BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027897
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 293
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 34 ILSLIGRLLEKSVQKNEMLLDTIKTKD---VTIFHGLRAPTISIQQYIDRIFKYGACSPS 90
++ LI R+L + NE T K+ D +T +H P ISI Y R+ K+ +
Sbjct: 35 LVVLISRMLVSLIAINENSA-TKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLE-H 92
Query: 91 CFVIAHIYMDRFLQKT--DGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 148
C ++ +Y LQ D L SL HR L+T+ VA K + D+F NA+YA+VGGV
Sbjct: 93 CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRC 152
Query: 149 AEMNRMEVKFLFSLDFRL 166
E+N +E FL +++R+
Sbjct: 153 HELNILENDFLKRVNYRI 170
>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGH|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3HVQ|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 329
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
Query: 27 GTVGSPKILSLIGRLLE-------KSVQ--KNEMLLDTIKTKDV----TIFHGLRAPTIS 73
G +GS + S+IGRLLE K+VQ +NE+ +K++++ I L AP
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 74 I----QQYID--RIFKYGACSP-SCFVIAHIYMDR 101
QY D R+F+YG P S ++ Y+DR
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDR 95
>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7A|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7B|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
pdb|3E7B|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
Length = 299
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
Query: 27 GTVGSPKILSLIGRLLE-------KSVQ--KNEMLLDTIKTKDV----TIFHGLRAPTIS 73
G +GS + S+IGRLLE K+VQ +NE+ +K++++ I L AP
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 74 I----QQYID--RIFKYGACSP-SCFVIAHIYMDR 101
QY D R+F+YG P S ++ Y+DR
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDR 95
>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|C Chain C, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|E Chain E, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|G Chain G, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 306
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
Query: 27 GTVGSPKILSLIGRLLE-------KSVQ--KNEMLLDTIKTKDV----TIFHGLRAPTIS 73
G +GS + S+IGRLLE K+VQ +NE+ +K++++ I L AP
Sbjct: 1 GHMGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKI 60
Query: 74 I----QQYID--RIFKYGACSP-SCFVIAHIYMDR 101
QY D R+F+YG P S ++ Y+DR
Sbjct: 61 CGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDR 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,754,880
Number of Sequences: 62578
Number of extensions: 207824
Number of successful extensions: 586
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 6
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)