPRTLEYL---- 105 (217)
Q Consensus 40 VaaTm~lA~~aGI~--VFaTGGiGGVH-rga~~t~DiSaDL~eL~rt---pV~VVcaG----~KsILDi~~TlE~L---- 105 (217)
+-+-+.-++.+||+ +..||.--..+ ......||-|.||.++-+. ++.|-+++ -...-+...-+++|
T Consensus 75 l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~ 154 (272)
T TIGR00676 75 IREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKV 154 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 44555567889998 55677543211 1233468889999987764 45555554 11222333334444
Q ss_pred -------ccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHH
Q 027895 106 -------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARV 178 (217)
Q Consensus 106 -------~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i 178 (217)
..+-+-|++...+.+..-++.|+.-.++...+++.. ... +++-++ +.|=.+.+++++++
T Consensus 155 ~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s----~k~-------~~~~~~---~~Gv~vP~~~~~~l 220 (272)
T TIGR00676 155 DAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMPITN----FKQ-------LLRFAE---RCGAEIPAWLVKRL 220 (272)
T ss_pred HcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccCCcCC----HHH-------HHHHHh---ccCCCCCHHHHHHH
Confidence 555566677777777666666777777777777663 221 222232 77899999999999
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027895 179 NELTGGLSLASNIALVKNNALIGAKISVALA 209 (217)
Q Consensus 179 ~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~ 209 (217)
.+..+.. -++-+....++.++..++.
T Consensus 221 ~~~~~~~-----~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 221 EKYDDDP-----EEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred HhcCCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 8765431 1222335555666655553
No 5
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=59.98 E-value=19 Score=29.55 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (217)
+|.+...++.|..-..+..|+++.-+...... ......+.+-..+|+..||+|.|+|
T Consensus 153 ~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 153 FGTGYSSLSYLKRLPVDYLKIDRSFVRDIETD-PEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CCCcHhhHHHHHhCCCCEEEECHHHHHhHhcC-hhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 36677788888765567889998777554433 4556778888999999999999987
No 6
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=59.38 E-value=21 Score=34.66 Aligned_cols=58 Identities=29% Similarity=0.434 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhcCCCCcccc-----ccchHHHHhcCCCchhhHHHHH-----------HHHHHCCCcEE-Eecccc
Q 027895 2 RLSTEELERLAKLGSKAQKTA-----RRDIAHVVATRGNGATTVSATM-----------FFASMVGIPVF-VTGGIG 61 (217)
Q Consensus 2 Gl~~~ele~la~~~~~~~K~S-----rRDl~~~~a~~~~GaTTVaaTm-----------~lA~~aGI~VF-aTGGiG 61 (217)
|||.+|++.+-....+..-+| .|||..+..++ +++ --|=-| .+|.+-|++.+ -|||||
T Consensus 256 ~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g-~~A-~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIG 330 (396)
T COG0282 256 GMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEG-NEA-KLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIG 330 (396)
T ss_pred CCCHHHHHHHHhhhccccccccccchHHHHHHHhccC-chH-HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccc
Confidence 789999999887544555444 79999999999 653 333333 45777888854 499998
No 7
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=59.12 E-value=75 Score=25.05 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=52.7
Q ss_pred CchhhHHHHHH-HHHHCCCcE-----------EEecccccccCCcccccccccchhhhcCCCeEEEeccccccccccccc
Q 027895 35 NGATTVSATMF-FASMVGIPV-----------FVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTL 102 (217)
Q Consensus 35 ~GaTTVaaTm~-lA~~aGI~V-----------FaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~Tl 102 (217)
+|=|||+.-+. .....|.+| ..-=|.||.+-+-...++ ..|+...-+.|+++|..
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~~d~vliEGaGg~~~p~~~~~~-~~d~~~~~~~~vllV~~------------ 76 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLKPVQTYDFVLVEGAGGLCVPLKEDFT-NADVAKELNLPAILVTS------------ 76 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEecCCCCCEEEEECCCccccCCCCCCC-HHHHHHHhCCCEEEEEc------------
Confidence 77788876433 333456554 566789999987666555 45787777999999976
Q ss_pred cccccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Q 027895 103 EYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPI 138 (217)
Q Consensus 103 E~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPi 138 (217)
.+..+..++...+..-+..|+.---++.|-.
T Consensus 77 -----~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~ 107 (134)
T cd03109 77 -----AGLGSINHAFLTIEAARIKGIILNGVLGNVI 107 (134)
T ss_pred -----CCCCcHhHHHHHHHHHHhcCCceeEEEEccC
Confidence 2344555444444444455655433555533
No 8
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=57.89 E-value=1.1e+02 Score=30.50 Aligned_cols=170 Identities=13% Similarity=0.136 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHhc---CCCCccccccchHHHHhcCCC-chh-hHHHHHHHHHHCCCcEEEecccccccCCccc-----cc
Q 027895 2 RLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GAT-TVSATMFFASMVGIPVFVTGGIGGVHRHGEH-----TM 71 (217)
Q Consensus 2 Gl~~~ele~la~~---~~~~~K~SrRDl~~~~a~~~~-GaT-TVaaTm~lA~~aGI~VFaTGGiGGVHrga~~-----t~ 71 (217)
|||.+|+..|++. .....+.+...+-..+..|.. |-| +++ ...+...+|++|.=+||=|=-|.++.- -+
T Consensus 132 G~t~~Ei~~lt~AM~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~-~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg 210 (493)
T TIGR02645 132 GMTMDEIEALTIAMADTGEMLEWDREPIMDKHSIGGVPGNKTSLI-VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT 210 (493)
T ss_pred CCCHHHHHHHHHHHHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH-HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc
Confidence 8999999998862 112333343333333344443 333 444 556668999999999987766665421 01
Q ss_pred ccccchh----hhcCCCeEEEeccccccc---cccccccccccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCC
Q 027895 72 DISSDLT----ELGRTPVAVVSAGIKSIL---DIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAA 144 (217)
Q Consensus 72 DiSaDL~----eL~rtpV~VVcaG~KsIL---Di~~TlE~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~ 144 (217)
++.-+.. .|.++..+.++.|+..+- |.=.++++ +..+|+...++.-+..++----...+|+=+|+=.---+
T Consensus 211 ~v~ls~e~~~~~ve~~G~~fl~G~a~~l~PAdk~i~~vR~--~l~vds~~li~aSImSKKlA~G~~~lvlDvk~G~gAf~ 288 (493)
T TIGR02645 211 RVALSAEEIKRIVEKVGGCLVWGGALNLAPADDVLIRVER--PLSIDPRAQMLASIMSKKIAAGSTHVLIDIPVGPGAKV 288 (493)
T ss_pred CCCCCHHHHHHHHHHCCEEEEECCCcccCHHHHHHHHHHh--hcCCCcHHHHHHHHHHHHHhcCCCeEEEeccccCCCcC
Confidence 2222222 255788888887765431 11112222 45688876666655454444446789999998776555
Q ss_pred ChHHHHHHHHHHHH-HHHHcCCC------------CccCChHH
Q 027895 145 SGRVIESAIQSALR-EAREKNIT------------GNAETPFL 174 (217)
Q Consensus 145 ~~~~i~~~I~~Al~-eA~~~gi~------------Gk~~TPfl 174 (217)
...+--+-+.+.+. -+++.|++ |+.+=|.|
T Consensus 289 ~~~~~A~~La~~~~~vg~~~G~~~~a~iTdm~qPlG~~iGnal 331 (493)
T TIGR02645 289 RSLQEAERLARLFIELGDRLGVRVECAITYGSQPIGRGIGPAL 331 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHH
Confidence 54443334444433 34455653 77777775
No 9
>PRK04350 thymidine phosphorylase; Provisional
Probab=57.64 E-value=1.2e+02 Score=30.28 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHhc---CCCCccccccchHHHHhcCCC-chhhHHHHHHHHHHCCCcEEEecccccccCCccc-------c
Q 027895 2 RLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEH-------T 70 (217)
Q Consensus 2 Gl~~~ele~la~~---~~~~~K~SrRDl~~~~a~~~~-GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~-------t 70 (217)
|+|.+|+..|++. .......+...+-..+..|.. |.||--....+...+|++|-=+||=|=-|.++.- .
T Consensus 127 G~t~~Ei~~lt~AM~~~g~~l~~~~~~~vDkhgTGGd~g~t~S~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg~ 206 (490)
T PRK04350 127 GLDMDEIEALTRAMVETGERLDWDRPPVVDKHSIGGVPGNRTTLIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLAP 206 (490)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCCCCCeEEecCCCCCCCCCEeHHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhhc
Confidence 8999999998862 112333343333333444544 3333222455668999999999985555665421 1
Q ss_pred cccccch--hhhcCCCeEEEecccccccccccccccc----ccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCC
Q 027895 71 MDISSDL--TELGRTPVAVVSAGIKSILDIPRTLEYL----VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAA 144 (217)
Q Consensus 71 ~DiSaDL--~eL~rtpV~VVcaG~KsILDi~~TlE~L----~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~ 144 (217)
+|.|.|- ..|.++.++++-.|+..+ --...++ -+..+|+...++.-+..++----...+|+=+|.=...-+
T Consensus 207 v~ls~e~~~~~l~~~G~~flfG~a~~l---~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~v 283 (490)
T PRK04350 207 VDLSVEEIKRVVEKVGGCLVWGGAVNL---SPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAKV 283 (490)
T ss_pred CCCCHHHHHHHHHHcCEEEEECCcccc---CHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCcC
Confidence 1112111 124466666665444322 1122222 225688877776666554444446789999998777666
Q ss_pred ChHHHHHHHHHHHH-HHHHcCC------------CCccCChHHHHHH
Q 027895 145 SGRVIESAIQSALR-EAREKNI------------TGNAETPFLLARV 178 (217)
Q Consensus 145 ~~~~i~~~I~~Al~-eA~~~gi------------~Gk~~TPflL~~i 178 (217)
...+.-+.+.+.+. -+++.|+ -|..+-|.+-.+.
T Consensus 284 ~~~~~A~~LA~~~~~vg~~~g~~v~a~lTd~~qPlG~~iGnalEv~e 330 (490)
T PRK04350 284 RSVEEARRLARLFEEVGDRLGLRVECAITDGSQPIGRGIGPALEARD 330 (490)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEECCCCeehhccCCchHHHHH
Confidence 66665566666663 4555565 2677778876543
No 10
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.33 E-value=20 Score=35.02 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhcCCCCcc--------ccccchHHHHhcCCCchhhHHHHHHHH---HHCCCcEEEecccc
Q 027895 2 RLSTEELERLAKLGSKAQK--------TARRDIAHVVATRGNGATTVSATMFFA---SMVGIPVFVTGGIG 61 (217)
Q Consensus 2 Gl~~~ele~la~~~~~~~K--------~SrRDl~~~~a~~~~GaTTVaaTm~lA---~~aGI~VFaTGGiG 61 (217)
+.|.++...|.+.+-+..| |.+|.+ .-.|-.|+.+-+.++ +..|++|+|.|||-
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~------~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~ 338 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMM------TGVGRPQFSAVLECAAEARKLGGHVWADGGVR 338 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCccc------cCCCCchHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 4788999999887777888 777732 123555666666664 66699999999875
No 11
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=55.03 E-value=10 Score=31.12 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=45.0
Q ss_pred EEEecccccccCCcccccccccchhhhcCCCeEEEecccccccccccccccc---------ccccCCCHHHHHHHHHHHH
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL---------VPCRVDSPEDCARLIDVNM 124 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TlE~L---------~~~~~d~~~e~A~~~~~~~ 124 (217)
+.+|||.||+.+ -+..-|.+-+...+++++--+..=-+....++.| ....+.+++++.+++..-.
T Consensus 3 ylitGG~gglg~------~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~ 76 (181)
T PF08659_consen 3 YLITGGLGGLGQ------SLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLR 76 (181)
T ss_dssp EEEETTTSHHHH------HHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSH
T ss_pred EEEECCccHHHH------HHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHH
Confidence 578888888733 4666666666666666655421111111122222 3344668999988886433
Q ss_pred hcC-CCCeEEEEeCCCcCCC---CChHHHHHHHHH
Q 027895 125 KLK-LGSGLVIGVPIPREHA---ASGRVIESAIQS 155 (217)
Q Consensus 125 ~l~-l~~g~lvanPiP~e~~---~~~~~i~~~I~~ 155 (217)
+.. -=.|++-+-..+.+.. .+.+.++..++.
T Consensus 77 ~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~ 111 (181)
T PF08659_consen 77 QRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAP 111 (181)
T ss_dssp TTSS-EEEEEE-------B-GCC--HHHHHHHHHH
T ss_pred hccCCcceeeeeeeeecccccccCCHHHHHHHHhh
Confidence 222 1247777776666544 445555555443
No 12
>PRK09072 short chain dehydrogenase; Provisional
Probab=54.52 E-value=27 Score=29.45 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=45.9
Q ss_pred cEEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccccc------cccccccccCCCHHHHHHHHHHHHhc
Q 027895 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPR------TLEYLVPCRVDSPEDCARLIDVNMKL 126 (217)
Q Consensus 53 ~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~------TlE~L~~~~~d~~~e~A~~~~~~~~l 126 (217)
.+.+|||-||+.+ .+...|.+-+- .|++++-..+..-++.. .+++ .+..+.+++++..++..-..+
T Consensus 7 ~vlItG~s~~iG~------~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 7 RVLLTGASGGIGQ------ALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRW-VVADLTSEAGREAVLARAREM 78 (263)
T ss_pred EEEEECCCchHHH------HHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEE-EEccCCCHHHHHHHHHHHHhc
Confidence 5899999999844 56666766653 47777766555444332 2333 334566788888877655545
Q ss_pred CCCCeEEEE
Q 027895 127 KLGSGLVIG 135 (217)
Q Consensus 127 ~l~~g~lva 135 (217)
+-..+++.+
T Consensus 79 ~~id~lv~~ 87 (263)
T PRK09072 79 GGINVLINN 87 (263)
T ss_pred CCCCEEEEC
Confidence 434444443
No 13
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=50.09 E-value=45 Score=27.45 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=30.5
Q ss_pred CCCcCCC--CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCc
Q 027895 137 PIPREHA--ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGL 185 (217)
Q Consensus 137 PiP~e~~--~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~ 185 (217)
|.|+.+. .+--..|++.+.|+ ++--.|+.+-||+|.++.++|.+.
