Query 027897
Match_columns 217
No_of_seqs 183 out of 880
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08613 Cyclin: Cyclin; Inte 100.0 7E-35 1.5E-39 236.2 11.5 134 33-166 2-149 (149)
2 KOG1674 Cyclin [General functi 100.0 5.7E-29 1.2E-33 213.6 13.9 165 23-187 24-199 (218)
3 KOG1675 Predicted cyclin [Gene 99.6 5.8E-16 1.3E-20 137.4 5.7 116 70-185 189-305 (343)
4 PF00134 Cyclin_N: Cyclin, N-t 99.3 6.7E-12 1.4E-16 96.9 8.2 93 73-167 33-127 (127)
5 cd00043 CYCLIN Cyclin box fold 98.8 2.1E-08 4.5E-13 71.0 8.1 84 73-159 4-88 (88)
6 smart00385 CYCLIN domain prese 98.6 2.3E-07 4.9E-12 65.0 7.6 81 76-159 1-82 (83)
7 KOG0656 G1/S-specific cyclin D 98.2 1.4E-05 2.9E-10 73.0 11.5 138 36-178 47-190 (335)
8 KOG0653 Cyclin B and related k 97.7 0.00014 3E-09 67.7 8.2 95 74-170 161-258 (391)
9 TIGR00569 ccl1 cyclin ccl1. Un 97.6 0.00087 1.9E-08 60.7 10.9 105 75-182 60-172 (305)
10 KOG0655 G1/S-specific cyclin E 97.4 0.00043 9.3E-09 63.1 6.8 93 74-167 148-242 (408)
11 COG5333 CCL1 Cdk activating ki 97.1 0.0016 3.6E-08 58.5 6.9 98 76-175 50-155 (297)
12 COG5024 Cyclin [Cell division 96.9 0.002 4.4E-08 60.9 5.9 99 73-173 215-316 (440)
13 KOG4164 Cyclin ik3-1/CABLES [C 96.2 0.0078 1.7E-07 56.1 5.0 109 73-183 384-496 (497)
14 KOG0794 CDK8 kinase-activating 94.5 0.043 9.2E-07 48.1 3.7 95 72-168 42-150 (264)
15 KOG0834 CDK9 kinase-activating 93.8 0.35 7.7E-06 44.2 8.4 109 74-184 42-166 (323)
16 PRK00423 tfb transcription ini 93.7 0.7 1.5E-05 41.7 10.2 102 75-179 126-229 (310)
17 KOG0835 Cyclin L [General func 91.2 1.9 4.1E-05 39.7 9.5 104 76-181 28-153 (367)
18 KOG1674 Cyclin [General functi 90.2 0.16 3.4E-06 43.9 1.6 94 91-184 3-107 (218)
19 PRK00423 tfb transcription ini 90.0 2.5 5.4E-05 38.2 9.3 95 68-165 213-307 (310)
20 KOG2496 Cdk activating kinase 88.2 1.4 3.1E-05 40.0 6.3 95 86-183 73-173 (325)
21 PF00382 TFIIB: Transcription 83.2 7.2 0.00016 27.0 6.7 71 78-151 1-71 (71)
22 PF02984 Cyclin_C: Cyclin, C-t 69.5 8.9 0.00019 28.2 4.3 87 73-161 2-88 (118)
23 COG1405 SUA7 Transcription ini 68.0 66 0.0014 29.0 10.2 106 72-180 98-205 (285)
24 PF11357 Spy1: Cell cycle regu 66.3 36 0.00078 27.3 7.2 95 74-175 15-116 (131)
25 COG1405 SUA7 Transcription ini 63.8 34 0.00073 30.8 7.5 88 69-159 189-276 (285)
26 KOG0654 G2/Mitotic-specific cy 59.2 15 0.00033 34.2 4.5 142 28-171 92-237 (359)
27 PHA02054 hypothetical protein 34.0 1.3E+02 0.0027 22.4 5.0 72 31-103 1-81 (94)
28 PF04219 DUF413: Protein of un 20.1 1.1E+02 0.0025 23.0 2.8 30 128-158 1-30 (93)
No 1
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=100.00 E-value=7e-35 Score=236.24 Aligned_cols=134 Identities=40% Similarity=0.758 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHhhhccccccCC-----------CCcccccCCCCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 027897 33 KILSLIGRLLEKSVQKNEMLLDTIKT-----------KDVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDR 101 (217)
Q Consensus 33 ~~l~~ia~~Le~~i~~nd~~~~~~~~-----------~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~ilALiYidR 101 (217)
+++..|+.++++++..|+.....++. ...+.|++..+|+++|.+|+.||+++++|+++|+++|++||+|
T Consensus 2 ~~~~~i~~~l~~~~~~n~~~~~~s~~~~~~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~R 81 (149)
T PF08613_consen 2 KLVQSIARQLDRLINNNESTAQSSSSSSSPSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILALIYLDR 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCchhhhhcccccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 57899999999999999876443211 1267899999999999999999999999999999999999999
Q ss_pred Hhc---cCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHHHHHHHHhCCCce
Q 027897 102 FLQ---KTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRMEVKFLFSLDFRL 166 (217)
Q Consensus 102 l~~---~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN~LE~~FL~lLd~~L 166 (217)
+.+ .+.+.+++.|+||++++|+|||+||+||.+|+|++||+++|++++|||.||++||.+|||+|
T Consensus 82 l~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 82 LRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT--
T ss_pred HHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCCHHHHHHHHHHHHHHCCCcC
Confidence 998 68899999999999999999999999999999999999999999999999999999999997
No 2
>KOG1674 consensus Cyclin [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=213.59 Aligned_cols=165 Identities=42% Similarity=0.780 Sum_probs=150.2
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhhccccc---cCCCCcccccCCCCCchhHHHHHHHHHHHcCCCchHHHHHHHHH
Q 027897 23 DLGKGTVGSPKILSLIGRLLEKSVQKNEMLLDT---IKTKDVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYM 99 (217)
Q Consensus 23 ~~~~~~~~~p~~l~~ia~~Le~~i~~nd~~~~~---~~~~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~ilALiYi 99 (217)
-.+...+.+|.++..++.++++....|+..... .....++.|++...|+|++++|++||.++++|+++|+++|++|+
