Query 027897
Match_columns 217
No_of_seqs 183 out of 880
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 4.1E-39 1.4E-43 284.5 13.2 152 30-181 31-185 (293)
2 1f5q_B Gamma herpesvirus cycli 98.8 4.2E-08 1.4E-12 84.7 11.0 103 73-177 51-156 (252)
3 2f2c_A Cyclin homolog, V-cycli 98.7 1.4E-07 4.7E-12 80.8 13.0 101 74-176 55-158 (254)
4 1g3n_C V-cyclin; cyclin-depend 98.7 8.5E-08 2.9E-12 82.3 11.1 102 74-177 54-158 (257)
5 3g33_B CCND3 protein; Ser/Thr 98.7 5.7E-08 2E-12 85.9 10.1 101 74-176 74-177 (306)
6 2w96_A G1/S-specific cyclin-D1 98.7 1.5E-07 5.2E-12 81.3 11.6 101 74-176 60-163 (271)
7 2b9r_A Human cyclin B1; cell c 98.7 1.7E-07 5.7E-12 81.1 11.7 102 73-176 40-144 (269)
8 2cch_B Cyclin A2, cyclin-A; co 98.7 1.1E-07 3.9E-12 81.6 10.2 101 74-176 42-145 (260)
9 1w98_B Cyclin E, G1/S-specific 98.6 1.9E-07 6.4E-12 81.5 11.4 103 74-178 53-159 (283)
10 2i53_A Cyclin K; cell cycle, t 98.3 4.6E-06 1.6E-10 71.0 11.1 98 74-174 44-155 (258)
11 1zp2_A RNA polymerase II holoe 98.3 4E-06 1.4E-10 70.8 10.4 100 73-174 30-138 (235)
12 2ivx_A Cyclin-T2; transcriptio 98.2 8.8E-06 3E-10 69.4 11.1 98 74-174 34-150 (257)
13 3rgf_B Cyclin-C; protein kinas 98.1 1.8E-05 6E-10 69.0 11.0 105 74-180 46-168 (285)
14 2pk2_A Cyclin-T1, protein TAT; 98.0 6.4E-06 2.2E-10 74.3 5.9 97 74-173 41-156 (358)
15 1jkw_A Cyclin H; cell cycle, c 97.9 0.00013 4.4E-09 64.8 12.9 103 76-181 62-175 (323)
16 1c9b_A General transcription f 97.9 0.00012 4.1E-09 60.3 10.8 104 74-180 8-113 (207)
17 1ais_B TFB TFIIB, protein (tra 97.4 0.00074 2.5E-08 55.1 9.1 105 73-180 11-119 (200)
18 3k7a_M Transcription initiatio 93.7 0.063 2.2E-06 47.7 4.8 106 73-181 128-247 (345)
19 1ais_B TFB TFIIB, protein (tra 92.9 0.29 1E-05 39.4 7.3 94 69-165 101-196 (200)
20 1c9b_A General transcription f 91.6 0.48 1.6E-05 38.4 7.1 87 69-158 97-183 (207)
21 4bbr_M Transcription initiatio 84.2 3 0.0001 36.9 7.7 90 73-165 128-217 (345)
22 2i53_A Cyclin K; cell cycle, t 81.1 12 0.00041 30.8 10.0 89 73-163 150-250 (258)
23 2ivx_A Cyclin-T2; transcriptio 80.9 14 0.00047 30.6 10.3 89 73-162 145-238 (257)
24 3rgf_B Cyclin-C; protein kinas 80.1 4.1 0.00014 34.7 6.8 95 75-174 158-253 (285)
25 2pk2_A Cyclin-T1, protein TAT; 76.7 6.5 0.00022 34.9 7.3 89 74-163 153-246 (358)
26 1zp2_A RNA polymerase II holoe 68.2 7.4 0.00025 31.9 5.3 84 73-161 133-217 (235)
27 3k7a_M Transcription initiatio 63.9 1.4 4.9E-05 38.8 0.0 89 69-160 230-318 (345)
28 2b9r_A Human cyclin B1; cell c 61.3 9.6 0.00033 32.0 4.8 83 73-158 137-219 (269)
29 2f2c_A Cyclin homolog, V-cycli 60.8 26 0.0009 28.9 7.3 87 73-161 151-245 (254)
30 4bbr_M Transcription initiatio 57.8 2.1 7.3E-05 37.9 0.0 91 69-162 230-320 (345)
31 2cch_B Cyclin A2, cyclin-A; co 55.2 44 0.0015 27.6 7.8 86 73-160 138-224 (260)
32 3g33_B CCND3 protein; Ser/Thr 54.2 17 0.0006 31.2 5.3 87 73-161 170-264 (306)
33 1g3n_C V-cyclin; cyclin-depend 50.5 57 0.002 26.8 7.8 87 73-161 150-245 (257)
34 2w96_A G1/S-specific cyclin-D1 48.1 63 0.0021 26.8 7.7 87 73-161 156-254 (271)
35 1w98_B Cyclin E, G1/S-specific 20.0 3.7E+02 0.013 22.2 8.1 77 73-159 150-237 (283)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=4.1e-39 Score=284.48 Aligned_cols=152 Identities=29% Similarity=0.405 Sum_probs=138.2
Q ss_pred CchhHHHHHHHHHHHHHHhhhccccccC--CCCcccccCCCCCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhc-cC
Q 027897 30 GSPKILSLIGRLLEKSVQKNEMLLDTIK--TKDVTIFHGLRAPTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQ-KT 106 (217)
Q Consensus 30 ~~p~~l~~ia~~Le~~i~~nd~~~~~~~--~~~~~~F~~~~~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~-~~ 106 (217)
+..+++.+||.+|+++|+.||..+...+ ...++.||+..+|+|+|++|+.||+++++|+++|+++|++||+|+.. .+
T Consensus 31 ~~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p 110 (293)
T 2pmi_B 31 SRTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYP 110 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCC
Confidence 3458999999999999999998754322 12488999999999999999999999999999999999999999997 58
Q ss_pred CCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHHHHHHHHhCCCceeecHHHHHHHHHHHH
Q 027897 107 DGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRMEVKFLFSLDFRLQVNVETFHKFCSQLG 181 (217)
Q Consensus 107 ~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN~LE~~FL~lLd~~L~Vs~~e~~~y~~~L~ 181 (217)
++.+++.||||+|++|+|||+||+||.+|+|++||+|||++++|||.||++||.+|||+|+|+.++|..|+.++.
T Consensus 111 ~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 111 DFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQK 185 (293)
T ss_dssp TCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHSC
T ss_pred CCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887653
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.77 E-value=4.2e-08 Score=84.65 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccc--cCCCHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARV--GGVSTAE 150 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv--~gvs~~e 150 (217)
.+-+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.||+|+-+-...+-+.+..+ +.++.+|
