Query 027896
Match_columns 217
No_of_seqs 261 out of 1136
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.9E-25 6.4E-30 159.6 6.9 61 6-66 1-62 (63)
2 3igm_B PF14_0633 protein; AP2 93.7 0.053 1.8E-06 39.9 3.5 28 3-32 3-31 (77)
3 1u3e_M HNH homing endonuclease 83.8 0.21 7.1E-06 40.3 -0.0 38 8-48 109-146 (174)
4 1z1b_A Integrase; protein-DNA 75.0 3.2 0.00011 34.8 4.6 42 9-54 14-55 (356)
5 3jtz_A Integrase; four strande 69.3 11 0.00038 27.4 5.8 44 11-54 28-75 (88)
6 3ju0_A Phage integrase; four s 46.8 38 0.0013 25.4 5.5 44 11-54 28-75 (108)
7 1x60_A Sporulation-specific N- 41.1 17 0.00058 24.8 2.5 33 20-52 36-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 36.2 37 0.0013 23.4 3.7 33 20-52 36-68 (81)
9 2ftc_I Mitochondrial ribosomal 30.8 67 0.0023 24.6 4.7 35 19-56 80-115 (118)
10 2yu3_A DNA-directed RNA polyme 27.5 36 0.0012 25.3 2.5 18 180-197 32-49 (95)
11 1b69_A Protein (integrase); in 26.8 58 0.002 23.1 3.3 22 7-28 11-32 (69)
12 2nr5_A Hypothetical protein SO 26.6 45 0.0015 23.1 2.6 19 181-199 3-23 (67)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=1.9e-25 Score=159.60 Aligned_cols=61 Identities=61% Similarity=1.011 Sum_probs=57.5
Q ss_pred CceeeeEeCCCCcEEEEEeeCCC-CcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 027896 6 KKFRGVRQRHWGSWVSEIRHPLL-KRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVT 66 (217)
Q Consensus 6 S~yRGVr~r~~GKW~A~I~~~~~-~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~ 66 (217)
.+||||++++||||+|+|+++.+ |+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 37999999999999999999864 69999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.71 E-value=0.053 Score=39.95 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCCceeeeEeCC-CCcEEEEEeeCCCCcEE
Q 027896 3 QSNKKFRGVRQRH-WGSWVSEIRHPLLKRRV 32 (217)
Q Consensus 3 ~~sS~yRGVr~r~-~GKW~A~I~~~~~~krv 32 (217)
..+|+|+||+|.+ .+.|.|.-..+ |++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~--g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG--ASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET--TEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecC--CeEe
Confidence 5689999998887 79999998887 6543
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=83.85 E-value=0.21 Score=40.32 Aligned_cols=38 Identities=5% Similarity=-0.102 Sum_probs=28.3
Q ss_pred eeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHH
Q 027896 8 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYD 48 (217)
Q Consensus 8 yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD 48 (217)
++||.+...++|.+.|... +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence 3455442246688999886 4567999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=75.00 E-value=3.2 Score=34.84 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=31.3
Q ss_pred eeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHh
Q 027896 9 RGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILM 54 (217)
Q Consensus 9 RGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~ 54 (217)
.||+.++.|.|..+.... ||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~~--gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPRT--GKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTTT--CCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeecC--CeEEECCC--CHHHHHHHHHHHHHHH
Confidence 378777889999876554 88899996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=69.26 E-value=11 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=31.1
Q ss_pred eEeCCCC--cEEEEEeeCCCCcEEeecCCc--CHHHHHHHHHHHHHHh
Q 027896 11 VRQRHWG--SWVSEIRHPLLKRRVWLGTFE--TAEEAARAYDQAAILM 54 (217)
Q Consensus 11 Vr~r~~G--KW~A~I~~~~~~krv~LGtFd--T~EEAArAYD~AAik~ 54 (217)
++..+.| .|+-+.+...+.+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4555654 499888887555778899997 4777777766655544
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=46.81 E-value=38 Score=25.43 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred eEeCCCC--cEEEEEeeCCCCcEEeecCCcC--HHHHHHHHHHHHHHh
Q 027896 11 VRQRHWG--SWVSEIRHPLLKRRVWLGTFET--AEEAARAYDQAAILM 54 (217)
Q Consensus 11 Vr~r~~G--KW~A~I~~~~~~krv~LGtFdT--~EEAArAYD~AAik~ 54 (217)
|+..+.| .|.-+.+...+.+++-||.|.. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555655 4988888875556788999974 777776666555444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=41.14 E-value=17 Score=24.82 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=22.5
Q ss_pred EEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHH
Q 027896 20 VSEIRHPLLKRRVWLGTFETAEEAARAYDQAAI 52 (217)
Q Consensus 20 ~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAi 52 (217)
.+.|.....--+|++|.|.+.++|..+-++...
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344543322368999999999999888665443
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=36.20 E-value=37 Score=23.39 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=23.3
Q ss_pred EEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHH
Q 027896 20 VSEIRHPLLKRRVWLGTFETAEEAARAYDQAAI 52 (217)
Q Consensus 20 ~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAi 52 (217)
.+.|.....--||++|.|.+.++|..+-++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 455554433468999999999999888665443
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=30.83 E-value=67 Score=24.63 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=27.5
Q ss_pred EEEEEeeCCCCcEEe-ecCCcCHHHHHHHHHHHHHHhcC
Q 027896 19 WVSEIRHPLLKRRVW-LGTFETAEEAARAYDQAAILMSG 56 (217)
Q Consensus 19 W~A~I~~~~~~krv~-LGtFdT~EEAArAYD~AAik~~G 56 (217)
|+|.|.. |+-++ ++...+++.|..|...|+.|+=+
T Consensus 80 wva~Vk~---G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA---GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC---CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999985 45444 66668899999999999988743
No 10
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.48 E-value=36 Score=25.31 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027896 180 RTEMDDEERIALQMIEEL 197 (217)
Q Consensus 180 ~~~~~~e~~~a~~mieel 197 (217)
..+|+++|++.+|+||+-
T Consensus 32 ~~~Lt~~E~lVy~~I~~a 49 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA 49 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHh
Confidence 357999999999999984
No 11
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=26.76 E-value=58 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.2
Q ss_pred ceeeeEeCCCCcEEEEEeeCCC
Q 027896 7 KFRGVRQRHWGSWVSEIRHPLL 28 (217)
Q Consensus 7 ~yRGVr~r~~GKW~A~I~~~~~ 28 (217)
-+.|+++++.|+|++++.+..+
T Consensus 11 L~~GesqR~dG~Y~yry~d~~G 32 (69)
T 1b69_A 11 LKTGESQRKDGRYLYKYIDSFG 32 (69)
T ss_dssp CCTTEEECSSSCEEEEEECTTS
T ss_pred cCCCeEEccCCcEEEEEEcCCC
Confidence 3678999999999999988633
No 12
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=26.61 E-value=45 Score=23.07 Aligned_cols=19 Identities=53% Similarity=0.679 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHH--HHHHHhc
Q 027896 181 TEMDDEERIALQ--MIEELLN 199 (217)
Q Consensus 181 ~~~~~e~~~a~~--mieell~ 199 (217)
..|...||||.| |-||-|+
T Consensus 3 ammtkkeriaiqrsmaeealg 23 (67)
T 2nr5_A 3 AMMTKKERIAIQRSMAEEALG 23 (67)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 458889999998 8898875
Done!