T Consensus 24 ~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yleri~k~~~~s~~~lv~al~Yl 103 (218)
T KOG1674|consen 24 PTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYLERIFKYSKCSPECLVLALVYL 103 (218)
T ss_pred cccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHHHHHHHHhcCCchhhhhhhhhh
Confidence 345667888999999999999999999965431 11223899999999999999999999999999999999999999
Q ss_pred HHHhcc-------CCCcccccc-HHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHHHHHHHHhCCCceeecHH
Q 027897 100 DRFLQK-------TDGHLTSLN-VHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRMEVKFLFSLDFRLQVNVE 171 (217)
Q Consensus 100 dRl~~~-------~~~~i~~~n-~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN~LE~~FL~lLd~~L~Vs~~ 171 (217)
||+.++ +...+++.| +||++++++++|+||.+|.+|+|.+||++||++..|||.||.+||..+||++.|+.+
T Consensus 104 dr~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~eln~lE~~~l~~~~~~l~i~~~ 183 (218)
T KOG1674|consen 104 DRFVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTDELNKLELDLLFLLDFRLIISRS 183 (218)
T ss_pred hhhhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChHhhhhhhHHHHhhCCeEEEechh
Confidence 999974 778899999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 027897 172 TFHKFCSQLGKEAAEG 187 (217)
Q Consensus 172 e~~~y~~~L~~~~~~~ 187 (217)
+|..|+..+++....+
T Consensus 184 ~~~~~~~~~~~~~~~~ 199 (218)
T KOG1674|consen 184 EFNLYEDLLEREENLN 199 (218)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998644
No 3
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=99.61 E-value=5.8e-16 Score=137.39 Aligned_cols=116 Identities=22% Similarity=0.398 Sum_probs=108.4
Q ss_pred CchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc-CCCH
Q 027897 70 PTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG-GVST 148 (217)
Q Consensus 70 P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~-gvs~ 148 (217)
|..-+..|+...+.+.++..+|-++.|+|++|+....+..+.+.||+|..+.++++|+|.|+|..++|-.|+++. .+++
T Consensus 189 ~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~tv 268 (343)
T KOG1675|consen 189 GLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQSV 268 (343)
T ss_pred chhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhccH
Confidence 334578899999999999999999999999999987667789999999999999999999999999999999996 5899
Q ss_pred HHHHHHHHHHHHhCCCceeecHHHHHHHHHHHHHHhh
Q 027897 149 AEMNRMEVKFLFSLDFRLQVNVETFHKFCSQLGKEAA 185 (217)
Q Consensus 149 ~eLN~LE~~FL~lLd~~L~Vs~~e~~~y~~~L~~~~~ 185 (217)
.+||.|||+||.+|+||+.|...+|.+|++.|+..+.
T Consensus 269 eDmNe~ERqfLelLqfNinvp~svYAKyYfdlr~Lae 305 (343)
T KOG1675|consen 269 DDMNALERQFLELLQFNINVPSSEYAKYYFDLRCLAE 305 (343)
T ss_pred hhHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999998875
No 4
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.32 E-value=6.7e-12 Score=96.92 Aligned_cols=93 Identities=22% Similarity=0.321 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAE 150 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~e 150 (217)
.+.+|+..+....++++.++.+|+.|+||+..... +...+++.+.++|+++|+|+.++...+...|..++ .++.++
T Consensus 33 ~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~--~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~ 110 (127)
T PF00134_consen 33 IIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRP--VNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKD 110 (127)
T ss_dssp HHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS---TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcc--cccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHH
Confidence 47789999999999999999999999999987543 67788999999999999999999888888888776 479999
Q ss_pred HHHHHHHHHHhCCCcee
Q 027897 151 MNRMEVKFLFSLDFRLQ 167 (217)
Q Consensus 151 LN~LE~~FL~lLd~~L~ 167 (217)
+..||+.+|..|+|+|+
T Consensus 111 i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 111 ILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHCCCCcC
Confidence 99999999999999985
No 5
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.83 E-value=2.1e-08 Score=70.95 Aligned_cols=84 Identities=23% Similarity=0.198 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC-CHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV-STAEM 151 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gv-s~~eL 151 (217)
...+|+.++.+..++++++...|..|++|+.....+ ...+++.+..+|+.+|+|+.++ ..+++.+.+++|. +..++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~~~~~~~~~i 80 (88)
T cd00043 4 TPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSV--LGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHVTGYATEEEI 80 (88)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHHhCCCCHHHH
Confidence 568999999999999999999999999999875433 3678999999999999999998 8889999999999 99999
