Query 027896
Match_columns 217
No_of_seqs 261 out of 1136
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 5.4E-22 1.2E-26 139.9 7.6 61 6-66 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.9 1.2E-21 2.6E-26 139.8 8.3 63 7-69 1-63 (64)
3 PHA00280 putative NHN endonucl 99.5 3E-14 6.4E-19 114.8 6.6 55 3-60 64-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.3 1.1E-11 2.3E-16 85.3 5.8 52 6-57 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 81.8 5.9 0.00013 26.2 5.5 38 18-55 1-42 (46)
6 cd00018 AP2 DNA-binding domain 76.1 0.89 1.9E-05 31.6 0.1 22 109-131 1-22 (61)
7 PHA02601 int integrase; Provis 68.3 8.4 0.00018 34.0 4.5 44 10-54 2-46 (333)
8 cd00801 INT_P4 Bacteriophage P 61.9 16 0.00035 31.7 5.0 40 16-55 9-50 (357)
9 PF13356 DUF4102: Domain of un 59.4 33 0.00071 25.3 5.6 41 12-52 28-72 (89)
10 PF08846 DUF1816: Domain of un 59.0 19 0.00041 26.7 4.1 32 18-49 9-40 (68)
11 PF05036 SPOR: Sporulation rel 53.9 10 0.00022 25.9 1.9 23 29-51 43-65 (76)
12 PF08471 Ribonuc_red_2_N: Clas 47.6 20 0.00043 28.2 2.8 21 34-54 70-90 (93)
13 PRK09692 integrase; Provisiona 44.4 63 0.0014 29.8 6.1 40 11-50 33-78 (413)
14 PF12286 DUF3622: Protein of u 43.2 62 0.0013 24.3 4.7 43 1-45 1-48 (71)
15 PHA00280 putative NHN endonucl 42.8 13 0.00029 30.1 1.2 28 101-128 59-86 (121)
16 COG0197 RplP Ribosomal protein 26.9 1E+02 0.0022 26.0 4.1 36 19-57 96-131 (146)
17 PF10729 CedA: Cell division a 25.3 1.5E+02 0.0032 22.5 4.2 39 6-47 31-69 (80)
18 PF14112 DUF4284: Domain of un 22.9 57 0.0012 26.0 1.8 18 30-47 2-19 (122)
19 PRK10927 essential cell divisi 21.9 1.2E+02 0.0027 28.6 4.0 33 19-51 273-305 (319)
20 COG2185 Sbm Methylmalonyl-CoA 21.7 66 0.0014 27.0 2.0 18 30-47 42-59 (143)
21 PF01525 Rota_NS26: Rotavirus 21.0 43 0.00093 29.6 0.8 10 188-197 203-212 (212)
22 PF10930 DUF2737: Protein of u 21.0 56 0.0012 23.3 1.2 13 194-206 27-40 (54)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.86 E-value=5.4e-22 Score=139.86 Aligned_cols=61 Identities=64% Similarity=1.123 Sum_probs=58.7
Q ss_pred CceeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 027896 6 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVT 66 (217)
Q Consensus 6 S~yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~ 66 (217)
|+|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 7899999999999999999998899999999999999999999999999999999999974
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.86 E-value=1.2e-21 Score=139.81 Aligned_cols=63 Identities=63% Similarity=1.111 Sum_probs=60.1
Q ss_pred ceeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCCCCC
Q 027896 7 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQSS 69 (217)
Q Consensus 7 ~yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~~y~ 69 (217)
+|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|..+.+|||.+.|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599999888999999999976799999999999999999999999999999999999999886
No 3
>PHA00280 putative NHN endonuclease
Probab=99.51 E-value=3e-14 Score=114.75 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=50.9
Q ss_pred CCCCceeeeEeCC-CCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCc
Q 027896 3 QSNKKFRGVRQRH-WGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60 (217)
Q Consensus 3 ~~sS~yRGVr~r~-~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~ 60 (217)
.|+|+|+||+|++ .|||+|+|++. ||+++||.|+|+|+|+.||+ ++.+++|++|.