T Consensus 80 ~~P~~f~R~~~t~vaeev~~~a~----~~~~~g~~~~~~~l~~~~~l~~~~ 126 (132)
T PF05944_consen 80 PMPDRFKRTLPTFVAEEVADWAL----RAAKAGQSFEPYFLSRVFELTADQ 126 (132)
T ss_pred CccccccCcchHHHHHHHHHHHH----HHHHcCCCCChHHHHHHHHHHccC
Confidence 6777766 33333344444444 334479999999999999999876
No 14
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=48.07 E-value=2e+02 Score=28.88 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHhc---CCCCccccccchHHHHhcCCC-ch-hhHHHHHHHHHHCCCcEEEecccccccCCccc-----cc
Q 027895 2 RLSTEELERLAKL---GSKAQKTARRDIAHVVATRGN-GA-TTVSATMFFASMVGIPVFVTGGIGGVHRHGEH-----TM 71 (217)
Q Consensus 2 Gl~~~ele~la~~---~~~~~K~SrRDl~~~~a~~~~-Ga-TTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~-----t~ 71 (217)
|||.+|+..|++. .......+...+-..++.|.. |- ||++. ..+...+|++|-=+||=|=-|.++.- -+
T Consensus 133 G~t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~~-apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~ 211 (500)
T TIGR03327 133 GMDMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIGGVPGNKISLLV-VPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA 211 (500)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCCCCCCCCEEHHH-HHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh
Confidence 8999999988862 112334443222223334444 22 35554 44446699999999988777776521 01
Q ss_pred ccccchhh----hcCCCeEEEeccccccc---cccccccccccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCC
Q 027895 72 DISSDLTE----LGRTPVAVVSAGIKSIL---DIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAA 144 (217)
Q Consensus 72 DiSaDL~e----L~rtpV~VVcaG~KsIL---Di~~TlE~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~ 144 (217)
++.-+..+ +.++..+++..|+..+- |.=--+|+ +..+|+...++.-+..++----...+|+=+|+=.---+
T Consensus 212 ~v~ls~e~~~~~v~~~G~~fl~Gqa~~l~PAdk~l~alrd--t~tvds~~li~aSImSKKlA~G~d~lvlDVk~G~gAfm 289 (500)
T TIGR03327 212 PVEFSADEIKRIVEKTGGCLVWGGATNLAPADDKIIKVER--PLSIDPRGQMLASVMAKKGAIGADHVVIDIPVGKGAKV 289 (500)
T ss_pred CCCCCHHHHHHHHHHCCEEEEECCccccCHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcC
Confidence 12222222 45788888776554321 11112222 44688876666655454444446788898888765555
Q ss_pred ChHHHHHHHHHHHH-HHHHcCCC------------CccCChHH--HHHHHHHhC
Q 027895 145 SGRVIESAIQSALR-EAREKNIT------------GNAETPFL--LARVNELTG 183 (217)
Q Consensus 145 ~~~~i~~~I~~Al~-eA~~~gi~------------Gk~~TPfl--L~~i~e~T~ 183 (217)
...+--+-+.+.+. -+++.|++ |..+=|.| .+.|.-+.+
T Consensus 290 ~~~~~A~~LA~~mv~vg~~~G~~~~a~iTdm~qPlG~~iGnaLEv~Eal~~L~g 343 (500)
T TIGR03327 290 KTVEEGRKLARDFIELGDRLGMNVECAITYGGQPIGRAIGPALEAKEALKVLED 343 (500)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEECCCCCccccccCcHHHHHHHHHHhcC
Confidence 54333333333332 34455553 66677765 233444443
No 15
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=48.01 E-value=4.5 Score=35.38 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=17.7
Q ss_pred EEecccccccccccccccc
Q 027895 87 VVSAGIKSILDIPRTLEYL 105 (217)
Q Consensus 87 VVcaG~KsILDi~~TlE~L 105 (217)
+||+|+||+=|+.++++-+
T Consensus 64 ~VcTGaKs~ed~~~av~~~ 82 (185)
T COG2101 64 VVCTGAKSVEDVHRAVKKL 82 (185)
T ss_pred EEEeccCcHHHHHHHHHHH
Confidence 6999999999999998887
No 16
>PRK05926 hypothetical protein; Provisional
Probab=45.35 E-value=32 Score=32.42 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCcEEEecccccccCCcccccccccchhhhcC
Q 027895 42 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR 82 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~r 82 (217)
-||..||.+||++-+| +|+|.-. +.-|.=.+|..|.+
T Consensus 211 ~~i~~a~~~Gi~~~sg-mi~G~gE---t~edrv~~l~~Lr~ 247 (370)
T PRK05926 211 EIHKTAHSLGIPSNAT-MLCYHRE---TPEDIVTHMSKLRA 247 (370)
T ss_pred HHHHHHHHcCCcccCc-eEEeCCC---CHHHHHHHHHHHHh
Confidence 7899999999999998 9999633 33344444444443
No 17
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=45.34 E-value=41 Score=30.90 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=24.4
Q ss_pred hHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccc
Q 027895 26 IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGV 63 (217)
Q Consensus 26 l~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGV 63 (217)
+|..+.....| +|+ .++..+..+|++.+.-.|.||-
T Consensus 179 vPVivK~~g~g-~s~-~~a~~l~~~Gvd~I~vsG~GGt 214 (326)
T cd02811 179 VPVIVKEVGFG-ISR-ETAKRLADAGVKAIDVAGAGGT 214 (326)
T ss_pred CCEEEEecCCC-CCH-HHHHHHHHcCCCEEEECCCCCC
Confidence 33334333346 444 5666777899999999999984
No 18
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=44.56 E-value=9.1 Score=25.45 Aligned_cols=46 Identities=30% Similarity=0.317 Sum_probs=26.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHH
Q 027895 109 RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 158 (217)
Q Consensus 109 ~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ 158 (217)
+++||+.+|+.+..-..=...-..++..+.|. +.+++++++++|+.
T Consensus 4 ~~~Dp~~AA~qf~~l~~g~~~~~~llg~~~~~----s~~e~~~~v~~aV~ 49 (55)
T PF14246_consen 4 RIDDPELAAEQFLGLLKGDLFWPALLGLAPPP----SAEEIERIVESAVD 49 (55)
T ss_dssp -SSSHHHHHHHHHHHHHHHHCHHHHHHTS--------HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHhCCCCCc----CHHHHHHHHHHHHH
Confidence 67899999988764332111112233334332 47888999998875
No 19
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=44.22 E-value=18 Score=31.55 Aligned_cols=83 Identities=36% Similarity=0.451 Sum_probs=52.1
Q ss_pred HHHHHHHHCCCcEEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccccccccccccccCCCHHHHHH---
Q 027895 42 ATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCAR--- 118 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TlE~L~~~~~d~~~e~A~--- 118 (217)
.|-..++..||+||.|=|.|=| . |+.-=|.+|+. |+.||+| ||| +|-|.-+|+..+.+.
T Consensus 54 ~t~~~~~~~gv~vi~tpG~GYv--~-----Dl~~al~~l~~-P~lvvsa------DLp----~l~~~~i~~vi~~~~~~~ 115 (177)
T COG2266 54 KTKEYLESVGVKVIETPGEGYV--E-----DLRFALESLGT-PILVVSA------DLP----FLNPSIIDSVIDAAASVE 115 (177)
T ss_pred hHHHHHHhcCceEEEcCCCChH--H-----HHHHHHHhcCC-ceEEEec------ccc----cCCHHHHHHHHHHHhhcc
Confidence 4667889999999999998855 2 77777777887 9999998 443 444444444333332
Q ss_pred --HHHHHHhcCC-CCeEEEEeCCCcCCC
Q 027895 119 --LIDVNMKLKL-GSGLVIGVPIPREHA 143 (217)
Q Consensus 119 --~~~~~~~l~l-~~g~lvanPiP~e~~ 143 (217)
+. .-...|. +-|+=+..+.+++.-
T Consensus 116 ~p~~-~~~~~G~v~~Glni~~~~~~~~~ 142 (177)
T COG2266 116 VPIV-TVVKAGRVPVGLNIVGGKQEEEI 142 (177)
T ss_pred Ccee-EeeccCccceeeEeecCCCccee
Confidence 11 0011233 556666666666544
No 20
>PRK06101 short chain dehydrogenase; Provisional
Probab=42.21 E-value=57 Score=27.21 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=42.2
Q ss_pred EEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccc---cccccccccccCCCHHHHHHHHHHHHhcCCCC
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDI---PRTLEYLVPCRVDSPEDCARLIDVNMKLKLGS 130 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi---~~TlE~L~~~~~d~~~e~A~~~~~~~~l~l~~ 130 (217)
+++|||-||+-+ .+..-|.+.+ ..|++++-..+..-.+ ...+.+ ....+.+.+++.+.+..-+. . +
T Consensus 4 vlItGas~giG~------~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~-~-~- 72 (240)
T PRK06101 4 VLITGATSGIGK------QLALDYAKQG-WQVIACGRNQSVLDELHTQSANIFT-LAFDVTDHPGTKAALSQLPF-I-P- 72 (240)
T ss_pred EEEEcCCcHHHH------HHHHHHHhCC-CEEEEEECCHHHHHHHHHhcCCCeE-EEeeCCCHHHHHHHHHhccc-C-C-
Confidence 788999998844 3444443333 2344443322211111 111222 24456678888887754211 1 2
Q ss_pred eEEEEeCC----CcCCCCChHHHHHHHH
Q 027895 131 GLVIGVPI----PREHAASGRVIESAIQ 154 (217)
Q Consensus 131 g~lvanPi----P~e~~~~~~~i~~~I~ 154 (217)
-.+|.|.- .....++.+.+++.++
T Consensus 73 d~~i~~ag~~~~~~~~~~~~~~~~~~~~ 100 (240)
T PRK06101 73 ELWIFNAGDCEYMDDGKVDATLMARVFN 100 (240)
T ss_pred CEEEEcCcccccCCCCCCCHHHHHHHHH
Confidence 23444441 1223466666655443
No 21
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=41.62 E-value=3.4e+02 Score=26.70 Aligned_cols=143 Identities=16% Similarity=0.063 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHhc---CCCCccccc----cchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCccc-----
Q 027895 2 RLSTEELERLAKL---GSKAQKTAR----RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEH----- 69 (217)
Q Consensus 2 Gl~~~ele~la~~---~~~~~K~Sr----RDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~----- 69 (217)
|+|.+|+..|++. .......+. ..+-..++.|..|--|--...+++..+|++|-=+||=|=-|.++.-
T Consensus 49 G~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEa 128 (437)
T TIGR02643 49 GMNRDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGDVVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEA 128 (437)
T ss_pred CCCHHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCcchhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHh
Confidence 8999999999872 112333441 2234445666666633336678889999999999986655666521
Q ss_pred --ccccccchhh----hcCCCeEEEecccccccccccccccc--ccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcC
Q 027895 70 --TMDISSDLTE----LGRTPVAVVSAGIKSILDIPRTLEYL--VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPRE 141 (217)
Q Consensus 70 --t~DiSaDL~e----L~rtpV~VVcaG~KsILDi~~TlE~L--~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e 141 (217)
.|++.-+..+ |.++.++++. +...+-=--+-+=-| ++..+|+.-.++.-+..+.--.-...+|+=+|.=.-
T Consensus 129 lpG~~v~ls~e~~~~~l~~~g~~f~g-qa~~l~PADk~ly~lRDvt~tVds~pLi~aSImSKKlA~g~d~ivlDVk~G~g 207 (437)
T TIGR02643 129 IPGYDIFPDPALFRRVVKDVGVAIIG-QTADLAPADKRFYATRDVTATVESIPLITASILSKKLAAGLDALVMDVKVGNG 207 (437)
T ss_pred CCCCCCCCCHHHHHHHHHHcCceEEc-cCCCcCcchhceeeeeeecCCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCC
Confidence 2233333222 4455555554 222222000111111 334566654444444333333335667777776554
Q ss_pred CCCC
Q 027895 142 HAAS 145 (217)
Q Consensus 142 ~~~~ 145 (217)
--+.