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~--v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 36789999999999999999999999999997543 3455788888999999999988766666666655 3589999
Q ss_pred HHHHHHHHHHhCCCceee-cHHHHHHHH
Q 027897 151 MNRMEVKFLFSLDFRLQV-NVETFHKFC 177 (217)
Q Consensus 151 LN~LE~~FL~lLd~~L~V-s~~e~~~y~ 177 (217)
+-+||+..|..|+|+|.+ ++-.|-.++
T Consensus 129 i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 999999999999999987 677776544
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.73 E-value=1.4e-07 Score=80.85 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 151 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~eL 151 (217)
+-+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.+|+|+-+....+-+.+..++ .++.+|+
T Consensus 55 lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 55 LLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 5789999999999999999999999999997644 34567889999999999999887776777777774 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 027897 152 NRMEVKFLFSLDFRLQV-NVETFHKF 176 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~V-s~~e~~~y 176 (217)
-+||+..|..|+|++.+ ++..|-.+
T Consensus 133 ~~mE~~IL~~L~~~l~~~tp~~fl~~ 158 (254)
T 2f2c_A 133 INQEKDILEALKWDTEAVLATDFLIP 158 (254)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGSHHH
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 99999999999999986 55555443
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.71 E-value=8.5e-08 Score=82.28 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 151 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~eL 151 (217)
+-+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.+|+|+-+-...+-+.++.++ .++.+|+
T Consensus 54 lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 54 LGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 6789999999999999999999999999997644 34556888999999999999887666667777774 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHHH
Q 027897 152 NRMEVKFLFSLDFRLQV-NVETFHKFC 177 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~V-s~~e~~~y~ 177 (217)
-+||+..|..|+|++.+ ++..|-.++
T Consensus 132 ~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 132 IDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 99999999999999986 676665543
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.71 E-value=5.7e-08 Score=85.86 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccC--CCHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGG--VSTAEM 151 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~g--vs~~eL 151 (217)
+-+|+..+....+++++++.+|..|+||+..... +.....+-+-++|+.+|+|+-+-...+-+.+..+++ ++.+|+
T Consensus 74 lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 74 LAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHH
Confidence 6789999999999999999999999999997543 455688999999999999998877667777776654 899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 027897 152 NRMEVKFLFSLDFRLQV-NVETFHKF 176 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~V-s~~e~~~y 176 (217)
-+||+..|..|+|+|.+ ++..|-.+
T Consensus 152 ~~mE~~IL~~L~f~l~~~tp~~fl~~ 177 (306)
T 3g33_B 152 RDWEVLVLGKLKWDLAAVIAHDFLAF 177 (306)
T ss_dssp HHHHHHHHHHTTTCCCCCCGGGGHHH
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999987 55555443
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.68 E-value=1.5e-07 Score=81.29 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 151 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~eL 151 (217)
+.+|+.++....+++++++.+|..|+||+.....+ .....+-+-++|+.+|+|+-+-...+-+.++.++ .++.+|+
T Consensus 60 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 60 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV--KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC--CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc--CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 66889999999999999999999999999976443 4457889999999999999886565666666664 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 027897 152 NRMEVKFLFSLDFRLQV-NVETFHKF 176 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~V-s~~e~~~y 176 (217)
-+||+..|..|+|++.+ ++..|-.+
T Consensus 138 ~~mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 138 LQMELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCccCCCCHHHHHHH
Confidence 99999999999999986 66665543
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.67 E-value=1.7e-07 Score=81.13 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAE 150 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~e 150 (217)
.+.+|+..+....+++++++.+|..|+||+..... +...+.+-+.++|+.+|+|+-+....+-+.+..++ .++.+|
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~e 117 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHH
Confidence 36789999999999999999999999999997654 44567899999999999999877666666777765 489999
Q ss_pred HHHHHHHHHHhCCCceee-cHHHHHHH
Q 027897 151 MNRMEVKFLFSLDFRLQV-NVETFHKF 176 (217)
Q Consensus 151 LN~LE~~FL~lLd~~L~V-s~~e~~~y 176 (217)
+-+||+..|..|+|++.+ ++..|-..