Q ss_pred HHHHHHHH
Q 027897 152 NRMEVKFL 159 (217)
Q Consensus 152 N~LE~~FL 159 (217)
..+|.++|
T Consensus 81 ~~~e~~il 88 (88)
T cd00043 81 LRMEKLLL 88 (88)
T ss_pred HHHHHHhC
Confidence 99999875
No 6
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.60 E-value=2.3e-07 Score=65.00 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC-CHHHHHHH
Q 027897 76 QYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV-STAEMNRM 154 (217)
Q Consensus 76 ~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gv-s~~eLN~L 154 (217)
+|+.++.+..++++++...|..+++|+....++. ..+++.+..+|+.+|+|..+.. .+++.+.++.|+ +.+++..+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~--~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~~~~~~i~~~ 77 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKFL--KYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGYFTEEEILRM 77 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc--cCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCCCCHHHHHHH
Confidence 4899999999999999999999999998743332 3789999999999999999876 578888899898 99999999
Q ss_pred HHHHH
Q 027897 155 EVKFL 159 (217)
Q Consensus 155 E~~FL 159 (217)
|+++|
T Consensus 78 ~~~il 82 (83)
T smart00385 78 EKLLL 82 (83)
T ss_pred HHHHh
Confidence 99987
No 7
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.4e-05 Score=72.99 Aligned_cols=138 Identities=22% Similarity=0.201 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhhccccccC-CCCcccccCCCCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCc-cccc
Q 027897 36 SLIGRLLEKSVQKNEMLLDTIK-TKDVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGH-LTSL 113 (217)
Q Consensus 36 ~~ia~~Le~~i~~nd~~~~~~~-~~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~-i~~~ 113 (217)
+.|++++++--+.+........ .+.++.++. ----++|.++.+.-+|++.|+.+|.=|+||+.....+. -.++
T Consensus 47 ~~i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R-----~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W 121 (335)
T KOG0656|consen 47 RVLANLLEKEEQHNPSLDYFLCVQKLILSSMR-----KQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPW 121 (335)
T ss_pred HHHHHHHHHHHHhCCCCchhhhcccccccHHH-----HHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchH
Confidence 4577777777766654320000 001222211 13468999999999999999999999999998743332 2345
Q ss_pred cHHHHHHHHHHhhhhhcccCccccccccccc---CCCHHHHHHHHHHHHHhCCCcee-ecHHHHHHHHH
Q 027897 114 NVHRLLITSVMVAAKFIDDAFFNNAYYARVG---GVSTAEMNRMEVKFLFSLDFRLQ-VNVETFHKFCS 178 (217)
Q Consensus 114 n~hRL~ltal~lAsKf~dD~~~sN~~~akv~---gvs~~eLN~LE~~FL~lLd~~L~-Vs~~e~~~y~~ 178 (217)
...-|-++||-+|+|+-+-...--..+--.+ -+..+.|.+||+-.|..|+|++. |++-.|.+|+-
T Consensus 122 ~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl 190 (335)
T KOG0656|consen 122 MLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFL 190 (335)
T ss_pred HHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHH
Confidence 5788889999999999887533333322111 26899999999999999999997 68888877753
No 8
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.00014 Score=67.68 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHH-hhhhhcccCcccccccccc--cCCCHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVM-VAAKFIDDAFFNNAYYARV--GGVSTAE 150 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~-lAsKf~dD~~~sN~~~akv--~gvs~~e 150 (217)
+-+++..++.+++++++++.+|+-++||+..... +...-..-+=++|++ ||+||-+.....-..+..+ +.++.++
T Consensus 161 Lvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~--v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~ 238 (391)
T KOG0653|consen 161 LVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVK--VPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREE 238 (391)
T ss_pred HHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhc--ccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHH
Confidence 6789999999999999999999999999987533 333334555677767 9999943334444555555 4589999
Q ss_pred HHHHHHHHHHhCCCceeecH
Q 027897 151 MNRMEVKFLFSLDFRLQVNV 170 (217)
Q Consensus 151 LN~LE~~FL~lLd~~L~Vs~ 170 (217)
+-.||+..|..|+|++.+..
T Consensus 239 il~mE~~il~~L~f~l~~p~ 258 (391)
T KOG0653|consen 239 ILRMEKYILNVLEFDLSVPT 258 (391)
T ss_pred HHHHHHHHHhccCeeecCCc
Confidence 99999999999999999853
No 9
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.55 E-value=0.00087 Score=60.65 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcC--CCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc-CC---CH
Q 027897 75 QQYIDRIFKYGA--CSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG-GV---ST 148 (217)
Q Consensus 75 ~~yl~rI~~~~~--~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~-gv---s~ 148 (217)
..++.++....+ ++..+.-.|.+|++|+..+..+ ....++-+.+||+.+|+|+-+.. .+-..+.+.. +- ..
