Query 027898
Match_columns 217
No_of_seqs 122 out of 333
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1962 B-cell receptor-associ 100.0 7.2E-47 1.6E-51 318.3 25.0 203 1-208 1-212 (216)
2 PF05529 Bap31: B-cell recepto 100.0 1.3E-42 2.9E-47 290.4 21.5 178 2-192 5-192 (192)
3 COG5374 Uncharacterized conser 100.0 7E-33 1.5E-37 225.5 21.0 171 2-207 5-185 (192)
4 KOG1962 B-cell receptor-associ 98.6 5.2E-06 1.1E-10 70.7 16.0 169 41-216 41-216 (216)
5 COG4372 Uncharacterized protei 96.8 0.031 6.7E-07 51.7 12.7 116 91-206 52-168 (499)
6 PF02183 HALZ: Homeobox associ 96.3 0.011 2.4E-07 38.4 5.0 34 174-207 4-37 (45)
7 PF11559 ADIP: Afadin- and alp 96.1 0.28 6.1E-06 39.2 13.3 90 103-206 36-125 (151)
8 PRK11637 AmiB activator; Provi 95.4 0.61 1.3E-05 43.5 14.6 54 148-201 76-129 (428)
9 KOG0995 Centromere-associated 95.3 2.7 6E-05 40.8 18.6 55 154-208 294-351 (581)
10 PF00038 Filament: Intermediat 94.5 1.8 3.9E-05 38.3 14.4 31 103-133 9-39 (312)
11 PRK09039 hypothetical protein; 94.3 4.1 9E-05 37.2 18.6 33 92-124 61-93 (343)
12 COG5185 HEC1 Protein involved 93.3 8.1 0.00017 37.0 18.5 55 154-208 330-387 (622)
13 PRK11637 AmiB activator; Provi 93.0 2.4 5.2E-05 39.5 13.0 52 153-204 74-125 (428)
14 PF08614 ATG16: Autophagy prot 92.9 0.86 1.9E-05 38.1 8.9 61 144-204 120-180 (194)
15 PF06810 Phage_GP20: Phage min 92.5 1 2.2E-05 36.6 8.6 49 152-200 25-76 (155)
16 PF04156 IncA: IncA protein; 92.5 5.2 0.00011 32.8 20.1 51 152-202 135-185 (191)
17 PRK10884 SH3 domain-containing 92.3 3.3 7.1E-05 35.3 11.7 27 178-204 142-168 (206)
18 TIGR03185 DNA_S_dndD DNA sulfu 91.5 3.3 7.1E-05 40.8 12.3 82 105-198 391-472 (650)
19 PF11932 DUF3450: Protein of u 91.0 9.3 0.0002 33.0 13.5 44 148-191 57-100 (251)
20 TIGR03752 conj_TIGR03752 integ 90.8 4 8.7E-05 38.9 11.6 79 107-206 61-140 (472)
21 PRK10884 SH3 domain-containing 90.2 2.1 4.6E-05 36.4 8.5 14 112-125 93-106 (206)
22 COG3883 Uncharacterized protei 90.2 6.4 0.00014 34.9 11.6 15 85-99 2-16 (265)
23 PF14662 CCDC155: Coiled-coil 90.1 7.9 0.00017 32.7 11.6 15 117-131 41-55 (193)
24 COG4942 Membrane-bound metallo 89.5 6.5 0.00014 37.0 11.7 93 89-198 18-110 (420)
25 PF14662 CCDC155: Coiled-coil 89.3 12 0.00025 31.7 12.0 22 184-205 118-139 (193)
26 COG3879 Uncharacterized protei 88.9 9.8 0.00021 33.4 11.7 21 89-109 11-31 (247)
27 PF08614 ATG16: Autophagy prot 88.4 4.7 0.0001 33.6 9.3 48 150-204 119-166 (194)
28 PRK15422 septal ring assembly 88.3 7.9 0.00017 28.1 9.5 53 148-207 19-71 (79)
29 PF13851 GAS: Growth-arrest sp 88.3 10 0.00022 32.0 11.3 8 92-99 17-24 (201)
30 PF05266 DUF724: Protein of un 88.3 14 0.00031 31.0 12.0 30 163-192 154-183 (190)
31 KOG2264 Exostosin EXT1L [Signa 88.2 3.9 8.4E-05 40.1 9.4 48 152-199 105-152 (907)
32 PF05266 DUF724: Protein of un 87.9 15 0.00032 30.9 14.9 11 55-65 51-61 (190)
33 PF04111 APG6: Autophagy prote 87.6 12 0.00025 33.9 11.9 15 190-204 114-128 (314)
34 PF11559 ADIP: Afadin- and alp 87.3 13 0.00028 29.5 12.8 52 154-205 94-149 (151)
35 PF08317 Spc7: Spc7 kinetochor 87.0 22 0.00048 32.1 13.3 49 156-204 211-259 (325)
36 PF11544 Spc42p: Spindle pole 86.9 5.1 0.00011 28.9 7.3 47 152-205 3-49 (76)
37 PF10473 CENP-F_leu_zip: Leuci 86.8 15 0.00032 29.5 12.4 28 105-132 24-51 (140)
38 COG4026 Uncharacterized protei 86.6 7 0.00015 34.0 9.3 50 150-206 152-201 (290)
39 KOG0977 Nuclear envelope prote 86.6 19 0.0004 35.2 13.1 30 102-131 46-75 (546)
40 KOG0946 ER-Golgi vesicle-tethe 86.5 24 0.00051 36.1 14.0 53 154-206 657-709 (970)
41 PF10234 Cluap1: Clusterin-ass 86.2 9.6 0.00021 33.8 10.2 51 150-200 186-236 (267)
42 PRK12704 phosphodiesterase; Pr 86.1 25 0.00054 34.0 13.9 33 165-197 107-139 (520)
43 PF07888 CALCOCO1: Calcium bin 85.8 6.2 0.00013 38.4 9.5 55 150-204 160-214 (546)
44 KOG0999 Microtubule-associated 85.7 5.2 0.00011 39.0 8.8 58 150-207 11-75 (772)
45 PF08317 Spc7: Spc7 kinetochor 85.7 12 0.00026 33.7 11.0 55 148-202 210-264 (325)
46 PF09726 Macoilin: Transmembra 85.4 15 0.00032 36.9 12.3 33 151-183 549-581 (697)
47 PF00038 Filament: Intermediat 85.2 18 0.00039 31.9 11.8 25 103-127 16-40 (312)
48 PF09738 DUF2051: Double stran 85.0 21 0.00046 32.2 12.1 86 111-203 83-168 (302)
49 PF04111 APG6: Autophagy prote 84.9 9.4 0.0002 34.5 9.8 40 153-192 63-102 (314)
50 PHA02562 46 endonuclease subun 84.5 18 0.00038 34.5 12.1 38 154-191 337-374 (562)
51 PF14235 DUF4337: Domain of un 84.3 8.6 0.00019 31.3 8.5 45 157-201 69-113 (157)
52 PF05483 SCP-1: Synaptonemal c 83.9 13 0.00028 37.2 10.7 39 169-207 588-626 (786)
53 PF04156 IncA: IncA protein; 83.9 22 0.00048 29.0 12.7 56 152-207 128-183 (191)
54 PF07106 TBPIP: Tat binding pr 83.8 7.3 0.00016 31.6 8.0 57 150-206 75-133 (169)
55 COG5374 Uncharacterized conser 83.6 3.1 6.6E-05 34.8 5.6 16 155-170 137-152 (192)
56 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.0 20 0.00044 28.0 11.9 32 176-207 99-130 (132)
57 COG4768 Uncharacterized protei 83.0 19 0.00042 28.7 9.6 29 178-206 41-69 (139)
58 PF13094 CENP-Q: CENP-Q, a CEN 82.9 16 0.00035 29.3 9.6 50 154-203 41-91 (160)
59 COG3883 Uncharacterized protei 82.3 24 0.00051 31.4 10.9 40 148-187 53-92 (265)
60 PF06156 DUF972: Protein of un 82.3 8.4 0.00018 29.4 7.2 48 154-208 8-55 (107)
61 PF07061 Swi5: Swi5; InterPro 82.2 7.2 0.00016 28.5 6.5 49 152-203 5-53 (83)
62 PF07888 CALCOCO1: Calcium bin 82.2 16 0.00035 35.6 10.6 34 154-187 206-239 (546)
63 PRK13169 DNA replication intia 82.1 11 0.00023 29.1 7.7 48 154-208 8-55 (110)
64 PF06810 Phage_GP20: Phage min 82.0 13 0.00027 30.2 8.6 48 152-199 18-68 (155)
65 PF03954 Lectin_N: Hepatic lec 81.9 9.6 0.00021 30.5 7.6 73 92-170 38-110 (138)
66 PF07407 Seadorna_VP6: Seadorn 81.8 5.6 0.00012 36.4 6.9 54 140-193 32-87 (420)
67 PF14584 DUF4446: Protein of u 81.6 24 0.00052 28.6 10.0 34 92-125 2-36 (151)
68 PF10481 CENP-F_N: Cenp-F N-te 81.2 29 0.00064 31.0 11.0 56 154-209 81-136 (307)
69 PHA02562 46 endonuclease subun 81.2 17 0.00037 34.6 10.6 52 152-203 342-393 (562)
70 PF12777 MT: Microtubule-bindi 81.1 3.8 8.3E-05 37.2 5.8 33 91-123 192-225 (344)
71 PF07407 Seadorna_VP6: Seadorn 80.9 10 0.00022 34.7 8.3 71 145-216 30-102 (420)
72 KOG0963 Transcription factor/C 80.7 48 0.001 32.8 13.3 110 93-203 230-358 (629)
73 PF06005 DUF904: Protein of un 80.7 18 0.00038 25.7 8.6 22 182-203 39-60 (72)
74 PF04849 HAP1_N: HAP1 N-termin 80.2 31 0.00068 31.2 11.2 99 109-207 164-266 (306)
75 PF12761 End3: Actin cytoskele 79.8 35 0.00077 28.9 10.7 85 108-202 99-194 (195)
76 COG4467 Regulator of replicati 79.8 10 0.00022 29.2 6.7 46 155-207 9-54 (114)
77 COG0711 AtpF F0F1-type ATP syn 79.8 30 0.00064 28.0 10.1 26 93-118 13-38 (161)
78 PF10473 CENP-F_leu_zip: Leuci 79.3 31 0.00067 27.7 10.9 35 154-188 52-86 (140)
79 PF07106 TBPIP: Tat binding pr 78.7 12 0.00026 30.3 7.5 62 142-203 74-137 (169)
80 COG1579 Zn-ribbon protein, pos 78.4 15 0.00032 32.1 8.3 52 154-205 31-82 (239)
81 PF09403 FadA: Adhesion protei 78.4 31 0.00067 27.2 12.1 21 105-125 20-40 (126)
82 PRK14139 heat shock protein Gr 78.3 12 0.00025 31.5 7.4 41 147-187 32-72 (185)
83 PF12329 TMF_DNA_bd: TATA elem 78.1 22 0.00047 25.2 8.8 18 178-195 50-67 (74)
84 COG2433 Uncharacterized conser 77.7 43 0.00093 33.1 11.9 27 101-127 374-400 (652)
85 KOG0243 Kinesin-like protein [ 77.7 34 0.00074 35.8 11.8 99 109-207 408-515 (1041)
86 PF10392 COG5: Golgi transport 77.3 31 0.00066 26.9 9.2 36 169-204 66-105 (132)
87 PF10186 Atg14: UV radiation r 77.3 47 0.001 28.6 12.2 13 182-194 119-131 (302)
88 COG3074 Uncharacterized protei 77.2 23 0.0005 25.2 7.4 50 150-206 21-70 (79)
89 PF11932 DUF3450: Protein of u 77.0 48 0.001 28.6 13.5 49 152-200 47-95 (251)
90 PF15188 CCDC-167: Coiled-coil 77.0 13 0.00028 27.4 6.4 25 175-199 43-67 (85)
91 PF13851 GAS: Growth-arrest sp 77.0 44 0.00095 28.2 11.6 41 159-199 91-131 (201)
92 PF07254 DUF1434: Protein of u 76.9 9.6 0.00021 30.3 6.2 48 5-69 16-63 (132)
93 TIGR02894 DNA_bind_RsfA transc 76.5 18 0.00039 29.7 7.8 46 156-201 106-151 (161)
94 PRK15422 septal ring assembly 76.4 27 0.00058 25.4 7.9 33 174-206 24-63 (79)
95 KOG0933 Structural maintenance 76.2 37 0.00081 35.5 11.4 32 92-123 720-759 (1174)
96 PRK14162 heat shock protein Gr 75.5 9.5 0.00021 32.2 6.2 44 144-187 36-79 (194)
97 KOG0250 DNA repair protein RAD 75.4 44 0.00095 35.1 11.8 36 156-191 353-388 (1074)
98 PF00170 bZIP_1: bZIP transcri 75.4 17 0.00036 24.6 6.4 19 178-196 43-61 (64)
99 TIGR03545 conserved hypothetic 75.2 21 0.00046 34.8 9.3 37 151-187 216-252 (555)
100 PF00261 Tropomyosin: Tropomyo 74.7 54 0.0012 28.1 12.4 55 152-206 174-228 (237)
101 PF04136 Sec34: Sec34-like fam 74.5 32 0.0007 27.8 8.9 55 155-209 22-76 (157)
102 PRK00888 ftsB cell division pr 74.3 22 0.00048 26.9 7.4 12 178-189 51-62 (105)
103 PF12325 TMF_TATA_bd: TATA ele 74.3 39 0.00085 26.3 12.2 51 152-206 49-106 (120)
104 PF12718 Tropomyosin_1: Tropom 74.1 31 0.00068 27.5 8.6 26 148-173 36-61 (143)
105 KOG0971 Microtubule-associated 74.0 78 0.0017 33.0 12.9 46 163-208 398-443 (1243)
106 PF12325 TMF_TATA_bd: TATA ele 73.9 27 0.00059 27.2 7.9 23 178-200 64-86 (120)
107 PF10146 zf-C4H2: Zinc finger- 73.8 59 0.0013 28.2 14.0 51 154-204 53-103 (230)
108 PF02403 Seryl_tRNA_N: Seryl-t 73.8 26 0.00056 26.0 7.7 23 103-125 27-49 (108)
109 PF05615 THOC7: Tho complex su 73.6 41 0.00089 26.3 9.9 10 190-199 116-125 (139)
110 PF10146 zf-C4H2: Zinc finger- 73.6 60 0.0013 28.1 11.2 56 152-207 44-99 (230)
111 PHA02047 phage lambda Rz1-like 73.4 16 0.00035 27.5 6.2 46 154-199 34-79 (101)
112 TIGR03185 DNA_S_dndD DNA sulfu 73.2 69 0.0015 31.6 12.5 49 154-202 421-469 (650)
113 PF09730 BicD: Microtubule-ass 73.2 53 0.0011 33.2 11.6 31 176-206 105-145 (717)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.1 42 0.00091 26.1 9.1 30 177-206 61-90 (132)
115 PRK14148 heat shock protein Gr 72.8 12 0.00025 31.8 6.0 39 148-186 41-79 (195)
116 PRK14158 heat shock protein Gr 72.8 13 0.00028 31.5 6.3 40 148-187 41-80 (194)
117 PRK14145 heat shock protein Gr 72.7 20 0.00044 30.3 7.5 41 146-186 44-84 (196)
118 smart00503 SynN Syntaxin N-ter 72.6 36 0.00078 25.1 12.6 30 177-206 84-113 (117)
119 PF04799 Fzo_mitofusin: fzo-li 72.1 21 0.00045 29.6 7.2 43 152-198 125-167 (171)
120 TIGR02894 DNA_bind_RsfA transc 71.6 44 0.00096 27.5 8.9 24 178-201 114-137 (161)
121 PF03962 Mnd1: Mnd1 family; I 71.6 41 0.0009 28.0 9.1 108 98-206 55-166 (188)
122 PF05377 FlaC_arch: Flagella a 71.5 29 0.00062 23.5 7.0 28 178-205 24-51 (55)
123 PF10205 KLRAQ: Predicted coil 71.2 43 0.00094 25.5 11.1 47 153-199 25-71 (102)
124 PRK09039 hypothetical protein; 70.1 88 0.0019 28.5 11.7 56 152-207 121-176 (343)
125 PRK14143 heat shock protein Gr 70.0 26 0.00057 30.5 7.8 39 148-186 68-106 (238)
126 PF12718 Tropomyosin_1: Tropom 70.0 54 0.0012 26.1 11.9 53 154-206 87-139 (143)
127 PRK14158 heat shock protein Gr 69.9 28 0.0006 29.5 7.7 19 152-170 38-56 (194)
128 PF10211 Ax_dynein_light: Axon 69.8 64 0.0014 26.9 14.3 57 150-206 130-187 (189)
129 PF10234 Cluap1: Clusterin-ass 69.7 31 0.00067 30.6 8.2 51 156-206 185-235 (267)
130 PF10224 DUF2205: Predicted co 69.5 38 0.00082 24.6 7.3 44 156-206 18-61 (80)
131 PRK02224 chromosome segregatio 69.4 52 0.0011 33.4 10.9 10 188-197 418-427 (880)
132 PF06103 DUF948: Bacterial pro 69.4 39 0.00086 24.3 7.9 20 178-197 43-62 (90)
133 TIGR02680 conserved hypothetic 69.1 56 0.0012 35.3 11.5 45 151-195 280-324 (1353)
134 PRK04863 mukB cell division pr 68.7 60 0.0013 35.6 11.6 25 173-197 388-412 (1486)
135 KOG0996 Structural maintenance 68.7 36 0.00078 36.1 9.5 52 155-206 915-966 (1293)
136 KOG0963 Transcription factor/C 68.5 80 0.0017 31.3 11.4 40 147-187 317-356 (629)
137 KOG1760 Molecular chaperone Pr 68.1 58 0.0013 25.7 9.3 30 104-133 22-51 (131)
138 KOG0933 Structural maintenance 68.0 98 0.0021 32.6 12.2 45 154-198 406-450 (1174)
139 KOG0995 Centromere-associated 67.7 1.2E+02 0.0026 29.8 12.3 38 156-193 334-371 (581)
140 smart00338 BRLZ basic region l 67.7 28 0.00061 23.6 6.1 19 178-196 43-61 (65)
141 PF02403 Seryl_tRNA_N: Seryl-t 67.4 48 0.001 24.5 9.0 16 112-127 43-58 (108)
142 PF04859 DUF641: Plant protein 67.3 61 0.0013 25.7 8.9 29 156-191 96-124 (131)
143 PF03962 Mnd1: Mnd1 family; I 67.3 73 0.0016 26.6 11.8 89 105-194 69-161 (188)
144 PRK13922 rod shape-determining 67.1 85 0.0018 27.3 12.0 18 190-207 94-111 (276)
145 KOG0996 Structural maintenance 67.1 81 0.0018 33.6 11.6 53 155-207 543-595 (1293)
146 PRK13729 conjugal transfer pil 67.0 30 0.00066 33.2 8.1 29 178-206 93-121 (475)
147 PF10805 DUF2730: Protein of u 66.8 53 0.0012 24.8 11.6 28 92-119 15-42 (106)
148 PF04728 LPP: Lipoprotein leuc 66.7 38 0.00081 23.0 7.5 32 152-183 8-39 (56)
149 PF06120 Phage_HK97_TLTM: Tail 66.4 41 0.00088 30.4 8.4 23 178-200 84-106 (301)
150 PF07200 Mod_r: Modifier of ru 66.0 63 0.0014 25.4 9.4 39 154-199 55-93 (150)
151 PF08112 ATP-synt_E_2: ATP syn 65.9 23 0.00049 23.8 5.0 32 153-197 10-41 (56)
152 PRK14148 heat shock protein Gr 65.2 29 0.00062 29.4 6.9 29 178-206 50-78 (195)
153 PRK13428 F0F1 ATP synthase sub 65.1 1.3E+02 0.0027 28.5 12.3 27 92-118 7-33 (445)
154 PF06008 Laminin_I: Laminin Do 64.9 93 0.002 26.9 12.6 53 152-204 57-109 (264)
155 KOG0250 DNA repair protein RAD 64.8 87 0.0019 33.0 11.3 29 154-182 323-351 (1074)
156 PRK14161 heat shock protein Gr 64.4 20 0.00043 29.8 5.7 38 150-187 22-59 (178)
157 TIGR03319 YmdA_YtgF conserved 64.3 1.4E+02 0.0031 28.8 12.9 35 166-200 95-129 (514)
158 PF07200 Mod_r: Modifier of ru 64.1 62 0.0013 25.4 8.4 32 175-206 55-86 (150)
159 PHA03011 hypothetical protein; 63.7 15 0.00033 28.0 4.4 26 178-203 60-85 (120)
160 PF09789 DUF2353: Uncharacteri 63.5 46 0.00099 30.3 8.2 29 175-203 133-161 (319)
161 PF12329 TMF_DNA_bd: TATA elem 63.4 50 0.0011 23.3 9.0 8 180-187 38-45 (74)