T Consensus 208 Afmk 211 (437)
T TIGR02643 208 AFMP 211 (437)
T ss_pred CcCC
Confidence 3333
No 22
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=41.29 E-value=18 Score=36.21 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=26.3
Q ss_pred CCcEEEecccccccCCcccccccccchhhhc
Q 027895 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELG 81 (217)
Q Consensus 51 GI~VFaTGGiGGVHrga~~t~DiSaDL~eL~ 81 (217)
.--|.||||+||++.-..+..-.+.|-..|+
T Consensus 186 ~~vVLATGG~g~ly~~TTNp~~~~GdGIamA 216 (518)
T COG0029 186 KAVVLATGGLGGLYAYTTNPKGSTGDGIAMA 216 (518)
T ss_pred CeEEEecCCCcccccccCCCccccccHHHHH
Confidence 4447899999999998888888888988877
No 23
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=41.18 E-value=54 Score=26.86 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (217)
+|.....++.|..-..+..|+++.-+...- .....-..+.+-..+|+..||+|.|+|
T Consensus 154 fg~~~~~~~~l~~l~~d~iKld~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 154 FGTGYSSLSYLKRLPVDLLKIDKSFVRDLQ-TDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CCCcHHHHHHHHhCCCCeEEECHHHHhhhc-cChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 355666777776654577888876554332 233345667788889999999999995
No 24
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=38.19 E-value=45 Score=31.38 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=20.6
Q ss_pred CCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 027895 128 LGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 165 (217)
Q Consensus 128 l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi 165 (217)
+|.-++|.+|.-+ .+|+.||...||
T Consensus 152 ~Pd~viv~d~~~e-------------~~AI~EA~kl~I 176 (326)
T PRK12311 152 LPDLLFVIDTNKE-------------DIAIQEAQRLGI 176 (326)
T ss_pred CCCEEEEeCCccc-------------hHHHHHHHHcCC
Confidence 7889999998643 358999999998
No 25
>PRK07677 short chain dehydrogenase; Provisional
Probab=37.67 E-value=63 Score=27.04 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=43.4
Q ss_pred cEEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccccc-------cccccccccCCCHHHHHHHHHHH-H
Q 027895 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPR-------TLEYLVPCRVDSPEDCARLIDVN-M 124 (217)
Q Consensus 53 ~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~-------TlE~L~~~~~d~~~e~A~~~~~~-~ 124 (217)
.+++|||-||+.+ .+..-|.+-+- .|++++......-++.. .+.+ .+.-+.+++++.+++..- .
T Consensus 3 ~~lItG~s~giG~------~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 3 VVIITGGSSGMGK------AMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLT-VQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred EEEEeCCCChHHH------HHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEE-EEecCCCHHHHHHHHHHHHH
Confidence 4789999998855 33333433332 45555544322111111 1222 333456787777766532 2
Q ss_pred hcCCCCeEEEEeC-CC---cCCCCChHHHHHHHH
Q 027895 125 KLKLGSGLVIGVP-IP---REHAASGRVIESAIQ 154 (217)
Q Consensus 125 ~l~l~~g~lvanP-iP---~e~~~~~~~i~~~I~ 154 (217)
.++-.. +||-|. ++ .-..++.+.+++.++
T Consensus 75 ~~~~id-~lI~~ag~~~~~~~~~~~~~~~~~~~~ 107 (252)
T PRK07677 75 KFGRID-ALINNAAGNFICPAEDLSVNGWNSVID 107 (252)
T ss_pred HhCCcc-EEEECCCCCCCCCcccCCHHHHHHHHh
Confidence 233223 344432 11 112356666655553
No 26
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=36.15 E-value=37 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCCcc
Q 027895 144 ASGRVIESAIQSALREAREKNITGNA 169 (217)
Q Consensus 144 ~~~~~i~~~I~~Al~eA~~~gi~Gk~ 169 (217)
-|.-.+..+-++.+++|+++||.+.+
T Consensus 23 ~d~is~~~La~kl~adA~a~Gi~~~e 48 (64)
T PF05589_consen 23 ADIISAAELAEKLFADAEAAGIPREE 48 (64)
T ss_pred cchhhHHHHHHHHHHHHHHcCCCHHH
Confidence 33445667888999999999997654
No 27
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=35.56 E-value=83 Score=26.06 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=43.3
Q ss_pred EEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccccccccc----c--ccccCCCHHHHHHHHHHH-Hhc
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEY----L--VPCRVDSPEDCARLIDVN-MKL 126 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TlE~----L--~~~~~d~~~e~A~~~~~~-~~l 126 (217)
+++|||-||+.+ .+..-|.+.+- .|++++-....--++-..++. . .+..+.+++++.+++..- ..+
T Consensus 3 ~lItG~sg~iG~------~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 75 (254)
T TIGR02415 3 ALVTGGAQGIGK------GIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKF 75 (254)
T ss_pred EEEeCCCchHHH------HHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 788888888744 45555555442 355554332211111111110 0 233456788887776543 234
Q ss_pred CCCCeEEEEeC-CCcC---CCCChHHHHHHH
Q 027895 127 KLGSGLVIGVP-IPRE---HAASGRVIESAI 153 (217)
Q Consensus 127 ~l~~g~lvanP-iP~e---~~~~~~~i~~~I 153 (217)
+ +-.+||-|. +... ...+.+.+++..
T Consensus 76 ~-~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 105 (254)
T TIGR02415 76 G-GFDVMVNNAGVAPITPILEITEEELKKVY 105 (254)
T ss_pred C-CCCEEEECCCcCCCCCcccCCHHHHHHHH
Confidence 4 333444443 2211 135566655544
No 28
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=35.33 E-value=1.3e+02 Score=28.47 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=41.9
Q ss_pred chhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhhcCCCeEEEecccccccccccccccc
Q 027895 36 GATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL 105 (217)
Q Consensus 36 GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TlE~L 105 (217)
+.+|=+++..++|-.+|||.-|+.--+|--+-..+||=+.- =++|.-+.+|+.+++|..
T Consensus 94 ~i~tp~Aq~~~s~~~~iPVV~aavtd~v~a~Lv~~~~~pg~-----------NvTGvsD~~~v~q~i~li 152 (322)
T COG2984 94 AIATPAAQALVSATKTIPVVFAAVTDPVGAKLVKSLEQPGG-----------NVTGVSDLLPVAQQIELI 152 (322)
T ss_pred ecCCHHHHHHHHhcCCCCEEEEccCchhhccCCccccCCCC-----------ceeecCCcchHHHHHHHH
Confidence 55666788999999999999999866653333333333211 168999999999999944
No 29
>PRK04266 fibrillarin; Provisional
Probab=34.68 E-value=1.4e+02 Score=26.13 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=33.8
Q ss_pred cccccccc----hhhhcC--CCeEEEecccccc---ccccccccccccccCCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 027895 69 HTMDISSD----LTELGR--TPVAVVSAGIKSI---LDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGV 136 (217)
Q Consensus 69 ~t~DiSaD----L~eL~r--tpV~VVcaG~KsI---LDi~~TlE~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvan 136 (217)
..+|+|.. +.+.++ ++|..+..-+... .+++..+..+. +.+.++++...++..-.++=-++|.++.+
T Consensus 100 ~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~-~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 100 YAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY-QDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE-ECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 35699984 444443 5677776544321 23344444443 22445655434443333333477777763
No 30
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=34.67 E-value=72 Score=33.48 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCcEEEecccccccCCcccccccccchhhhcCCCeEEEeccc-ccccccccccccc------------ccccCCCHHHHH
Q 027895 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGI-KSILDIPRTLEYL------------VPCRVDSPEDCA 117 (217)
Q Consensus 51 GI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~-KsILDi~~TlE~L------------~~~~~d~~~e~A 117 (217)
+-.+..-=|-|||+---..... -.||..--+-||++|+.+- =.|=.-=.|+|+| .....++.+.+.
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~-~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~ 262 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTL-QCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALL 262 (817)
T ss_pred cCCeEEEECCCcccccCCCCCC-HHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHH
Confidence 3467778889999986544333 2588887899988887532 2333444788888 334456777776
Q ss_pred HHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHH
Q 027895 118 RLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQ 154 (217)
Q Consensus 118 ~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~ 154 (217)
+++.. +-.++..-|+|+. +.+.+++|.+
T Consensus 263 ~~~~~------~~pv~~lp~~p~~---~~~~~~~~~~ 290 (817)
T PLN02974 263 SYLSN------RVPVFVLPPVPED---PGDDLDEWFD 290 (817)
T ss_pred HHHhc------CCcEEeCCCCCCC---cchhHHHHHH
Confidence 66543 2344444444443 3445888876
No 31
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=34.46 E-value=21 Score=31.41 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=31.1
Q ss_pred EEEecccccccCCcccccccccchhhhc------CCCeEEEecccccccccc-cccccc
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTELG------RTPVAVVSAGIKSILDIP-RTLEYL 105 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL~------rtpV~VVcaG~KsILDi~-~TlE~L 105 (217)
||..||.|+.. .|--+.+|.+|- .-||+-||.||-.++... ..=+||
T Consensus 100 v~iPGG~g~~~-----dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~l 153 (232)
T cd03148 100 VFIPGGHGALI-----GIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNP 153 (232)
T ss_pred EEECCCCCChh-----hcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCee
Confidence 69999988642 123355566653 569999999998777743 122566
No 32
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=34.39 E-value=68 Score=29.55 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=47.2
Q ss_pred CHHHHHHHHhcCCCC---ccccccchHHHHhc----------CCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccc
Q 027895 4 STEELERLAKLGSKA---QKTARRDIAHVVAT----------RGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHT 70 (217)
Q Consensus 4 ~~~ele~la~~~~~~---~K~SrRDl~~~~a~----------~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t 70 (217)
|.+|..+.++.+.+. .|.|-.|+..++.. -.+||-|.. +..-=...|+++++||-+ |.. ..
T Consensus 198 tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~-ni~~yA~tGvD~Is~gal---~~a--~~ 271 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLAGGINLN-TLKNYADCGIRLFITSAP---YYA--AP 271 (284)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHH-HHHHHHhcCCCEEEECcc---ccC--CC
Confidence 456666666554332 36777777666653 247888884 455555679999999987 443 78
Q ss_pred cccccchhhh
Q 027895 71 MDISSDLTEL 80 (217)
Q Consensus 71 ~DiSaDL~eL 80 (217)
+|+|-|+.-+
T Consensus 272 ~Disl~i~~~ 281 (284)
T PRK06096 272 ADIKVSLQPA 281 (284)
T ss_pred cCeEEEEEec
Confidence 8999887443
No 33
>PRK12744 short chain dehydrogenase; Provisional
Probab=34.34 E-value=97 Score=25.99 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=35.0
Q ss_pred CCCcEEEecccccccCCcccccccccchhhhcCCCeEEEec-cccc------ccc----ccccccccccccCCCHHHHHH
Q 027895 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA-GIKS------ILD----IPRTLEYLVPCRVDSPEDCAR 118 (217)
Q Consensus 50 aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVca-G~Ks------ILD----i~~TlE~L~~~~~d~~~e~A~ 118 (217)
.|=.|++|||-||+-+ .+...|.+-+- .|++++. ..++ ..+ .+..+++ .+..+.+++++.+
T Consensus 7 ~~k~vlItGa~~gIG~------~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~D~~~~~~~~~ 78 (257)
T PRK12744 7 KGKVVLIAGGAKNLGG------LIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVA-FQADLTTAAAVEK 78 (257)
T ss_pred CCcEEEEECCCchHHH------HHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEE-EecCcCCHHHHHH
Confidence 3557999999999844 45666655443 3444432 1111 110 0112332 3455677888877
Q ss_pred HHHH
Q 027895 119 LIDV 122 (217)
Q Consensus 119 ~~~~ 122 (217)
++..
T Consensus 79 ~~~~ 82 (257)
T PRK12744 79 LFDD 82 (257)
T ss_pred HHHH
Confidence 7654
No 34
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=34.17 E-value=74 Score=27.00 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=10.5
Q ss_pred cccccchhhhcCCCeEEEecccc
Q 027895 71 MDISSDLTELGRTPVAVVSAGIK 93 (217)
Q Consensus 71 ~DiSaDL~eL~rtpV~VVcaG~K 93 (217)
++....+.+..+.||++. .|.+
T Consensus 166 ~~~l~~i~~~~~ipvia~-GGI~ 187 (219)
T cd04729 166 FELLKELRKALGIPVIAE-GRIN 187 (219)
T ss_pred HHHHHHHHHhcCCCEEEe-CCCC
Confidence 444444444445565543 3555
No 35
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=33.28 E-value=3.7e+02 Score=25.32 Aligned_cols=141 Identities=22% Similarity=0.263 Sum_probs=86.0
Q ss_pred CCHHHHHHHHhcCCCCccccccc---hHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhh
Q 027895 3 LSTEELERLAKLGSKAQKTARRD---IAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTE 79 (217)
Q Consensus 3 l~~~ele~la~~~~~~~K~SrRD---l~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~e 79 (217)
|+++|+|.|-++.+...-..-|| |...-|.| |.+++++|+++ -||..+
T Consensus 115 Ls~~eve~Ll~~~~~~~p~~LRdrAmlELLYATG----------lRVSElv~L~l----------------~dv~~~--- 165 (300)
T COG4974 115 LSEEEVEALLEAPDEDTPLGLRDRAMLELLYATG----------LRVSELVGLTL----------------SDVDLR--- 165 (300)
T ss_pred cCHHHHHHHHhCCCCCCcHhHHHHHHHHHHHHcC----------ChHHHHhcCcH----------------hhhccc---
Confidence 78999999987533333567788 33333332 67777777752 133322
Q ss_pred hcCCCeEEEeccccccccccccccccccccCCCHHHHHHHHH-HHHhc-C-CC-CeEEEEeCCCcCCCCChHHHHHHHHH
Q 027895 80 LGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLID-VNMKL-K-LG-SGLVIGVPIPREHAASGRVIESAIQS 155 (217)
Q Consensus 80 L~rtpV~VVcaG~KsILDi~~TlE~L~~~~~d~~~e~A~~~~-~~~~l-~-l~-~g~lvanPiP~e~~~~~~~i~~~I~~ 155 (217)
+--|.|.-=|-| |.++|.+-.-.+-+-+++. .+..| . -+ ..+||.|-=-. .+.+.-+-..|++
T Consensus 166 --~~~v~V~GKG~K---------eR~VP~g~~A~~~l~~Yl~~~R~~l~~~~~~~~~LF~n~~g~--~ltrq~~w~~lk~ 232 (300)
T COG4974 166 --QGVVRVRGKGNK---------ERLVPFGEEAVEALEKYLEEARPKLLKGKSSTDALFPNQRGG--GLTRQGFWKRLKD 232 (300)
T ss_pred --cCeEEEEccCCc---------eeeeechHHHHHHHHHHHHHhhHHHhccCCCCCeeeecCCCC--CCCHHHHHHHHHH
Confidence 222333334444 6778876655555556665 33333 1 22 36888776444 4899999999987
Q ss_pred HHHHHHHcCCCCccCChHHHHHH---HHHhCCccHHH
Q 027895 156 ALREAREKNITGNAETPFLLARV---NELTGGLSLAS 189 (217)
Q Consensus 156 Al~eA~~~gi~Gk~~TPflL~~i---~e~T~G~Sl~a 189 (217)
.. .++||. +.++|..|+.= +=+-+|..+++
T Consensus 233 ~a---~~Agi~-~~isPH~LRHsFATHLL~~GADlRv 265 (300)
T COG4974 233 YA---ERAGID-KKISPHTLRHSFATHLLENGADLRV 265 (300)
T ss_pred HH---HHhCCC-CCcCchhhHHHHHHHHHhCCccHHH
Confidence 64 466999 99999999852 33445555554
No 36
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=33.18 E-value=41 Score=29.58 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=11.6
Q ss_pred ccccccccccccc
Q 027895 93 KSILDIPRTLEYL 105 (217)
Q Consensus 93 KsILDi~~TlE~L 105 (217)
..|+|+.+|+++|
T Consensus 43 i~IIdL~kT~~~L 55 (204)
T PRK04020 43 LYVLDVRKTDERI 55 (204)
T ss_pred CEEEcHHHHHHHH
Confidence 4799999999999
No 37
>PF04993 TfoX_N: TfoX N-terminal domain; InterPro: IPR007076 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found in association with the C-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain.; PDB: 2OD0_A.