T Consensus 64 ~N~SG~kGV~~~k~~~kw~A~I~~~--gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 64 SNTSGLKGLSWSKEREMWRGTVTAE--GKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred CCCCCCCeeEEecCCCeEEEEEEEC--CEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 5789999999876 89999999999 99999999999999999997 78899999885
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.26 E-value=1.1e-11 Score=85.29 Aligned_cols=52 Identities=31% Similarity=0.444 Sum_probs=45.6
Q ss_pred CceeeeEeCC-CCcEEEEEeeCCC---CcEEeecCCcCHHHHHHHHHHHHHHhcCC
Q 027896 6 KKFRGVRQRH-WGSWVSEIRHPLL---KRRVWLGTFETAEEAARAYDQAAILMSGR 57 (217)
Q Consensus 6 S~yRGVr~r~-~GKW~A~I~~~~~---~krv~LGtFdT~EEAArAYD~AAik~~G~ 57 (217)
|+|+||++++ .++|+|+|++... +++++||.|++++||++||+.++++++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7899998877 8999999998321 49999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=81.76 E-value=5.9 Score=26.22 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=28.8
Q ss_pred cEEEEEe--eCCCC--cEEeecCCcCHHHHHHHHHHHHHHhc
Q 027896 18 SWVSEIR--HPLLK--RRVWLGTFETAEEAARAYDQAAILMS 55 (217)
Q Consensus 18 KW~A~I~--~~~~~--krv~LGtFdT~EEAArAYD~AAik~~ 55 (217)
+|..+|. ++..| ++++-+.|.|..||-.+...+-..+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5888883 43334 67888999999999999888766553
No 6
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=76.07 E-value=0.89 Score=31.58 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.0
Q ss_pred cccccCCCCccccccccccCCCC
Q 027896 109 TCLRLDTENSHIGVWQKRAGQRS 131 (217)
Q Consensus 109 S~~Rgvt~~~~~G~WeaR~G~~~ 131 (217)
|.|+||.++.. |+|+++|....
T Consensus 1 s~~~GV~~~~~-gkw~A~I~~~~ 22 (61)
T cd00018 1 SKYRGVRQRPW-GKWVAEIRDPS 22 (61)
T ss_pred CCccCEEECCC-CcEEEEEEeCC
Confidence 57999998776 99999987654
No 7
>PHA02601 int integrase; Provisional
Probab=68.29 E-value=8.4 Score=34.00 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=30.0
Q ss_pred eeEeCCCCcEEEEEeeC-CCCcEEeecCCcCHHHHHHHHHHHHHHh
Q 027896 10 GVRQRHWGSWVSEIRHP-LLKRRVWLGTFETAEEAARAYDQAAILM 54 (217)
Q Consensus 10 GVr~r~~GKW~A~I~~~-~~~krv~LGtFdT~EEAArAYD~AAik~ 54 (217)
+|++.+.|+|+++++.. ..|+++. .+|.|..||-...+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 46677789999999863 2356654 36999998876655544333
No 8
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=61.95 E-value=16 Score=31.75 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=29.0
Q ss_pred CCcEEEEEeeCCCCcEEeecCCc--CHHHHHHHHHHHHHHhc
Q 027896 16 WGSWVSEIRHPLLKRRVWLGTFE--TAEEAARAYDQAAILMS 55 (217)
Q Consensus 16 ~GKW~A~I~~~~~~krv~LGtFd--T~EEAArAYD~AAik~~ 55 (217)
.+.|..+++.+...+++.||+|+ |.++|..+.......+.
T Consensus 9 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 9 SKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred CEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 35699999998666778899996 67777766666555443
No 9
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=59.41 E-value=33 Score=25.28 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=27.0
Q ss_pred EeCCCC--cEEEEEeeCCCCcEEeecCCcC--HHHHHHHHHHHHH
Q 027896 12 RQRHWG--SWVSEIRHPLLKRRVWLGTFET--AEEAARAYDQAAI 52 (217)
Q Consensus 12 r~r~~G--KW~A~I~~~~~~krv~LGtFdT--~EEAArAYD~AAi 52 (217)
+..+.| .|.-+.+...+.+++-||.|.+ ..+|.........