162 PF00170 bZIP_1: bZIP transcri 63.2 44 0.00095 22.5 6.4 27 178-204 36-62 (64)
163 PF14197 Cep57_CLD_2: Centroso 63.1 50 0.0011 23.2 9.0 33 174-206 32-64 (69)
164 KOG0994 Extracellular matrix g 63.1 66 0.0014 34.5 10.0 30 172-201 1264-1293(1758)
165 PRK14155 heat shock protein Gr 62.6 27 0.00058 29.9 6.3 41 150-190 16-56 (208)
166 PF05701 WEMBL: Weak chloropla 62.5 1.5E+02 0.0033 28.6 12.8 53 154-206 281-333 (522)
167 PRK14147 heat shock protein Gr 62.5 21 0.00046 29.5 5.5 38 150-187 21-58 (172)
168 TIGR01005 eps_transp_fam exopo 62.2 1.3E+02 0.0028 30.1 12.0 29 174-202 375-403 (754)
169 PF09728 Taxilin: Myosin-like 62.1 39 0.00085 30.4 7.6 47 154-200 22-68 (309)
170 PF00261 Tropomyosin: Tropomyo 62.1 1E+02 0.0022 26.4 11.1 50 155-204 170-219 (237)
171 PF08647 BRE1: BRE1 E3 ubiquit 61.9 62 0.0014 23.9 10.5 53 150-202 27-79 (96)
172 PF04420 CHD5: CHD5-like prote 61.8 49 0.0011 26.8 7.5 23 108-130 36-58 (161)
173 PF06156 DUF972: Protein of un 61.4 32 0.0007 26.2 6.0 20 147-166 36-55 (107)
174 PRK05431 seryl-tRNA synthetase 61.3 44 0.00094 31.4 8.1 22 104-125 27-48 (425)
175 PRK14161 heat shock protein Gr 61.3 26 0.00057 29.1 5.9 33 174-206 25-57 (178)
176 KOG4403 Cell surface glycoprot 61.3 1.6E+02 0.0034 28.3 11.9 27 105-131 245-271 (575)
177 PF15254 CCDC14: Coiled-coil d 61.1 1.2E+02 0.0027 31.0 11.3 38 169-206 516-553 (861)
178 PRK13729 conjugal transfer pil 61.1 28 0.00061 33.4 6.7 20 165-184 101-120 (475)
179 PF05529 Bap31: B-cell recepto 61.1 92 0.002 25.6 19.1 29 175-203 161-189 (192)
180 PRK14140 heat shock protein Gr 61.0 27 0.00058 29.5 5.9 40 148-187 38-77 (191)
181 KOG0249 LAR-interacting protei 61.0 1.6E+02 0.0035 30.0 12.0 32 175-206 223-254 (916)
182 PF13805 Pil1: Eisosome compon 61.0 1.2E+02 0.0027 27.0 11.8 42 155-196 166-209 (271)
183 PF02183 HALZ: Homeobox associ 61.0 42 0.0009 21.6 5.6 32 175-206 12-43 (45)
184 KOG0161 Myosin class II heavy 60.9 1.1E+02 0.0023 34.6 11.7 41 156-196 1099-1139(1930)
185 PF04728 LPP: Lipoprotein leuc 60.2 51 0.0011 22.4 6.7 43 149-191 12-54 (56)
186 PRK04778 septation ring format 60.1 1.1E+02 0.0023 29.8 10.8 30 176-205 363-392 (569)
187 PRK14151 heat shock protein Gr 59.9 57 0.0012 27.1 7.7 40 151-190 24-63 (176)
188 PF05546 She9_MDM33: She9 / Md 59.9 52 0.0011 28.2 7.5 49 149-197 34-82 (207)
189 PRK02224 chromosome segregatio 59.9 1.5E+02 0.0033 30.0 12.2 8 179-186 631-638 (880)
190 COG3167 PilO Tfp pilus assembl 59.7 33 0.00072 29.1 6.2 40 154-197 56-95 (211)
191 KOG4674 Uncharacterized conser 58.7 1.2E+02 0.0025 34.0 11.4 78 93-184 677-754 (1822)
192 PRK14160 heat shock protein Gr 58.7 34 0.00073 29.3 6.2 27 178-204 71-97 (211)
193 PF10779 XhlA: Haemolysin XhlA 58.5 59 0.0013 22.6 7.1 42 153-194 5-46 (71)
194 PF06160 EzrA: Septation ring 58.5 1.8E+02 0.004 28.2 14.2 53 155-207 102-154 (560)
195 TIGR02449 conserved hypothetic 58.4 61 0.0013 22.6 7.6 31 178-208 24-54 (65)
196 COG5415 Predicted integral mem 58.3 96 0.0021 26.8 8.8 33 88-120 70-111 (251)
197 PF06295 DUF1043: Protein of u 58.1 71 0.0015 24.9 7.6 52 154-208 25-76 (128)
198 COG2841 Uncharacterized protei 58.1 16 0.00035 25.9 3.4 30 179-208 7-36 (72)
199 TIGR02209 ftsL_broad cell divi 57.7 33 0.00072 24.2 5.3 16 178-194 48-63 (85)
200 PHA01750 hypothetical protein 57.7 64 0.0014 22.7 7.0 27 178-204 45-71 (75)
201 PRK14160 heat shock protein Gr 57.3 48 0.001 28.4 6.9 33 152-184 66-98 (211)
202 KOG3990 Uncharacterized conser 57.2 48 0.001 29.4 6.9 34 148-181 226-259 (305)
203 PF11262 Tho2: Transcription f 57.2 39 0.00085 30.1 6.7 29 178-206 56-84 (298)
204 PRK14163 heat shock protein Gr 57.2 31 0.00068 29.6 5.8 38 149-186 42-79 (214)
205 PF06005 DUF904: Protein of un 57.1 67 0.0015 22.7 9.4 15 150-164 21-35 (72)
206 cd07605 I-BAR_IMD Inverse (I)- 57.0 1.1E+02 0.0024 26.3 9.2 50 157-206 115-169 (223)
207 PRK14154 heat shock protein Gr 56.8 67 0.0015 27.5 7.7 40 150-189 55-94 (208)
208 PF12777 MT: Microtubule-bindi 56.2 38 0.00083 30.7 6.6 43 162-204 229-271 (344)
209 KOG0946 ER-Golgi vesicle-tethe 56.0 1E+02 0.0022 31.7 9.8 57 152-208 811-867 (970)
210 PRK15396 murein lipoprotein; P 56.0 75 0.0016 22.9 6.8 14 177-190 48-61 (78)
211 PRK12704 phosphodiesterase; Pr 55.9 2E+02 0.0044 27.9 13.3 40 163-202 98-137 (520)
212 KOG1003 Actin filament-coating 55.9 1.3E+02 0.0028 25.7 10.0 47 154-200 137-183 (205)
213 cd00179 SynN Syntaxin N-termin 55.8 94 0.002 24.0 13.0 26 179-204 85-110 (151)
214 PRK11281 hypothetical protein; 55.5 1.5E+02 0.0032 31.7 11.4 54 154-207 128-181 (1113)
215 PF15397 DUF4618: Domain of un 55.3 1.5E+02 0.0033 26.2 12.5 19 152-170 86-104 (258)
216 PF13600 DUF4140: N-terminal d 55.2 25 0.00054 26.0 4.4 35 153-187 69-103 (104)
217 COG4026 Uncharacterized protei 55.0 76 0.0016 27.8 7.7 52 112-170 128-179 (290)
218 PRK14153 heat shock protein Gr 54.9 36 0.00078 28.8 5.7 37 150-186 36-72 (194)
219 KOG4593 Mitotic checkpoint pro 54.7 2.4E+02 0.0051 28.6 11.9 57 151-207 472-528 (716)
220 PF07139 DUF1387: Protein of u 54.6 1.3E+02 0.0027 27.3 9.4 88 95-187 190-285 (302)
221 PF03961 DUF342: Protein of un 54.4 76 0.0016 29.8 8.5 30 178-207 378-407 (451)
222 PRK09841 cryptic autophosphory 54.2 1.5E+02 0.0032 29.8 10.9 29 100-128 269-297 (726)
223 KOG4052 Uncharacterized conser 54.1 17 0.00038 30.0 3.5 22 176-197 146-167 (190)
224 KOG0018 Structural maintenance 53.7 1.7E+02 0.0037 31.0 11.2 29 178-206 306-334 (1141)
225 PF10168 Nup88: Nuclear pore c 53.7 82 0.0018 31.8 8.9 34 173-206 584-617 (717)
226 KOG0977 Nuclear envelope prote 53.6 41 0.00088 32.9 6.5 58 150-207 320-381 (546)
227 TIGR01061 parC_Gpos DNA topois 53.1 1.9E+02 0.004 29.4 11.4 23 92-115 371-393 (738)
228 PF04977 DivIC: Septum formati 53.1 46 0.001 22.8 5.3 10 178-187 41-50 (80)
229 PF13870 DUF4201: Domain of un 53.0 1.2E+02 0.0027 24.5 11.3 54 153-206 104-162 (177)
230 PRK11519 tyrosine kinase; Prov 52.5 1.5E+02 0.0032 29.8 10.5 32 173-204 368-399 (719)
231 PRK14153 heat shock protein Gr 52.3 47 0.001 28.1 6.0 29 178-206 43-71 (194)
232 PLN02678 seryl-tRNA synthetase 52.2 67 0.0015 30.6 7.7 25 178-202 81-105 (448)
233 PF03961 DUF342: Protein of un 51.3 1.1E+02 0.0024 28.8 9.0 24 183-206 376-399 (451)
234 KOG0981 DNA topoisomerase I [R 51.2 38 0.00083 33.4 5.9 64 144-207 633-701 (759)
235 PF14523 Syntaxin_2: Syntaxin- 51.0 92 0.002 22.5 11.5 29 178-206 67-95 (102)
236 PF03839 Sec62: Translocation 50.7 51 0.0011 28.5 6.1 13 13-25 120-133 (224)
237 COG5393 Predicted membrane pro 50.6 92 0.002 24.5 6.9 18 50-67 91-108 (131)
238 PRK04863 mukB cell division pr 50.5 2E+02 0.0043 31.7 11.7 40 155-194 356-395 (1486)
239 PRK05560 DNA gyrase subunit A; 50.4 2.3E+02 0.0051 29.0 11.7 23 92-115 374-396 (805)
240 PF10212 TTKRSYEDQ: Predicted 50.1 2.5E+02 0.0055 27.3 12.1 21 112-132 434-454 (518)
241 PRK06568 F0F1 ATP synthase sub 50.1 1.4E+02 0.003 24.3 10.2 24 92-115 10-33 (154)
242 PF05667 DUF812: Protein of un 50.1 1.1E+02 0.0024 30.2 9.0 52 154-205 328-379 (594)
243 TIGR02449 conserved hypothetic 49.8 36 0.00078 23.8 4.1 31 177-207 2-32 (65)
244 PF14916 CCDC92: Coiled-coil d 49.7 32 0.0007 23.7 3.8 34 175-208 10-47 (60)
245 PF15619 Lebercilin: Ciliary p 49.5 1.6E+02 0.0034 24.8 11.7 38 157-194 121-158 (194)
246 PRK14144 heat shock protein Gr 49.5 50 0.0011 28.1 5.7 37 150-186 48-84 (199)
247 PRK13553 fumarate reductase cy 49.4 1.9E+02 0.0041 25.6 11.3 75 29-112 59-147 (258)
248 PF06645 SPC12: Microsomal sig 49.4 15 0.00031 26.3 2.2 26 3-28 35-62 (76)
249 PF13815 Dzip-like_N: Iguana/D 49.4 53 0.0011 25.1 5.5 9 26-34 11-19 (118)
250 PF06459 RR_TM4-6: Ryanodine R 49.3 21 0.00045 31.8 3.6 27 81-110 164-190 (274)
251 smart00338 BRLZ basic region l 49.2 80 0.0017 21.2 6.6 28 178-205 36-63 (65)
252 PF10481 CENP-F_N: Cenp-F N-te 49.1 85 0.0018 28.2 7.2 34 164-197 42-75 (307)
253 PF07989 Microtub_assoc: Micro 48.9 51 0.0011 23.5 4.9 19 152-170 48-66 (75)
254 TIGR03545 conserved hypothetic 48.6 87 0.0019 30.7 8.0 32 169-200 213-244 (555)
255 TIGR02338 gimC_beta prefoldin, 48.4 78 0.0017 23.8 6.2 17 178-194 84-100 (110)
256 PRK15396 murein lipoprotein; P 48.4 1E+02 0.0022 22.3 7.4 41 152-192 30-70 (78)
257 KOG0982 Centrosomal protein Nu 48.2 2.6E+02 0.0055 26.8 11.2 55 144-198 308-362 (502)
258 PF10498 IFT57: Intra-flagella 48.2 2.3E+02 0.0049 26.2 15.2 54 154-207 266-319 (359)
259 PF05600 DUF773: Protein of un 47.7 1.6E+02 0.0034 28.5 9.5 33 154-186 460-492 (507)
260 PF15070 GOLGA2L5: Putative go 47.7 1.6E+02 0.0034 29.3 9.7 38 169-206 154-191 (617)
261 PRK09173 F0F1 ATP synthase sub 47.7 1.4E+02 0.0031 23.7 10.2 14 93-106 8-21 (159)
262 TIGR00634 recN DNA repair prot 47.4 1.6E+02 0.0034 28.6 9.7 36 169-204 340-375 (563)
263 PF10174 Cast: RIM-binding pro 47.0 2.8E+02 0.0061 28.4 11.5 53 155-207 115-167 (775)
264 COG4839 FtsL Protein required 47.0 1.4E+02 0.003 23.4 8.7 36 154-197 67-102 (120)
265 PF12709 Kinetocho_Slk19: Cent 46.8 1.2E+02 0.0025 22.5 8.7 27 182-208 49-75 (87)
266 PRK00888 ftsB cell division pr 46.7 1E+02 0.0022 23.2 6.6 17 178-194 44-60 (105)
267 PF05546 She9_MDM33: She9 / Md 46.3 1E+02 0.0022 26.4 7.2 47 154-207 32-78 (207)
268 TIGR03007 pepcterm_ChnLen poly 46.3 2.6E+02 0.0056 26.3 12.2 29 174-202 354-382 (498)
269 PRK14141 heat shock protein Gr 46.2 51 0.0011 28.2 5.4 35 152-186 36-70 (209)
270 PF10716 NdhL: NADH dehydrogen 45.8 94 0.002 22.7 5.8 33 3-35 14-52 (81)
271 KOG0978 E3 ubiquitin ligase in 45.8 3.4E+02 0.0073 27.5 12.6 15 193-207 605-619 (698)
272 TIGR03007 pepcterm_ChnLen poly 45.7 2.6E+02 0.0057 26.2 11.9 21 186-206 359-379 (498)
273 COG1842 PspA Phage shock prote 45.5 2E+02 0.0043 24.8 10.3 46 159-204 29-74 (225)
274 PLN02678 seryl-tRNA synthetase 45.5 1.5E+02 0.0032 28.3 8.9 22 104-125 32-53 (448)
275 PRK14146 heat shock protein Gr 45.3 60 0.0013 27.8 5.7 36 151-186 58-93 (215)
276 TIGR03319 YmdA_YtgF conserved 45.3 2.9E+02 0.0064 26.7 13.6 36 162-197 98-133 (514)
277 PF01025 GrpE: GrpE; InterPro 45.3 29 0.00062 27.7 3.6 31 154-184 18-48 (165)
278 PRK10636 putative ABC transpor 45.2 94 0.002 30.6 7.8 29 178-206 601-629 (638)
279 PF09728 Taxilin: Myosin-like 45.2 2.3E+02 0.005 25.5 11.2 34 174-207 113-146 (309)
280 PF13805 Pil1: Eisosome compon 44.9 2.3E+02 0.0049 25.3 9.4 28 163-190 167-194 (271)
281 KOG1029 Endocytic adaptor prot 44.8 3.8E+02 0.0082 27.8 12.1 37 158-194 546-582 (1118)
282 PF15070 GOLGA2L5: Putative go 44.8 2.1E+02 0.0046 28.5 10.1 53 152-204 207-259 (617)
283 PF05325 DUF730: Protein of un 44.6 1.2E+02 0.0026 23.0 6.5 41 154-194 78-118 (122)
284 COG4942 Membrane-bound metallo 44.5 2.8E+02 0.0061 26.3 11.9 73 105-184 38-110 (420)
285 PRK05431 seryl-tRNA synthetase 44.4 1.5E+02 0.0033 27.8 8.8 19 179-197 70-88 (425)
286 KOG4571 Activating transcripti 44.4 65 0.0014 29.0 5.9 18 178-195 265-282 (294)
287 PF07334 IFP_35_N: Interferon- 44.3 50 0.0011 23.8 4.2 18 153-170 6-23 (76)
288 PF10174 Cast: RIM-binding pro 43.9 3.8E+02 0.0082 27.5 12.5 10 178-187 395-404 (775)
289 TIGR00606 rad50 rad50. This fa 43.8 4.5E+02 0.0098 28.4 13.3 46 152-197 886-931 (1311)
290 cd07655 F-BAR_PACSIN The F-BAR 43.8 2.2E+02 0.0047 24.7 10.7 45 153-197 167-211 (258)
291 cd00632 Prefoldin_beta Prefold 43.6 89 0.0019 23.2 5.9 23 178-200 80-102 (105)
292 PRK14156 heat shock protein Gr 43.6 62 0.0013 26.9 5.4 36 152-187 32-67 (177)
293 TIGR01005 eps_transp_fam exopo 43.6 3.5E+02 0.0076 27.1 12.3 21 105-125 288-308 (754)
294 KOG2927 Membrane component of 43.2 43 0.00093 31.0 4.7 20 5-25 192-212 (372)
295 PF10805 DUF2730: Protein of u 43.1 1.4E+02 0.0031 22.4 7.5 31 166-196 70-100 (106)
296 PF01166 TSC22: TSC-22/dip/bun 43.1 50 0.0011 22.6 3.8 27 178-204 17-43 (59)
297 PF05701 WEMBL: Weak chloropla 43.1 2.2E+02 0.0048 27.4 9.9 38 155-192 373-410 (522)
298 COG0497 RecN ATPase involved i 42.9 1.2E+02 0.0026 29.8 7.9 58 144-205 315-372 (557)
299 PF04420 CHD5: CHD5-like prote 42.9 53 0.0011 26.6 4.8 20 187-206 71-90 (161)
300 PRK05771 V-type ATP synthase s 42.7 1.2E+02 0.0025 30.0 8.1 47 154-200 215-262 (646)
301 PF05911 DUF869: Plant protein 42.6 3.9E+02 0.0085 27.4 13.9 36 92-127 534-569 (769)
302 COG1422 Predicted membrane pro 42.5 1.4E+02 0.003 25.5 7.3 34 98-131 51-84 (201)
303 KOG4403 Cell surface glycoprot 42.2 3.2E+02 0.007 26.3 10.5 29 178-208 293-321 (575)
304 cd00632 Prefoldin_beta Prefold 42.1 1.4E+02 0.0031 22.1 6.9 9 186-194 81-89 (105)
305 PF09730 BicD: Microtubule-ass 41.7 1.5E+02 0.0034 30.0 8.7 48 159-206 67-114 (717)
306 PF00430 ATP-synt_B: ATP synth 41.7 1.5E+02 0.0032 22.2 8.8 19 94-112 7-25 (132)
307 KOG0976 Rho/Rac1-interacting s 41.5 1.9E+02 0.0041 30.0 9.1 18 187-204 181-198 (1265)
308 PF06637 PV-1: PV-1 protein (P 41.4 1.8E+02 0.004 27.3 8.4 66 112-192 322-387 (442)
309 PF12958 DUF3847: Protein of u 41.4 74 0.0016 23.4 4.9 32 157-188 4-35 (86)
310 PLN02320 seryl-tRNA synthetase 41.3 1.1E+02 0.0025 29.6 7.5 21 178-198 140-160 (502)
311 PF12128 DUF3584: Protein of u 41.2 3E+02 0.0065 29.5 11.2 16 178-193 688-703 (1201)
312 PRK14143 heat shock protein Gr 41.1 85 0.0018 27.4 6.1 29 178-206 77-105 (238)
313 KOG4196 bZIP transcription fac 40.9 1.3E+02 0.0029 23.9 6.5 26 178-203 91-116 (135)
314 KOG4196 bZIP transcription fac 40.9 1.1E+02 0.0024 24.3 6.1 31 158-188 85-115 (135)
315 cd07647 F-BAR_PSTPIP The F-BAR 40.8 2.3E+02 0.005 24.1 9.1 30 176-205 114-143 (239)
316 TIGR00309 V_ATPase_subD H(+)-t 40.7 1.4E+02 0.0031 25.1 7.3 46 154-206 9-54 (209)
317 PHA02669 hypothetical protein; 40.7 79 0.0017 26.3 5.4 40 91-130 14-53 (210)
318 TIGR00414 serS seryl-tRNA synt 40.7 1.9E+02 0.0041 27.1 8.7 22 104-125 29-50 (418)
319 PRK14157 heat shock protein Gr 40.6 73 0.0016 27.6 5.5 36 152-187 82-117 (227)