T Consensus 118 I~~mE~~IL~~L~f~l~~~tp~~fl~~ 144 (269)
T 2b9r_A 118 IRQMEMKILRALNFGLGRPLPLHFLRR 144 (269)
T ss_dssp HHHHHHHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 999999999999999986 66665543
No 8
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.65 E-value=1.1e-07 Score=81.60 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAEM 151 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~eL 151 (217)
+-+|+..+....+++++++.+|..|+||+.....+ .....+-+-++|+.+|+|+-+....+-+.+..++ .++.+|+
T Consensus 42 lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i 119 (260)
T 2cch_B 42 LVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV--LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQV 119 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC--CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHH
Confidence 66899999999999999999999999999976443 4456888999999999999887666667777665 4899999
Q ss_pred HHHHHHHHHhCCCceee-cHHHHHHH
Q 027897 152 NRMEVKFLFSLDFRLQV-NVETFHKF 176 (217)
Q Consensus 152 N~LE~~FL~lLd~~L~V-s~~e~~~y 176 (217)
-+||+..|..|+|++.+ ++..|-..
T Consensus 120 ~~mE~~iL~~L~~~l~~~tp~~fl~~ 145 (260)
T 2cch_B 120 LRMEHLVLKVLTFDLAAPTVNQFLTQ 145 (260)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999986 56555443
No 9
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.65 E-value=1.9e-07 Score=81.53 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhcc-CCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--CCCHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQK-TDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--GVSTAE 150 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~-~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--gvs~~e 150 (217)
+.+|+..+....+++++++.+|..|+||+... .. +...+.+-+-++|+.+|+|+-+-...+-+.++.++ .++.+|
T Consensus 53 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 53 LLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN--VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 56889999999999999999999999999875 33 34567899999999999999887666677777775 489999
Q ss_pred HHHHHHHHHHhCCCceee-cHHHHHHHHH
Q 027897 151 MNRMEVKFLFSLDFRLQV-NVETFHKFCS 178 (217)
Q Consensus 151 LN~LE~~FL~lLd~~L~V-s~~e~~~y~~ 178 (217)
+.+||+..|..|+|+|.+ ++..|-.++.
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f~ 159 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVYM 159 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHHH
Confidence 999999999999999986 6777665544
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.30 E-value=4.6e-06 Score=70.99 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccc-----------
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAR----------- 142 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~ak----------- 142 (217)
..+++.++....+++++++-.|..|++|+.....+ ...+.+-+.++|+.+|+|+-+ ...+-+.+..
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~~ 120 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQF 120 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh--hhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhhh
Confidence 45889999999999999999999999999876544 345778888999999999876 3333333332
Q ss_pred --ccCCCHHHHHHHHHHHHHhCCCceee-cHHHHH
Q 027897 143 --VGGVSTAEMNRMEVKFLFSLDFRLQV-NVETFH 174 (217)
Q Consensus 143 --v~gvs~~eLN~LE~~FL~lLd~~L~V-s~~e~~ 174 (217)
.+.-+.+++-.||+.+|..|+|++.+ ++..|-
T Consensus 121 ~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl 155 (258)
T 2i53_A 121 GQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155 (258)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence 22335789999999999999999987 555554
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.30 E-value=4e-06 Score=70.77 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc--------
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG-------- 144 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~-------- 144 (217)
...++|.++....+++++++-.|..|++|+.....+.. ..+.+-+.++|+.+|+|+-+ ...+-+.++.+.