T Consensus 60 ~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv--~~~~p~~Ia~tclfLA~KvEE~~-~si~~fv~~~~~~~~~~~ 136 (305)
T TIGR00569 60 EKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSV--MEYHPKIIMLTCVFLACKVEEFN-VSIDQFVGNLKETPLKAL 136 (305)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCch--hhcCHHHHHHHHHHHHHhccccC-cCHHHHHhhccCCchhhH
Confidence 356777788889 9999999999999999875444 34678999999999999976653 3334444332 22 35
Q ss_pred HHHHHHHHHHHHhCCCceeec-H-HHHHHHHHHHHH
Q 027897 149 AEMNRMEVKFLFSLDFRLQVN-V-ETFHKFCSQLGK 182 (217)
Q Consensus 149 ~eLN~LE~~FL~lLd~~L~Vs-~-~e~~~y~~~L~~ 182 (217)
.+|-.+|..+|..|+|+|.|. + .-+..|...+..
T Consensus 137 ~~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~~ 172 (305)
T TIGR00569 137 EQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKT 172 (305)
T ss_pred HHHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHHH
Confidence 899999999999999999993 3 334455555543
No 10
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.00043 Score=63.08 Aligned_cols=93 Identities=24% Similarity=0.316 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAEM 151 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv--~gvs~~eL 151 (217)
+-+++-.+..-.++-.++|-+|.-|+||+.... ..++..+..-+=++||.||+|+-+-...+-..||-| |-.+-.+|
T Consensus 148 LlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~-~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddI 226 (408)
T KOG0655|consen 148 LLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ-VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDI 226 (408)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHH
Confidence 568888888888999999999999999998643 445555677777999999999988888888899988 45899999
Q ss_pred HHHHHHHHHhCCCcee
Q 027897 152 NRMEVKFLFSLDFRLQ 167 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~ 167 (217)
-.||+-.|+.|+|+|.
T Consensus 227 ltmE~iilkal~W~l~ 242 (408)
T KOG0655|consen 227 LTMELIILKALKWELS 242 (408)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999999999996
No 11
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0016 Score=58.48 Aligned_cols=98 Identities=20% Similarity=0.314 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcc---c----CcccccccccccCCCH
Q 027897 76 QYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFID---D----AFFNNAYYARVGGVST 148 (217)
Q Consensus 76 ~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~d---D----~~~sN~~~akv~gvs~ 148 (217)
.++.++..+.+++..++-.|.+|..|+.-... +...+.+-+..+|+.+|+|+-| | .+-.+.-|++.---+.
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s--v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~sr 127 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS--VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSR 127 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc--cccccHHHHHHhheeeeeecccccchhhHHHHHhhccccccccccH
Confidence 77899999999999999999999999975432 5667889999999999999887 2 2334555877888899
Q ss_pred HHHHHHHHHHHHhCCCceee-cHHHHHH
Q 027897 149 AEMNRMEVKFLFSLDFRLQV-NVETFHK 175 (217)
Q Consensus 149 ~eLN~LE~~FL~lLd~~L~V-s~~e~~~ 175 (217)
+.+-.+|.+.|+.|+|+++| .+-.+..
T Consensus 128 ~~Il~~E~~lLEaL~fd~~V~hPy~~l~ 155 (297)
T COG5333 128 ERILEYEFELLEALDFDLHVHHPYKYLE 155 (297)
T ss_pred HHHHHHHHHHHHHcccceEeccccHHHH
Confidence 99999999999999999999 3444433
No 12
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=96.85 E-value=0.002 Score=60.89 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAE 150 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv--~gvs~~e 150 (217)
.|-+|+..++..+++.|+++.+|.-.|||+...+.+.++- ..-+-++|+.||+||-+=.+-.-+.|+-+ |.++.++
T Consensus 215 ~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l~k--~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~~ 292 (440)
T COG5024 215 ILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEK--YQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRDD 292 (440)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccHHH--HHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHHH
Confidence 3678999999999999999999999999999877665532 23444788999999988777766666665 6799999
Q ss_pred HHHHHHHHHHhCCCceee-cHHHH
Q 027897 151 MNRMEVKFLFSLDFRLQV-NVETF 173 (217)
Q Consensus 151 LN~LE~~FL~lLd~~L~V-s~~e~ 173 (217)
+-.+|+..|..++|++.. ++.-|
T Consensus 293 i~~aE~~ml~~l~f~is~P~P~sF 316 (440)
T COG5024 293 IIRAERYMLEVLDFNISWPSPMSF 316 (440)
T ss_pred HHHHHHHHhhhcccccCCCChHHH
Confidence 999999999999999977 45444
No 13
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.0078 Score=56.11 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccc----ccccCCCH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYY----ARVGGVST 148 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~----akv~gvs~ 148 (217)
|+..-+.++-.-++++..+.-+|.+|.++++-+ -.++..|-.-.--+|++||.|+.|=.--.-+.+ -..+.+..
T Consensus 384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLk--glisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~nr 461 (497)
T KOG4164|consen 384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILK--GLISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRLNR 461 (497)
T ss_pred HHHHHHHHhhhccCccceeehhHHHHHHHHHHh--hhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccH
Confidence 577888899999999999999999999999753 345566777777899999999883222222222 12366889
Q ss_pred HHHHHHHHHHHHhCCCceeecHHHHHHHHHHHHHH
Q 027897 149 AEMNRMEVKFLFSLDFRLQVNVETFHKFCSQLGKE 183 (217)
Q Consensus 149 ~eLN~LE~~FL~lLd~~L~Vs~~e~~~y~~~L~~~ 183 (217)
+||-..|.-.|.+|+|.|+++.+|..-.+..|..+
T Consensus 462 rdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~e 496 (497)
T KOG4164|consen 462 RDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQE 496 (497)
T ss_pred HhhhhhhhhHHHhhhhhccCChhhcchHHHHHhhc
Confidence 99999999999999999999999988777776643
No 14
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=94.49 E-value=0.043 Score=48.05 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-c-------cccc-----
Q 027897 72 ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-F-------FNNA----- 138 (217)
Q Consensus 72 isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~-~-------~sN~----- 138 (217)
|-..+++..+..+.++-..++-.|.+|+.|+.-+.+ +...++.-+..||+-+|+|+-+-- . +.+.