320 KOG1029 Endocytic adaptor prot 40.4 1.3E+02 0.0029 30.9 7.8 57 150-206 447-503 (1118)
321 PRK00373 V-type ATP synthase s 40.1 1.5E+02 0.0033 24.8 7.4 46 154-206 11-56 (204)
322 KOG4643 Uncharacterized coiled 40.1 4.9E+02 0.011 27.8 12.0 46 156-201 490-535 (1195)
323 PF12072 DUF3552: Domain of un 40.0 2.2E+02 0.0048 23.7 13.1 20 178-197 116-135 (201)
324 PF15066 CAGE1: Cancer-associa 39.7 3.6E+02 0.0078 26.1 11.4 46 154-199 390-435 (527)
325 PF11471 Sugarporin_N: Maltopo 39.6 74 0.0016 21.7 4.4 28 152-179 30-57 (60)
326 COG3352 FlaC Putative archaeal 39.5 2.1E+02 0.0046 23.4 8.3 54 153-206 78-132 (157)
327 KOG0999 Microtubule-associated 39.4 3.4E+02 0.0073 27.0 10.1 23 177-199 179-204 (772)
328 KOG0994 Extracellular matrix g 39.4 3E+02 0.0065 29.9 10.3 55 152-206 1624-1678(1758)
329 PRK00106 hypothetical protein; 39.2 3.6E+02 0.0079 26.4 10.6 35 163-197 120-154 (535)
330 PHA00024 IX minor coat protein 39.2 40 0.00087 20.4 2.6 16 89-104 9-24 (33)
331 PF04012 PspA_IM30: PspA/IM30 39.1 2.3E+02 0.0049 23.6 13.9 95 103-199 49-143 (221)
332 PRK14750 kdpF potassium-transp 39.0 50 0.0011 19.3 2.9 21 92-112 5-25 (29)
333 PF14282 FlxA: FlxA-like prote 38.9 1.7E+02 0.0036 22.0 7.9 52 147-198 19-74 (106)
334 PF09789 DUF2353: Uncharacteri 38.6 3.1E+02 0.0067 25.0 12.4 66 142-207 128-207 (319)
335 TIGR03752 conj_TIGR03752 integ 38.3 3.4E+02 0.0073 26.2 10.0 28 104-131 65-92 (472)
336 TIGR00414 serS seryl-tRNA synt 38.2 2.1E+02 0.0045 26.8 8.6 9 112-120 30-38 (418)
337 PF12128 DUF3584: Protein of u 38.2 5.3E+02 0.012 27.6 12.6 48 154-201 469-516 (1201)
338 COG0576 GrpE Molecular chapero 38.1 93 0.002 26.1 5.7 33 153-185 42-74 (193)
339 PF01920 Prefoldin_2: Prefoldi 38.1 1.4E+02 0.0029 21.6 6.1 18 178-195 79-96 (106)
340 TIGR00293 prefoldin, archaeal 38.0 1.3E+02 0.0029 22.7 6.2 29 178-206 96-124 (126)
341 PF09726 Macoilin: Transmembra 38.0 2.8E+02 0.006 28.1 9.8 36 152-187 543-578 (697)
342 TIGR01843 type_I_hlyD type I s 38.0 3E+02 0.0066 24.7 12.1 31 161-191 203-233 (423)
343 COG3872 Predicted metal-depend 37.7 1.6E+02 0.0034 26.4 7.1 18 54-71 164-181 (318)
344 PRK09343 prefoldin subunit bet 37.6 1.9E+02 0.0041 22.2 7.1 30 175-204 85-114 (121)
345 PRK03947 prefoldin subunit alp 37.6 1.9E+02 0.0042 22.4 7.3 40 156-202 96-135 (140)
346 PF07989 Microtub_assoc: Micro 37.6 1.2E+02 0.0026 21.5 5.4 19 152-170 41-59 (75)
347 PRK10869 recombination and rep 37.6 1.2E+02 0.0026 29.5 7.2 36 169-204 335-370 (553)
348 PF05377 FlaC_arch: Flagella a 37.5 1.3E+02 0.0028 20.3 6.0 17 178-194 17-33 (55)
349 PF07334 IFP_35_N: Interferon- 37.3 51 0.0011 23.8 3.4 23 147-169 7-29 (76)
350 cd07657 F-BAR_Fes_Fer The F-BA 37.2 2.7E+02 0.0059 24.0 8.7 35 174-208 118-152 (237)
351 PF04350 PilO: Pilus assembly 37.1 28 0.00061 26.8 2.3 14 178-191 26-39 (144)
352 PRK14162 heat shock protein Gr 37.1 1.1E+02 0.0023 25.9 5.9 27 178-204 49-75 (194)
353 PF05483 SCP-1: Synaptonemal c 37.0 4E+02 0.0087 27.1 10.5 49 158-206 503-551 (786)
354 PF11241 DUF3043: Protein of u 36.9 1.9E+02 0.004 24.0 7.1 26 44-69 104-129 (170)
355 PRK14154 heat shock protein Gr 36.9 91 0.002 26.7 5.5 12 155-166 53-64 (208)
356 PF05911 DUF869: Plant protein 36.8 4.2E+02 0.009 27.2 10.9 24 89-112 535-558 (769)
357 PRK04406 hypothetical protein; 36.4 1.6E+02 0.0034 21.0 7.4 28 160-187 24-51 (75)
358 PRK14159 heat shock protein Gr 36.4 92 0.002 25.9 5.3 35 153-187 29-63 (176)
359 cd07651 F-BAR_PombeCdc15_like 36.4 2.6E+02 0.0057 23.6 8.4 67 149-215 88-154 (236)
360 PRK02119 hypothetical protein; 36.4 1.5E+02 0.0033 20.8 7.3 29 159-187 21-49 (73)
361 PF02388 FemAB: FemAB family; 36.2 1.8E+02 0.0039 27.0 7.9 47 152-202 247-293 (406)
362 TIGR00219 mreC rod shape-deter 36.1 1E+02 0.0022 27.4 5.9 18 191-208 93-110 (283)
363 PF15294 Leu_zip: Leucine zipp 35.8 1.3E+02 0.0027 27.0 6.4 42 147-188 132-173 (278)
364 PRK09973 putative outer membra 35.7 1.8E+02 0.0039 21.4 6.7 27 152-178 29-55 (85)
365 smart00806 AIP3 Actin interact 35.5 98 0.0021 29.3 5.9 11 189-199 286-296 (426)
366 TIGR00998 8a0101 efflux pump m 35.5 1.9E+02 0.0041 25.4 7.6 13 115-127 83-95 (334)
367 PRK09413 IS2 repressor TnpA; R 35.4 82 0.0018 24.0 4.6 25 153-184 77-101 (121)
368 PRK00106 hypothetical protein; 35.3 2.6E+02 0.0056 27.3 8.9 40 163-202 113-152 (535)
369 PF01102 Glycophorin_A: Glycop 35.3 36 0.00077 26.7 2.5 16 92-107 76-91 (122)
370 PF15066 CAGE1: Cancer-associa 35.3 4.2E+02 0.0092 25.6 11.0 44 154-197 460-507 (527)
371 TIGR01554 major_cap_HK97 phage 35.2 2.2E+02 0.0049 25.8 8.2 16 117-132 4-19 (378)
372 COG4372 Uncharacterized protei 35.2 4E+02 0.0087 25.3 11.8 48 154-201 123-170 (499)
373 cd00890 Prefoldin Prefoldin is 35.1 1.6E+02 0.0034 22.0 6.2 22 104-125 22-43 (129)
374 PF06936 Selenoprotein_S: Sele 35.0 2.7E+02 0.0059 23.4 8.4 20 92-111 39-58 (190)
375 PF10625 UspB: Universal stres 35.0 1E+02 0.0022 23.5 4.9 33 93-125 2-34 (107)
376 KOG4643 Uncharacterized coiled 34.8 1.6E+02 0.0036 31.0 7.7 51 145-202 175-225 (1195)
377 COG3524 KpsE Capsule polysacch 34.7 1.7E+02 0.0037 26.8 7.0 24 184-207 283-306 (372)
378 KOG0288 WD40 repeat protein Ti 34.7 4.1E+02 0.0089 25.3 12.0 21 105-125 27-47 (459)
379 PF14193 DUF4315: Domain of un 34.7 1.5E+02 0.0032 21.7 5.5 11 178-188 28-38 (83)
380 TIGR01554 major_cap_HK97 phage 34.6 2.6E+02 0.0057 25.4 8.6 12 114-125 8-19 (378)
381 KOG1937 Uncharacterized conser 34.4 2.2E+02 0.0049 27.4 8.0 28 178-205 491-518 (521)
382 PF14817 HAUS5: HAUS augmin-li 34.2 2.5E+02 0.0053 28.1 8.7 55 143-197 82-142 (632)
383 PLN03229 acetyl-coenzyme A car 33.9 3.6E+02 0.0077 27.6 9.7 14 180-193 509-522 (762)
384 COG5185 HEC1 Protein involved 33.7 4.6E+02 0.01 25.6 11.1 56 148-203 338-396 (622)
385 PRK09174 F0F1 ATP synthase sub 33.7 2.9E+02 0.0063 23.3 11.0 16 169-184 150-165 (204)
386 cd07675 F-BAR_FNBP1L The F-BAR 33.7 3.3E+02 0.0072 23.9 10.6 45 153-197 161-206 (252)
387 PRK02195 V-type ATP synthase s 33.6 2.2E+02 0.0047 24.0 7.3 46 154-206 10-55 (201)
388 COG1422 Predicted membrane pro 33.6 3E+02 0.0064 23.5 7.9 20 113-132 73-92 (201)
389 PRK04406 hypothetical protein; 33.5 1.8E+02 0.0038 20.7 8.2 50 152-208 9-58 (75)
390 PRK06568 F0F1 ATP synthase sub 33.4 1.3E+02 0.0027 24.5 5.6 19 168-186 63-81 (154)
391 PF05008 V-SNARE: Vesicle tran 33.4 1.6E+02 0.0035 20.3 6.4 45 154-198 32-77 (79)
392 PF01920 Prefoldin_2: Prefoldi 33.4 1.4E+02 0.0029 21.6 5.4 16 155-170 70-85 (106)
393 KOG3215 Uncharacterized conser 33.2 2.6E+02 0.0057 24.0 7.6 20 168-187 103-122 (222)
394 PRK14149 heat shock protein Gr 33.2 1.1E+02 0.0024 25.8 5.3 34 153-186 42-75 (191)
395 PRK14140 heat shock protein Gr 33.1 1.4E+02 0.003 25.1 6.0 20 184-203 53-72 (191)
396 PRK04960 universal stress prot 33.1 1.2E+02 0.0025 23.4 4.9 33 93-125 2-34 (111)
397 PF13815 Dzip-like_N: Iguana/D 33.1 2E+02 0.0043 21.9 6.4 30 154-183 87-116 (118)
398 PF15188 CCDC-167: Coiled-coil 33.1 1.8E+02 0.0038 21.4 5.8 22 110-131 3-24 (85)
399 PF15294 Leu_zip: Leucine zipp 33.0 1.4E+02 0.0031 26.6 6.3 29 178-206 142-170 (278)
400 PF11853 DUF3373: Protein of u 33.0 42 0.00091 32.4 3.1 9 155-163 32-40 (489)
401 PRK09343 prefoldin subunit bet 33.0 2.3E+02 0.0049 21.8 10.5 41 158-198 75-115 (121)
402 PF06818 Fez1: Fez1; InterPro 32.9 3.1E+02 0.0067 23.4 9.3 20 178-197 83-102 (202)
403 KOG2391 Vacuolar sorting prote 32.9 3E+02 0.0065 25.5 8.4 20 178-197 256-275 (365)
404 PF15190 DUF4583: Domain of un 32.7 51 0.0011 25.9 3.0 25 1-25 69-94 (128)
405 KOG3433 Protein involved in me 32.7 2.9E+02 0.0064 23.4 7.6 9 115-123 84-92 (203)
406 PF12761 End3: Actin cytoskele 32.6 1.8E+02 0.0039 24.7 6.5 37 152-188 101-141 (195)
407 PRK14145 heat shock protein Gr 32.5 2.7E+02 0.0059 23.6 7.6 29 178-206 55-83 (196)
408 KOG2189 Vacuolar H+-ATPase V0 32.4 5.4E+02 0.012 26.5 10.7 44 154-198 92-135 (829)
409 TIGR01063 gyrA DNA gyrase, A s 32.2 5.7E+02 0.012 26.2 11.7 23 92-115 371-393 (800)
410 PRK14147 heat shock protein Gr 32.2 1.1E+02 0.0024 25.2 5.2 20 183-202 33-52 (172)
411 PF03915 AIP3: Actin interacti 32.2 2.8E+02 0.006 26.3 8.4 17 152-168 218-234 (424)
412 COG1842 PspA Phage shock prote 32.1 3.3E+02 0.0072 23.4 12.8 89 103-200 50-138 (225)
413 PF11853 DUF3373: Protein of u 32.1 49 0.0011 31.9 3.4 28 155-190 26-53 (489)
414 KOG3647 Predicted coiled-coil 32.1 3E+02 0.0066 24.8 8.0 66 141-206 113-178 (338)
415 PRK04778 septation ring format 31.9 4.9E+02 0.011 25.3 14.8 53 155-207 106-158 (569)
416 PF14817 HAUS5: HAUS augmin-li 31.9 1.8E+02 0.004 29.0 7.4 24 178-201 103-126 (632)
417 PRK14139 heat shock protein Gr 31.9 1.4E+02 0.0031 24.9 5.8 11 154-164 32-42 (185)
418 PF04102 SlyX: SlyX; InterPro 31.9 1.7E+02 0.0038 20.1 7.4 29 178-206 21-49 (69)
419 PF11221 Med21: Subunit 21 of 31.8 1.4E+02 0.0031 23.6 5.6 34 154-187 104-137 (144)
420 PF09738 DUF2051: Double stran 31.6 3.9E+02 0.0085 24.1 11.8 55 152-206 110-164 (302)
421 PRK13460 F0F1 ATP synthase sub 31.6 2.8E+02 0.006 22.4 10.3 23 93-115 23-45 (173)
422 PRK13169 DNA replication intia 31.5 1.8E+02 0.004 22.3 5.9 21 145-165 34-54 (110)
423 PF13514 AAA_27: AAA domain 31.5 6.5E+02 0.014 26.6 12.7 11 117-127 859-869 (1111)
424 cd00584 Prefoldin_alpha Prefol 31.4 2E+02 0.0044 21.8 6.3 22 105-126 23-44 (129)
425 PRK03947 prefoldin subunit alp 31.3 2.3E+02 0.0049 21.9 6.7 19 152-170 99-117 (140)
426 KOG4005 Transcription factor X 31.2 3.6E+02 0.0079 23.8 8.2 39 156-194 92-130 (292)
427 PRK11281 hypothetical protein; 31.2 5.6E+02 0.012 27.5 11.1 55 152-206 197-251 (1113)
428 KOG0962 DNA repair protein RAD 31.1 7.3E+02 0.016 27.1 12.1 32 174-205 260-291 (1294)
429 KOG3595 Dyneins, heavy chain [ 31.1 2.3E+02 0.0051 30.9 8.6 16 42-57 832-847 (1395)
430 KOG4673 Transcription factor T 31.0 3.1E+02 0.0067 28.0 8.6 53 152-204 709-761 (961)
431 PF10828 DUF2570: Protein of u 31.0 2.3E+02 0.005 21.3 12.1 15 92-106 4-18 (110)
432 PF14282 FlxA: FlxA-like prote 30.7 2.3E+02 0.005 21.2 7.6 55 152-206 17-75 (106)
433 COG1382 GimC Prefoldin, chaper 30.7 2.6E+02 0.0057 21.8 12.1 30 174-203 83-112 (119)
434 PLN02320 seryl-tRNA synthetase 30.6 3.2E+02 0.007 26.5 8.7 8 156-163 139-146 (502)
435 TIGR01010 BexC_CtrB_KpsE polys 30.5 4E+02 0.0088 23.9 10.2 23 178-200 281-303 (362)
436 PF06698 DUF1192: Protein of u 30.5 1.6E+02 0.0035 20.1 4.8 19 152-170 26-44 (59)
437 PF10883 DUF2681: Protein of u 30.4 2.2E+02 0.0048 20.9 8.9 16 153-168 36-51 (87)
438 cd07647 F-BAR_PSTPIP The F-BAR 30.3 3.4E+02 0.0075 23.1 9.3 40 153-192 152-191 (239)
439 PRK14164 heat shock protein Gr 30.1 1.2E+02 0.0025 26.2 5.1 33 154-186 77-109 (218)
440 PRK13454 F0F1 ATP synthase sub 29.8 2.2E+02 0.0047 23.4 6.6 42 156-197 53-94 (181)
441 PF10458 Val_tRNA-synt_C: Valy 29.8 1.8E+02 0.0039 19.7 8.1 17 152-168 9-25 (66)
442 PF10883 DUF2681: Protein of u 29.6 2.3E+02 0.005 20.9 9.4 15 156-170 32-46 (87)
443 PF07412 Geminin: Geminin; In 29.5 1.2E+02 0.0027 25.8 5.0 17 154-170 125-141 (200)
444 PF07795 DUF1635: Protein of u 29.5 3.7E+02 0.008 23.2 8.2 32 156-187 28-59 (214)
445 PRK02119 hypothetical protein; 29.4 2E+02 0.0044 20.2 7.8 49 152-207 7-55 (73)
446 PRK09973 putative outer membra 29.3 2.3E+02 0.0051 20.8 7.0 38 155-192 25-62 (85)
447 PF07111 HCR: Alpha helical co 29.2 4E+02 0.0086 27.1 9.1 66 140-205 162-227 (739)
448 KOG2264 Exostosin EXT1L [Signa 29.2 3E+02 0.0065 27.5 8.1 34 145-178 105-138 (907)
449 PRK09174 F0F1 ATP synthase sub 29.1 2.3E+02 0.005 23.9 6.7 19 166-184 110-128 (204)
450 PRK10636 putative ABC transpor 29.1 2.2E+02 0.0047 28.1 7.5 10 195-204 604-613 (638)
451 PF09766 FimP: Fms-interacting 29.1 2.1E+02 0.0046 26.2 6.9 34 158-191 119-152 (355)
452 KOG0978 E3 ubiquitin ligase in 29.0 6.3E+02 0.014 25.7 11.3 51 153-203 572-622 (698)
453 PRK07353 F0F1 ATP synthase sub 28.9 2.2E+02 0.0048 21.8 6.2 16 168-183 64-79 (140)
454 PRK00409 recombination and DNA 28.7 3.1E+02 0.0067 28.0 8.6 7 19-25 356-362 (782)
455 cd07675 F-BAR_FNBP1L The F-BAR 28.6 4E+02 0.0088 23.3 8.8 40 169-208 114-153 (252)
456 PRK14156 heat shock protein Gr 28.5 1.4E+02 0.0029 24.9 5.1 29 178-206 37-65 (177)
457 KOG0804 Cytoplasmic Zn-finger 28.4 5.4E+02 0.012 24.8 12.7 15 113-127 348-362 (493)
458 COG4477 EzrA Negative regulato 28.4 3E+02 0.0065 27.1 7.9 53 155-207 105-157 (570)
459 PF05600 DUF773: Protein of un 28.3 1.6E+02 0.0034 28.6 6.1 42 150-198 127-168 (507)
460 PF10018 Med4: Vitamin-D-recep 28.3 3.4E+02 0.0073 22.3 8.7 22 153-174 35-56 (188)
461 PF05103 DivIVA: DivIVA protei 28.3 50 0.0011 25.1 2.4 29 99-127 26-54 (131)
462 PF15079 DUF4546: Domain of un 28.2 2.4E+02 0.0053 23.5 6.4 32 152-194 52-84 (205)
463 PF06148 COG2: COG (conserved 28.1 1.6E+02 0.0035 22.7 5.2 43 163-205 71-113 (133)
464 PF11658 DUF3260: Protein of u 28.0 70 0.0015 31.0 3.7 38 12-60 25-62 (518)
465 KOG0614 cGMP-dependent protein 28.0 2.3E+02 0.0049 28.2 7.0 51 153-203 23-73 (732)
466 PRK14144 heat shock protein Gr 28.0 1.6E+02 0.0036 24.9 5.6 28 178-205 55-82 (199)
467 PF04350 PilO: Pilus assembly 27.8 51 0.0011 25.3 2.3 8 191-198 52-59 (144)
468 KOG1937 Uncharacterized conser 27.7 5.6E+02 0.012 24.8 9.4 33 155-187 346-378 (521)
469 TIGR03017 EpsF chain length de 27.7 4.8E+02 0.011 23.9 11.6 88 105-202 282-369 (444)
470 KOG1510 RNA polymerase II holo 27.5 3.1E+02 0.0067 22.0 6.6 42 154-195 91-132 (139)
471 KOG4797 Transcriptional regula 27.5 1.7E+02 0.0036 22.7 4.9 32 172-203 64-95 (123)
472 PRK14150 heat shock protein Gr 27.4 1.8E+02 0.0039 24.4 5.7 45 141-185 28-76 (193)
473 COG1340 Uncharacterized archae 27.3 4.7E+02 0.01 23.6 12.6 97 105-205 134-230 (294)
474 TIGR03321 alt_F1F0_F0_B altern 27.3 4E+02 0.0086 22.8 12.2 107 93-207 12-123 (246)
475 COG2194 Predicted membrane-ass 27.2 4.7E+02 0.01 25.7 9.2 95 2-107 43-139 (555)