T Consensus 30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~-~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEK-GFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCC-CCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc-ccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccchh
Confidence 45688999999999999999999999999987544432 15788999999999999877 444444554443
Q ss_pred CCCHHHHHHHHHHHHHhCCCceee-cHHHHH
Q 027897 145 GVSTAEMNRMEVKFLFSLDFRLQV-NVETFH 174 (217)
Q Consensus 145 gvs~~eLN~LE~~FL~lLd~~L~V-s~~e~~ 174 (217)
.++.+++-.||+.+|+.|+|++.+ ++..|-
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l 138 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSL 138 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence 578999999999999999999987 455443
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.23 E-value=8.8e-06 Score=69.39 Aligned_cols=98 Identities=21% Similarity=0.194 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccccc---------
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVG--------- 144 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~--------- 144 (217)
..+++.++....+++++++-.|..|++|+.....+ ...+.+-+.++|+.+|+|+-+. ..+-+.+..+.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~~ 110 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF--TKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLEP 110 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh--hhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCCC
Confidence 56889999999999999999999999999875444 4467889999999999999775 44444444332
Q ss_pred --C-----CC--HHHHHHHHHHHHHhCCCceee-cHHHHH
Q 027897 145 --G-----VS--TAEMNRMEVKFLFSLDFRLQV-NVETFH 174 (217)
Q Consensus 145 --g-----vs--~~eLN~LE~~FL~lLd~~L~V-s~~e~~ 174 (217)
. +. .+++-.||+.+|..|+|++.+ ++..|-
T Consensus 111 ~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 111 LLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 1 12 799999999999999999987 555544
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.12 E-value=1.8e-05 Score=68.98 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccccc-----------
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYAR----------- 142 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~ak----------- 142 (217)
..++|.++....+++++++-.|.+|++|+.....+ ...+.+-+.++|+.+|+|+-+-...+...+..
T Consensus 46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT--TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc--hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 46889999999999999999999999999875444 34678999999999999987654322222211
Q ss_pred -----ccCCCHHHHHHHHHHHHHhCCCceee-cHHHH-HHHHHHH
Q 027897 143 -----VGGVSTAEMNRMEVKFLFSLDFRLQV-NVETF-HKFCSQL 180 (217)
Q Consensus 143 -----v~gvs~~eLN~LE~~FL~lLd~~L~V-s~~e~-~~y~~~L 180 (217)
-...+.+++-.||+.+|..|+|++.| ++..| ..|+..+
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 11257899999999999999999987 44443 3555544
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.99 E-value=6.4e-06 Score=74.32 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccC--------
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGG-------- 145 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~g-------- 145 (217)
..+||.++....+++.+++..|..|++|+.....+ ...+.+-+.++||.||+|+-+. ..+-+.+..+..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv--~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~~ 117 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSF--TRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQES 117 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccccc
Confidence 56889999999999999999999999999875443 4567899999999999999775 333333333220
Q ss_pred --------C--CHHHHHHHHHHHHHhCCCceee-cHHHH
Q 027897 146 --------V--STAEMNRMEVKFLFSLDFRLQV-NVETF 173 (217)
Q Consensus 146 --------v--s~~eLN~LE~~FL~lLd~~L~V-s~~e~ 173 (217)
+ ..++|-.||+.+|..|+|+|.| ++..|
T Consensus 118 ~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~f 156 (358)
T 2pk2_A 118 LPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTH 156 (358)
T ss_dssp CCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHH
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHH
Confidence 1 2678999999999999999987 44444
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.92 E-value=0.00013 Score=64.75 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=79.4
Q ss_pred HHHHHHHHHcC--CCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCC------
Q 027897 76 QYIDRIFKYGA--CSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVS------ 147 (217)
Q Consensus 76 ~yl~rI~~~~~--~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs------ 147 (217)
++|.++....+ ++..++-.|.+|++|+.....+ ...+.+-+.++|+.+|+|+-+- ..+-+.++.+...+
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~ 138 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV--MEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEK 138 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--hhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHH
Confidence 66888889999 9999999999999999876544 3467899999999999998764 34445555443323
Q ss_pred -HHHHHHHHHHHHHhCCCceee-cHHHH-HHHHHHHH
Q 027897 148 -TAEMNRMEVKFLFSLDFRLQV-NVETF-HKFCSQLG 181 (217)
Q Consensus 148 -~~eLN~LE~~FL~lLd~~L~V-s~~e~-~~y~~~L~ 181 (217)
.+++-.||+.+|..|+|+|.| ++..| ..|+..+.
T Consensus 139 ~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~ 175 (323)
T 1jkw_A 139 ALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175 (323)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence 689999999999999999988 44443 35655553
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.86 E-value=0.00012 Score=60.30 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNR 153 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN~ 153 (217)
-.++|.++....+++..+.-.|..|++|+..+..+. ..+..-+..+|+-+|+|.-+ ...+-+.++.+.+++.+++..
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~--~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~~ 84 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK--GRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCST--TSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcC--CCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHH
Confidence 357899999999999999999999999998765443 45688999999999999865 467888899999999999999
Q ss_pred HHHHHHHhCCCceee-cH-HHHHHHHHHH
Q 027897 154 MEVKFLFSLDFRLQV-NV-ETFHKFCSQL 180 (217)
Q Consensus 154 LE~~FL~lLd~~L~V-s~-~e~~~y~~~L 180 (217)
+|+.+|+.|+|++.+ ++ ....+|+..|
T Consensus 85 ~~~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 85 CFKLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 999999999999976 33 3344555443
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.40 E-value=0.00074 Score=55.13 Aligned_cols=105 Identities=14% Similarity=0.070 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 152 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN 152 (217)
.-.+++.++....++++.+.-.|..|.+|+..+..+. ..+..-+..+|+-+|+|..+ ...+-+.++.+.|++.+++.