T Consensus 42 i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S--~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f 119 (264)
T KOG0794|consen 42 IFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKS--LKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRF 119 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhc
Confidence 344578888888889999999999999999986654 445678889999999999987652 1 1111
Q ss_pred -ccccccCCCHHHHHHHHHHHHHhCCCceee
Q 027897 139 -YYARVGGVSTAEMNRMEVKFLFSLDFRLQV 168 (217)
Q Consensus 139 -~~akv~gvs~~eLN~LE~~FL~lLd~~L~V 168 (217)
+|..-.....+.+-.+|-..|..||+-|.|
T Consensus 120 ~~~~e~~~~~~~~I~e~Ef~llE~Ld~~LIV 150 (264)
T KOG0794|consen 120 SYWPEKFPYERKDILEMEFYLLEALDCYLIV 150 (264)
T ss_pred ccchhhcCCCcCcchhhhhhHHhhhceeEEE
Confidence 466667788899999999999999999988
No 15
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=93.77 E-value=0.35 Score=44.24 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-------cccccccccc---
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-------FFNNAYYARV--- 143 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~-------~~sN~~~akv--- 143 (217)
...||..+-.+.+++.-++..|.+|..|+.-...+.- ...+-+-.+|+.+|.|.-|-- .-++.++...
T Consensus 42 ~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~--~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~~~ 119 (323)
T KOG0834|consen 42 GAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKK--FDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKDLE 119 (323)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhhhhhccccc--CcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCccccc
Confidence 4579999999999999999999999999986554433 234567788899999976432 1112222211
Q ss_pred ----cCCCHHHHHHHHHHHHHhCCCceeecH--HHHHHHHHHHHHHh
Q 027897 144 ----GGVSTAEMNRMEVKFLFSLDFRLQVNV--ETFHKFCSQLGKEA 184 (217)
Q Consensus 144 ----~gvs~~eLN~LE~~FL~lLd~~L~Vs~--~e~~~y~~~L~~~~ 184 (217)
.-=..+++-.+|+-.|..|+|++.|.- .-..+|+..+....
T Consensus 120 ~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~ 166 (323)
T KOG0834|consen 120 LEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADE 166 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhh
Confidence 111367889999999999999999953 44557777776554
No 16
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=93.72 E-value=0.7 Score=41.71 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHH
Q 027897 75 QQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRM 154 (217)
Q Consensus 75 ~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN~L 154 (217)
...|.++....+++..+.=-|..+..++.+...+ ...+..-++.+|+-+|.|. +....+-+.++.+.+++.+|+...
T Consensus 126 ~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~~--rgrs~~~i~AAclYiACR~-~~~prtl~eI~~~~~v~~k~i~~~ 202 (310)
T PRK00423 126 LSELDRIASQLGLPRSVREEAAVIYRKAVEKGLI--RGRSIEGVVAAALYAACRR-CKVPRTLDEIAEVSRVSRKEIGRC 202 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--cCCCHHHHHHHHHHHHHHH-cCCCcCHHHHHHHhCCCHHHHHHH
Confidence 4567888999999999888888888888775433 3346678888999999996 667778889999999999999999
Q ss_pred HHHHHHhCCCceee-cHHHHH-HHHHH
Q 027897 155 EVKFLFSLDFRLQV-NVETFH-KFCSQ 179 (217)
Q Consensus 155 E~~FL~lLd~~L~V-s~~e~~-~y~~~ 179 (217)
++.+++.|+.++.+ ++++|. +|+..
T Consensus 203 ~~~l~k~L~~~~~~~~p~~~i~r~~~~ 229 (310)
T PRK00423 203 YRFLLRELNLKLPPTDPIDYVPRFASE 229 (310)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 99999999988765 344332 44443
No 17
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=91.24 E-value=1.9 Score=39.66 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc---------------cccccc
Q 027897 76 QYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF---------------FNNAYY 140 (217)
Q Consensus 76 ~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~---------------~sN~~~ 140 (217)
.+|+.-.--.+++..|...++|+++|++-...+.. .+..-+..+|+.+|+|.-+.-. +.+...