476 PF15290 Syntaphilin: Golgi-lo 27.2 3.3E+02 0.0072 24.5 7.5 49 156-206 70-118 (305)
477 COG1792 MreC Cell shape-determ 27.1 2.3E+02 0.0049 25.2 6.6 51 154-215 66-117 (284)
478 PF12072 DUF3552: Domain of un 27.0 3.7E+02 0.008 22.4 13.7 114 93-206 5-137 (201)
479 KOG1003 Actin filament-coating 26.9 4E+02 0.0087 22.7 8.3 88 112-206 109-196 (205)
480 PRK14473 F0F1 ATP synthase sub 26.9 3.2E+02 0.007 21.7 12.6 85 93-200 15-100 (164)
481 PF05531 NPV_P10: Nucleopolyhe 26.7 2.5E+02 0.0053 20.2 6.4 56 147-206 11-66 (75)
482 KOG4674 Uncharacterized conser 26.5 1E+03 0.022 27.2 13.7 108 99-206 952-1063(1822)
483 PF05667 DUF812: Protein of un 26.3 6.5E+02 0.014 25.0 10.4 96 105-204 408-503 (594)
484 PF02646 RmuC: RmuC family; I 26.3 4.7E+02 0.01 23.3 8.5 61 143-206 2-65 (304)
485 PRK00736 hypothetical protein; 26.2 2.3E+02 0.0049 19.6 7.5 52 151-209 2-53 (68)
486 PF05010 TACC: Transforming ac 26.1 4.1E+02 0.009 22.6 11.9 84 110-206 123-206 (207)
487 PRK10929 putative mechanosensi 26.0 8.5E+02 0.018 26.2 12.1 96 105-206 130-232 (1109)
488 PF04568 IATP: Mitochondrial A 25.9 1.9E+02 0.0041 21.8 5.0 30 153-185 71-100 (100)
489 COG0711 AtpF F0F1-type ATP syn 25.9 2.5E+02 0.0054 22.6 6.1 39 159-197 31-69 (161)
490 PF07028 DUF1319: Protein of u 25.8 3.4E+02 0.0073 21.5 6.6 43 149-191 41-83 (126)
491 cd07651 F-BAR_PombeCdc15_like 25.7 4.1E+02 0.0089 22.4 10.4 82 103-197 112-193 (236)
492 KOG3335 Predicted coiled-coil 25.6 1.6E+02 0.0034 24.7 4.8 58 151-215 96-160 (181)
493 KOG0243 Kinesin-like protein [ 25.5 8.4E+02 0.018 26.0 11.0 103 107-209 457-559 (1041)
494 PRK14127 cell division protein 25.5 87 0.0019 24.1 3.2 66 139-205 36-101 (109)
495 cd07646 I-BAR_IMD_IRSp53 Inver 25.4 4.6E+02 0.0099 22.9 8.3 66 142-208 102-174 (232)
496 KOG0964 Structural maintenance 25.4 8.6E+02 0.019 26.0 12.7 105 100-204 344-468 (1200)
497 KOG0239 Kinesin (KAR3 subfamil 25.3 6.5E+02 0.014 25.3 10.0 100 107-206 184-286 (670)
498 KOG0804 Cytoplasmic Zn-finger 25.3 6.1E+02 0.013 24.5 9.2 91 117-207 337-428 (493)
499 PF08654 DASH_Dad2: DASH compl 25.1 3E+02 0.0066 20.7 6.3 41 159-203 2-42 (103)
500 PRK13455 F0F1 ATP synthase sub 25.0 2.6E+02 0.0055 22.8 6.2 39 159-197 52-90 (184)
No 1
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=100.00 E-value=7.2e-47 Score=318.28 Aligned_cols=203 Identities=31% Similarity=0.444 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhccchhH-HHHH-HHHHHh-hhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-CC
Q 027898 1 MIQLLYTVIFSQMALIMTLLFKTPLR-KLVI-MSLDRV-KRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLE-T-GA 75 (217)
Q Consensus 1 ~~~lvf~~L~~Em~~~llLvlPlP~R-~~~~-~~l~~~-~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~-~-~~ 75 (217)
||++||++||+||+++++||+|+|.| |+.+ ...... ..+.+.+++.+++++++++|+|||+++++|...+.. . +.
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 79999999999999999999999864 4433 222233 333368889999999999999999999999876432 1 23
Q ss_pred CCh--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhh
Q 027898 76 LNP--TDQILMSKHMLE--ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIAT 151 (217)
Q Consensus 76 ~~~--~~~~~~~~~l~~--~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
++| ..+++|..|+.| .|||||+|||||||+|+|+++++++.++++ +.++++++.+.+..+..+ ++..++++
T Consensus 81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~----~~~~~~~~ 155 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSS----KLEEENDK 155 (216)
T ss_pred cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhccc----chhhhHHH
Confidence 334 455677655553 699999999999999999999999999996 555555554443221111 13445566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
..++.++|+++++++++++++++++.++|+||+++++.|||||+|||++||+++++.
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 788999999999999999999999999999999999999999999999999999984
No 2
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-42 Score=290.37 Aligned_cols=178 Identities=34% Similarity=0.507 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--CCC
Q 027898 2 IQLLYTVIFSQMALIMTLLFKTP--LRKLVIMSLD-RVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLET--GAL 76 (217)
Q Consensus 2 ~~lvf~~L~~Em~~~llLvlPlP--~R~~~~~~l~-~~~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~--~~~ 76 (217)
|++||++|++||+++++||+|+| .|+.++++++ .+..+++++++++++++++++|+|||+++++|+.+.++. ++.
T Consensus 5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~ 84 (192)
T PF05529_consen 5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 79999999999999999999996 4888888887 556777999999999999999999999999998876532 222
Q ss_pred C---hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhh
Q 027898 77 N---PTDQILMSKHMLE--ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIAT 151 (217)
Q Consensus 77 ~---~~~~~~~~~~l~~--~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
+ +.++++|++|++| +|||||+|||++||+|+++++++++.++++.+++.+|++++++.... .
T Consensus 85 ~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~-------~------ 151 (192)
T PF05529_consen 85 NPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEK-------L------ 151 (192)
T ss_pred CccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------h------
Confidence 2 4678899999998 89999999999999999999999999999999999998887642110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
.+++.+++++|+++.+++|+++++|.++||||++|+++|||
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 22344455555666666666677777999999999999998
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7e-33 Score=225.53 Aligned_cols=171 Identities=16% Similarity=0.242 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHh-hhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--CCC
Q 027898 2 IQLLYTVIFSQMALIMTLLFKTPL--RKLVIMSLDRV-KRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLET--GAL 76 (217)
Q Consensus 2 ~~lvf~~L~~Em~~~llLvlPlP~--R~~~~~~l~~~-~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~--~~~ 76 (217)
|++||.+|++||++|++|+||+|+ ||++++.++.+ +.+++++++++++++++++|+|||+|+++++.+.+.. ..+
T Consensus 5 ~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~n 84 (192)
T COG5374 5 YTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASIN 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcccccc
Confidence 789999999999999999999997 68888888744 5566899999999999999999999999998876422 122
Q ss_pred C---hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhh
Q 027898 77 N---PTDQILMSKHMLE--ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIAT 151 (217)
Q Consensus 77 ~---~~~~~~~~~~l~~--~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
| .+.++++|+||+| ||||||+|||++|+.|+++++.+++..++...+ +.| +
T Consensus 85 ~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~~--------------k~D----------~ 140 (192)
T COG5374 85 NYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKGG--------------KID----------K 140 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------------chh----------h
Confidence 2 2557899999998 899999999999999999999999987764331 111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
...+...+++++..+++ +.+.|+|+-+++.++|| +++++.++.+.
T Consensus 141 ~eA~~t~lk~~~~~~~~-------~le~Lqkn~~~~~k~~d----~~ne~~~~v~~ 185 (192)
T COG5374 141 MEADSTDLKARLRKAQI-------LLEGLQKNQEELFKLLD----KYNELREQVQK 185 (192)
T ss_pred hhcchHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHH----HHhHHHHHHHH
Confidence 22334445555544444 44888888777666665 45666666554
No 4
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=98.56 E-value=5.2e-06 Score=70.75 Aligned_cols=169 Identities=24% Similarity=0.322 Sum_probs=128.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC-ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 41 GPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGAL-NPTDQILMSKHMLE-ASLMGFLLFLSLMMDRLHHYIRELRLLR 118 (217)
Q Consensus 41 ~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~~~~-~~~~~~~~~~~l~~-~YLtGF~LFL~lvI~r~~~li~~l~~l~ 118 (217)
++.+.++++++++++++--+-.+++++......+.. ||.++..++.++.. +|.+++-+|++=+.=-+.-+|.++..+-
T Consensus 41 ~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll 120 (216)
T KOG1962|consen 41 APQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLL 120 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999987777776 47899989988877 7999999999866666667777777777
Q ss_pred HHHHHHHHh--hhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 027898 119 KAMEAAKKQ--TRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 119 ~~~~a~~kQ--a~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~ 196 (217)
..+..++.+ ++.... ..++....-+.+.+|..+++.+++.++.++++-+.+.+...++.+.+.+--+++.+
T Consensus 121 ~~l~~l~~~~~~~~~~~-------~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 121 RELATLRANEKAMKENE-------ALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHhhHHHHHHHH-------HHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 666665533 222211 11111111122567788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc-c--ccCCCcC
Q 027898 197 DNQHLRNQLESI-D--HSDSKKD 216 (217)
Q Consensus 197 e~~~l~~~~~~~-~--~~~~KK~ 216 (217)
||++|-++-+.- + .+++||+
T Consensus 194 EydrLlee~~~Lq~~i~~~~~k~ 216 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQIESGGKKK 216 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCCCC
Confidence 999997553322 2 5667664
No 5
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.79 E-value=0.031 Score=51.66 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 027898 91 ASLMGFLLFLSLMMDR-LHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKE 169 (217)
Q Consensus 91 ~YLtGF~LFL~lvI~r-~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~ke 169 (217)
|-||..+|-..|+++| +.+=|.++......+++++.+.+.+++.+..-..|...-..|...-++|-+..+.++...+++
T Consensus 52 ~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n 131 (499)
T COG4372 52 MLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131 (499)
T ss_pred chhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778877777776 456678888888888888877766654321111111222223344556777788889999999
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 170 ANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 170 l~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+|..|..-+.+|+.+++.+.-.|.+++.++..+.+
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888877654443
No 6
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.33 E-value=0.011 Score=38.35 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+.|.++||.+.+.|..+||+|..|++.|+.++..
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988874
No 7
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.10 E-value=0.28 Score=39.20 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKK 182 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk 182 (217)
||+-++.+|.....-....+.+..+ ......++..+...++.|+.+++.++.++..++.+..++++
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~--------------~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDK--------------LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555544444443322 22233344556777888888888888888888888888888
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 183 QSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 183 Qae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+...+..---...+|.++++..++
T Consensus 102 ~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 102 QLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777777777776655
No 8
>PRK11637 AmiB activator; Provisional
Probab=95.44 E-value=0.61 Score=43.55 Aligned_cols=54 Identities=6% Similarity=-0.024 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
++..+..+++.+..+|...+.+|...+.+++.+.++.+.++++.+...+.....
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555556665555566666666666666665555554443
No 9
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=2.7 Score=40.77 Aligned_cols=55 Identities=31% Similarity=0.389 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF---LLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l---~~EYdrL~~e~~~l~~~~~~~ 208 (217)
++++.|+.|++.++.++++-+.+.+.||+|.++. -+++.|..-|.++++..++..
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999987 578888888888888877754
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.48 E-value=1.8 Score=38.25 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFED 133 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~ 133 (217)
.=.|+.++|.+.-.+++....+..+......
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 4467777777777777777776666555443
No 11
>PRK09039 hypothetical protein; Validated
Probab=94.30 E-value=4.1 Score=37.18 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAA 124 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~ 124 (217)
-|+.-+=-|.+=-.+.-.+=.++..+++.++++
T Consensus 61 qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 61 QIAELADLLSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555554443
No 12
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.26 E-value=8.1 Score=37.04 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF---LLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l---~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+.+++|+.+++.++.+|+.-+++.+.|++|..+. ..+|.....|.++|-..|++.
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i 387 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI 387 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999998875 456666667777777766654
No 13
>PRK11637 AmiB activator; Provisional
Probab=93.05 E-value=2.4 Score=39.55 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
..+++.+..+|+..+.++...+.+++.+..+.+.++.+-+.+.++.+..+..