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~--gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i~ 87 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIR--GRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEIG 87 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTT--TCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcC--CCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHH
Confidence 3567899999999999999999999999998764433 34678889999999999866 67888899999999999999
Q ss_pred HHHHHHHHhCCCceee---cHHH-HHHHHHHH
Q 027897 153 RMEVKFLFSLDFRLQV---NVET-FHKFCSQL 180 (217)
Q Consensus 153 ~LE~~FL~lLd~~L~V---s~~e-~~~y~~~L 180 (217)
..++.+++.|++++.+ ++.. ..+|+..|
T Consensus 88 ~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 88 RSYRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 9999999999999864 3443 33555544
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.063 Score=47.70 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 152 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN 152 (217)
....+|.++....+++..+.=.|..|..|+.....+. ..+..-+..+||.+|.|. +....+-+.++.+.+++.+||.
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~k--gr~~~~vaaAclyiAcR~-e~~prtl~ei~~~~~v~~keIg 204 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLK--GKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSC--CCCSHHHHTTTTTTTSBT-TBSSCCHHHHHHSSSCCSHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHH-cCCCccHHHHHHHHCCCHHHHH
Confidence 4568899999999999999999999999988754443 345678888999999994 5567788889999999999999
Q ss_pred HHHHHHHHhCC------------Cceee-cHHHHH-HHHHHHH
Q 027897 153 RMEVKFLFSLD------------FRLQV-NVETFH-KFCSQLG 181 (217)
Q Consensus 153 ~LE~~FL~lLd------------~~L~V-s~~e~~-~y~~~L~ 181 (217)
..++.+++.|+ +++.+ ++..|- +|+..|.
T Consensus 205 r~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~ 247 (345)
T 3k7a_M 205 KTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG 247 (345)
T ss_dssp HHHHHHHHHHTCC------------------------------
T ss_pred HHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC
Confidence 99999999998 66654 344433 5555553
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=92.92 E-value=0.29 Score=39.40 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=74.5
Q ss_pred CCc--hhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCC
Q 027897 69 APT--ISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGV 146 (217)
Q Consensus 69 ~P~--isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gv 146 (217)
.|. ++-.+|+.|+.+..+++.++.-.|..++.+.... +. ....++.-+..+|+-+|++..+. ..+.+.++++.|+
T Consensus 101 ~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~-~~-~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~v 177 (200)
T 1ais_B 101 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKR-GL-TSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVARV 177 (200)
T ss_dssp TTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT-TC-CTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHTC
T ss_pred CCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-Cc-ccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhCC
Confidence 455 6778999999999999999888888777777653 22 34467889999999999998764 4567788999999
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 027897 147 STAEMNRMEVKFLFSLDFR 165 (217)
Q Consensus 147 s~~eLN~LE~~FL~lLd~~ 165 (217)
+..++..-=+++...++-+
T Consensus 178 s~~ti~~~~~~l~~~l~~~ 196 (200)
T 1ais_B 178 TEVTVRNRYKELVEKLKIK 196 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHcCCC
Confidence 9999988888887777644
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=91.62 E-value=0.48 Score=38.38 Aligned_cols=87 Identities=8% Similarity=0.059 Sum_probs=65.0
Q ss_pred CCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCH
Q 027897 69 APTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 148 (217)
Q Consensus 69 ~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~ 148 (217)
.|...-..|+.|+.+..+++.++.-.|...+.+... .+. .....++-+..+|+-+|++..+ ...+.+.|+++.|++.
T Consensus 97 l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~-~~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~ 173 (207)
T 1c9b_A 97 VDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVE-LDL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVAD 173 (207)
T ss_dssp CCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCH
T ss_pred cCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCH
Confidence 344566899999999999998887777666666554 232 3356789999999999999875 4456778889999888
Q ss_pred HHHHHHHHHH
Q 027897 149 AEMNRMEVKF 158 (217)
Q Consensus 149 ~eLN~LE~~F 158 (217)
.++..-=+++
T Consensus 174 ~tI~~~~~~l 183 (207)
T 1c9b_A 174 VTIRQSYRLI 183 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776554443
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=84.17 E-value=3 Score=36.95 Aligned_cols=90 Identities=8% Similarity=-0.050 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 152 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN 152 (217)
.....|.++....+++..+.=.|..+..++.....+. ..+..-+..+|+-+|.|- +....+-+.++.+.+++.+||.
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~r--Grs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~keig 204 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLK--GKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTT--TCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--CCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHHHH
Confidence 4677899999999999999888988888887654333 345788888999999995 4577788889999999999999
Q ss_pred HHHHHHHHhCCCc
Q 027897 153 RMEVKFLFSLDFR 165 (217)
Q Consensus 153 ~LE~~FL~lLd~~ 165 (217)
...+.+++.|+..