T Consensus 28 e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~--~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~ 105 (367)
T KOG0835|consen 28 ELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVR--HDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAA 105 (367)
T ss_pred HHHHhhhHhhcCcHHHHHHHHHHHHHHHhcccccc--ccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCc
Confidence 34444445567899999999999999986433332 3567799999999999875431 111111
Q ss_pred -----ccccCCCHHHHHHHHHHHHHhCCCceeec--HHHHHHHHHHHH
Q 027897 141 -----ARVGGVSTAEMNRMEVKFLFSLDFRLQVN--VETFHKFCSQLG 181 (217)
Q Consensus 141 -----akv~gvs~~eLN~LE~~FL~lLd~~L~Vs--~~e~~~y~~~L~ 181 (217)
++..-=-....-..|++.|+.|+|.++|. -..+..|+..|+
T Consensus 106 ~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~ 153 (367)
T KOG0835|consen 106 EHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQ 153 (367)
T ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhc
Confidence 11000013456678999999999999993 456677776553
No 18
>KOG1674 consensus Cyclin [General function prediction only]
Probab=90.17 E-value=0.16 Score=43.93 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHHHHHH--HHhccCC--CccccccHHHHHHHHHHhhhhhcccCcc-----ccccccc-ccC-CCHHHHHHHHHHHH
Q 027897 91 CFVIAHIYMD--RFLQKTD--GHLTSLNVHRLLITSVMVAAKFIDDAFF-----NNAYYAR-VGG-VSTAEMNRMEVKFL 159 (217)
Q Consensus 91 ~~ilALiYid--Rl~~~~~--~~i~~~n~hRL~ltal~lAsKf~dD~~~-----sN~~~ak-v~g-vs~~eLN~LE~~FL 159 (217)
+.+++..|++ |+..... ......+.++.++++++.+.|...|..- +|+.|+. +.| ......|.+|+++|
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yl 82 (218)
T KOG1674|consen 3 TLMTMSVYINPDKLRLNLPDNPTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYL 82 (218)
T ss_pred hhhHhHhhcCccchhhccCcccccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHH
Confidence 5666778888 7765422 2344557899999999999999988765 6888885 344 46889999999999
Q ss_pred HhCCCceeecHHHHHHHHHHHHHHh
Q 027897 160 FSLDFRLQVNVETFHKFCSQLGKEA 184 (217)
Q Consensus 160 ~lLd~~L~Vs~~e~~~y~~~L~~~~ 184 (217)
..+.|...+++++|..=+--+.+..
T Consensus 83 eri~k~~~~s~~~lv~al~Yldr~~ 107 (218)
T KOG1674|consen 83 ERIFKYSKCSPECLVLALVYLDRFV 107 (218)
T ss_pred HHHHHHhcCCchhhhhhhhhhhhhh
Confidence 9999999999999875444444443
No 19
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=89.98 E-value=2.5 Score=38.18 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCC
Q 027897 68 RAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVS 147 (217)
Q Consensus 68 ~~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs 147 (217)
..|.++-.+|+.|+....+++..+.-.|...+.+.... ++ ....++.-+..+|+-+|++... ..-+-+..+++.|++
T Consensus 213 ~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~-~l-~~Gr~P~sIAAAaIYlA~~~~g-~~~t~keIa~v~~Vs 289 (310)
T PRK00423 213 KLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEK-GL-TSGKGPTGLAAAAIYIASLLLG-ERRTQREVAEVAGVT 289 (310)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Cc-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHcCCC
Confidence 46677889999999999999998888887666666542 32 3557889999999999999765 335677889999999
Q ss_pred HHHHHHHHHHHHHhCCCc
Q 027897 148 TAEMNRMEVKFLFSLDFR 165 (217)
Q Consensus 148 ~~eLN~LE~~FL~lLd~~ 165 (217)
..++..-=++++..++..
T Consensus 290 ~~tI~~~ykel~~~l~~~ 307 (310)
T PRK00423 290 EVTVRNRYKELAEKLDIK 307 (310)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999887767777666543
No 20
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=88.24 E-value=1.4 Score=39.99 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccC----CCHHHHHHHHHHHHHh
Q 027897 86 ACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGG----VSTAEMNRMEVKFLFS 161 (217)
Q Consensus 86 ~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~g----vs~~eLN~LE~~FL~l 161 (217)
.+++++.-.|+.|..|+.-... +....+.-++.||+-+|.|. ++.+.+-..|++-.. =....+-..|...|..
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~ns--vme~~pk~I~~tc~flA~Ki-eef~ISieqFvkn~~~~~~k~~e~vLk~E~~llqs 149 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENS--VMEYSPKIIMATCFFLACKI-EEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQS 149 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcc--hhhcChHHHHHHHHHHHhhh-HhheecHHHHHhhccCcccccHHHHHhchHHHHHh
Confidence 4788888999999999864322 23456788999999999995 455555555555332 4578888999999999
Q ss_pred CCCceee--cHHHHHHHHHHHHHH
Q 027897 162 LDFRLQV--NVETFHKFCSQLGKE 183 (217)
Q Consensus 162 Ld~~L~V--s~~e~~~y~~~L~~~ 183 (217)
|+|+|.| +-.-+.-|+..++..