Probab=32.73 E-value=27 Score=26.17 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHHHH
Q 027895 137 PIPREHAASGRVIESAIQSALREARE 162 (217)
Q Consensus 137 PiP~e~~~~~~~i~~~I~~Al~eA~~ 162 (217)
-||++.--|++.+.+|++.|+++|.+
T Consensus 72 ~vp~~~~~d~~~l~~w~~~al~~a~r 97 (97)
T PF04993_consen 72 LVPEEILEDDEELRQWIRLALAAAKR 97 (97)
T ss_dssp E--HHHHC-HHHHHHHHHHHHHHHH-
T ss_pred EeCHHHccCHHHHHHHHHHHHHHhcC
Confidence 46777777999999999999999864
No 38
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.18 E-value=89 Score=27.26 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=41.7
Q ss_pred CCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHC-CCcEEEecccccccCCcccccccccchhhhc
Q 027895 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMV-GIPVFVTGGIGGVHRHGEHTMDISSDLTELG 81 (217)
Q Consensus 3 l~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~a-GI~VFaTGGiGGVHrga~~t~DiSaDL~eL~ 81 (217)
+|++|+.+-.+.+-+..|+- | ....|-..+ =.+.... ++|+++||||. -.++.++-
T Consensus 117 ~T~~E~~~A~~~Gad~vklF----P----a~~~G~~~i---k~l~~~~p~ip~~atGGI~------------~~N~~~~l 173 (213)
T PRK06552 117 MTVTEIVTALEAGSEIVKLF----P----GSTLGPSFI---KAIKGPLPQVNVMVTGGVN------------LDNVKDWF 173 (213)
T ss_pred CCHHHHHHHHHcCCCEEEEC----C----cccCCHHHH---HHHhhhCCCCEEEEECCCC------------HHHHHHHH
Confidence 46777776655555677772 1 112222222 2233334 49999999886 25778888
Q ss_pred CCCeEEEecccc
Q 027895 82 RTPVAVVSAGIK 93 (217)
Q Consensus 82 rtpV~VVcaG~K 93 (217)
+.++..||.|.-
T Consensus 174 ~aGa~~vavgs~ 185 (213)
T PRK06552 174 AAGADAVGIGGE 185 (213)
T ss_pred HCCCcEEEEchH
Confidence 888877777643
No 39
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=32.07 E-value=90 Score=26.46 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHCCCcEEEec
Q 027895 45 FFASMVGIPVFVTG 58 (217)
Q Consensus 45 ~lA~~aGI~VFaTG 58 (217)
..+..+|...+.++
T Consensus 133 ~~a~~~G~d~i~~~ 146 (221)
T PRK01130 133 LAAQKLGFDFIGTT 146 (221)
T ss_pred HHHHHcCCCEEEcC
Confidence 45666777766553
No 40
>CHL00067 rps2 ribosomal protein S2
Probab=31.08 E-value=83 Score=27.82 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=20.1
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 027895 127 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 165 (217)
Q Consensus 127 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi 165 (217)
.+|.-++|.+|..+. +|+.||...||
T Consensus 160 ~~P~~iiv~d~~~~~-------------~ai~Ea~~l~I 185 (230)
T CHL00067 160 KLPDIVIIIDQQEEY-------------TALRECRKLGI 185 (230)
T ss_pred cCCCEEEEeCCcccH-------------HHHHHHHHcCC
Confidence 468888888886542 58889998887
No 41
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=30.87 E-value=38 Score=29.62 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=11.8
Q ss_pred ccccccccccccc
Q 027895 93 KSILDIPRTLEYL 105 (217)
Q Consensus 93 KsILDi~~TlE~L 105 (217)
-.|+|+.+|+++|
T Consensus 37 i~IIdL~kT~~~L 49 (196)
T TIGR01012 37 LYVLDLRKTDERL 49 (196)
T ss_pred CEEEcHHHHHHHH
Confidence 4799999999999
No 42
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=30.20 E-value=4.5e+02 Score=24.42 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHC----CCcEEEecccccccCCcccccccccchhhhcCCCeEEEec------------------c-----
Q 027895 39 TVSATMFFASMV----GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA------------------G----- 91 (217)
Q Consensus 39 TVaaTm~lA~~a----GI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVca------------------G----- 91 (217)
.+|.-+..|..+ .+.|+|.+|=|+...++ | -+-+.....+.||++||- |
T Consensus 76 ~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g---~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 76 AVASGIEEALKARGEKGVIVVGWAGDGGTADIG---F-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEccCcccccc---H-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344445555443 58899999999876653 3 355566677999999972 1
Q ss_pred --------cccccccccccc--ccccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHH
Q 027895 92 --------IKSILDIPRTLE--YLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 158 (217)
Q Consensus 92 --------~KsILDi~~TlE--~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ 158 (217)
.|+|..|-++.. |......-++.++-+.++.-.+..-++=+.+-.|=|..+..+.+.-.+.-+.|++
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~ 228 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVE 228 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHH
Confidence 233333333222 3344444578888888877666666777777889999888888775554444444
No 43
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=30.15 E-value=1.1e+02 Score=23.54 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=33.2
Q ss_pred CCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCC
Q 027895 128 LGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGG 184 (217)
Q Consensus 128 l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G 184 (217)
+.+.+.+.+| .+.++-.+-+.-.++|.+.||+=++-||-|+.+|.+..+.
T Consensus 11 l~Apv~i~i~-------~GtDl~diP~~if~~aDe~gIKV~y~t~~li~~i~~~a~~ 60 (84)
T PF14601_consen 11 LNAPVRITIP-------AGTDLFDIPEIIFKEADEAGIKVRYDTPELINFIREAAPD 60 (84)
T ss_dssp H---EEEEE---------GGGHHHHHHHHHHHHHHHS-S----HHHHHHHHHHH-SS
T ss_pred cCCCEEEEEc-------CCCcHHHhHHHHHHHHhHcCCeeccCHHHHHHHHHHhchh
Confidence 4566777766 3667778888899999999999999999999999987663
No 44
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=29.45 E-value=93 Score=22.73 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=32.4
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHH
Q 027895 137 PIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNEL 181 (217)
Q Consensus 137 PiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~ 181 (217)
=+|++++ ..-.-..+++.|++.|+++|.+=..+-||+-+.+.+-
T Consensus 29 ~V~~~~r-GqGia~~L~~~~l~~a~~~~~kv~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 29 EVPPELR-GQGIAKKLVEAALDYARENGLKVVPTCSYVAKYFRRH 72 (78)
T ss_dssp EE-CSSS-TTTHHHHHHHHHHHHHHHTT-EEEETSHHHHHHHHH-
T ss_pred EECcccc-CCcHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHhC
Confidence 4555554 3345567888899999999999999999999888763
No 45
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=28.71 E-value=2.5e+02 Score=27.43 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=90.3
Q ss_pred HHHHHHHHCCCcEEEeccccc---ccCCcccccccccchh------------hhcCCCeEEEeccccccccccccccccc
Q 027895 42 ATMFFASMVGIPVFVTGGIGG---VHRHGEHTMDISSDLT------------ELGRTPVAVVSAGIKSILDIPRTLEYLV 106 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGG---VHrga~~t~DiSaDL~------------eL~rtpV~VVcaG~KsILDi~~TlE~L~ 106 (217)
-....|..-|+.||+-==+.| +..--++..++...+. .++.-.|.+|.+|+-++-|+..-|.++.
T Consensus 187 ~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~ 266 (391)
T COG1453 187 EGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIAS 266 (391)
T ss_pred HHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHh
Confidence 457788889999998644433 1112234455555554 4778889999999999999998888883
Q ss_pred cc--cCCC-----HHHHHHHHHHHHhcCCC-CeEEEEeCCCcCCCCChHHHHHHHHHHHHH----------HHHcC----
Q 027895 107 PC--RVDS-----PEDCARLIDVNMKLKLG-SGLVIGVPIPREHAASGRVIESAIQSALRE----------AREKN---- 164 (217)
Q Consensus 107 ~~--~~d~-----~~e~A~~~~~~~~l~l~-~g~lvanPiP~e~~~~~~~i~~~I~~Al~e----------A~~~g---- 164 (217)
.. ++.. .+++-++++. .++.+ .+.=.+.|=|+...|| .+-.+.+.+... ....+
T Consensus 267 ~~~p~lte~e~~il~~v~~~~~~--~~~v~Ct~C~yC~PCP~gInIP--~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~ 342 (391)
T COG1453 267 ELEPSLTEEELQILEKVEEIYRE--SLKVPCTGCRYCLPCPSGINIP--EIFRLYNLAVAFDDVDYAKFRYNMLENGGHW 342 (391)
T ss_pred hcCCccCHHHHHHHHHHHHHHHH--HhcCCCccccccCcCCCCCChH--HHHHHHHHHHhhccchhhHHHHHHHhccCcc
Confidence 32 3433 2333344433 23333 4666788988877766 344444444322 11122
Q ss_pred ---CCCccCC-----------------hHHHHHHHHHhCCccHH
Q 027895 165 ---ITGNAET-----------------PFLLARVNELTGGLSLA 188 (217)
Q Consensus 165 ---i~Gk~~T-----------------PflL~~i~e~T~G~Sl~ 188 (217)
-.|++.+ |=+|+.+++.-.|+.++
T Consensus 343 ~~~~~g~as~CieCgqCl~~CPq~l~Ip~~Lk~v~~~leg~~~~ 386 (391)
T COG1453 343 FPGPKGKASDCIECGQCLEKCPQHLDIPELLKEVHEELEGEDLE 386 (391)
T ss_pred CCCCcccccccchhhhhhhcCCCcCcHHHHHHHHHHHhcchHHH
Confidence 2566766 78999999999998876
No 46
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=28.70 E-value=42 Score=30.53 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=10.8
Q ss_pred cccccccccccc
Q 027895 94 SILDIPRTLEYL 105 (217)
Q Consensus 94 sILDi~~TlE~L 105 (217)
.|+||.+|+|.|
T Consensus 47 ~IIdL~kT~~~L 58 (249)
T PTZ00254 47 HIINLAKTWEKL 58 (249)
T ss_pred EEEcHHHHHHHH
Confidence 689999999999
No 47
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=28.40 E-value=6.4e+02 Score=25.55 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCHHHHHHHHhcCCC-CccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhhc
Q 027895 3 LSTEELERLAKLGSK-AQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG 81 (217)
Q Consensus 3 l~~~ele~la~~~~~-~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~ 81 (217)
|+++++..+...+.- ...-||-.+ + ----.......++..+|..|+.= |+..||+-.+-|.|..