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444333
No 14
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.92 E-value=0.86 Score=38.07 Aligned_cols=61 Identities=30% Similarity=0.359 Sum_probs=45.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 144 GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 144 ~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
....++..+..++..++.+++.+++.+...+.+..+|.-|..-++....+|.+||..|=+.
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777788888888888887777777888888888888888888888777444
No 15
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=92.55 E-value=1 Score=36.61 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKA---EAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~---d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
..++.+.++.+|..+++.|+.-+. |.+.|++|++.++.+|+.-.++|+.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776655544 8899999999999999977777754
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.49 E-value=5.2 Score=32.84 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
++...+.+.+++....+++...+..++.++.+.+.++.+|+++.+..+.++
T Consensus 135 l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 135 LDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444455556666666666666666655444443
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.27 E-value=3.3 Score=35.29 Aligned_cols=27 Identities=15% Similarity=-0.052 Sum_probs=14.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.|++|.+.++++-|.+..+++.++++
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555443
No 18
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.47 E-value=3.3 Score=40.84 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
.++..++.++..++..+..+.++...+.. .+.+..+.+++++++.++.+.+.++...+.+.+.+++|.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~------------~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i 458 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPS------------EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAI 458 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777666444321 012334455556666666666666666666667777777
Q ss_pred hhHHHHHHHHHHHH
Q 027898 185 EGFLLEYDRLLADN 198 (217)
Q Consensus 185 e~l~~EYdrL~~e~ 198 (217)
+.+.++++++.+..
T Consensus 459 ~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 459 EALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665444
No 19
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.04 E-value=9.3 Score=33.04 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
++..+..+++.|+...+..++.+.+.+.+++.|+.|.++...-.
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444455555555444333
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.81 E-value=4 Score=38.91 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHh
Q 027898 107 LHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAK-AEAEALKKQSE 185 (217)
Q Consensus 107 ~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~-~d~~aLKkQae 185 (217)
+-+++.++-.++.+++.+.+| |+.+.+|+++|++.....+..+..+- .....+.+|.+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~---------------------N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISE---------------------NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 334555555566666555533 23455666666666555556555553 33456677777
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 027898 186 GFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 186 ~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++.+-.++....+.|+.+|+
T Consensus 120 ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777778887774
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.24 E-value=2.1 Score=36.43 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 027898 112 RELRLLRKAMEAAK 125 (217)
Q Consensus 112 ~~l~~l~~~~~a~~ 125 (217)
.++-.++.+++.++
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 22
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.16 E-value=6.4 Score=34.87 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027898 85 SKHMLEASLMGFLLF 99 (217)
Q Consensus 85 ~~~l~~~YLtGF~LF 99 (217)
++.++-+-+.+++.+
T Consensus 2 ~kk~~~a~~~s~v~~ 16 (265)
T COG3883 2 KKKILLAVLLSLVII 16 (265)
T ss_pred chHHHHHHHHHHHHH
Confidence 333444433333333
No 23
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.11 E-value=7.9 Score=32.70 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhhhh
Q 027898 117 LRKAMEAAKKQTRSF 131 (217)
Q Consensus 117 l~~~~~a~~kQa~~~ 131 (217)
+.+.+..+.+|+.+.
T Consensus 41 L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 41 LAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 24
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.48 E-value=6.5 Score=37.04 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 027898 89 LEASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDK 168 (217)
Q Consensus 89 ~~~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~k 168 (217)
...-++|++++.+++ ....-.++-..+.++++..+. .....++-+.+..+++++++++...+.
T Consensus 18 ~~~~l~~~~~~~s~s---~~a~~~~l~q~q~ei~~~~~~--------------i~~~~~~~~kL~~~lk~~e~~i~~~~~ 80 (420)
T COG4942 18 LASLLSAAVLAAAFS---AAADDKQLKQIQKEIAALEKK--------------IREQQDQRAKLEKQLKSLETEIASLEA 80 (420)
T ss_pred HHHHHHhcccccchh---HHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666776666 333324455555555443321 111112223355566666666666666
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
++...+.+.+.+.++.+.+...-..|..++
T Consensus 81 ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 81 QLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 666666666777777666666666555544
No 25
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.30 E-value=12 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHh
Q 027898 184 SEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 184 ae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.+++++-|..|..+...||.|+
T Consensus 118 ~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 118 RDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred hhhHHHHHHHHHHhhHHHHHHH
Confidence 3333333444444445555554
No 26
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.94 E-value=9.8 Score=33.38 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027898 89 LEASLMGFLLFLSLMMDRLHH 109 (217)
Q Consensus 89 ~~~YLtGF~LFL~lvI~r~~~ 109 (217)
..+-+.|+++++++-+..+..
T Consensus 11 ~~~l~a~v~~~~s~~~~~~l~ 31 (247)
T COG3879 11 LEMLDAGVFWMLSISLAMLLA 31 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456778877777776655443
No 27
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.36 E-value=4.7 Score=33.59 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
..+..++..|+.++...+.++ ....+-.+.++.||.-|.-+++.+..+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l-------~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEEL-------KEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444 444444444444444444444444333
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.27 E-value=7.9 Score=28.07 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.|+-+.-|+++||.+-.....+. +.++.+-+.|..+...|.+|++.-++.+..
T Consensus 19 tI~LLqmEieELKekn~~L~~e~-------~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEV-------QNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666555554544 777777778888888888888877776653
No 29
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.27 E-value=10 Score=32.01 Aligned_cols=8 Identities=13% Similarity=-0.139 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 027898 92 SLMGFLLF 99 (217)
Q Consensus 92 YLtGF~LF 99 (217)
|-...|.=
T Consensus 17 YYndIT~~ 24 (201)
T PF13851_consen 17 YYNDITLN 24 (201)
T ss_pred HHHHHHHH
Confidence 54554443
No 30
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.26 E-value=14 Score=31.01 Aligned_cols=30 Identities=50% Similarity=0.558 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
-+..++++.+.+.+.++++..+++..-+|.
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554555555555555555544443
No 31
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.18 E-value=3.9 Score=40.08 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
+..|++++...+|+.++.|..++.|+.+||--.++-+..|..+.+.++
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 344555555555555566666666669999999999888888876653
No 32
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.95 E-value=15 Score=30.87 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 027898 55 VLMSSVYSILK 65 (217)
Q Consensus 55 lF~Dsi~~~~k 65 (217)
.|++.+-.+.+
T Consensus 51 ~f~~l~e~v~~ 61 (190)
T PF05266_consen 51 TFANLAEKVKK 61 (190)
T ss_pred HHHHHHHHHHH
Confidence 45555555533
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.65 E-value=12 Score=33.88 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027898 190 EYDRLLADNQHLRNQ 204 (217)
Q Consensus 190 EYdrL~~e~~~l~~~ 204 (217)
+.+.+...++..+++
T Consensus 114 e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 34
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.33 E-value=13 Score=29.49 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH----HHHHHHHHHHHHh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD----RLLADNQHLRNQL 205 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd----rL~~e~~~l~~~~ 205 (217)
.+...++.++......++....++..++..+.+...-|. |---|+++|++++
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555666655555554443 2223445555554
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.97 E-value=22 Score=32.06 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
++.++.+|...+.+++.-+++++.++.|.+.++.+-+.+.++.+.++.+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444443333
No 36
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=86.95 E-value=5.1 Score=28.89 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+-+++++|+..|..++.|| +-|+..+++|...--...+-+.+|+.+.
T Consensus 3 Li~qNk~L~~kL~~K~eEI-------~rLn~lv~sLR~KLiKYt~LnkkLq~~~ 49 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEI-------DRLNILVGSLRGKLIKYTELNKKLQDQL 49 (76)
T ss_dssp ---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777 6666666666554444444444444433
No 37
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.79 E-value=15 Score=29.53 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFE 132 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~ 132 (217)
.++-++=+++...+++.+.+..+++++.
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k 51 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSK 51 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666677777777776666666554
No 38
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.63 E-value=7 Score=33.99 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+.+++++|+.+++..+..| +.|.+.-..|+..+++|..++.+|+....
T Consensus 152 eeL~~eleele~e~ee~~erl-------k~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 152 EELLKELEELEAEYEEVQERL-------KRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 345556666666666665555 55666666666667777667777766554
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.56 E-value=19 Score=35.16 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 102 LMMDRLHHYIRELRLLRKAMEAAKKQTRSF 131 (217)
Q Consensus 102 lvI~r~~~li~~l~~l~~~~~a~~kQa~~~ 131 (217)
-.=+|+..+|...-.|+++...+..+..-.
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888777887777766554443
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.50 E-value=24 Score=36.07 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.-..++|..+...+-+++.-+.+..+|+-+-++++.+|-....+|+++.++.+
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555556677777777777777766666665555443
No 41
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.18 E-value=9.6 Score=33.82 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
..+..+...|+..|++++.|++.+++-+++|++===..-.||++|-+|.++
T Consensus 186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 186 NNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 334445555666666666666555555555554444445677777666544
No 42
>PRK12704 phosphodiesterase; Provisional
Probab=86.14 E-value=25 Score=34.02 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 165 MKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 165 ~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+++++|..-+.+++..+++.+...++|+++.++
T Consensus 107 kke~eL~~re~~Le~re~eLe~~~~~~~~~~~~ 139 (520)
T PRK12704 107 KREEELEKKEKELEQKQQELEKKEEELEELIEE 139 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555555444
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.76 E-value=6.2 Score=38.39 Aligned_cols=55 Identities=24% Similarity=0.371 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
..+.++++.|+.+++..+.++...+.+.+.|+.+.+.+......+..|.+.|+.+
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q 214 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQ 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555655555665555555666666666665555555555554433
No 44
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=5.2 Score=39.04 Aligned_cols=58 Identities=29% Similarity=0.355 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAA-------KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~-------~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+.++.+++.|..++++...+...| -.+..+|++|++.++.+||-...|.++++..+..
T Consensus 11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888777765544 2366899999999999999999998888776653
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.69 E-value=12 Score=33.72 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
++..+++++..++.+++.+++++...+.+++.++...+.+..+=..+.++.+.++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554444444444444444444444444444444444444444333
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.41 E-value=15 Score=36.92 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQ 183 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQ 183 (217)
++..|+.+|..|++.+++.+...+.+...|+++
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777765
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.22 E-value=18 Score=31.87 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~kQ 127 (217)
.|.||..+=.+...++..+..+...
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 5677777777777777777765533
No 48
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.03 E-value=21 Score=32.18 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898 111 IRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE 190 (217)
Q Consensus 111 i~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E 190 (217)
=-+|..+++.++.++-..... ..+...+.=+++.|+.++++++..+-.+++++.....+++.+|.....++.+
T Consensus 83 k~~l~evEekyrkAMv~naQL-------DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQL-------DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776555221111 1233344446677778888888888888888877777778888888888888
Q ss_pred HHHHHHHHHHHHH
Q 027898 191 YDRLLADNQHLRN 203 (217)
Q Consensus 191 YdrL~~e~~~l~~ 203 (217)
.|.|.++......
T Consensus 156 ~~~Lre~L~~rde 168 (302)
T PF09738_consen 156 LDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 8777766644433
No 49
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.91 E-value=9.4 Score=34.46 Aligned_cols=40 Identities=30% Similarity=0.456 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
.+++++|+.+-+..++++...+.+.+.++.+-+..-++|+
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.50 E-value=18 Score=34.51 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
.++.+++.++...+.++.....+...++...+.++.++
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~ 374 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF 374 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444443333344444444443333
No 51
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=84.27 E-value=8.6 Score=31.33 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 157 KKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
..++++++.-+++.++-+++.+.|.+|++..+.++|+....|...
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f 113 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRF 113 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchh
Confidence 455566666666666667777999999999999999998777653
No 52
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.89 E-value=13 Score=37.18 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.++--+.....|+||.+|-.+..+.|..++.-|+.+...
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334445677788887777777777777667666554
No 53
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.85 E-value=22 Score=29.04 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..++++.++...+...+++..-.++....+.+++.+..++.++.++++.+.+.++.
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777776666666667788888888888888888887776653
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.80 E-value=7.3 Score=31.60 Aligned_cols=57 Identities=30% Similarity=0.379 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS--EGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa--e~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..++.++..|+.++...+.+.+..++++..|.++- +.+...-..|..|...+.++++
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555545555443 3334444445555555554444
No 55
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=83.63 E-value=3.1 Score=34.84 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEA 170 (217)
Q Consensus 155 e~~~Lk~el~~~~kel 170 (217)
++++++.+....++++
T Consensus 137 k~D~~eA~~t~lk~~~ 152 (192)
T COG5374 137 KIDKMEADSTDLKARL 152 (192)
T ss_pred chhhhhcchHHHHHHH
Confidence 3444554444443333
No 56
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.03 E-value=20 Score=27.96 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=24.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 176 EAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
....|.++...+..-++.|.+.+.-|-+|++.
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577778888888888888887778787764
No 57
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=83.02 E-value=19 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
++|.+|.+|+..|=+.|+.+-+.|.++++
T Consensus 41 ~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq 69 (139)
T COG4768 41 KGLTSQVDGITHETEELLHKTNTLAEDVQ 69 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777777766665
No 58
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=82.90 E-value=16 Score=29.34 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH-HHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD-NQHLRN 203 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e-~~~l~~ 203 (217)
..++.|+.|++..+..+++....+..|++.+..+..++.+..++ |..++.
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 34556666666666677777777799999999999999999888 666654
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.26 E-value=24 Score=31.35 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+++++..+++++..++.+.++++...+.+.+.++++++-+
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444
No 60
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.26 E-value=8.4 Score=29.44 Aligned_cols=48 Identities=38% Similarity=0.511 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
..+..++..+...-.++ .+||+|...+..|=.+|.-|+++|+..+...
T Consensus 8 ~~l~~le~~l~~l~~~~-------~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEEL-------EELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555 9999999999999999999999999888753
No 61
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=82.17 E-value=7.2 Score=28.47 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+..++++|+.+....+.++....++. ...++...+.+=+++-+|+.+++
T Consensus 5 l~~~~~~L~~~~~~l~~~i~~~~~~l---~~~~~~~v~~hI~lLheYNeiKD 53 (83)
T PF07061_consen 5 LEAEIQELKEQIEQLEKEISELEAEL---IEDPEKIVKRHIKLLHEYNEIKD 53 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---ccCHHHHHHHHHHHHHHHhHHHH
Confidence 33445555555554444443322221 33455555556666666666654
No 62
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.17 E-value=16 Score=35.60 Aligned_cols=34 Identities=6% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
++.+.|+.+.+.....+..-+.|+.+|..+....
T Consensus 206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 206 EERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555554333
No 63
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.14 E-value=11 Score=29.12 Aligned_cols=48 Identities=35% Similarity=0.403 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
..+..++..+...-+++ ..||.++..+-.|=-+|.-|+++|+..+...
T Consensus 8 d~l~~le~~l~~l~~el-------~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKEL-------GALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666676666666 9999999999999999999999999888853
No 64
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=81.98 E-value=13 Score=30.24 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHhhHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKK---QSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk---Qae~l~~EYdrL~~e~~ 199 (217)
.+.++.+.+.+++..+.+|..+...++.|++ =.+.|++.++.|..++.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666 34455555555555555
No 65
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=81.94 E-value=9.6 Score=30.52 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel 170 (217)
---||.+.|..+|--+. ++..++++++.+++..--|-+. ...+|.+.......++.+++.-|+.++++.+.++
T Consensus 38 lsLgl~~LLLV~IcVig---sQ~~qlq~dl~tLretfsNFss---st~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeL 110 (138)
T PF03954_consen 38 LSLGLSLLLLVVICVIG---SQNSQLQRDLRTLRETFSNFSS---STLAEVQALSSQGGSLQDKVTSLEAKLEKQQQEL 110 (138)
T ss_pred HHHHHHHHHHHHHHhhc---CccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHhccccHHhHcccHHHHHHHHHHHH
Confidence 44577776665554333 3456677777776644332221 1223333333333446677777888888887777
No 66
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=81.77 E-value=5.6 Score=36.39 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=30.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhhHHHHHHH
Q 027898 140 DERKGLGDDIATLKTKIKKLESECEMKDKEANA--AKAEAEALKKQSEGFLLEYDR 193 (217)
Q Consensus 140 ~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~--~~~d~~aLKkQae~l~~EYdr 193 (217)
++.-.+..||.+|++|+++|+.+++..+.+..+ ...+.+++..|++.+.+-.|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444456666677777777777777766665544 233344444444444444444
No 67
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=81.55 E-value=24 Score=28.55 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=20.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLS-LMMDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 92 YLtGF~LFL~-lvI~r~~~li~~l~~l~~~~~a~~ 125 (217)
||..+.+.+. +.+-.+..+..++.+++..++.++
T Consensus 2 ~i~i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm 36 (151)
T PF14584_consen 2 YIIIGLLVLVIILLILIIILNIKLRKLKRRYDALM 36 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3433333333 334455566667788888888877
No 68
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.21 E-value=29 Score=31.00 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhcc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESID 209 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~ 209 (217)
...+++..++..++-.+.--+..+..-|+|.+.|+.|--|+..|.++.|.....+|
T Consensus 81 k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 81 KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34456677777777777777778889999999999999999999998887666444
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.15 E-value=17 Score=34.59 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+..++...+..++....+....+.+++.|......+..+..++.++...++.
T Consensus 342 l~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 342 LKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444433
No 70
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.08 E-value=3.8 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.089 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 027898 91 ASLMGFLLFLSL-MMDRLHHYIRELRLLRKAMEA 123 (217)
Q Consensus 91 ~YLtGF~LFL~l-vI~r~~~li~~l~~l~~~~~a 123 (217)
+...+..|+.|. .+...+.+...+..++..++.
T Consensus 192 ~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~ 225 (344)
T PF12777_consen 192 ASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEE 225 (344)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555566663 344455555555555555443
No 71
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=80.86 E-value=10 Score=34.70 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=49.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHhhHHHHHHHHHHHHHHHHHHhhhccccCCCcC
Q 027898 145 LGDDIATLKTKIKKLESECEMKDKEANAAKAEAEA--LKKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKKD 216 (217)
Q Consensus 145 ~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~a--LKkQae~l~~EYdrL~~e~~~l~~~~~~~~~~~~KK~ 216 (217)
..+|+..|++|+..||+|.++++.++++-++|... +-+..+-.+.-||++.+=-++.|+... +.+-+.|++
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vl-fq~d~~~ld 102 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVL-FQRDDLKLD 102 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh-hcccccccc
Confidence 34567789999999999999999999888887764 333344457788888777777665332 223344544
No 72
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=80.71 E-value=48 Score=32.77 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCc-hhhh-------hhhhhhhhhhHH----------
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDN-VDER-------KGLGDDIATLKT---------- 154 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~-~~~~-------~~~~~~~~~l~~---------- 154 (217)
.++=.==.++|+.=+-.--..+..++...+.+.-|++.+..+.... .+.. ...+++|..|..
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555665555555566667777777777766664322111 1110 012223333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 155 -KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 155 -e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+.+..+.+|...++++++....++.|+++.++. +.||.+..|..-|+.