T Consensus 205 r~~k~l~~~L~l~ 217 (345)
T 4bbr_M 205 KTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHCC---
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999864
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=81.08 E-value=12 Score=30.84 Aligned_cols=89 Identities=9% Similarity=-0.017 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-c-----cccccccc
Q 027897 73 SIQQYIDRIFKYGACSP----SCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-F-----FNNAYYAR 142 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~----~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~-~-----~sN~~~ak 142 (217)
+-.+|+.++++..+.+. ...-.|..++....... . .-...+.-+-++|+.+|.+..+-. . .....|-.
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~-~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~ 227 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTT-L-SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWE 227 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTT-G-GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCC-c-hhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHH
Confidence 45789999999988886 45566666666654322 2 234678899999999999988642 1 12334555
Q ss_pred c--cCCCHHHHHHHHHHHHHhCC
Q 027897 143 V--GGVSTAEMNRMEVKFLFSLD 163 (217)
Q Consensus 143 v--~gvs~~eLN~LE~~FL~lLd 163 (217)
. .|++..++...-.+++.+.+
T Consensus 228 ~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 228 QFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp GTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HhccCCCHHHHHHHHHHHHHHHh
Confidence 4 59999999999999888754
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=80.89 E-value=14 Score=30.58 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc---ccccccccc--cCCC
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF---FNNAYYARV--GGVS 147 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~---~sN~~~akv--~gvs 147 (217)
.-+.|+.++++..+.+.+..-.|..++.......+..+ ...++-+-++|+.+|.+.++-.. -....|... .|++
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l-~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~ 223 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCL-QYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVT 223 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGG-TSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHH-cCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCC
Confidence 45789999999999988877777766655442223322 35688999999999999986331 123457764 3799
Q ss_pred HHHHHHHHHHHHHhC
Q 027897 148 TAEMNRMEVKFLFSL 162 (217)
Q Consensus 148 ~~eLN~LE~~FL~lL 162 (217)
..++...-.+++.+.
T Consensus 224 ~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 224 LELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888764
No 24
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=80.08 E-value=4.1 Score=34.74 Aligned_cols=95 Identities=6% Similarity=-0.056 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHHHH
Q 027897 75 QQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMNRM 154 (217)
Q Consensus 75 ~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN~L 154 (217)
++|+.++++..+.+....-.|..++...... ... -...++-+-.+|+.+|.+..+... ..|-...|++..++...
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t-~~~-l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~~ 232 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT-DLC-LLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKILEI 232 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-SHH-HHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-Chh-hccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHHH
Confidence 7899999998888888778887777665432 222 235688899999999999887432 56888899999999999
Q ss_pred HHHHHHhCC-CceeecHHHHH
Q 027897 155 EVKFLFSLD-FRLQVNVETFH 174 (217)
Q Consensus 155 E~~FL~lLd-~~L~Vs~~e~~ 174 (217)
-.+++.+.+ |+.+-..+++.
T Consensus 233 ~~~il~ly~~~~~~~~~~~~~ 253 (285)
T 3rgf_B 233 IRVILKLYEQWKNFDERKEMA 253 (285)
T ss_dssp HHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHhcccCchhhhHH
Confidence 999998854 55544444443
No 25
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=76.67 E-value=6.5 Score=34.85 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCc---ccccccccc--cCCCH
Q 027897 74 IQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAF---FNNAYYARV--GGVST 148 (217)
Q Consensus 74 i~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~---~sN~~~akv--~gvs~ 148 (217)
-+.||.++++..+.+.+..-+|..++..........+ ...++-+-++|+.+|.++++-.. .....|..+ .+++.
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l-~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~ 231 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSL-QYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTL 231 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGG-TSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-ccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCH
Confidence 4689999999988888877777777665543233322 35688889999999999986321 123567766 37899
Q ss_pred HHHHHHHHHHHHhCC
Q 027897 149 AEMNRMEVKFLFSLD 163 (217)
Q Consensus 149 ~eLN~LE~~FL~lLd 163 (217)
.+|...-.+++.+++
T Consensus 232 ~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 232 ELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=68.21 E-value=7.4 Score=31.89 Aligned_cols=84 Identities=6% Similarity=0.000 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcc-cccccccccCCCHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFF-NNAYYARVGGVSTAEM 151 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~-sN~~~akv~gvs~~eL 151 (217)
.-.+|+.++++..+++.+..-.|..++...... .. .-...+.-+-.+|+.+|.+..+...- ....|+ |++..++
T Consensus 133 ~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~-~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~---~~~~~~i 207 (235)
T 1zp2_A 133 HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYAS-SL-CLMAHPHQLAYAALLISCCNDENTIPKLLDLIK---STDAFKV 207 (235)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTT-TG-GGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC---HHHHHHH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-Cc-hhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh---cCCHHHH
Confidence 347899999998899988888887777776542 22 23457889999999999998653211 111222 5566665
Q ss_pred HHHHHHHHHh
Q 027897 152 NRMEVKFLFS 161 (217)
Q Consensus 152 N~LE~~FL~l 161 (217)
...=.+++.+
T Consensus 208 ~~~~~~i~~l 217 (235)
T 1zp2_A 208 ILCVQRIISI 217 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 27
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=63.92 E-value=1.4 Score=38.83 Aligned_cols=89 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCH
Q 027897 69 APTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 148 (217)
Q Consensus 69 ~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~ 148 (217)
.|.+.-.+|+.|+.+..+++.++.-.|.-++.+.... . .....+++-+..+|+.+|++.++. ..+.+.|+++.||+.