T Consensus 150 L~f~L~vh~PyRPleGFl~D~kt~ 173 (325)
T KOG2496|consen 150 LKFSLTVHNPYRPLEGFLLDMKTR 173 (325)
T ss_pred hhhhheecCCCCchHHHHHHHHHH
Confidence 9999998 334556666666555
No 21
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=83.19 E-value=7.2 Score=27.04 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHH
Q 027897 78 IDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEM 151 (217)
Q Consensus 78 l~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eL 151 (217)
+.|+....+++..+.=.|..+..+.....- ....++.-+..+|+-+|++.. +...+-+..+++.||+.+++
T Consensus 1 I~r~~~~L~L~~~v~~~A~~i~~~~~~~~~--~~Gr~~~~iaAA~iY~acr~~-~~~~t~~eIa~~~~Vs~~tI 71 (71)
T PF00382_consen 1 IPRICSKLGLPEDVRERAKEIYKKAQERGL--LKGRSPESIAAACIYLACRLN-GVPRTLKEIAEAAGVSEKTI 71 (71)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHTTT--STTS-HHHHHHHHHHHHHHHT-TSSSSHHHHHHHCTSSHHHH
T ss_pred ChHHHhHcCCCHHHHHHHHHHHHHHHHcCC--cccCCHHHHHHHHHHHHHHHc-CCCcCHHHHHHHhCCCCCcC
Confidence 568889999999888888888777766432 234567888999999999865 56667788899999998775
No 22
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=69.53 E-value=8.9 Score=28.20 Aligned_cols=87 Identities=8% Similarity=0.096 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 152 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN 152 (217)
+..+|+.++.+..+.+....-+|.+.++-...... .-...+-.+-.+|+.+|.+.++.....+.......|++..++.
T Consensus 2 Tp~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~--fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~t~~~~~~l~ 79 (118)
T PF02984_consen 2 TPYDFLRRFLKISNADQEVRNLARYLLELSLLDYE--FLQYPPSVIAAAAILLARKILGKEPPWPESLEKLTGYDKEDLK 79 (118)
T ss_dssp -HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHH--HTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHHHTS-HHHHH
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhcc--ccCCCHHHHHHHHHHHHHHHhCccccCCccchhhcCCCHHHHH
Confidence 35789999877666666777777777775333222 2334566788899999999887434444445556677766665
Q ss_pred HHHHHHHHh
Q 027897 153 RMEVKFLFS 161 (217)
Q Consensus 153 ~LE~~FL~l 161 (217)
..=..+...
T Consensus 80 ~c~~~i~~~ 88 (118)
T PF02984_consen 80 ECIELIQEL 88 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444333
No 23
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=68.00 E-value=66 Score=28.95 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHH
Q 027897 72 ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEM 151 (217)
Q Consensus 72 isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eL 151 (217)
+....++.++....+++..+---|.....+...+.-... .++.-++.+|+-+|.+ .....-+-...+++.+++.+++
T Consensus 98 ~~a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rG--Rsie~v~AA~iY~acR-~~~~prtl~eIa~a~~V~~kei 174 (285)
T COG1405 98 ITALEELERIASALGLPESVRETAARIYRKAVDKGLLRG--RSIESVAAACIYAACR-INGVPRTLDEIAKALGVSKKEI 174 (285)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcC--CcHHHHHHHHHHHHHH-HcCCCccHHHHHHHHCCCHHHH
Confidence 356778899999999999888888655555555433322 3445555555555555 6667778888999999999999
Q ss_pred HHHHHHHHHhCCCcee-ecHHHHH-HHHHHH
Q 027897 152 NRMEVKFLFSLDFRLQ-VNVETFH-KFCSQL 180 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~-Vs~~e~~-~y~~~L 180 (217)
.+..+.....++=.+- +++.+|- +|+..|
T Consensus 175 ~rtyr~~~~~L~l~~~~~~p~~yi~rf~s~L 205 (285)
T COG1405 175 GRTYRLLVRELKLKIPPVDPSDYIPRFASKL 205 (285)
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence 9999988877765554 4555554 444444
No 24
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=66.32 E-value=36 Score=27.33 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCCchHHHHHH--HHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc-ccccccccccCCC---
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAH--IYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF-FNNAYYARVGGVS--- 147 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilAL--iYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~-~sN~~~akv~gvs--- 147 (217)
|++|+.- =+..+++ .-+++|+ +|..|.- ......+. --|..||=+|+-+-+|.. .+..-+.=+.|-.
T Consensus 15 I~~FL~~-D~~~~~s-DKYLLAmV~~YF~Rag----l~~~~Y~r-i~FFlALYLAndmEED~~~~K~~If~f~~G~~w~~ 87 (131)
T PF11357_consen 15 IQKFLAW-DKCLRVS-DKYLLAMVIAYFSRAG----LFSWQYQR-IHFFLALYLANDMEEDDEEPKYEIFPFLYGKNWRS 87 (131)
T ss_pred HHHHHHh-Ccchhhh-hHHHHHHHHHHHHhcc----cchhhcch-HHHHHHHHHhhHHHhccchHHHHHHHHHHCcchHH
Confidence 5566543 1122233 2344444 5776653 33333332 336677999999998874 4444444444543
Q ss_pred -HHHHHHHHHHHHHhCCCceeecHHHHHH
Q 027897 148 -TAEMNRMEVKFLFSLDFRLQVNVETFHK 175 (217)
Q Consensus 148 -~~eLN~LE~~FL~lLd~~L~Vs~~e~~~ 175 (217)
......+-.+|...++|+..|+.++.++
T Consensus 88 ~~~~F~klr~~~~~~m~~Ra~Vsre~cEE 116 (131)
T PF11357_consen 88 QIPQFHKLRDQFWRRMDWRAWVSREECEE 116 (131)
T ss_pred HhHHHHHHHHHHHHHcCCceeeCHHHHHH
Confidence 4667888999999999999999987543
No 25
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=63.83 E-value=34 Score=30.82 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=65.6
Q ss_pred CCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCH
Q 027897 69 APTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 148 (217)
Q Consensus 69 ~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~ 148 (217)
.|++...+|+.|+....+++.++--.|.-.+.+.... +... ...+--+-.+|+.+|++..+ ..-+.+.-|++.|++.