T Consensus 28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~ 72 (89)
T PF13356_consen 28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRA 72 (89)
T ss_dssp EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHH
Confidence 455554 4999998885567899999976 5555554444333
No 10
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=59.00 E-value=19 Score=26.68 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=26.4
Q ss_pred cEEEEEeeCCCCcEEeecCCcCHHHHHHHHHH
Q 027896 18 SWVSEIRHPLLKRRVWLGTFETAEEAARAYDQ 49 (217)
Q Consensus 18 KW~A~I~~~~~~krv~LGtFdT~EEAArAYD~ 49 (217)
.|=++|.-..-.-..|.|-|+|.+||..+---
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~g 40 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPG 40 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhcc
Confidence 47789987756789999999999999988543
No 11
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=53.91 E-value=10 Score=25.94 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=19.0
Q ss_pred CcEEeecCCcCHHHHHHHHHHHH
Q 027896 29 KRRVWLGTFETAEEAARAYDQAA 51 (217)
Q Consensus 29 ~krv~LGtFdT~EEAArAYD~AA 51 (217)
.-+|++|.|+|.++|..+-....
T Consensus 43 ~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 43 WYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp CEEEEECCECTCCHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHh
Confidence 46899999999999988876554
No 12
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=47.61 E-value=20 Score=28.17 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred ecCCcCHHHHHHHHHHHHHHh
Q 027896 34 LGTFETAEEAARAYDQAAILM 54 (217)
Q Consensus 34 LGtFdT~EEAArAYD~AAik~ 54 (217)
-|+|+|+|+|..=||..+..|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 499999999999999877654
No 13
>PRK09692 integrase; Provisional
Probab=44.36 E-value=63 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=25.0
Q ss_pred eEeCCCCc--EEEEEeeCCCCc--EEeecCCc--CHHHHHHHHHHH
Q 027896 11 VRQRHWGS--WVSEIRHPLLKR--RVWLGTFE--TAEEAARAYDQA 50 (217)
Q Consensus 11 Vr~r~~GK--W~A~I~~~~~~k--rv~LGtFd--T~EEAArAYD~A 50 (217)
|+.++.|. |..+.+.+..|+ ++-||.|+ |..+|..+...+
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~ 78 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAES 78 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHH
Confidence 45556554 998887543344 36899999 666665544443
No 14
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=43.17 E-value=62 Score=24.27 Aligned_cols=43 Identities=28% Similarity=0.480 Sum_probs=25.3
Q ss_pred CCCCCCceee-eEeCCCCcEEEEEeeCCCCcEEee----cCCcCHHHHHH
Q 027896 1 MVQSNKKFRG-VRQRHWGSWVSEIRHPLLKRRVWL----GTFETAEEAAR 45 (217)
Q Consensus 1 m~~~sS~yRG-Vr~r~~GKW~A~I~~~~~~krv~L----GtFdT~EEAAr 45 (217)
|.++ .+|.= |... .+.|.|+|.-....++.-+ -.|+|+++|..
T Consensus 1 Msk~-kK~~~rv~q~-~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~ 48 (71)
T PF12286_consen 1 MSKN-KKYDFRVTQK-RNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQA 48 (71)
T ss_pred CCCC-CcccEEEEec-CCceeeeeeeeecCceeEEEecccCcccHHHHHH
Confidence 4555 44432 3333 4779999986544433222 56999988754
No 15
>PHA00280 putative NHN endonuclease
Probab=42.83 E-value=13 Score=30.12 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=22.9
Q ss_pred cCCCCCCCcccccCCCCccccccccccC
Q 027896 101 SKTPSPSMTCLRLDTENSHIGVWQKRAG 128 (217)
Q Consensus 101 s~~~s~~~S~~Rgvt~~~~~G~WeaR~G 128 (217)
.+..+.+.|.|+||..+...|+|+|+|.
T Consensus 59 ~~~~~~N~SG~kGV~~~k~~~kw~A~I~ 86 (121)
T PHA00280 59 MKTPKSNTSGLKGLSWSKEREMWRGTVT 86 (121)
T ss_pred cCCCCCCCCCCCeeEEecCCCeEEEEEE
Confidence 3455677899999988888899999876
No 16
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=26.92 E-value=1e+02 Score=25.99 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=30.5
Q ss_pred EEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCC
Q 027896 19 WVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGR 57 (217)
Q Consensus 19 W~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~ 57 (217)
|+|+|.. |+.++-=..++++.|..|..+|+.||=+.