T Consensus 125 Lt~~~v~~~~~~GGsd~LGs~R~k~-----~---~~e~~~~i~~~l~~~~Id~LviI-------GGddS~~~A~~Lae~~ 189 (550)
T cd00765 125 LNAEYIQPYRNTGGFDMICSGRTKI-----E---TEDQFKQAEETAKKLDLDALVVI-------GGDDSNTNAALLAENF 189 (550)
T ss_pred CCHHHHhHHHhCCChhhhcCcCCCC-----C---CHHHHHHHHHHHHHcCCCEEEEe-------CCchHHHHHHHHHHHH
Confidence 566667666654322 455555443 0 01123455677889999988864 3445778777788752
Q ss_pred ---CCCeEEEeccccccc-ccccc
Q 027895 82 ---RTPVAVVSAGIKSIL-DIPRT 101 (217)
Q Consensus 82 ---rtpV~VVcaG~KsIL-Di~~T 101 (217)
..++.||. =||.|= ||+.|
T Consensus 190 ~~~g~~i~VIG-VPKTIDNDl~~t 212 (550)
T cd00765 190 RSKGLKTRVIG-VPKTIDGDLKNK 212 (550)
T ss_pred HhcCCCceEEE-EeeeecCCCCCC
Confidence 33455553 277774 66665
No 48
>PRK05354 arginine decarboxylase; Provisional
Probab=28.31 E-value=2.4e+02 Score=28.86 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=69.6
Q ss_pred eEEEecccccccccccccccc-----ccccCCCHHHHHHHHHHHHhcCCCCeEEE-EeCC-------------CcCCCCC
Q 027895 85 VAVVSAGIKSILDIPRTLEYL-----VPCRVDSPEDCARLIDVNMKLKLGSGLVI-GVPI-------------PREHAAS 145 (217)
Q Consensus 85 V~VVcaG~KsILDi~~TlE~L-----~~~~~d~~~e~A~~~~~~~~l~l~~g~lv-anPi-------------P~e~~~~ 145 (217)
..++|.|.|+-=+|..-|... +-..+|+++|+..+.....+++..--+.| .||- +..+-++
T Consensus 147 ~lIi~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~ 226 (634)
T PRK05354 147 ALIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLS 226 (634)
T ss_pred cEEEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCcccCCCCCCCCCCC
Confidence 469999999765555444221 23468999999999987777765544443 3442 3466788
Q ss_pred hHHHHHHHHHHHHHHHHcC----CCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027895 146 GRVIESAIQSALREAREKN----ITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 210 (217)
Q Consensus 146 ~~~i~~~I~~Al~eA~~~g----i~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~ 210 (217)
.+++.++++.+ ++.+ +.|=.+|. + |=-.|++.+++..+-+.++..++.+
T Consensus 227 ~~ei~~~i~~l----k~~~~l~~L~GLHfHi----------G--SQi~d~~~~~~al~e~~~~~~eL~~ 279 (634)
T PRK05354 227 ATEVLEAVERL----REAGLLDCLQLLHFHL----------G--SQIANIRDIKTAVREAARFYVELRK 279 (634)
T ss_pred HHHHHHHHHHH----HhCCCCCceEEEEEeC----------C--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88877755543 3333 22222221 0 1113778888888888888888765
No 49
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.92 E-value=1.1e+02 Score=25.34 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=39.1
Q ss_pred CCCcEEEecccccccCCcccccccccchhhhcCCCeEEEec--cccc------cccccccccccccccCCCHHHHHHHHH
Q 027895 50 VGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSA--GIKS------ILDIPRTLEYLVPCRVDSPEDCARLID 121 (217)
Q Consensus 50 aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVca--G~Ks------ILDi~~TlE~L~~~~~d~~~e~A~~~~ 121 (217)
.|=.+++|||-||+-+ .+...|.+.+- .|++++. ..+. +-..+..++++ +.-+.+++++.+++.
T Consensus 3 ~~~~vlItGa~g~iG~------~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 3 SGKVALVTGSSRGIGK------AIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAV-KANVGDVEKIKEMFA 74 (250)
T ss_pred CCCEEEEeCCCchHHH------HHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHH
Confidence 4557999999999844 35555555432 2333221 1110 00112223332 345668888888776
Q ss_pred HHHh-cCCCCeEEEEeC
Q 027895 122 VNMK-LKLGSGLVIGVP 137 (217)
Q Consensus 122 ~~~~-l~l~~g~lvanP 137 (217)
.-.. ++ +--+||.|.
T Consensus 75 ~~~~~~~-~id~vi~~a 90 (250)
T PRK08063 75 QIDEEFG-RLDVFVNNA 90 (250)
T ss_pred HHHHHcC-CCCEEEECC
Confidence 4333 33 223455543
No 50
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=27.90 E-value=82 Score=29.60 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCcEEEecccccccC-Ccccccccccchhh-hc-CCCeEEEeccccc
Q 027895 42 ATMFFASMVGIPVFVTGGIGGVHR-HGEHTMDISSDLTE-LG-RTPVAVVSAGIKS 94 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGGVHr-ga~~t~DiSaDL~e-L~-rtpV~VVcaG~Ks 94 (217)
-+...|..+|++-+..+|-||-.. ++..|+|.=.++.+ ++ +.|| .++.|..+
T Consensus 237 ~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i-~~dgGir~ 291 (356)
T PF01070_consen 237 EDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPI-IADGGIRR 291 (356)
T ss_dssp HHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEE-EEESS--S
T ss_pred HHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeE-EEeCCCCC
Confidence 344556666666666666666422 22334444344443 33 4444 55566653
No 51
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=27.78 E-value=2.5e+02 Score=25.83 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=9.7
Q ss_pred HHHHCCCcEEEec
Q 027895 46 FASMVGIPVFVTG 58 (217)
Q Consensus 46 lA~~aGI~VFaTG 58 (217)
+.....+||++-+
T Consensus 173 l~~~~~vPVivK~ 185 (326)
T cd02811 173 LVKALSVPVIVKE 185 (326)
T ss_pred HHHhcCCCEEEEe
Confidence 5555699999874
No 52
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=27.71 E-value=1.4e+02 Score=26.40 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=10.2
Q ss_pred cEEEecccccccC
Q 027895 53 PVFVTGGIGGVHR 65 (217)
Q Consensus 53 ~VFaTGGiGGVHr 65 (217)
.+++|||-+|+-+
T Consensus 5 ~vlITGas~GIG~ 17 (314)
T TIGR01289 5 TVIITGASSGLGL 17 (314)
T ss_pred EEEEECCCChHHH
Confidence 4789999998844
No 53
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=27.43 E-value=99 Score=30.41 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 027895 2 RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (217)
Q Consensus 2 Gl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (217)
|-+..-++.|..-..+..|+++.=+. -+......-..+.+...+|+..||+|.|+|
T Consensus 700 g~~~~~~~~l~~l~~d~iKid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~via~g 755 (799)
T PRK11359 700 GTGFSGLSRLVSLPVTEIKIDKSFVD-RCLTEKRILALLEAITSIGQSLNLTVVAEG 755 (799)
T ss_pred CCchhhHHHHhhCCCCEEEECHHHHh-hcccChhHHHHHHHHHHHHHHCCCeEEEEc
Confidence 55667777787765678899965332 233344445578888999999999999995
No 54
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=26.99 E-value=38 Score=29.74 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=27.5
Q ss_pred EEEecccccccCCcccccccccchhhhc------CCCeEEEeccccccccc
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTELG------RTPVAVVSAGIKSILDI 98 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL~------rtpV~VVcaG~KsILDi 98 (217)
||..||.|+... +--+.+|.+|- .-||+.||.||..++..
T Consensus 98 v~iPGG~g~~~d-----l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 98 FFVAGGHGTLFD-----FPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred EEECCCCchhhh-----cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 699999886432 22255566543 56999999999765554
No 55
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=26.86 E-value=58 Score=30.39 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHCCCcEEEecc-cccccCCcccccccccchhh
Q 027895 42 ATMFFASMVGIPVFVTGG-IGGVHRHGEHTMDISSDLTE 79 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGG-iGGVHrga~~t~DiSaDL~e 79 (217)
.-+.-+|.+|.+|++.|| -|| +...++|--.|+..
T Consensus 255 ~f~~~~~~~g~~V~~~~~~~~~---~~~~~~d~~~~~~~ 290 (309)
T cd08613 255 RFLARMEAAGTRVILVGPYTGG---EFSEGFDTPEDLKR 290 (309)
T ss_pred HHHHHHHHcCCeEEEEecccCC---cccCCCCCHHHHHH
Confidence 345678999999999988 343 33334444444433
No 56
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.59 E-value=1.6e+02 Score=24.40 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=44.3
Q ss_pred CCcEEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccc-------cccccccccccCCCHHHHHHHHHH-
Q 027895 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDI-------PRTLEYLVPCRVDSPEDCARLIDV- 122 (217)
Q Consensus 51 GI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi-------~~TlE~L~~~~~d~~~e~A~~~~~- 122 (217)
+=.+|+|||-||+-+. +..=|.+-+- .|++++-.++..=++ +..+++ ....+.+++++.+.+..
T Consensus 5 ~k~vlItGa~~~IG~~------la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRT------LAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALA-VPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHH------HHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEE-EecCCCCHHHHHHHHHHH
Confidence 4469999999998652 3333333221 344444333211111 112222 33456677887777654
Q ss_pred HHhcCCCCeEEEEeCCC--c--CC-CCChHHHHHHH
Q 027895 123 NMKLKLGSGLVIGVPIP--R--EH-AASGRVIESAI 153 (217)
Q Consensus 123 ~~~l~l~~g~lvanPiP--~--e~-~~~~~~i~~~I 153 (217)
..+++-. -+||.|.-+ . .. ..+.+..++.+
T Consensus 77 ~~~~g~~-d~vi~~ag~~~~~~~~~~~~~~~~~~~~ 111 (258)
T PRK07890 77 LERFGRV-DALVNNAFRVPSMKPLADADFAHWRAVI 111 (258)
T ss_pred HHHcCCc-cEEEECCccCCCCCCcccCCHHHHHHHH
Confidence 3334422 345555422 1 11 24556555544
No 57
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=26.58 E-value=92 Score=28.85 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhcC-CCCccccccc-hHHHHhcCCCchhhHH---HHHHHHHHCCCcEEEecccc
Q 027895 2 RLSTEELERLAKLG-SKAQKTARRD-IAHVVATRGNGATTVS---ATMFFASMVGIPVFVTGGIG 61 (217)
Q Consensus 2 Gl~~~ele~la~~~-~~~~K~SrRD-l~~~~a~~~~GaTTVa---aTm~lA~~aGI~VFaTGGiG 61 (217)
|.|.+||.-+.+.- +...++..-+ .-..+..+.+|.-|.- ..++++..+|++|+-.|+=+
T Consensus 49 get~~El~g~~~a~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~ 113 (339)
T PRK00188 49 GETVDEIAGAARAMREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRS 113 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCC
Confidence 77899998887631 1223333222 1112355556655432 45678888999999999744
No 58
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=26.52 E-value=1.2e+02 Score=28.81 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=51.7
Q ss_pred chhhhcC-CCeEEEecccccccc-cccc-cccc-ccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHH
Q 027895 76 DLTELGR-TPVAVVSAGIKSILD-IPRT-LEYL-VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIES 151 (217)
Q Consensus 76 DL~eL~r-tpV~VVcaG~KsILD-i~~T-lE~L-~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~ 151 (217)
-+.+... .||+..|.|.-.+|+ +..+ .++| ++|+++ .+++. +.++- .-.|..|=-|-=.--+++.|++
T Consensus 235 ~vk~~~~~~pii~f~~ga~~~l~~m~~~g~d~l~vdw~v~-l~~a~------~~~~~-~~~lqGNldP~lL~~~~~~i~~ 306 (352)
T COG0407 235 EVKEVKGGVPVIHFCKGAGHLLEDMAKTGFDVLGVDWRVD-LKEAK------KRLGD-KVALQGNLDPALLYAPPEAIKE 306 (352)
T ss_pred HHHHhCCCCcEEEECCCcHHHHHHHHhcCCcEEeeccccC-HHHHH------HHhCC-CceEEeccChHhhcCCHHHHHH
Confidence 3444455 899999999999887 6666 8888 888887 44433 33332 2467777666444456677777
Q ss_pred HHHHHHHHHHH
Q 027895 152 AIQSALREARE 162 (217)
Q Consensus 152 ~I~~Al~eA~~ 162 (217)
-.++-|+....
T Consensus 307 ~~~~iL~~~~~ 317 (352)
T COG0407 307 EVKRILEDGGD 317 (352)
T ss_pred HHHHHHHHhcc
Confidence 66666665544
No 59
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=26.43 E-value=1.2e+02 Score=25.83 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=18.5
Q ss_pred CCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 027895 127 KLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI 165 (217)
Q Consensus 127 ~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi 165 (217)
..|.-++|.+|..+ ..|+.||...||
T Consensus 126 ~~Pdlviv~~~~~~-------------~~ai~Ea~~l~I 151 (193)
T cd01425 126 RLPDLVIVLDPRKE-------------HQAIREASKLGI 151 (193)
T ss_pred cCCCEEEEeCCccc-------------hHHHHHHHHcCC
Confidence 46778888887332 247888888887
No 60
>PRK06256 biotin synthase; Validated
Probab=26.37 E-value=4.8e+02 Score=23.47 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=83.4
Q ss_pred CCHHHHHHHHhcCCCCccc----cccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchh
Q 027895 3 LSTEELERLAKLGSKAQKT----ARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLT 78 (217)
Q Consensus 3 l~~~ele~la~~~~~~~K~----SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~ 78 (217)
++++++++|.+.+-+..-+ |.+-+.. +.++.+-- .+=-++..++.+||+| .+|+|=|. | |+.-|+-..+.