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 334455556666666666666778888888777 778888777776653
No 73
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.70 E-value=18 Score=25.71 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=9.0
Q ss_pred HhHhhHHHHHHHHHHHHHHHHH
Q 027898 182 KQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 182 kQae~l~~EYdrL~~e~~~l~~ 203 (217)
.+-+.|..|..+|.++++.-+.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~ 60 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 74
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.18 E-value=31 Score=31.20 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCC-Cchhhhh---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 109 HYIRELRLLRKAMEAAKKQTRSFEDGKN-DNVDERK---GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 109 ~li~~l~~l~~~~~a~~kQa~~~~~~~~-~~~~~~~---~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
.+=.++-.+++....++.++........ ....+.. .-..+..+-+.++..|..+|..+..+....+.++..|..|.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655544432110 0001111 11123334456788889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Q 027898 185 EGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 185 e~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
-.++...-.+.-|+++++..+..
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999888887764
No 75
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=79.80 E-value=35 Score=28.89 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHH----HHHHHHHH-------HHHHHHHHH
Q 027898 108 HHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKL----ESECEMKD-------KEANAAKAE 176 (217)
Q Consensus 108 ~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~L----k~el~~~~-------kel~~~~~d 176 (217)
+.|=++|+.+++.+..+.+++.+... ..+..- .-.+.|.+.| +.++...+ ..++....|
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~----~~~~~~------~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~D 168 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRS----DTDSKP------ALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVRED 168 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----CCcchH------HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Confidence 44556788888888877666544211 000000 1122333332 12232221 256677889
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 177 AEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 177 ~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
+++++.|.++|+.+...=..|.+.|+
T Consensus 169 l~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 169 LDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999887765555555543
No 76
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=79.80 E-value=10 Score=29.19 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.+..|+..|-..-+++ .+||+|+..+-.|=..|.=|+++|++.|.-
T Consensus 9 ~v~~le~~l~~l~~el-------~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAEL-------GGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3455555665555555 999999999999999999999999999875
No 77
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=79.77 E-value=30 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLR 118 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~ 118 (217)
+-.|.+|+++|..-++.-+......+
T Consensus 13 ~i~F~ill~ll~~~~~~pi~~~l~~R 38 (161)
T COG0711 13 LIAFVILLWLLKKFVWKPILKALDER 38 (161)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55788999988777776666555433
No 78
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.33 E-value=31 Score=27.68 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFL 188 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~ 188 (217)
.+++.|+.++.....++..-+.|+.++++.-+++.
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 79
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.67 E-value=12 Score=30.34 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=38.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 142 RKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEA--EALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 142 ~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~--~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
....+.++..+.+++..|+.++...+.++..-.+.. +-|..+.+.+..|-..+.+....++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666666666665543322 45666777777777777666666665
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.45 E-value=15 Score=32.09 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+.+++++.+++...+.+...+..++.+++|...++.+-+...+..+.+++++
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556666666666666666655555555555
No 81
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=78.36 E-value=31 Score=27.17 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027898 105 DRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~ 125 (217)
.+..++.+++..++++++.+.
T Consensus 20 ~~~~~v~~~l~~LEae~q~L~ 40 (126)
T PF09403_consen 20 TATASVESELNQLEAEYQQLE 40 (126)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 344578888888888888765
No 82
>PRK14139 heat shock protein GrpE; Provisional
Probab=78.27 E-value=12 Score=31.49 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=31.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 147 DDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+++..+..++++++.+++..+..+....+|++..||..+.-
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888888888888888888888866543
No 83
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.14 E-value=22 Score=25.25 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHHHhHhhHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~ 195 (217)
..++++.+....+.+.|.
T Consensus 50 ~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 50 KELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 84
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.74 E-value=43 Score=33.14 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 101 SLMMDRLHHYIRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 101 ~lvI~r~~~li~~l~~l~~~~~a~~kQ 127 (217)
+.=..|+..+|-.-..+.+.+...+.+
T Consensus 374 ~~d~~rika~VIrG~~l~eal~~~~e~ 400 (652)
T COG2433 374 WKDVERIKALVIRGYPLAEALSKVKEE 400 (652)
T ss_pred hhhHHHHHHHeecCCcHHHHHHHHHhh
Confidence 444566666666555555555544433
No 85
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.66 E-value=34 Score=35.82 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh--hhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 027898 109 HYIRELRLLRKAMEAAKKQTRS--FEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEAN-------AAKAEAEA 179 (217)
Q Consensus 109 ~li~~l~~l~~~~~a~~kQa~~--~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~-------~~~~d~~a 179 (217)
-+..++.+++.++.|++...-- +++......++.+.....+.++..+++.++.+++..+...- ....+.+.
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~ 487 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK 487 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556778888888877632000 00000000112222222233333333333333333333222 22445677
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 180 LKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 180 LKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
++++..+...|..++.+|+.+++.++..
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888877777543
No 86
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=77.34 E-value=31 Score=26.93 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHH----HHHHHHH
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLAD----NQHLRNQ 204 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e----~~~l~~~ 204 (217)
.+..++.-.++++.+.++|+..|+||..| |++++..
T Consensus 66 ~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~ 105 (132)
T PF10392_consen 66 SIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKL 105 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455667789999999999999999877 4555443
No 87
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.30 E-value=47 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=4.9
Q ss_pred HhHhhHHHHHHHH
Q 027898 182 KQSEGFLLEYDRL 194 (217)
Q Consensus 182 kQae~l~~EYdrL 194 (217)
++.+....+..+.
T Consensus 119 ~~~~~~~~~~~~~ 131 (302)
T PF10186_consen 119 EQLEELQNELEER 131 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.19 E-value=23 Score=25.20 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.-+.-++++||.+-.....+. ...+.+-++|..|-..|..||..-|+.+.
T Consensus 21 ~LLQmEieELKEknn~l~~e~-------q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEV-------QNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666665555444444 55556666677777777777776665554
No 89
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.00 E-value=48 Score=28.59 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
..++...|..+++..+++++..+...+.+.++.+.++++-++|..+.+.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444455555666655555555544443
No 90
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=76.97 E-value=13 Score=27.37 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=14.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
.+..++++++++..++--.|-.|+.
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhh
Confidence 3346666666666666555544443
No 91
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.96 E-value=44 Score=28.17 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
++..+...+++++.-+-+.+.|.-+.+.++.|.|.|.+..+
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555544443
No 92
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=76.91 E-value=9.6 Score=30.26 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 5 LYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQR 69 (217)
Q Consensus 5 vf~~L~~Em~~~llLvlPlP~R~~~~~~l~~~~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~ 69 (217)
.|.+++.=.+++++|+.|+|.-.. .+-..++.++.+|+++.-+++++.
T Consensus 16 ~~Sl~~~g~v~~~~Ll~PWP~~~~-----------------~~wl~Ll~lvvfe~irsqrri~~~ 63 (132)
T PF07254_consen 16 LLSLLVHGAVVLLILLAPWPESYT-----------------PLWLLLLSLVVFECIRSQRRIRSR 63 (132)
T ss_pred HHHHHHHHHHHHHHHHhccCcchH-----------------HHHHHHHHHHHHHHHHHHHhHHhC
Confidence 344555556677789999993211 112224455566777776666544
No 93
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.50 E-value=18 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
.++|+.+++.....++.-+++.+.|+++..-.+.+|.-|..=-++.
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333555555555555555554433333
No 94
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=76.36 E-value=27 Score=25.37 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHhhHHHHHHH-------HHHHHHHHHHHhh
Q 027898 174 KAEAEALKKQSEGFLLEYDR-------LLADNQHLRNQLE 206 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdr-------L~~e~~~l~~~~~ 206 (217)
+-+++-||.+-..+..|.+. |..++++++.+.+
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33446666666666666554 6667777776554
No 95
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.16 E-value=37 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLS--------LMMDRLHHYIRELRLLRKAMEA 123 (217)
Q Consensus 92 YLtGF~LFL~--------lvI~r~~~li~~l~~l~~~~~a 123 (217)
-.-+.+|+.- -++.++-.+..++-..+.++.+
T Consensus 720 ~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 720 KLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667653 4677788888888777776654
No 96
>PRK14162 heat shock protein GrpE; Provisional
Probab=75.48 E-value=9.5 Score=32.23 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=32.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 144 GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 144 ~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
....++..+..+++.++.+++..+..+..+.+|++..|+..+.=
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE 79 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKE 79 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788888888888888888888888888876543
No 97
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.36 E-value=44 Score=35.12 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
..+++.++......+.+.+.+++.++||..+++++.
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555554
No 98
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.35 E-value=17 Score=24.64 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHHHHhHhhHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~ 196 (217)
+.|+++...+..+++.|..
T Consensus 43 ~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 99
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=75.17 E-value=21 Score=34.85 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
...+++++|+.+++.....++++.++++..++|.++.
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~ 252 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKAD 252 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445666666666666666666655555555555444
No 100
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.72 E-value=54 Score=28.10 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
....+..|...++........++..+..|.++...+..+.+.-.++|..++..++
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777888888888888888888888888888887775
No 101
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=74.52 E-value=32 Score=27.83 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhcc
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESID 209 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~ 209 (217)
++++....+............+-.++..+++.|-.|..+|.+-.+.+...|..++
T Consensus 22 ~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 22 QTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 3344444455555555555666689999999999999999888888888888774
No 102
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=74.33 E-value=22 Score=26.92 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.7
Q ss_pred HHHHHhHhhHHH
Q 027898 178 EALKKQSEGFLL 189 (217)
Q Consensus 178 ~aLKkQae~l~~ 189 (217)
+.|+.+.+.++.
T Consensus 51 ~~L~~eI~~L~~ 62 (105)
T PRK00888 51 DQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHhhC
Confidence 444444444443
No 103
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.27 E-value=39 Score=26.31 Aligned_cols=51 Identities=35% Similarity=0.448 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH-------HHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD-------NQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e-------~~~l~~~~~ 206 (217)
+.+|+-+|-.+.+ +++....++..|+.+.+.++..|+.+++= .+.|+.++.
T Consensus 49 l~~Eiv~l~~~~e----~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 49 LREEIVKLMEENE----ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3445555544443 33344455588888888888888877653 355665544
No 104
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.13 E-value=31 Score=27.52 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAA 173 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~ 173 (217)
+|.++..++..|+.+++.....+..+
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 105
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.03 E-value=78 Score=33.05 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
..+..+++++.+.++.-|+.|.|+|+++-|..-.....+|+|++..
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666669999999999999998887888888888754
No 106
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.95 E-value=27 Score=27.22 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=11.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
.+..++...+..++..|..+|+.
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 107
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.82 E-value=59 Score=28.15 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+++......+...+..++.++.+....+..+..+..||.+|.++-+.++.+
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444666777777888888888999999999999999999999998877
No 108
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.82 E-value=26 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~ 125 (217)
.+.++..+-.+...+....+.++
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 109
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=73.63 E-value=41 Score=26.26 Aligned_cols=10 Identities=40% Similarity=0.544 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 027898 190 EYDRLLADNQ 199 (217)
Q Consensus 190 EYdrL~~e~~ 199 (217)
|||.|.+..+
T Consensus 116 eyd~La~~I~ 125 (139)
T PF05615_consen 116 EYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHh
Confidence 8888866654
No 110
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.58 E-value=60 Score=28.11 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
|.+|-..+-.+|..-..++..-++-+...+.+-+.....-.|+.+||..|+++.+.
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433333333333334444556677777777776663
No 111
>PHA02047 phage lambda Rz1-like protein
Probab=73.36 E-value=16 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
++.+.+..+|+..+..+..-+..+++|..+++....|-++-+++|.
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666666778888888888888777766653
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.22 E-value=69 Score=31.59 Aligned_cols=49 Identities=22% Similarity=0.151 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
++++++..+++..++++.+.+++...++.+.+.+.++-.++..+..+++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555444444433
No 113
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.20 E-value=53 Score=33.22 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=15.3
Q ss_pred HHHHHHHhHhhH---HHHHH-------HHHHHHHHHHHHhh
Q 027898 176 EAEALKKQSEGF---LLEYD-------RLLADNQHLRNQLE 206 (217)
Q Consensus 176 d~~aLKkQae~l---~~EYd-------rL~~e~~~l~~~~~ 206 (217)
+--.|+||..+| |-||+ ||.+|.+-|+.|++
T Consensus 105 ENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 105 ENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566665444 34444 44455455555544
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.13 E-value=42 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=17.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 177 AEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 177 ~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.++|+|...++.+...|..+-+..+..+.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555555554
No 115
>PRK14148 heat shock protein GrpE; Provisional
Probab=72.82 E-value=12 Score=31.76 Aligned_cols=39 Identities=38% Similarity=0.545 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
++..+.+++++|+.+++..+..+..+.+|++..||..+.
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777776543
No 116
>PRK14158 heat shock protein GrpE; Provisional
Probab=72.79 E-value=13 Score=31.46 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=28.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
++..+.+++++++.+++..+..+..+.+|++..|+..+.-
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888877777778888888888766543
No 117
>PRK14145 heat shock protein GrpE; Provisional
Probab=72.70 E-value=20 Score=30.34 Aligned_cols=41 Identities=34% Similarity=0.352 Sum_probs=28.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 146 GDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 146 ~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
..++..+.+++++++.+++..+..+.++.+|++..|+.++.
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777777777777787777776543
No 118
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=72.59 E-value=36 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 177 AEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 177 ~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.-+.+-|.+.|.+.|-.++.+|+..|.+-.
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999987644
No 119
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=72.08 E-value=21 Score=29.64 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
+++|+++|..+++..+.- ......||..+..+..|-|+-.+.|
T Consensus 125 L~~eI~~L~~~i~~le~~----~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 125 LEDEIKQLEKEIQRLEEI----QSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777644443 3444788888888887777776655
No 120
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.59 E-value=44 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=12.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
..|++|.+.|++|+..|..++...
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444333
No 121
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.55 E-value=41 Score=28.04 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 027898 98 LFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAK--- 174 (217)
Q Consensus 98 LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~--- 174 (217)
.|-+|=-......-..+..+++..+.+.+.........+.. ........+-..+-+++++|+.+++..++++.+-.
T Consensus 55 ~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 55 YYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556556666666677777777776665555543311000 00001101112233455666666666666664321
Q ss_pred -HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 175 -AEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 175 -~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.-++.++++......+-+|-.|...-++.-+.
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 23556666666666666676666655554443
No 122
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.48 E-value=29 Score=23.50 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=15.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+-+++..+.+..-..+|++=|+-.-++.
T Consensus 24 ~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 24 EEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5555555555555555665555444433
No 123
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.21 E-value=43 Score=25.47 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
......|+.+|+.++..|++.+.+.+.|.=.-..|.+.-..|.+|.+
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888899999999988888888877666666665555555554
No 124
>PRK09039 hypothetical protein; Validated
Probab=70.06 E-value=88 Score=28.55 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+..++...+.+..+...++..-+.++++||.|...++.+-+-..++....+.+++.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555666666666677778888888888877777776666666665553
No 125
>PRK14143 heat shock protein GrpE; Provisional
Probab=70.01 E-value=26 Score=30.51 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
++..+..++++|+.+++..+..+.++.+|++.+||..+.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777778888887777777888888888876654
No 126
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=69.96 E-value=54 Score=26.11 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
++++.....+......+..+...++.+-.+...+..+-+..-..|+.+..+..
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444555666666666666666566666655544
No 127
>PRK14158 heat shock protein GrpE; Provisional
Probab=69.90 E-value=28 Score=29.46 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
..++++.++.+++..++++
T Consensus 38 ~~~~~~~le~~l~~le~e~ 56 (194)
T PRK14158 38 AADRIKELEEALAAKEAEA 56 (194)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3445566665554444433
No 128
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.85 E-value=64 Score=26.89 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAE-ALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~-aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+..+.+.|+.++...+......++..+ ......+..+.|.+-|...++.+++++.
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443333332222 2333344456666777666777776665
No 129
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.69 E-value=31 Score=30.64 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..+..+-...+..|++...|.+--+|..+.|++-==--+|||+++..+|+
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 333333333444444444555555555555554433334566666655554
No 130
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=69.55 E-value=38 Score=24.59 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
-++|-.++...+..| ++|-...+....|.+.|..|++-||....
T Consensus 18 k~~Li~ei~~LQ~sL-------~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 18 KEELIQEILELQDSL-------EALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555 77777777788888888888877776544
No 131
>PRK02224 chromosome segregation protein; Provisional
Probab=69.45 E-value=52 Score=33.37 Aligned_cols=10 Identities=30% Similarity=0.115 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 027898 188 LLEYDRLLAD 197 (217)
Q Consensus 188 ~~EYdrL~~e 197 (217)
+.+++.+.++
T Consensus 418 ~~~~~~l~~~ 427 (880)
T PRK02224 418 REERDELRER 427 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 132
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=69.36 E-value=39 Score=24.27 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=9.1
Q ss_pred HHHHHhHhhHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e 197 (217)
+.+.+|+..+..+-+++.++
T Consensus 43 ~~i~~e~~~ll~~~n~l~~d 62 (90)
T PF06103_consen 43 DPITKEINDLLHNTNELLED 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 133
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=69.13 E-value=56 Score=35.34 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~ 195 (217)
.+..++..+..+++....++..++.+.+.+++|.+.++++++.|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566666667777777777777777777777777777776653
No 134
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.70 E-value=60 Score=35.57 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 173 AKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 173 ~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
.+.+++.+++|...++.+.+.+..+
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~e 412 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTR 412 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333333333333
No 135
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.68 E-value=36 Score=36.13 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+++++..++...+..++++..+..-..+-..++.++++.+.+|...|..++.
T Consensus 915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444555555556666666666666665555544433
No 136
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=68.51 E-value=80 Score=31.29 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=23.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 147 DDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
.+|+.+..+++....+|++.++.+ .+.+|.+.+|+...-|
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL-~~~sDYeeIK~ELsiL 356 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKL-NSRSDYEEIKKELSIL 356 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhccHHHHHHHHHHH
Confidence 344555556666666666665555 3346777777665444
No 137
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=58 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 027898 104 MDRLHHYIRELRLLRKAMEAAKKQTRSFED 133 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~kQa~~~~~ 133 (217)
|+++..+..+...+.+.++..+.|.++...
T Consensus 22 iN~Fsrl~~R~~~lk~dik~~k~~~enled 51 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKADIKEAKTEIENLED 51 (131)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777788888888888777654
No 138
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.03 E-value=98 Score=32.59 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
..+.+.+.+++.....++..+.++...+-+.....++|....+++
T Consensus 406 ~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~l 450 (1174)
T KOG0933|consen 406 ITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEEL 450 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHH
Confidence 334444445554444444444444555555555555554444443
No 139
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.75 E-value=1.2e+02 Score=29.83 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDR 193 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdr 193 (217)
++++..|.++.++++.+.+.+.+.|.|-+-.+..+|.+
T Consensus 334 ve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 334 VERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444455555555555555555554444444433
No 140
>smart00338 BRLZ basic region leucin zipper.