T Consensus 230 ~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~-~-l~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~~~Vse 306 (345)
T 3k7a_M 230 MSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI-K-EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVTE 306 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-c-hhcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCH
Confidence 4445566788888888788777766776666655442 2 223456778889999999998764 346788999999988
Q ss_pred HHHHHHHHHHHH
Q 027897 149 AEMNRMEVKFLF 160 (217)
Q Consensus 149 ~eLN~LE~~FL~ 160 (217)
..|..-=++++.
T Consensus 307 ~TIr~~ykel~~ 318 (345)
T 3k7a_M 307 GTIKSGYKILYE 318 (345)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 777654444443
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=61.30 E-value=9.6 Score=32.00 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHHH
Q 027897 73 SIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEMN 152 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eLN 152 (217)
+-.+|+.++.+..+.+....-+|..+++.-..... .....+.-+-.+|+.+|.+.++.. -++...+.+.|++..++.
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~--~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l~ 213 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYD--MVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESLL 213 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGG--GSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhh--hhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHHH
Confidence 46799999999999888877777766666543322 234566788899999999988765 234444556788766654
Q ss_pred HHHHHH
Q 027897 153 RMEVKF 158 (217)
Q Consensus 153 ~LE~~F 158 (217)
..=..+
T Consensus 214 ~~~~~l 219 (269)
T 2b9r_A 214 PVMQHL 219 (269)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 443333
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=60.78 E-value=26 Score=28.89 Aligned_cols=87 Identities=6% Similarity=-0.029 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHcCCCchHH----HHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccc----cccccccc
Q 027897 73 SIQQYIDRIFKYGACSPSCF----VIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFN----NAYYARVG 144 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~----ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~s----N~~~akv~ 144 (217)
+-.+|+.++++..+.+.+.. -.|..+++.-.. ........+.-+-.+|+.+|.+...+..++ ....+++.
T Consensus 151 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~--d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t 228 (254)
T 2f2c_A 151 LATDFLIPLCNALKIPEDLWPQLYEAASTTICKALI--QPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL 228 (254)
T ss_dssp CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTT--SGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHc--CcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 45788999988888887652 234444443222 222344567788889999999986343332 34445567
Q ss_pred CCCHHHHHHHHHHHHHh
Q 027897 145 GVSTAEMNRMEVKFLFS 161 (217)
Q Consensus 145 gvs~~eLN~LE~~FL~l 161 (217)
|++..++..-=..+..+
T Consensus 229 g~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 229 NFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 88888777665555544
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=57.80 E-value=2.1 Score=37.88 Aligned_cols=91 Identities=8% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHcCCCchHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCH
Q 027897 69 APTISIQQYIDRIFKYGACSPSCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVST 148 (217)
Q Consensus 69 ~P~isi~~yl~rI~~~~~~s~~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~ 148 (217)
.|.+...+|+.|+....+++.++.-.|.-.+.+.... + .....++.-+..+|+.+|+...+. ..+.+..+++.||+.
T Consensus 230 ~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~-~-i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v~~Vse 306 (345)
T 4bbr_M 230 MSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI-K-EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVTE 306 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-c-cccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHHHCCCH
Confidence 5777888999999999999888888887777666552 2 233456777888999999997764 457788899999987
Q ss_pred HHHHHHHHHHHHhC
Q 027897 149 AEMNRMEVKFLFSL 162 (217)
Q Consensus 149 ~eLN~LE~~FL~lL 162 (217)
.-+..-=.+|+..+
T Consensus 307 ~TIr~rykel~~~~ 320 (345)
T 4bbr_M 307 GTIKSGYKILYEHR 320 (345)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77765555554443
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=55.16 E-value=44 Score=27.59 Aligned_cols=86 Identities=9% Similarity=0.018 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccccccCCCHHHH
Q 027897 73 SIQQYIDRIFKYGACSP-SCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYARVGGVSTAEM 151 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~-~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~akv~gvs~~eL 151 (217)
+-.+|+.++++..+.+. ...-+|..+++.-..... ......+.-+-.+|+.+|.+.++.. .++...+.++|++..++
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~-~~~~~~Ps~iAaAai~lA~~~~~~~-~w~~~l~~~~g~~~~~i 215 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDAD-PYLKYLPSVIAGAAFHLALYTVTGQ-SWPESLIRKTGYTLESL 215 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHH-HHTTSCHHHHHHHHHHHHHHHHHSC-CSCHHHHHHHCCCHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHH-HHhCCCHHHHHHHHHHHHHHHhCCC-cchHHHHHHhCcCHHHH
Confidence 57899999999998876 555666655554322211 0233567788889999999988752 22333344567777766
Q ss_pred HHHHHHHHH
Q 027897 152 NRMEVKFLF 160 (217)
Q Consensus 152 N~LE~~FL~ 160 (217)
...=..++.