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~-i~~~~t~~-~~i~~i~~a~~~Gi~v-~~~~I~Gl--g-Et~ed~~~~~~ 223 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPN-VVTTHTYE-DRIDTCEMVKAAGIEP-CSGGIIGM--G-ESLEDRVEHAF 223 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhh-cCCCCCHH-HHHHHHHHHHHcCCee-ccCeEEeC--C-CCHHHHHHHHH
Confidence 5788899888764221111 2222222 22222222 2236788999999975 66667664 3 44444444444
Q ss_pred hhcCCCeEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHH
Q 027895 79 ELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALR 158 (217)
Q Consensus 79 eL~rtpV~VVcaG~KsILDi~~TlE~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~ 158 (217)
.|.+..+--|. .--+.=+|.|- |.....-+++|+.+++.. .++-+|... |-.+=..+..+. ..+ ..++
T Consensus 224 ~l~~l~~~~v~--i~~l~P~pGT~--l~~~~~~~~~e~l~~ia~-~Rl~~p~~~-I~~~~gr~~~~~--~~~---~~~~- 291 (336)
T PRK06256 224 FLKELDADSIP--INFLNPIPGTP--LENHPELTPLECLKTIAI-FRLINPDKE-IRIAGGREVNLR--SLQ---PLGL- 291 (336)
T ss_pred HHHhCCCCEEe--ecccccCCCCC--CCCCCCCCHHHHHHHHHH-HHHHCCCCe-eEecCchhhhch--hhH---HHHh-
Confidence 45444432111 11122224441 112233478888887754 444456543 333322322221 111 1122
Q ss_pred HHHHcCC-CCccCChHHHHHHHHHhCCccHHHHHHHHHH
Q 027895 159 EAREKNI-TGNAETPFLLARVNELTGGLSLASNIALVKN 196 (217)
Q Consensus 159 eA~~~gi-~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~n 196 (217)
+...++ .|.++| |.|++...++++++.
T Consensus 292 -~g~~~~~~g~~lt----------~~g~~~~~d~~~~~~ 319 (336)
T PRK06256 292 -GGANSVIVGNYLT----------TVGQPATADLDMIED 319 (336)
T ss_pred -ccCceeeECCccc----------CCCCChHHHHHHHHH
Confidence 233333 677766 999999999999886
No 61
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.06 E-value=1.6e+02 Score=26.25 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHHHHH---HHHHcCCCCccCC---hHHHHH
Q 027895 142 HAASGRVIESAIQSALR---EAREKNITGNAET---PFLLAR 177 (217)
Q Consensus 142 ~~~~~~~i~~~I~~Al~---eA~~~gi~Gk~~T---PflL~~ 177 (217)
.+++.++|+++|++-.+ .|++.|..|=+++ .||+..
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~q 170 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQ 170 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHH
Confidence 46899999998876544 5556788887665 566554
No 62
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.88 E-value=5.4e+02 Score=23.90 Aligned_cols=81 Identities=21% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhhcC
Q 027895 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGR 82 (217)
Q Consensus 3 l~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~r 82 (217)
|++++++.+...+......||.+...- -.-..-...-.+..+|..++.= |+..||+....|.|. .
T Consensus 52 l~~~~v~~~~~~gGs~LgtsR~~~~~~-------~~~~~~~~~~l~~~~Id~Li~I-------GGd~s~~~a~~L~e~-~ 116 (320)
T PRK03202 52 LDLKSVSDIINRGGTILGSARFPEFKD-------EEGRAKAIENLKKLGIDALVVI-------GGDGSYMGAKRLTEH-G 116 (320)
T ss_pred CCHHHHhhHHhCCCcccccCCCCCcCC-------HHHHHHHHHHHHHcCCCEEEEe-------CChHHHHHHHHHHhc-C
Confidence 566777777665445566666442110 0112334455678899888764 345688888888875 4
Q ss_pred CCeEEEeccccccc-ccccc
Q 027895 83 TPVAVVSAGIKSIL-DIPRT 101 (217)
Q Consensus 83 tpV~VVcaG~KsIL-Di~~T 101 (217)
.||+.| ||.|= |++-|
T Consensus 117 i~vigi---PkTIDNDl~gt 133 (320)
T PRK03202 117 IPVIGL---PGTIDNDIAGT 133 (320)
T ss_pred CcEEEe---cccccCCCCCC
Confidence 454443 66664 66654
No 63
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.57 E-value=4.7e+02 Score=23.05 Aligned_cols=108 Identities=22% Similarity=0.239 Sum_probs=69.8
Q ss_pred HCCCcEEEecccccccCCcccccccccchhhhc------CCCeEEEeccccccccccccccccccccCCCHHHHHHHHHH
Q 027895 49 MVGIPVFVTGGIGGVHRHGEHTMDISSDLTELG------RTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDV 122 (217)
Q Consensus 49 ~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL~------rtpV~VVcaG~KsILDi~~TlE~L~~~~~d~~~e~A~~~~~ 122 (217)
..|++=+..+|.-| .+..-|.+.-.+|.++. |.||++=++ -.+.+++.+..+.
T Consensus 33 ~~Gv~gl~~~GstG--E~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-------------------~~st~~~i~~a~~ 91 (289)
T PF00701_consen 33 EAGVDGLVVLGSTG--EFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-------------------ANSTEEAIELARH 91 (289)
T ss_dssp HTTSSEEEESSTTT--TGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-------------------SSSHHHHHHHHHH
T ss_pred HcCCCEEEECCCCc--ccccCCHHHHHHHHHHHHHHccCceEEEecCc-------------------chhHHHHHHHHHH
Confidence 46887777777765 35555777777777753 666555332 2356666666766
Q ss_pred HHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCC--------CCccCChHHHHHHHHH
Q 027895 123 NMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNI--------TGNAETPFLLARVNEL 181 (217)
Q Consensus 123 ~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi--------~Gk~~TPflL~~i~e~ 181 (217)
-+.+|. .++++..|.-- ..+.+.+-++.++-. ++-...| +|.+++|-++.++.+.
T Consensus 92 a~~~Ga-d~v~v~~P~~~--~~s~~~l~~y~~~ia-~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~ 154 (289)
T PF00701_consen 92 AQDAGA-DAVLVIPPYYF--KPSQEELIDYFRAIA-DATDLPIIIYNNPARTGNDLSPETLARLAKI 154 (289)
T ss_dssp HHHTT--SEEEEEESTSS--SCCHHHHHHHHHHHH-HHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS
T ss_pred HhhcCc-eEEEEeccccc--cchhhHHHHHHHHHH-hhcCCCEEEEECCCccccCCCHHHHHHHhcC
Confidence 667775 57777777543 467778877776544 4443322 5999999999999873
No 64
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=25.40 E-value=4.7e+02 Score=22.97 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=84.1
Q ss_pred HHHHHHHHHHCCCc--EEEecccc--cccCCcc-cccccccchhhhcCC----Ce----EEEecccccccccccccccc-
Q 027895 40 VSATMFFASMVGIP--VFVTGGIG--GVHRHGE-HTMDISSDLTELGRT----PV----AVVSAGIKSILDIPRTLEYL- 105 (217)
Q Consensus 40 VaaTm~lA~~aGI~--VFaTGGiG--GVHrga~-~t~DiSaDL~eL~rt----pV----~VVcaG~KsILDi~~TlE~L- 105 (217)
.-+-+.-++.+||+ ++.||--- |-|..+. ..+--|.||.++.+. .. +.-..|--.+-|...-+++|
T Consensus 75 l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~~~~L~ 154 (274)
T cd00537 75 LQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEEDIKRLK 154 (274)
T ss_pred HHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHHHHHHH
Confidence 44555667888999 66666432 2222222 233447899988774 21 11122222333444455555
Q ss_pred ----------ccccCCCHHHHHHHHHHHHhcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHH
Q 027895 106 ----------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLL 175 (217)
Q Consensus 106 ----------~~~~~d~~~e~A~~~~~~~~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL 175 (217)
..+-+-+++..-+.+..-+..|+.-.++...+++.. ... +..-++.. |=.+-++++
T Consensus 155 ~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s----~~~-------l~~~~~~~---Gv~vP~~~~ 220 (274)
T cd00537 155 RKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTS----YKQ-------AKRFAKLC---GVEIPDWLL 220 (274)
T ss_pred HHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCC----HHH-------HHHHHHhh---CCCCCHHHH
Confidence 334444666666666666666666677777776653 222 22222222 778889999
Q ss_pred HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027895 176 ARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 210 (217)
Q Consensus 176 ~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~ 210 (217)
+++.+..+.. ....+...+++.+++.++..
T Consensus 221 ~~l~~~~~~~-----~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 221 ERLEKLKDDA-----EAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 9888643321 22344566677777766544
No 65
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=25.38 E-value=3.8e+02 Score=22.26 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCcEEEecccccccCCcccccc-cccchhhhcCCCeEEEec
Q 027895 51 GIPVFVTGGIGGVHRHGEHTMD-ISSDLTELGRTPVAVVSA 90 (217)
Q Consensus 51 GI~VFaTGGiGGVHrga~~t~D-iSaDL~eL~rtpV~VVca 90 (217)
+=.+..-=|.||.+.+.. .+ ..+|+..--+.||++|+.
T Consensus 103 ~~D~viIEg~gg~~~~~~--~~~~~adl~~~l~~pvilV~~ 141 (222)
T PRK00090 103 QYDLVLVEGAGGLLVPLT--EDLTLADLAKQLQLPVILVVG 141 (222)
T ss_pred hCCEEEEECCCceeccCC--CCCcHHHHHHHhCCCEEEEEC
Confidence 344555555567765533 33 467888878899999874
No 66
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=25.20 E-value=4.4e+02 Score=23.75 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=72.4
Q ss_pred HHHHHHHHCCCcEEEec-ccccccCCcccccccccchh--------hhcCCCeEEEecccccccc-----cccccccc--
Q 027895 42 ATMFFASMVGIPVFVTG-GIGGVHRHGEHTMDISSDLT--------ELGRTPVAVVSAGIKSILD-----IPRTLEYL-- 105 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTG-GiGGVHrga~~t~DiSaDL~--------eL~rtpV~VVcaG~KsILD-----i~~TlE~L-- 105 (217)
.+..++..+|++...|| +++-+..|-..+--++-|-. .=...|++++-.+--+..+ +..+...+
T Consensus 23 ~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~ 102 (254)
T cd06557 23 PTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKE 102 (254)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHH
Confidence 56788999999999998 56656566544433332211 1123565555554455555 44444444
Q ss_pred ---ccccCCCHHHHHHHHHHHHhcCCC-CeEEEEeCCCcC----CC---CChHHHHHHHHHHHHHH--HHcCCCCccCCh
Q 027895 106 ---VPCRVDSPEDCARLIDVNMKLKLG-SGLVIGVPIPRE----HA---ASGRVIESAIQSALREA--REKNITGNAETP 172 (217)
Q Consensus 106 ---~~~~~d~~~e~A~~~~~~~~l~l~-~g~lvanPiP~e----~~---~~~~~i~~~I~~Al~eA--~~~gi~Gk~~TP 172 (217)
.-..+++-.+.+..+++-.+-++| -|-+-.||=-.. +. -+.+..+++|++|.+.. -...|-=..++.
T Consensus 103 aGa~aVkiEd~~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~ 182 (254)
T cd06557 103 AGADAVKLEGGAEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA 182 (254)
T ss_pred hCCeEEEEcCcHHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH
Confidence 223455555666666665555543 112223332111 11 13444677777665432 222222233444
Q ss_pred HHHHHHHHHh
Q 027895 173 FLLARVNELT 182 (217)
Q Consensus 173 flL~~i~e~T 182 (217)
-+.++|.+..
T Consensus 183 ~~~~~i~~~v 192 (254)
T cd06557 183 ELAKEITEAL 192 (254)
T ss_pred HHHHHHHHhC
Confidence 5777777664
No 67
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=25.06 E-value=1.5e+02 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCcEEEecccccc
Q 027895 42 ATMFFASMVGIPVFVTGGIGGV 63 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGGV 63 (217)
.++.....+|++.+..+|-||-
T Consensus 194 ~~a~~L~~aGvd~I~Vsg~gGt 215 (333)
T TIGR02151 194 EVAKLLADAGVSAIDVAGAGGT 215 (333)
T ss_pred HHHHHHHHcCCCEEEECCCCCC
Confidence 5667778899999999998873
No 68
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=25.03 E-value=1.8e+02 Score=23.80 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=41.7
Q ss_pred cCCCeEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhcCCCCeEEEEe
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGV 136 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L~~~~~d~~~e~A~~~~~~~~l~l~~g~lvan 136 (217)
.|.||+|==+|-|.+=||.++ .||+|..+ +..|.-.+++.+-.|+-..++.+.+
T Consensus 27 ~riPVIvEk~~~~~lp~lDK~-KyLVP~dl-tvgqfi~iIRkRiqL~~~kA~flfV 80 (116)
T KOG1654|consen 27 DRIPVIVEKAGKSQLPDLDKK-KYLVPDDL-TVGQFIKIIRKRIQLSPEKAFFLFV 80 (116)
T ss_pred CCCcEEEEecccccCcccccc-eeeccccc-cHHHHHHHHHHHhccChhHeEEEEE
Confidence 378999999999999999987 69999776 4677777786666666556666554
No 69
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=24.87 E-value=50 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.3
Q ss_pred HCCCcEEEecccccccCC
Q 027895 49 MVGIPVFVTGGIGGVHRH 66 (217)
Q Consensus 49 ~aGI~VFaTGGiGGVHrg 66 (217)
.+..||.-|+.||....+
T Consensus 21 ~~~~PVVFTS~Lg~~~~~ 38 (58)
T PF08415_consen 21 AAVMPVVFTSMLGVDDDD 38 (58)
T ss_pred CCcCCEEEeCCCCCCccc
Confidence 467899999999987543
No 70
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.67 E-value=1.9e+02 Score=23.76 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred CcEEEecccccccCCcccccccccchhhhcCCCeEEEecccccccccccc------ccccccccCCCHHHHHHHHHHH-H
Q 027895 52 IPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRT------LEYLVPCRVDSPEDCARLIDVN-M 124 (217)
Q Consensus 52 I~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~T------lE~L~~~~~d~~~e~A~~~~~~-~ 124 (217)
=.|++|||-||+-+ .+..=|.+-+-. |++++-.+...-.+... ..+ ....+.+++++.+++..- .