Probab=67.74 E-value=28 Score=23.56 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=9.6
Q ss_pred HHHHHhHhhHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~ 196 (217)
..|+.++..+..|++.|.+
T Consensus 43 ~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 43 ERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544433
No 141
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.42 E-value=48 Score=24.54 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027898 112 RELRLLRKAMEAAKKQ 127 (217)
Q Consensus 112 ~~l~~l~~~~~a~~kQ 127 (217)
.++-.+++..+.+.++
T Consensus 43 ~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 43 QELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3334444444433333
No 142
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=67.30 E-value=61 Score=25.70 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
+++|+.++..++-++ ..||++.+.+...=
T Consensus 96 ~~kLe~e~~~Kdsei-------~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 96 VKKLEAELRAKDSEI-------DRLREKLDELNRAN 124 (131)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 455555555555555 77777766654443
No 143
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.29 E-value=73 Score=26.56 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDK----EANAAKAEAEAL 180 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~k----el~~~~~d~~aL 180 (217)
.++-.+-.++..++.....+....+.+..+.. .+.+......+...+..++++|+.+++.... .+..-+.+....
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~-~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGRE-ESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555566666666666666655555533222 2234455666677788888888888875433 455555666667
Q ss_pred HHhHhhHHHHHHHH
Q 027898 181 KKQSEGFLLEYDRL 194 (217)
Q Consensus 181 KkQae~l~~EYdrL 194 (217)
+.-++.-+..+.-|
T Consensus 148 ~~~anrwTDNI~~l 161 (188)
T PF03962_consen 148 KEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHhhHHHH
Confidence 76666666555544
No 144
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=67.08 E-value=85 Score=27.26 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027898 190 EYDRLLADNQHLRNQLES 207 (217)
Q Consensus 190 EYdrL~~e~~~l~~~~~~ 207 (217)
+|+.+.+|+++|++.+..
T Consensus 94 ~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 94 ELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344566677777776654
No 145
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.07 E-value=81 Score=33.64 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.+..++.+|...+.++..+++++..+++-..++..--.++..+-+.+++.++.
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~ 595 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS 595 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555545555555555777776666655555555555555555443
No 146
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.00 E-value=30 Score=33.15 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=20.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.|.+|.+.++..-+.+.+|+..|+.|++
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777777777765
No 147
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.76 E-value=53 Score=24.77 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELRLLRK 119 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~~l~~ 119 (217)
-++.+..++++.++|.+.-=.+...+++
T Consensus 15 ~~~~~~~~~~~~l~~~~a~~~~~~~l~~ 42 (106)
T PF10805_consen 15 VFGIAGGIFWLWLRRTYAKREDIEKLEE 42 (106)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444555666666666544344444433
No 148
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.69 E-value=38 Score=23.01 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQ 183 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQ 183 (217)
|..++..|..++.+...++.....|+.+-|..
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444444444433
No 149
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.40 E-value=41 Score=30.41 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=10.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
.+.+++++.+.++++.|.+++..
T Consensus 84 ~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 84 AAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 150
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=66.01 E-value=63 Score=25.38 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
.+++.++.++...-.++ ..|+.+...+...|+.++..++
T Consensus 55 ~~l~~~r~~l~~~~~~~-------~~L~~~~~~k~~~~~~l~~~~s 93 (150)
T PF07200_consen 55 PELEELRSQLQELYEEL-------KELESEYQEKEQQQDELSSNYS 93 (150)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHccCC
Confidence 34445555554444444 6666666666666666655553
No 151
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=65.91 E-value=23 Score=23.78 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
..=+..|+..|+++++|| .++++.||..+++.
T Consensus 10 d~yI~~Lk~kLd~Kk~Ei-------------l~~ln~EY~kiLk~ 41 (56)
T PF08112_consen 10 DKYISILKSKLDEKKSEI-------------LSNLNMEYEKILKQ 41 (56)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 355778888899888888 66788888777654
No 152
>PRK14148 heat shock protein GrpE; Provisional
Probab=65.18 E-value=29 Score=29.39 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=17.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.++++++.+...|-|+..|.++.+...+
T Consensus 50 ~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 50 KELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666655444
No 153
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=65.12 E-value=1.3e+02 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.376 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELRLLR 118 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~~l~ 118 (217)
.|-.|.+|++++.+-++.-|...+.-+
T Consensus 7 qlInFlIl~~lL~kfl~~Pi~~~l~~R 33 (445)
T PRK13428 7 QLIGFAVIVFLVWRFVVPPVRRLMAAR 33 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888887666666555554433
No 154
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.93 E-value=93 Score=26.94 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+..+++.|+.+.............+.+.+.++++.|......+...-..+-.+
T Consensus 57 L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~ 109 (264)
T PF06008_consen 57 LEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQ 109 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333334444444444444444444444444333333
No 155
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=64.81 E-value=87 Score=33.02 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKK 182 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKk 182 (217)
+++.++..+.+..+.++..+.+++++++.
T Consensus 323 a~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 323 AKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34455555555555566555555555555
No 156
>PRK14161 heat shock protein GrpE; Provisional
Probab=64.45 E-value=20 Score=29.84 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
++..+++++|+.+++..+..+.++.+|++..|+.++.-
T Consensus 22 ~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 22 ETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777788888887766543
No 157
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.34 E-value=1.4e+02 Score=28.85 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 166 KDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 166 ~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
+.++|.+.+.+++..+++.+...++.+.+.++...
T Consensus 95 r~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555555555444433
No 158
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=64.09 E-value=62 Score=25.44 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=20.3
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..++.+|.|......+|..|..++..+..+++
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777666777777666666655444
No 159
>PHA03011 hypothetical protein; Provisional
Probab=63.67 E-value=15 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=17.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
.+++.|.+++-.-|+.|.+||+.+.+
T Consensus 60 Nai~e~ldeL~~qYN~L~dEYn~i~N 85 (120)
T PHA03011 60 NAIIEILDELIAQYNELLDEYNLIEN 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777765543
No 160
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.49 E-value=46 Score=30.35 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=20.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
.+++.+++|.+.++.+|-.+.||.+.+..
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ 161 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVT 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777777777777777766543
No 161
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=63.43 E-value=50 Score=23.34 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=2.8
Q ss_pred HHHhHhhH
Q 027898 180 LKKQSEGF 187 (217)
Q Consensus 180 LKkQae~l 187 (217)
|+.+...+
T Consensus 38 Lr~~~~e~ 45 (74)
T PF12329_consen 38 LRAKIKEL 45 (74)
T ss_pred HHHHHHHH
Confidence 33333333
No 162
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.19 E-value=44 Score=22.54 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=14.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
..|...-..|..+++.|..++..|+.+
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555543
No 163
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=63.14 E-value=50 Score=23.17 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+.+..-.|+...-.+-+.|.+|.+.++.+++
T Consensus 32 ~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 32 RRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555566666666665554
No 164
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.11 E-value=66 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 172 AAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 172 ~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
.+..|++.|.+-.+++++-|-+|.+..+++
T Consensus 1264 ~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1264 LAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555554444433
No 165
>PRK14155 heat shock protein GrpE; Provisional
Probab=62.63 E-value=27 Score=29.86 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE 190 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E 190 (217)
.++.+++++++.+++..+..+.++.+|++..||..+.-..+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888888888888888899999999877654433
No 166
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.48 E-value=1.5e+02 Score=28.57 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+...+.+|+..+.+|.+++.|...|+.-++.|..|-.+...++..++++..
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777888888888888888888888888888888877776554
No 167
>PRK14147 heat shock protein GrpE; Provisional
Probab=62.47 E-value=21 Score=29.46 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
..+..++++|+.+++..+..+..+.+|++..++..+.-
T Consensus 21 ~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 21 DPLKAEVESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566778888888888788888888888888866543
No 168
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.19 E-value=1.3e+02 Score=30.13 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
+.+...|+-+++..++-|+.++..+++.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 169
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=62.14 E-value=39 Score=30.45 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
++++.|-......-.+.+..+++...++++.+.+++++|.+..|+++
T Consensus 22 eK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k 68 (309)
T PF09728_consen 22 EKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555566677777777777777777777654
No 170
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.10 E-value=1e+02 Score=26.39 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
....++..|...+..++.++.-.+.....+..|++.-|+|-++....+..
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777888888877777776665544
No 171
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.86 E-value=62 Score=23.89 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
..+.+.+.+|..|+.+.+.+.-.+.++.++|.-....|+.-.++-.+-..+|+
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556677777777777777766666666666666666555554444444443
No 172
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=61.82 E-value=49 Score=26.83 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 027898 108 HHYIRELRLLRKAMEAAKKQTRS 130 (217)
Q Consensus 108 ~~li~~l~~l~~~~~a~~kQa~~ 130 (217)
.....+...++.+..+++++..+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHc
Confidence 44555566666666666655333
No 173
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.41 E-value=32 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 027898 147 DDIATLKTKIKKLESECEMK 166 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~ 166 (217)
+||..|+-|+++|...|...
T Consensus 36 EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 36 EENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555666665555433
No 174
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=61.32 E-value=44 Score=31.42 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 104 MDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~ 125 (217)
+.++..+=.+..+++.+++.++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr 48 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQ 48 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 175
>PRK14161 heat shock protein GrpE; Provisional
Probab=61.28 E-value=26 Score=29.12 Aligned_cols=33 Identities=30% Similarity=0.293 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+.+.+++|.+.+...|-|+..|.++.+...+
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333366666666666666677777666655544
No 176
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.27 E-value=1.6e+02 Score=28.30 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSF 131 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~ 131 (217)
++++.=+..|-..+.+++.++|..+.+
T Consensus 245 ~km~kdle~Lq~aEqsl~dlQk~Leka 271 (575)
T KOG4403|consen 245 NKMMKDLEGLQRAEQSLEDLQKRLEKA 271 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444
No 177
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.13 E-value=1.2e+02 Score=30.95 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.|+.++++-.+|.--..+-.+|-.||.+=.-.||+.+.
T Consensus 516 kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 516 KLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred hHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555555443334444333
No 178
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.13 E-value=28 Score=33.36 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 027898 165 MKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 165 ~~~kel~~~~~d~~aLKkQa 184 (217)
..+..|+.-+.+.+.|+.|.
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555554
No 179
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.09 E-value=92 Score=25.59 Aligned_cols=29 Identities=31% Similarity=0.291 Sum_probs=17.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
.+.+.+|++.+..++|++.|.+..+.++.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33366666666666666666655555543
No 180
>PRK14140 heat shock protein GrpE; Provisional
Probab=60.99 E-value=27 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
.++.+..++++++.++...+..+.++.+|++..||.++.=
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE 77 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKE 77 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888888888888888876543
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.97 E-value=1.6e+02 Score=29.98 Aligned_cols=32 Identities=38% Similarity=0.500 Sum_probs=18.5
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+.+.+|||.+..+.+=|+|..+.+.|+.+++
T Consensus 223 ~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 223 QELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34456666666666666666666555554443
No 182
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=60.97 E-value=1.2e+02 Score=26.98 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQS--EGFLLEYDRLLA 196 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQa--e~l~~EYdrL~~ 196 (217)
++..|+.||...+.+...+|+.+..+|-|. |++.-.++-+.|
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E 209 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIE 209 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466788888888777777777777777664 566666666644
No 183
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.97 E-value=42 Score=21.58 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=18.5
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
++.++|+..-+.|.+|=++|..+...|...++
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666666666666666666655544
No 184
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.91 E-value=1.1e+02 Score=34.60 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~ 196 (217)
+++|...+.....+++..++...-+.+|-..+..+|..|.+
T Consensus 1099 i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1099 IKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333334444444444444443333
No 185
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.17 E-value=51 Score=22.35 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 149 IATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 149 ~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
+..|..++.+|..++....-++..++.|...--....|...-|
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 3445555555555555555555555554444444444444433
No 186
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.13 E-value=1.1e+02 Score=29.84 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=12.0
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 176 EAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+++.+....++....|..+.++++.+.+++
T Consensus 363 ~~~~~~~~i~~~~~~ysel~e~leel~e~l 392 (569)
T PRK04778 363 QYDEITERIAEQEIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444433
No 187
>PRK14151 heat shock protein GrpE; Provisional
Probab=59.95 E-value=57 Score=27.06 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE 190 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E 190 (217)
++.+++++++.+++..+..+..+.+|++..||.++.=..+
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~ 63 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEK 63 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888899999999887655433
No 188
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=59.94 E-value=52 Score=28.15 Aligned_cols=49 Identities=33% Similarity=0.350 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 149 IATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 149 ~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
|+.++..+..++.+++....++..++...+.--.+-.+.|+|-+.|+..
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566666666655555555555555555555555665555443
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=59.90 E-value=1.5e+02 Score=30.05 Aligned_cols=8 Identities=0% Similarity=0.127 Sum_probs=3.1
Q ss_pred HHHHhHhh
Q 027898 179 ALKKQSEG 186 (217)
Q Consensus 179 aLKkQae~ 186 (217)
.++.+.+.
T Consensus 631 ~~r~~i~~ 638 (880)
T PRK02224 631 EKRERKRE 638 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 190
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.72 E-value=33 Score=29.12 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
.|-++||.....+.... ++++++|+|.......||-|...
T Consensus 56 ~eEe~LKs~~q~K~~~a----anL~~lr~Ql~emee~~~~llrQ 95 (211)
T COG3167 56 AEEEELKSTYQQKAIQA----ANLEALRAQLAEMEERFDILLRQ 95 (211)
T ss_pred HHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHHHHHh
Confidence 34445555554433322 46688888888888888877543
No 191
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.72 E-value=1.2e+02 Score=34.04 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANA 172 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~ 172 (217)
++-+.=++.|.--|+-.+-..+..+++.++.+.++..+.+. .|..-...+..+..++-.....+++
T Consensus 677 l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~--------------~i~~~~q~~~~~s~eL~~a~~k~~~ 742 (1822)
T KOG4674|consen 677 LEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQS--------------TISKQEQTVHTLSQELLSANEKLEK 742 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444444455555555544555555554444444333221 1111122333444445555555555
Q ss_pred HHHHHHHHHHhH
Q 027898 173 AKAEAEALKKQS 184 (217)
Q Consensus 173 ~~~d~~aLKkQa 184 (217)
++.++.+||+.-
T Consensus 743 le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 743 LEAELSNLKQEK 754 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 192
>PRK14160 heat shock protein GrpE; Provisional
Probab=58.69 E-value=34 Score=29.34 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=13.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.++++.+.+...|-|+..++++.+..
T Consensus 71 ~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 71 KKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555444433
No 193
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.52 E-value=59 Score=22.57 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
.+++...+..++..++.+...+..-++..++.+++...-+.+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444445556666666665555555
No 194
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.51 E-value=1.8e+02 Score=28.25 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.+..++..+...+.++..-...++.|..+-+....+++.|.+.|..+++++..
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~ 154 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLA 154 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777788999999999999999999999999888764
No 195
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=58.42 E-value=61 Score=22.63 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
..|+.|..++..|=+.|.+.++..+.+++.+
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888887777643
No 196
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=58.33 E-value=96 Score=26.83 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=21.4
Q ss_pred HHH--HHHHH-HHHHHH------HHHHHHHHHHHHHHHHHHH
Q 027898 88 MLE--ASLMG-FLLFLS------LMMDRLHHYIRELRLLRKA 120 (217)
Q Consensus 88 l~~--~YLtG-F~LFL~------lvI~r~~~li~~l~~l~~~ 120 (217)
|++ +||.| |+||++ |+=.|.-...+.|.++.+.
T Consensus 70 ~~~It~~llgs~slymfrwal~~lye~r~~r~~~~L~kLra~ 111 (251)
T COG5415 70 YLVITALLLGSGSLYMFRWALTKLYEFRNNRRLRKLAKLRAI 111 (251)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455 69999 888764 4555666666666666553
No 197
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.14 E-value=71 Score=24.88 Aligned_cols=52 Identities=31% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
.+..+|+.+|++.+.++..-+.++..==.+...| .+.|.+.|+++.+.++.+
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~L---l~~l~~~Y~~l~~Hla~~ 76 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQTAEL---LDNLTQDYQKLYQHLAKG 76 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
No 198
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.08 E-value=16 Score=25.95 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 179 ALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
.+-++..+...+|+||.++|++|.......
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~ 36 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRA 36 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHH
Confidence 455778888999999999999998777654
No 199
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=57.73 E-value=33 Score=24.18 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=8.2
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
+.|+.+...+.. .||+
T Consensus 48 ~~L~~ei~~l~~-~~rI 63 (85)
T TIGR02209 48 RDLQLEVAELSR-HERI 63 (85)
T ss_pred HHHHHHHHHHcC-HHHH
Confidence 555555555543 4443
No 200
>PHA01750 hypothetical protein
Probab=57.66 E-value=64 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.|++|.+.+..--|.+.+.-..++.+
T Consensus 45 dNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 45 DNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444444444444444444444444443
No 201
>PRK14160 heat shock protein GrpE; Provisional
Probab=57.33 E-value=48 Score=28.43 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
+.+++++|+.+++..+..+.++.+|++..||.+
T Consensus 66 l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 66 LKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 202
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.19 E-value=48 Score=29.40 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALK 181 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLK 181 (217)
.+..+++||..|++.|.++++.|-..+..+..||
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLK 259 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLK 259 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccC
Confidence 3455777888888888888887754444444444
No 203
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=57.17 E-value=39 Score=30.14 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=14.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.++...+.|..|..+..+-+++.+..++
T Consensus 56 ~~l~~~i~~L~~E~~~h~~~~~~v~~~L~ 84 (298)
T PF11262_consen 56 ERLKNLIDKLPEELKKHQEHVEKVKKRLQ 84 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444444444444
No 204
>PRK14163 heat shock protein GrpE; Provisional
Probab=57.15 E-value=31 Score=29.60 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 149 IATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 149 ~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
...+.++++.++.+++..+..+.++.+|++..||..+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888887777777788888888776543
No 205
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.10 E-value=67 Score=22.73 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECE 164 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~ 164 (217)
+.+..++++|+.+-.
T Consensus 21 ~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 21 ALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 206
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=56.96 E-value=1.1e+02 Score=26.27 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----HHHHHHHHHHHHHHHHHHhh
Q 027898 157 KKLESECEMKDKEANAAKAEAEALKKQSEG-----FLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~-----l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..+.|.+.+..+|++++.|..-++|++.+ ...--+...++.+..+..++
T Consensus 115 K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele 169 (223)
T cd07605 115 KDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELE 169 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 445566666666777777777777777664 33333444444444444443
No 207
>PRK14154 heat shock protein GrpE; Provisional
Probab=56.83 E-value=67 Score=27.46 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLL 189 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~ 189 (217)
..+..++++++.+++..+..+..+.+|++..||..+.-..
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e 94 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKA 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888888888888888888888887655433
No 208
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.20 E-value=38 Score=30.71 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 162 ECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 162 el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+++..+..+...+..+..+..+...++++|+....+.+.++.+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333445555555555555554444444433
No 209
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.03 E-value=1e+02 Score=31.75 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+..++..++.++..+-..++.+..+++.|.++..++.+|-.+...+...++++.+..