T Consensus 189 ~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~-g~~~-Gk~P~glAaaaiy~as~l~~-~~~tq~eva~v~~vte 265 (285)
T COG1405 189 IPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRA-GLTA-GKSPAGLAAAAIYLASLLLG-ERRTQKEVAKVAGVTE 265 (285)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-Cccc-CCCchhHHHHHHHHHHHHhC-CchHHHHHHHHhCCee
Confidence 5557889999999999999999998898777777653 2222 44566788899999999777 5556777888999886
Q ss_pred HHHHHHHHHHH
Q 027897 149 AEMNRMEVKFL 159 (217)
Q Consensus 149 ~eLN~LE~~FL 159 (217)
..|..-=.++.
T Consensus 266 vTIrnrykel~ 276 (285)
T COG1405 266 VTIRNRYKELA 276 (285)
T ss_pred eHHHHHHHHHH
Confidence 66644333333
No 26
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=59.23 E-value=15 Score=34.18 Aligned_cols=142 Identities=13% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhccccccCCCCcccccCCCCCch--hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhcc
Q 027897 28 TVGSPKILSLIGRLLEKSVQKNEMLLDTIKTKDVTIFHGLRAPTI--SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQK 105 (217)
Q Consensus 28 ~~~~p~~l~~ia~~Le~~i~~nd~~~~~~~~~~~~~F~~~~~P~i--si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~ 105 (217)
....|.....++.=+..-....|..+..+.+.....-...-.|+. .+.+++-.+.+-.....+++-++..|++|+...
T Consensus 92 ~~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~drfl~~ 171 (359)
T KOG0654|consen 92 VGEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSY 171 (359)
T ss_pred cccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHHHhcc
Confidence 444555655555544443333333211111111111122333443 577888888888899999999999999999864
Q ss_pred CCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHHHHHHHHHHHHhCCCceeecHH
Q 027897 106 TDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAEMNRMEVKFLFSLDFRLQVNVE 171 (217)
Q Consensus 106 ~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv--~gvs~~eLN~LE~~FL~lLd~~L~Vs~~ 171 (217)
..++..--|++=.+|+.+|+||..-..-.-..|..+ .-+.-.++-.||.+.|..+.|.+.+...
T Consensus 172 --~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~ 237 (359)
T KOG0654|consen 172 --KEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTS 237 (359)
T ss_pred --CccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchH
Confidence 223344456677789999999987654322222222 2357789999999999999999988543
No 27
>PHA02054 hypothetical protein
Probab=33.95 E-value=1.3e+02 Score=22.42 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHHHHHhhhccccccC-----CCCcccccCCCCCch----hHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 027897 31 SPKILSLIGRLLEKSVQKNEMLLDTIK-----TKDVTIFHGLRAPTI----SIQQYIDRIFKYGACSPSCFVIAHIYMDR 101 (217)
Q Consensus 31 ~p~~l~~ia~~Le~~i~~nd~~~~~~~-----~~~~~~F~~~~~P~i----si~~yl~rI~~~~~~s~~~~ilALiYidR 101 (217)
+|+++..+|-++..+--- +..++... .+..-++...-.|++ .+.+++..-..+.+|+.+|++++..=-.-
T Consensus 1 m~k~~~~ial~~a~~h~v-~a~pe~Gsydeym~GAmIVY~N~IvpS~dnSv~Flehl~~kw~svkCsd~Cfq~Gy~eAk~ 79 (94)
T PHA02054 1 MPKIIAAVALLVATVHLV-SANPEVGSYDEFMQGAMIVYTNDIVHSKDNSVQFLEYLDTKWGSVGCSDTCFQLGYQEAKL 79 (94)
T ss_pred CchhHHHHHHHHHHhhee-ecCCCCCCHHHHhCccEEEEecccccccccHHHHHHHHHHHHhhcchhHHHHHHhhHHHHH
Confidence 477788888776544221 11111100 001223344456766 25566666678999999999998655555
Q ss_pred Hh
Q 027897 102 FL 103 (217)
Q Consensus 102 l~ 103 (217)
+.
T Consensus 80 Fv 81 (94)
T PHA02054 80 FV 81 (94)
T ss_pred Hh
Confidence 54
No 28
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=20.06 E-value=1.1e+02 Score=23.01 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=23.5
Q ss_pred hhcccCcccccccccccCCCHHHHHHHHHHH
Q 027897 128 KFIDDAFFNNAYYARVGGVSTAEMNRMEVKF 158 (217)
Q Consensus 128 Kf~dD~~~sN~~~akv~gvs~~eLN~LE~~F 158 (217)
+|+||..|... |++-|.++++|-..||..=
T Consensus 1 rF~D~~~fPrG-F~RsGdFTi~Ea~lLe~~G 30 (93)
T PF04219_consen 1 RFFDDKNFPRG-FSRSGDFTIKEAQLLEQYG 30 (93)
T ss_pred CCCcCCCCCCc-cccCCcccHHHHHHHHHHH
Confidence 57888877644 6788889999999998753
Done!