T Consensus 6 ~~vlItGasg~iG~------~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 6 KVAIVTGASSGIGE------GIARRFAAEGAR-VVVTDRNEEAAERVAAEILAGGRAIA-VAADVSDEADVEAAVAAALE 77 (251)
T ss_pred cEEEEECCCChHHH------HHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEE-EECCCCCHHHHHHHHHHHHH
Confidence 36899999998844 233334444333 55555544322111111 223 334567788888776543 3
Q ss_pred hcCCCCeEEEEeC
Q 027895 125 KLKLGSGLVIGVP 137 (217)
Q Consensus 125 ~l~l~~g~lvanP 137 (217)
+++-...++.+..
T Consensus 78 ~~~~~d~vi~~ag 90 (251)
T PRK07231 78 RFGSVDILVNNAG 90 (251)
T ss_pred HhCCCCEEEECCC
Confidence 3443344444333
No 71
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=24.46 E-value=1.1e+02 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCcCCCCChHHHHHHHHHHHHHHHHcCC
Q 027895 138 IPREHAASGRVIESAIQSALREAREKNI 165 (217)
Q Consensus 138 iP~e~~~~~~~i~~~I~~Al~eA~~~gi 165 (217)
++....++-+..+++|.+|+++|+++|.
T Consensus 2 ~~t~~~Ls~e~a~~ii~aA~a~a~~~g~ 29 (141)
T COG3193 2 LKTKPVLSLELANKIIAAAVAEAQQLGV 29 (141)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHhCC
Confidence 3445568999999999999999999954
No 72
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=24.26 E-value=6.9e+02 Score=24.58 Aligned_cols=142 Identities=16% Similarity=0.102 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHhc---CCCCccccccch----HHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCccc-----
Q 027895 2 RLSTEELERLAKL---GSKAQKTARRDI----AHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEH----- 69 (217)
Q Consensus 2 Gl~~~ele~la~~---~~~~~K~SrRDl----~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~----- 69 (217)
|+|.+|+..|++. .......+..|+ -..++.|..|-.+--....++..+|++|.=+||=|=-|.++.-
T Consensus 50 G~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~ 129 (440)
T PRK05820 50 GMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGDKISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEA 129 (440)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCccHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHh
Confidence 8999999998863 112333342222 2233445555533334467777899999999986544665411
Q ss_pred --ccccccchh----hhcCCCeEEEecccccccccccccccc--ccccCCCHHHH-HHHHHHHHhcCCCCeEEEEeCCCc
Q 027895 70 --TMDISSDLT----ELGRTPVAVVSAGIKSILDIPRTLEYL--VPCRVDSPEDC-ARLIDVNMKLKLGSGLVIGVPIPR 140 (217)
Q Consensus 70 --t~DiSaDL~----eL~rtpV~VVcaG~KsILDi~~TlE~L--~~~~~d~~~e~-A~~~~~~~~l~l~~g~lvanPiP~ 140 (217)
.|++..+.. .|.++-++++.+ +..+----+-+=-| +...+|+.-.+ |.|+.-+-..| ...+|+=+|.=.
T Consensus 130 LpG~~v~ls~e~~~~~l~~~G~~~~~~-~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~A~G-~~~lvlDVk~G~ 207 (440)
T PRK05820 130 IPGYRAFPSNDRFREILKDVGVAIIGQ-TSDLAPADKRLYALRDVTATVESIPLITASILSKKLAEG-LDALVLDVKVGS 207 (440)
T ss_pred CCCCCCCCCHHHHHHHHHHcCeEEEcC-chhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcC-CCeEEEEcCCCC
Confidence 122222221 244566444443 32221111111111 34457775554 44443333444 478888888766
Q ss_pred CCCCC
Q 027895 141 EHAAS 145 (217)
Q Consensus 141 e~~~~ 145 (217)
---+.
T Consensus 208 gAfmk 212 (440)
T PRK05820 208 GAFMK 212 (440)
T ss_pred CCCCC
Confidence 43343
No 73
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=24.05 E-value=7e+02 Score=25.51 Aligned_cols=117 Identities=20% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCeEEEeccccccccccccccc--c---ccccCCCHHHHHHHHHHHHhcCCCCeEEEE-eCC-------------CcCCC
Q 027895 83 TPVAVVSAGIKSILDIPRTLEY--L---VPCRVDSPEDCARLIDVNMKLKLGSGLVIG-VPI-------------PREHA 143 (217)
Q Consensus 83 tpV~VVcaG~KsILDi~~TlE~--L---~~~~~d~~~e~A~~~~~~~~l~l~~g~lva-nPi-------------P~e~~ 143 (217)
.+-.+||.|.|+-=+|..-++. | +-..+|+++|+..+.....+++...-+.|- ||- +..+-
T Consensus 138 p~~~Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvnl~~~~~g~~~~tgg~~SKFG 217 (624)
T TIGR01273 138 PGAPIVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARLASKGSGKWASSGGEKSKFG 217 (624)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCcccCCCCCCCCC
Confidence 3568899999876555544432 1 224789999999999877777655444433 342 24567
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027895 144 ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQL 211 (217)
Q Consensus 144 ~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~~ 211 (217)
++.+++..+++.+.+.-....+.|=.+|- + |--.|++-+++..+-+.++..++.++
T Consensus 218 l~~~ei~~~i~~lk~~~~l~~L~GLHfHi----------G--SQi~d~~~~~~ai~~~~~i~~eL~~~ 273 (624)
T TIGR01273 218 LSATQILEVVRLLEQNGLLDCLKLLHFHI----------G--SQISNIDDVKKGVREAARFYCELRKL 273 (624)
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeC----------C--CCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 88888777665443221111122222211 1 11237788888888899988888763
No 74
>PRK11059 regulatory protein CsrD; Provisional
Probab=23.91 E-value=1e+02 Score=30.47 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEec
Q 027895 2 RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTG 58 (217)
Q Consensus 2 Gl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTG 58 (217)
|.....+++|..-..+..|+++.-+... ......-.-|.+..-+||..||+|+|+|
T Consensus 555 G~g~~s~~~L~~l~~d~iKid~s~v~~i-~~~~~~~~~v~sli~~a~~~~i~viAeg 610 (640)
T PRK11059 555 GLTVVSTSYIKELNVELIKLHPSLVRNI-HKRTENQLFVRSLVGACAGTETQVFATG 610 (640)
T ss_pred CCCcccHHHHHhCCCCEEEECHHHHhhh-hcCchhHHHHHHHHHHHHHCCCeEEEEE
Confidence 5555566777654457789887655433 3334445668999999999999999996
No 75
>PRK06246 fumarate hydratase; Provisional
Probab=23.88 E-value=2.3e+02 Score=26.20 Aligned_cols=55 Identities=13% Similarity=-0.077 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCcc---HHHHHHHHHHHHHHHHHH
Q 027895 144 ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLS---LASNIALVKNNALIGAKI 204 (217)
Q Consensus 144 ~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~S---l~aNiaLl~nNa~laa~I 204 (217)
++.++|.+.+.+++.+|. ..+-|-.++.+.+.-.-++ -+..+.-+.+|+++|++-
T Consensus 4 i~~~~i~~~v~~~~~~a~------~~lp~Dv~~~l~~a~~~E~s~~ak~~l~~ileN~~iA~~~ 61 (280)
T PRK06246 4 IHVEDIIEAVAELCIEAN------YYLPDDVKEALKKAYEKEESPIGKEILKAILENAEIAKEE 61 (280)
T ss_pred ccHHHHHHHHHHHHHHHH------hhCCHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHhcC
Confidence 567778888888888884 4567777777766544333 456788899999998763
No 76
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.73 E-value=86 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHH---HHHHHHHcCCCCccCC
Q 027895 142 HAASGRVIESAIQS---ALREAREKNITGNAET 171 (217)
Q Consensus 142 ~~~~~~~i~~~I~~---Al~eA~~~gi~Gk~~T 171 (217)
.+|+.++|+++|++ |.+.|++.|..|=+++
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46889999888875 4455566899998887
No 77
>PRK04155 chaperone protein HchA; Provisional
Probab=23.69 E-value=35 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=29.6
Q ss_pred EEEecccccccCCcccccccccchhhhc------CCCeEEEecccccccccc
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTELG------RTPVAVVSAGIKSILDIP 99 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL~------rtpV~VVcaG~KsILDi~ 99 (217)
||..||.|+.+. +--|.++.+|- .-||+-||.||-..+...
T Consensus 151 V~iPGG~g~~~d-----L~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~ 197 (287)
T PRK04155 151 VFIPGGHGALIG-----LPESEDVAAALQWALDNDRFIITLCHGPAALLAAG 197 (287)
T ss_pred EEECCCCchHHH-----HhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcC
Confidence 799999987643 22366666653 679999999997666643
No 78
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=23.68 E-value=2.3e+02 Score=26.66 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCC---ccHHHHHHHHHHHHHHHHH
Q 027895 144 ASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGG---LSLASNIALVKNNALIGAK 203 (217)
Q Consensus 144 ~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G---~Sl~aNiaLl~nNa~laa~ 203 (217)
+..+.+.+.+.+|+++|. -.+-|=.++++.+.-+- .--+-++..+..|+++|++
T Consensus 5 i~~e~l~~~v~~a~~~as------~~lp~Dv~~al~~a~~~Ees~~ak~~l~~il~N~~ia~~ 61 (297)
T COG1951 5 IAPEDLTESVADAFQEAS------TYLPPDVVQALAKALEREESEIAKYVLLQILENSRIAAK 61 (297)
T ss_pred hhHHHHHHHHHHHHHHHH------ccCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888883 45666666666665443 3345588999999999875
No 79
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=23.61 E-value=1.5e+02 Score=24.68 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=11.8
Q ss_pred hcCCCeEEEeccccc
Q 027895 80 LGRTPVAVVSAGIKS 94 (217)
Q Consensus 80 L~rtpV~VVcaG~Ks 94 (217)
..++||+++|.+..+
T Consensus 84 ~~~~Pvl~i~g~~~~ 98 (162)
T cd07037 84 YSGVPLLVLTADRPP 98 (162)
T ss_pred hcCCCEEEEECCCCH
Confidence 458999999987664
No 80
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.23 E-value=1.6e+02 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCcEEEecccccccCCcccccccccchhhhcCCCeEEEecccccccccccc-------ccccccccCCCHHHHHHHHHH
Q 027895 51 GIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRT-------LEYLVPCRVDSPEDCARLIDV 122 (217)
Q Consensus 51 GI~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~T-------lE~L~~~~~d~~~e~A~~~~~ 122 (217)
|=.+++|||-||+-+ .+...|.+-+- .|++++-.++..-.+... ..+ .+..+.+++++.+++..
T Consensus 6 ~k~~lItGas~giG~------~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 6 GKVAIITGASSGIGR------AAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVA-LAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCEEEEeCCCChHHH------HHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEE-EEcCCCCHHHHHHHHHH
Confidence 446899999998844 34555554443 455555444332111111 111 34456678888777653
No 81
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=22.45 E-value=58 Score=24.35 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCcEEEecccccccC-----Cccccccccc-----chhhhcC---CCeEEEeccc
Q 027895 42 ATMFFASMVGIPVFVTGGIGGVHR-----HGEHTMDISS-----DLTELGR---TPVAVVSAGI 92 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGGVHr-----ga~~t~DiSa-----DL~eL~r---tpV~VVcaG~ 92 (217)
.+..+|+..|.+|++|..--.=+. |+...+|.+. .+.++.. ..+++-|+|.
T Consensus 5 ~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 5 MAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc
Confidence 457889999999999985321111 5555555544 3555543 4467778873
No 82
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=22.36 E-value=1.5e+02 Score=30.16 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=23.5
Q ss_pred hcCCCCeEEEEeCCCcCCCCChHHHHHHHHHHH
Q 027895 125 KLKLGSGLVIGVPIPREHAASGRVIESAIQSAL 157 (217)
Q Consensus 125 ~l~l~~g~lvanPiP~e~~~~~~~i~~~I~~Al 157 (217)
-+|++..-|+.+|+.++++||.+.+++.|++.+
T Consensus 241 ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~ 273 (608)
T TIGR03811 241 IIGIGLDQVIPVPVDSNYRMDINELEKIIRKLA 273 (608)
T ss_pred HcCCCcccEEEeecCCCCcCCHHHHHHHHHHHH
Confidence 357777677788887777888877777665543
No 83
>PRK06179 short chain dehydrogenase; Provisional
Probab=22.22 E-value=3.7e+02 Score=22.53 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=36.7
Q ss_pred cEEEecccccccCCcccccccccchhhhcCCCeEEEeccccccccccccccccccccCCCHHHHHHHHHHH-HhcCCCCe
Q 027895 53 PVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVN-MKLKLGSG 131 (217)
Q Consensus 53 ~VFaTGGiGGVHrga~~t~DiSaDL~eL~rtpV~VVcaG~KsILDi~~TlE~L~~~~~d~~~e~A~~~~~~-~~l~l~~g 131 (217)
.+++|||-||+-+ .+...|.+.+ ..|++++--+... +-...+++ .+.-+.+++++.+++..- ..++ +--
T Consensus 6 ~vlVtGasg~iG~------~~a~~l~~~g-~~V~~~~r~~~~~-~~~~~~~~-~~~D~~d~~~~~~~~~~~~~~~g-~~d 75 (270)
T PRK06179 6 VALVTGASSGIGR------ATAEKLARAG-YRVFGTSRNPARA-APIPGVEL-LELDVTDDASVQAAVDEVIARAG-RID 75 (270)
T ss_pred EEEEecCCCHHHH------HHHHHHHHCC-CEEEEEeCChhhc-cccCCCee-EEeecCCHHHHHHHHHHHHHhCC-CCC
Confidence 5899999998843 2333333332 2244333322221 11112232 344566888888877643 2344 233
Q ss_pred EEEEeC
Q 027895 132 LVIGVP 137 (217)
Q Consensus 132 ~lvanP 137 (217)
+||.|.