T Consensus 216 ~~~~~~l~~ 224 (260)
T 2cch_B 216 KPCLMDLHQ 224 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 654444443
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=54.17 E-value=17 Score=31.18 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHcCCCchHH----HHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCccccccc----cccc
Q 027897 73 SIQQYIDRIFKYGACSPSCF----VIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYY----ARVG 144 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~----ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~----akv~ 144 (217)
+..+|+.++++..+.+.... -.|..+++--... ...-...+.-+-.+|+.+|.+.++....+...| +++.
T Consensus 170 tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d--~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t 247 (306)
T 3g33_B 170 IAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATD--YTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT 247 (306)
T ss_dssp CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHC--GGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh--hhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 34678888888877765432 2333444422221 222345677888999999999998665444444 3456
Q ss_pred CCCHHHHHHHHHHHHHh
Q 027897 145 GVSTAEMNRMEVKFLFS 161 (217)
Q Consensus 145 gvs~~eLN~LE~~FL~l 161 (217)
|++..++...-..++.+
T Consensus 248 g~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 248 GTEVDCLRACQEQIEAA 264 (306)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777766544444433
No 33
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=50.52 E-value=57 Score=26.82 Aligned_cols=87 Identities=9% Similarity=-0.084 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHcCCCchHH----HHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccC-----cccccccccc
Q 027897 73 SIQQYIDRIFKYGACSPSCF----VIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDA-----FFNNAYYARV 143 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~----ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~-----~~sN~~~akv 143 (217)
+-.+|+.++++..+.+.+.. -.|..+++--.. ........+.-+-.+|+.+|.+.++-. ..+....+++
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~--d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~ 227 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALV--DPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI 227 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHT--STTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh--CcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH
Confidence 57899999999888877652 234444443322 222334567888899999999988621 1222233345
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 027897 144 GGVSTAEMNRMEVKFLFS 161 (217)
Q Consensus 144 ~gvs~~eLN~LE~~FL~l 161 (217)
.|++..++...=..+..+
T Consensus 228 t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 228 LGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHH
Confidence 677777776555444443
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=48.09 E-value=63 Score=26.80 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHcCCCchHHH----HHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhccc----Cccccc----cc
Q 027897 73 SIQQYIDRIFKYGACSPSCFV----IAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDD----AFFNNA----YY 140 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~~~~i----lALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD----~~~sN~----~~ 140 (217)
+-.+|+.++++..+.+....- .|..+++.... ........+.-+-.+|+.+|.+.++- ...+.. ..
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~--d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l 233 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCAT--DVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFL 233 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHT--STHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHh--hhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHH
Confidence 578999999999888876531 23344442221 22223456778888889999887742 122222 22
Q ss_pred ccccCCCHHHHHHHHHHHHHh
Q 027897 141 ARVGGVSTAEMNRMEVKFLFS 161 (217)
Q Consensus 141 akv~gvs~~eLN~LE~~FL~l 161 (217)
+++.|++..++..-=.+++.+
T Consensus 234 ~~~~~v~~~~l~~c~~~i~~l 254 (271)
T 2w96_A 234 SRVIKCDPDCLRACQEQIEAL 254 (271)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHH
Confidence 334666666665554444443
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=20.03 E-value=3.7e+02 Score=22.19 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHhhhhhcccCcccccccc
Q 027897 73 SIQQYIDRIFKYGACSP-----------SCFVIAHIYMDRFLQKTDGHLTSLNVHRLLITSVMVAAKFIDDAFFNNAYYA 141 (217)
Q Consensus 73 si~~yl~rI~~~~~~s~-----------~~~ilALiYidRl~~~~~~~i~~~n~hRL~ltal~lAsKf~dD~~~sN~~~a 141 (217)
+-.+|+.++++..+++. ..+..+..+++--..... .....+.-+-.+|+.+|.. .+.|.
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~--~l~~~PS~iAaAai~la~~--------~~~l~ 219 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVD--CLEFPYGILAASALYHFSS--------SELMQ 219 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGG--GGGSCHHHHHHHHHHHTSC--------HHHHH
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhh--hhcCCHHHHHHHHHHHHHC--------hHHHH
Confidence 56788888877655432 223333333333222111 2234556677777777752 56678
Q ss_pred cccCCCHHHHHHHHHHHH
Q 027897 142 RVGGVSTAEMNRMEVKFL 159 (217)
Q Consensus 142 kv~gvs~~eLN~LE~~FL 159 (217)
++.|++..++..--.+++
T Consensus 220 ~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 220 KVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHSCCCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 888988888766544443
Done!