T Consensus 96 waArVkp---G~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 96 WAARVKP---GRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEecC---CcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 9999975 68887777788999999999999988655
No 17
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=25.28 E-value=1.5e+02 Score=22.46 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=25.0
Q ss_pred CceeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHH
Q 027896 6 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAY 47 (217)
Q Consensus 6 S~yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAY 47 (217)
-+||-|..-+ |||+|.+-.. -.-..--.|..+|.|-|--
T Consensus 31 dgfrdvw~lr-gkyvafvl~g--e~f~rsp~fs~pesaqrwa 69 (80)
T PF10729_consen 31 DGFRDVWQLR-GKYVAFVLMG--EHFRRSPAFSVPESAQRWA 69 (80)
T ss_dssp TTECCECCCC-CEEEEEEESS--S-EEE---BSSHHHHHHHH
T ss_pred ccccceeeec-cceEEEEEec--chhccCCCcCCcHHHHHHH
Confidence 4688875444 9999998875 3333346788888887753
No 18
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=22.90 E-value=57 Score=26.00 Aligned_cols=18 Identities=22% Similarity=0.798 Sum_probs=13.8
Q ss_pred cEEeecCCcCHHHHHHHH
Q 027896 30 RRVWLGTFETAEEAARAY 47 (217)
Q Consensus 30 krv~LGtFdT~EEAArAY 47 (217)
..||||+|.|+++-..=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 468999999987766543
No 19
>PRK10927 essential cell division protein FtsN; Provisional
Probab=21.95 E-value=1.2e+02 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.9
Q ss_pred EEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHH
Q 027896 19 WVSEIRHPLLKRRVWLGTFETAEEAARAYDQAA 51 (217)
Q Consensus 19 W~A~I~~~~~~krv~LGtFdT~EEAArAYD~AA 51 (217)
|.|+|.....--||+||-|.+.++|.++.++..
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk 305 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLK 305 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 566665443346899999999999999977644
No 20
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.68 E-value=66 Score=26.97 Aligned_cols=18 Identities=50% Similarity=0.617 Sum_probs=15.8
Q ss_pred cEEeecCCcCHHHHHHHH
Q 027896 30 RRVWLGTFETAEEAARAY 47 (217)
Q Consensus 30 krv~LGtFdT~EEAArAY 47 (217)
.-+|+|.|.|++||++|-
T Consensus 42 eVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 42 EVINLGLFQTPEEAVRAA 59 (143)
T ss_pred eEEecCCcCCHHHHHHHH
Confidence 569999999999999873
No 21
>PF01525 Rota_NS26: Rotavirus NS26; InterPro: IPR002512 Rotaviruses are dsRNA viruses that appear to infect a wide range of mammals. Gene 11 product is a non-structural phosphoprotein designated as NS26, now more commonly annotated as non-structural protein 5 (NSP5) [].; GO: 0000287 magnesium ion binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0019079 viral genome replication, 0030430 host cell cytoplasm
Probab=21.01 E-value=43 Score=29.64 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=8.6
Q ss_pred HHHHHHHHHH
Q 027896 188 RIALQMIEEL 197 (217)
Q Consensus 188 ~~a~~mieel 197 (217)
.+|+||||||
T Consensus 203 ~Va~qlIedm 212 (212)
T PF01525_consen 203 QVAMQLIEDM 212 (212)
T ss_pred HHHHHHHhcC
Confidence 4799999986
No 22
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=20.99 E-value=56 Score=23.25 Aligned_cols=13 Identities=62% Similarity=0.797 Sum_probs=9.8
Q ss_pred HHHHhccCC-CCCC
Q 027896 194 IEELLNRNC-PSPS 206 (217)
Q Consensus 194 ieell~~~~-~~~~ 206 (217)
-||||.||. ||+-
T Consensus 27 REELlkRnSFpsvn 40 (54)
T PF10930_consen 27 REELLKRNSFPSVN 40 (54)
T ss_pred HHHHHhhcCCCCCc
Confidence 489999887 5654
Done!