T Consensus 76 ~li~~a 81 (270)
T PRK06179 76 VLVNNA 81 (270)
T ss_pred EEEECC
Confidence 455553
No 84
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.20 E-value=83 Score=23.82 Aligned_cols=27 Identities=41% Similarity=0.776 Sum_probs=21.6
Q ss_pred cCCCchhhHHHHHHHHHHCCCcEEEeccc
Q 027895 32 TRGNGATTVSATMFFASMVGIPVFVTGGI 60 (217)
Q Consensus 32 ~~~~GaTTVaaTm~lA~~aGI~VFaTGGi 60 (217)
.-.+|.||+|. .||...|++++..+++
T Consensus 7 ~~GsGKst~a~--~la~~~~~~~~~~~~i 33 (147)
T cd02020 7 PAGSGKSTVAK--LLAKKLGLPYLDTGGI 33 (147)
T ss_pred CCCCCHHHHHH--HHHHHhCCceeccccC
Confidence 34689999975 5778889999999855
No 85
>PRK15389 fumarate hydratase; Provisional
Probab=22.12 E-value=2.4e+02 Score=28.60 Aligned_cols=57 Identities=12% Similarity=0.012 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHh-C---CccHHHHHHHHHHHHHHHHHH
Q 027895 142 HAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELT-G---GLSLASNIALVKNNALIGAKI 204 (217)
Q Consensus 142 ~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T-~---G~Sl~aNiaLl~nNa~laa~I 204 (217)
.-++++.|.+.+++++.+| ...+-|-.++++.+.- + ...-+..+.-+.+|+++|++-
T Consensus 39 ~~v~~~~i~~~v~~l~~~a------~~~lp~Dv~~aL~~a~~~~E~s~~ak~vl~~ileN~~iA~~~ 99 (536)
T PRK15389 39 LKVEPEALTLLAEEAFHDI------SHLLRPAHLQQLAKILDDPEASDNDKFVALDLLKNANIAAGG 99 (536)
T ss_pred EEECHHHHHHHHHHHHHHH------HhhCCHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4578889999999999998 4567888888888772 3 344567888899999998763
No 86
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=21.99 E-value=55 Score=22.41 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCcEEE-----ecccccccCCcccccc-cc----cchhhhcCCCeEEEecccccccc
Q 027895 40 VSATMFFASMVGIPVFV-----TGGIGGVHRHGEHTMD-IS----SDLTELGRTPVAVVSAGIKSILD 97 (217)
Q Consensus 40 VaaTm~lA~~aGI~VFa-----TGGiGGVHrga~~t~D-iS----aDL~eL~rtpV~VVcaG~KsILD 97 (217)
--.+..+....|+++-- -+|.+|.+.|.+..++ +. .++.+.+.-+|++.|++....|+
T Consensus 18 ~~~~~~l~~~~g~~~~~~~~~~CCG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~~lr 85 (85)
T PF02754_consen 18 EKALRKLLNKLGIEVVIPENQQCCGAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPSCYMQLR 85 (85)
T ss_pred HHHHHHHHHHcCceeeecCCCCCCChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChhHHHhhC
Confidence 34677888999999864 4899998888654111 11 23444556779999998876654
No 87
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=21.93 E-value=24 Score=28.01 Aligned_cols=39 Identities=36% Similarity=0.643 Sum_probs=25.4
Q ss_pred EEEecccccccCCcccccccccchhhh------cCCCeEEEecccccccc
Q 027895 54 VFVTGGIGGVHRHGEHTMDISSDLTEL------GRTPVAVVSAGIKSILD 97 (217)
Q Consensus 54 VFaTGGiGGVHrga~~t~DiSaDL~eL------~rtpV~VVcaG~KsILD 97 (217)
||.-||.|+.++-.. | |.+|.+| ...||+-+|.|| .+|-
T Consensus 41 lilpGG~~~~~~l~~---~-~~~l~~~~~~~~~~~k~iaaIC~g~-~~L~ 85 (147)
T PF01965_consen 41 LILPGGHGGADDLRT---D-SKDLLELLKEFYEAGKPIAAICHGP-AVLA 85 (147)
T ss_dssp EEEE-BTHHHHHHTT---C-HHHHHHHHHHHHHTT-EEEEETTCH-HHHH
T ss_pred EEECCCCchhhhHhh---H-HHHHHHHHHHHHHcCCeEEecCCCc-chhh
Confidence 788999987655321 1 4566665 378999999999 5543
No 88
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=21.75 E-value=1.2e+02 Score=28.09 Aligned_cols=59 Identities=32% Similarity=0.442 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHhcC-CCCccccc---cchHHHHhcCCCchhh---HHHHHHHHHHCCCcEEEeccc
Q 027895 2 RLSTEELERLAKLG-SKAQKTAR---RDIAHVVATRGNGATT---VSATMFFASMVGIPVFVTGGI 60 (217)
Q Consensus 2 Gl~~~ele~la~~~-~~~~K~Sr---RDl~~~~a~~~~GaTT---VaaTm~lA~~aGI~VFaTGGi 60 (217)
|.|.+||.-+++.- +...++.. .++-..+..+.+|--| -....+++..+|+||+-.|+=
T Consensus 43 get~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r 108 (330)
T TIGR01245 43 GETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNR 108 (330)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCC
Confidence 78899998887631 12233322 1222234555556544 224567778899999999973
No 89
>PRK07832 short chain dehydrogenase; Provisional
Probab=21.70 E-value=1.7e+02 Score=24.80 Aligned_cols=13 Identities=46% Similarity=0.813 Sum_probs=9.9
Q ss_pred cEEEecccccccC
Q 027895 53 PVFVTGGIGGVHR 65 (217)
Q Consensus 53 ~VFaTGGiGGVHr 65 (217)
.+++|||-||+.+
T Consensus 2 ~vlItGas~giG~ 14 (272)
T PRK07832 2 RCFVTGAASGIGR 14 (272)
T ss_pred EEEEeCCCCHHHH
Confidence 3788898888844
No 90
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.98 E-value=1.5e+02 Score=27.73 Aligned_cols=18 Identities=17% Similarity=-0.114 Sum_probs=10.2
Q ss_pred HHHHHCCCcEEEeccccc
Q 027895 45 FFASMVGIPVFVTGGIGG 62 (217)
Q Consensus 45 ~lA~~aGI~VFaTGGiGG 62 (217)
.-+..+|.+.+.-|+-||
T Consensus 155 ~~l~~aGad~i~vg~~~G 172 (326)
T PRK05458 155 RELENAGADATKVGIGPG 172 (326)
T ss_pred HHHHHcCcCEEEECCCCC
Confidence 334456666666555555
No 91
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=20.95 E-value=2.6e+02 Score=23.68 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCC-CccCChHHHHHHHHHhCCccHHHHH
Q 027895 144 ASGRVIESAIQSALREAREKNIT-GNAETPFLLARVNELTGGLSLASNI 191 (217)
Q Consensus 144 ~~~~~i~~~I~~Al~eA~~~gi~-Gk~~TPflL~~i~e~T~G~Sl~aNi 191 (217)
++.+++.+++..-++.+ |.. ...++|-.+++|.+.|+|.....|.
T Consensus 192 l~~~e~~~~l~~~l~~~---g~~~~~~~~~~~~~~i~~~s~G~p~~i~~ 237 (269)
T TIGR03015 192 LDREETREYIEHRLERA---GNRDAPVFSEGAFDAIHRFSRGIPRLINI 237 (269)
T ss_pred CCHHHHHHHHHHHHHHc---CCCCCCCcCHHHHHHHHHHcCCcccHHHH
Confidence 56788888888777655 332 3369999999999999998877554
No 92
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=20.83 E-value=1.3e+02 Score=29.24 Aligned_cols=10 Identities=70% Similarity=1.328 Sum_probs=4.9
Q ss_pred CCcEEEeccc
Q 027895 51 GIPVFVTGGI 60 (217)
Q Consensus 51 GI~VFaTGGi 60 (217)
|++|++.|||
T Consensus 331 ~~~viadGGi 340 (486)
T PRK05567 331 GIPVIADGGI 340 (486)
T ss_pred CCeEEEcCCC
Confidence 4555555443
No 93
>PRK07695 transcriptional regulator TenI; Provisional
Probab=20.80 E-value=71 Score=26.73 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=13.6
Q ss_pred HHHHHHCCCcEEEecccc
Q 027895 44 MFFASMVGIPVFVTGGIG 61 (217)
Q Consensus 44 m~lA~~aGI~VFaTGGiG 61 (217)
-.++....|||+++|||.
T Consensus 142 ~~~~~~~~ipvia~GGI~ 159 (201)
T PRK07695 142 SDIARALSIPVIAIGGIT 159 (201)
T ss_pred HHHHHhCCCCEEEEcCCC
Confidence 334566789999999883
No 94
>PF11034 DUF2823: Protein of unknown function (DUF2823); InterPro: IPR020100 This fungal protein increases during glucose depravation. Its function is unknown [].
Probab=20.78 E-value=96 Score=23.24 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCccHHHHHHHHHH-HHHHHHHHHHHHHH
Q 027895 172 PFLLARVNELTGGLSLASNIALVKN-NALIGAKISVALAQ 210 (217)
Q Consensus 172 PflL~~i~e~T~G~Sl~aNiaLl~n-Na~laa~IA~~~~~ 210 (217)
-|+...+.+.|.|-|-++|-...+. |+.++.+...+.-.
T Consensus 9 nYVse~vq~at~~asKEaNK~vAKds~a~igtRa~AA~da 48 (68)
T PF11034_consen 9 NYVSEKVQGATSGASKEANKEVAKDSNASIGTRASAAKDA 48 (68)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 4889999999999999999999985 88899888777544
No 95
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.75 E-value=49 Score=29.52 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=43.2
Q ss_pred CeEEEEeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHH
Q 027895 130 SGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNN 197 (217)
Q Consensus 130 ~g~lvanPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nN 197 (217)
.-+|+.||+=... -+.+.-++.|+.|+. -|..|+++|--||.++.++-.-+.+-.-+.+=.|+
T Consensus 111 VDvLvfNPPYVpt-~~~~i~~~~i~~a~a----GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 111 VDVLVFNPPYVPT-SDEEIGDEGIASAWA----GGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred ccEEEECCCcCcC-CcccchhHHHHHHHh----cCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 3469999963321 133333556666654 78999999999999999888777766555555544
No 96
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=20.65 E-value=2.2e+02 Score=26.54 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHCCCcEEEeccccc
Q 027895 42 ATMFFASMVGIPVFVTGGIGG 62 (217)
Q Consensus 42 aTm~lA~~aGI~VFaTGGiGG 62 (217)
.++.....+|++.+.-+|-||
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCC
Confidence 556667778999999899888
No 97
>COG4199 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=1.1e+02 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=22.9
Q ss_pred CCCeEEEEeCCCcCCCCChHHHHHHHHH
Q 027895 128 LGSGLVIGVPIPREHAASGRVIESAIQS 155 (217)
Q Consensus 128 l~~g~lvanPiP~e~~~~~~~i~~~I~~ 155 (217)
+..|++..|+-|+...+|...+=+..++
T Consensus 148 iddGlitvn~~a~KR~ideS~iYQ~kqe 175 (201)
T COG4199 148 IDDGLITVNQQAEKREIDESQIYQQKQE 175 (201)
T ss_pred eeCCeEEeccCccccCCcHHHHHHHHHH
Confidence 5579999999999999998886664444
No 98
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=20.60 E-value=55 Score=23.63 Aligned_cols=19 Identities=42% Similarity=0.312 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCcEEEecc
Q 027895 41 SATMFFASMVGIPVFVTGG 59 (217)
Q Consensus 41 aaTm~lA~~aGI~VFaTGG 59 (217)
..+|.+|+.+||+|.-|.=
T Consensus 47 ~~~~~lA~~~Gi~v~~~~l 65 (81)
T PF07805_consen 47 YACMRLARAAGIPVPETRL 65 (81)
T ss_dssp HHHHHHHHHTT-----EEE
T ss_pred HHHHHHHHHcCCCcCceEE
Confidence 4789999999999987764
No 99
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=20.23 E-value=89 Score=28.39 Aligned_cols=17 Identities=41% Similarity=0.792 Sum_probs=13.2
Q ss_pred HHHHHHHHCCCcE----------EEec
Q 027895 42 ATMFFASMVGIPV----------FVTG 58 (217)
Q Consensus 42 aTm~lA~~aGI~V----------FaTG 58 (217)
+...++..+|||+ |+||
T Consensus 120 Sa~a~~a~agIPlT~R~~a~s~~~vTg 146 (244)
T COG0007 120 SAIAAPAYAGIPLTHRGVASSFTFVTG 146 (244)
T ss_pred hHHHHHHHcCCceeecCccceEEEEeC
Confidence 3355778999998 8887
Done!