T Consensus 811 ~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~ 867 (970)
T KOG0946|consen 811 LQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFG 867 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhh
Confidence 344566777777777778888888899999999999988888877777777666644
No 210
>PRK15396 murein lipoprotein; Provisional
Probab=56.03 E-value=75 Score=22.95 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=6.2
Q ss_pred HHHHHHhHhhHHHH
Q 027898 177 AEALKKQSEGFLLE 190 (217)
Q Consensus 177 ~~aLKkQae~l~~E 190 (217)
+.+++..+..-..|
T Consensus 48 v~~~~~~~~~a~~e 61 (78)
T PRK15396 48 VNAMRSDVQAAKDD 61 (78)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555544443333
No 211
>PRK12704 phosphodiesterase; Provisional
Probab=55.94 E-value=2e+02 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
|+.+++.|.+.+.+++..++..+...++++....+++.+.
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~ 137 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666666667777766666554
No 212
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=55.89 E-value=1.3e+02 Score=25.66 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
++.+.++.+|+.....|+-++...+-.-.....|+++-|+|-+....
T Consensus 137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 34455556666555555555555555555555566666655544433
No 213
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=55.76 E-value=94 Score=24.04 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+-+.|.+.|.+.|-..+.+|+..|..
T Consensus 85 ~~~~q~~~L~~~f~~~m~~fq~~Q~~ 110 (151)
T cd00179 85 IRKTQHSGLSKKFVEVMTEFNKAQRK 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888777777777776644
No 214
>PRK11281 hypothetical protein; Provisional
Probab=55.51 E-value=1.5e+02 Score=31.67 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..+.+++.++.+.++++...++...++..|-|.-++.-..-...-+..+++++.
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444555555555555555555555555555555533444444556666654
No 215
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.25 E-value=1.5e+02 Score=26.22 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
|..+++.|+.+|....+++
T Consensus 86 Lq~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444
No 216
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=55.18 E-value=25 Score=25.96 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
..++.+|+.+++..+.++...+...+++++|.+-+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666777777777777766666667777776544
No 217
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.99 E-value=76 Score=27.76 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 027898 112 RELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 112 ~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel 170 (217)
.++..+++.++.++...+... .+...+.++++.+..+.++++.+|+..+.+.
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~-------~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQ-------KEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543322222 2344555666666666666666666555555
No 218
>PRK14153 heat shock protein GrpE; Provisional
Probab=54.92 E-value=36 Score=28.76 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
..+..++++++.+++..+..+..+.+|++..||..+.
T Consensus 36 ~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 36 STADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777667777777777777776553
No 219
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.66 E-value=2.4e+02 Score=28.55 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.+.-+++.|+.++.....++..++...+.+..-.++..++-+.|..|+..|+.++..
T Consensus 472 ~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~ 528 (716)
T KOG4593|consen 472 KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLER 528 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777777888888899998888888766653
No 220
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=54.61 E-value=1.3e+02 Score=27.34 Aligned_cols=88 Identities=25% Similarity=0.323 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhcCCCCchh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 027898 95 GFLLFLSLMMDRLHHYIRELRLLRKAMEAA----KKQTRSFEDGKNDNVD-ERKGLGDDIATLKTKIKKLESECEMKDKE 169 (217)
Q Consensus 95 GF~LFL~lvI~r~~~li~~l~~l~~~~~a~----~kQa~~~~~~~~~~~~-~~~~~~~~~~~l~~e~~~Lk~el~~~~ke 169 (217)
-|.=.-..++.|=++|+.++.+.+++.=.+ +++|+.... ..+ .......++.+|+++|+..-.+ .+.+++
T Consensus 190 ~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkr----ltd~A~~MsE~Ql~ELRadIK~fvs~-rk~de~ 264 (302)
T PF07139_consen 190 TFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKR----LTDRASQMSEEQLAELRADIKHFVSE-RKYDEE 264 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCHHHHHHHHHHHHHHhhh-hhhHHH
Confidence 455556678999999999999987764322 233333321 000 0111112333344444433222 245556
Q ss_pred HHHHHH---HHHHHHHhHhhH
Q 027898 170 ANAAKA---EAEALKKQSEGF 187 (217)
Q Consensus 170 l~~~~~---d~~aLKkQae~l 187 (217)
|.++.+ |.+.|++++.++
T Consensus 265 lg~~~rf~~d~~~l~~~i~~~ 285 (302)
T PF07139_consen 265 LGRAARFTCDPEQLKKSIMSF 285 (302)
T ss_pred HhHhhhcccCHHHHHHHHHhc
Confidence 655543 666777666554
No 221
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.40 E-value=76 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=14.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..+++....+..++.++.++...++++++.
T Consensus 378 ~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 378 KKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445555555555555555543
No 222
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.25 E-value=1.5e+02 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027898 100 LSLMMDRLHHYIRELRLLRKAMEAAKKQT 128 (217)
Q Consensus 100 L~lvI~r~~~li~~l~~l~~~~~a~~kQa 128 (217)
+-|+=.|+-.+=.++...+..+++.+++.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777777777777777777654
No 223
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=17 Score=30.04 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=19.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHH
Q 027898 176 EAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e 197 (217)
++-+||+|+|++..||..+.+|
T Consensus 146 evt~lk~qce~lleeyed~i~e 167 (190)
T KOG4052|consen 146 EVTALKQQCESLLEEYEDLIEE 167 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999888
No 224
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.73 E-value=1.7e+02 Score=30.99 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
...++-+++.+++|+.+..+++++++++.
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~ 334 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELK 334 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444455555454444444443
No 225
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.68 E-value=82 Score=31.85 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 173 AKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 173 ~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+.+.+.++.-++.|..-|++..+.++.|.++++
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333355555556666666666666555554443
No 226
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.56 E-value=41 Score=32.89 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 150 ATLKTKIKKLESECEMKDK----EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~k----el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..+.+.++.|+-++..-.+ .|..-++.+.-|+.||..+..||..|+|-...|+..++.
T Consensus 320 ~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 320 SALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAA 381 (546)
T ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHH
Confidence 3344556655555432222 333334555899999999999999999999888877663
No 227
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=53.10 E-value=1.9e+02 Score=29.42 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELR 115 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~ 115 (217)
.+.|+.-|+. +|+.++.+|+.-.
T Consensus 371 il~g~~~~~~-~id~~i~iir~~~ 393 (738)
T TIGR01061 371 IVEGLIKAIS-IIDEIIKLIRSSE 393 (738)
T ss_pred HHHHHHHHHH-hhhhHhHHHHcCC
Confidence 7999999998 8999999886544
No 228
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.09 E-value=46 Score=22.82 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=4.9
Q ss_pred HHHHHhHhhH
Q 027898 178 EALKKQSEGF 187 (217)
Q Consensus 178 ~aLKkQae~l 187 (217)
+.|+.+.+.+
T Consensus 41 ~~L~~ei~~l 50 (80)
T PF04977_consen 41 EELKEEIERL 50 (80)
T ss_pred HHHHHHHHHh
Confidence 4455554444
No 229
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=53.01 E-value=1.2e+02 Score=24.53 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-----HHHHHHHHHHHHHHHHHhh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF-----LLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l-----~~EYdrL~~e~~~l~~~~~ 206 (217)
.+.+.++..++...+.+..+..+....|+.|...+ -..||+..++.+.++..+.
T Consensus 104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~ 162 (177)
T PF13870_consen 104 EEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIK 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555556666666553 3568888888777776655
No 230
>PRK11519 tyrosine kinase; Provisional
Probab=52.46 E-value=1.5e+02 Score=29.76 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 173 AKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 173 ~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
.+.+...|+.+.+..+.-|+.++...++++-+
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~ 399 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555667777777777777777777766533
No 231
>PRK14153 heat shock protein GrpE; Provisional
Probab=52.32 E-value=47 Score=28.05 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=18.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+++|++.+...|-|+..|.++.+...+
T Consensus 43 ~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 43 EKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655544
No 232
>PLN02678 seryl-tRNA synthetase
Probab=52.17 E-value=67 Score=30.59 Aligned_cols=25 Identities=20% Similarity=-0.015 Sum_probs=14.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
..|++|.+.++.+++.+.++...+-
T Consensus 81 ~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 81 KELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655555443
No 233
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=51.26 E-value=1.1e+02 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=13.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 183 QSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 183 Qae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+...+...|..+.++.+.++.++.
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556555555555554
No 234
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=51.18 E-value=38 Score=33.41 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=41.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 144 GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEA-----LKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 144 ~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~a-----LKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.....++.+...+++++.+|.+.+.++..+.++... =++-.|...+-++||.+..+++.-|...
T Consensus 633 ~h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~d 701 (759)
T KOG0981|consen 633 THEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTD 701 (759)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccc
Confidence 333445567777888888888887777777554221 1234566677777887777777666553
No 235
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=51.04 E-value=92 Score=22.51 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
...+-|.+-|.++|.+.+.+++++|....
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~ 95 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999987654
No 236
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=50.74 E-value=51 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=8.8
Q ss_pred HHHHHHHhccc-hh
Q 027898 13 MALIMTLLFKT-PL 25 (217)
Q Consensus 13 m~~~llLvlPl-P~ 25 (217)
++++.+-|+|+ |.
T Consensus 120 ~~v~a~~lFPlWP~ 133 (224)
T PF03839_consen 120 VGVIAICLFPLWPR 133 (224)
T ss_pred HHHHHHHhhhcChH
Confidence 45557778886 74
No 237
>COG5393 Predicted membrane protein [Function unknown]
Probab=50.62 E-value=92 Score=24.47 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027898 50 GTLFIVLMSSVYSILKIQ 67 (217)
Q Consensus 50 ~~l~llF~Dsi~~~~k~~ 67 (217)
.++.+-.+-|++++++-.
T Consensus 91 vl~vl~~i~ciW~lrks~ 108 (131)
T COG5393 91 VLLVLALIGCIWTLRKSR 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444556788887644
No 238
>PRK04863 mukB cell division protein MukB; Provisional
Probab=50.51 E-value=2e+02 Score=31.72 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
+++++..+++....++...+.+.+.+..+.+.++.+.+.+
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333333333333333
No 239
>PRK05560 DNA gyrase subunit A; Validated
Probab=50.35 E-value=2.3e+02 Score=28.96 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELR 115 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~ 115 (217)
.+.|+..| ...|..++.+|+.--
T Consensus 374 ~l~g~~~~-~~~~d~vI~iir~s~ 396 (805)
T PRK05560 374 ILEGLLIA-LDNIDEVIALIRASP 396 (805)
T ss_pred HHHHHHHH-HHhhHHHHHHHHcCC
Confidence 89999998 457777877776533
No 240
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=50.09 E-value=2.5e+02 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 027898 112 RELRLLRKAMEAAKKQTRSFE 132 (217)
Q Consensus 112 ~~l~~l~~~~~a~~kQa~~~~ 132 (217)
++.+.+.++.+++.++...++
T Consensus 434 SKa~~f~~Ec~aL~~rL~~aE 454 (518)
T PF10212_consen 434 SKAVHFYAECRALQKRLESAE 454 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655443
No 241
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=50.08 E-value=1.4e+02 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.258 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELR 115 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~ 115 (217)
.+-+|.+|++++=.-...-|....
T Consensus 10 q~I~FlIll~ll~kfawkPI~~~L 33 (154)
T PRK06568 10 LAVSFVIFVYLIYRPAKKAILNSL 33 (154)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 566777777763333344444333
No 242
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.06 E-value=1.1e+02 Score=30.23 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+++++|+.+|+....++...+.+.+.++.+...+..+..+...+.+.+..++
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555544444444433
No 243
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.83 E-value=36 Score=23.76 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=24.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 177 AEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 177 ~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+.+|-.+.+.|-.-|.+|..||..|+.++..
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888899999998888877664
No 244
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=49.69 E-value=32 Score=23.65 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=25.8
Q ss_pred HHHHHHHHh----HhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 175 AEAEALKKQ----SEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 175 ~d~~aLKkQ----ae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+++.=|+.| ..||..|-.+|..++..|+-++.+.
T Consensus 10 ~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m~ 47 (60)
T PF14916_consen 10 KSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLIMK 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeec
Confidence 333555555 5688999999999999998888865
No 245
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=49.49 E-value=1.6e+02 Score=24.77 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 157 KKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
++|..+|...+..+..++..+..|.+|++-.++.|.|-
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555555555555577777777766666543
No 246
>PRK14144 heat shock protein GrpE; Provisional
Probab=49.47 E-value=50 Score=28.07 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
..+.+++++++.+++..+..+..+.+|++..|+.++.
T Consensus 48 ~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 48 TALEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888777777888888888876554
No 247
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=49.43 E-value=1.9e+02 Score=25.63 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHH-Hhhhccc-hHHHHHHHHHHHHH-HHHHHHHHHhhhhhccccCCCChHHHHHHHHHHHH-----------HHHH
Q 027898 29 VIMSLD-RVKRGRG-PVVVKTVGGTLFIV-LMSSVYSILKIQQRTLETGALNPTDQILMSKHMLE-----------ASLM 94 (217)
Q Consensus 29 ~~~~l~-~~~~~~~-~~~~~~~~~~l~ll-F~Dsi~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~-----------~YLt 94 (217)
+..+++ .++.+.+ +.++.+.+.++++. ++-++.-++|.. .|....-..|++... --+|
T Consensus 59 va~f~E~~~~~~~g~p~~~sl~~~~I~l~~l~Ha~lalrk~P--------~n~~q~~~~r~h~~~m~H~DT~lW~~Q~iT 130 (258)
T PRK13553 59 VAKFFEGSFFFKAGEPALVSFVAAGVILIFVVHAFLAMRKFP--------INYRQYQIFRTHKHLMKHGDTSLWFIQAFT 130 (258)
T ss_pred HHHHHhhCccccCCcchhHHHHHHHHHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHhhccCCccchHHHHHHH
Confidence 345555 3443332 55555555555544 446666665543 233222233333111 1579
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027898 95 GFLLFLSLMMDRLHHYIR 112 (217)
Q Consensus 95 GF~LFL~lvI~r~~~li~ 112 (217)
||++|+...+ -+..++.
T Consensus 131 G~ilf~~~~~-Hl~~i~~ 147 (258)
T PRK13553 131 GFAMFFLASV-HLYVMLT 147 (258)
T ss_pred HHHHHHHHHH-HHHhhhc
Confidence 9999987544 3444444
No 248
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=49.37 E-value=15 Score=26.31 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc-chh-HHH
Q 027898 3 QLLYTVIFSQMALIMTLLFK-TPL-RKL 28 (217)
Q Consensus 3 ~lvf~~L~~Em~~~llLvlP-lP~-R~~ 28 (217)
...+....+=.++.+++++| +|+ +|+
T Consensus 35 ~~~~~~~~~g~~~~~lv~vP~Wp~y~r~ 62 (76)
T PF06645_consen 35 SYTFYIYGAGVVLTLLVVVPPWPFYNRH 62 (76)
T ss_pred HHHHHHHHHHHHHHHhheeCCcHhhcCC
Confidence 34555666677888888888 685 444
No 249
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.37 E-value=53 Score=25.13 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=5.4
Q ss_pred HHHHHHHHH
Q 027898 26 RKLVIMSLD 34 (217)
Q Consensus 26 R~~~~~~l~ 34 (217)
=|+.+..+|
T Consensus 11 DWr~i~~iD 19 (118)
T PF13815_consen 11 DWRLISAID 19 (118)
T ss_pred cHHHHhccC
Confidence 376666655
No 250
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=49.26 E-value=21 Score=31.77 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 81 QILMSKHMLEASLMGFLLFLSLMMDRLHHY 110 (217)
Q Consensus 81 ~~~~~~~l~~~YLtGF~LFL~lvI~r~~~l 110 (217)
.++||.||+=-|| +||++|+|+-+.-.
T Consensus 164 nylARNFYNlr~l---ALflAFaINFILLF 190 (274)
T PF06459_consen 164 NYLARNFYNLRFL---ALFLAFAINFILLF 190 (274)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4789999987777 69999999866433
No 251
>smart00338 BRLZ basic region leucin zipper.
Probab=49.15 E-value=80 Score=21.25 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=18.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
..|..+-..|..+.+.|..++..+.+++
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666554
No 252
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=49.06 E-value=85 Score=28.16 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 164 EMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 164 ~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+..+..+.+.+..++.-|.....|.+|--+|.+.
T Consensus 42 eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~ 75 (307)
T PF10481_consen 42 ESLEAALQKQKQKVEEEKNEYSALKRENQSLMES 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 3333333333333333333333333333333333
No 253
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.88 E-value=51 Score=23.49 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
++.++..|+.+++.+++.+
T Consensus 48 LKve~~~L~~el~~~~~~l 66 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLL 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 254
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.60 E-value=87 Score=30.66 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
+|.++..+++.|+++.+.-...+..+..+.+.
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~ 244 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQN 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554445444444443
No 255
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.42 E-value=78 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=7.4
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
+.+.+|.+.+++.+..+
T Consensus 84 ~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 84 KTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 256
>PRK15396 murein lipoprotein; Provisional
Probab=48.41 E-value=1e+02 Score=22.25 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
+..+++.|+.+..+...+...++.++++-+..++.-+.--|
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555544443333
No 257
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.19 E-value=2.6e+02 Score=26.81 Aligned_cols=55 Identities=20% Similarity=0.075 Sum_probs=40.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 144 GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 144 ~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
....+++.++..+..|+...++...+..+....+++++-|..-.++.|-|..+..
T Consensus 308 qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 308 QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777777778888888888888887766554
No 258
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.18 E-value=2.3e+02 Score=26.21 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.+++.+-.+......++..++......-.-...++.++.++.++.++.+.+++.
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555556666778888888888888877763
No 259
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.73 E-value=1.6e+02 Score=28.55 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
++..++..++.+..-.|....+....||+++|.
T Consensus 460 ~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 460 EKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554444453333333455555554
No 260
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=47.71 E-value=1.6e+02 Score=29.33 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+.+|-+....||.|...++.-|-.|+.++-.+.+.++
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq 191 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQ 191 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHH
Confidence 44455555567777777777777777776644444333
No 261
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=47.68 E-value=1.4e+02 Score=23.68 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDR 106 (217)
Q Consensus 93 LtGF~LFL~lvI~r 106 (217)
+..|.+||+++..-
T Consensus 8 ~i~f~i~l~~l~~~ 21 (159)
T PRK09173 8 FVGLVLFLALVVYL 21 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 44577777766554
No 262
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.38 E-value=1.6e+02 Score=28.55 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
.+...+.+.+.|+++.+.+.++|..+..+..+.+.+
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446678899999999999998888777666544
No 263
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.98 E-value=2.8e+02 Score=28.44 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
++..|..+.+....++......++.+.-+.+.++.++|...++..+|+..|+.
T Consensus 115 q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~ 167 (775)
T PF10174_consen 115 QFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQS 167 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444666677777777777777777777776653
No 264
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=46.98 E-value=1.4e+02 Score=23.40 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
.|+.+|+..|.+.+.++ +.++.|...|. -|+|..|-
T Consensus 67 ~ei~~Le~kIs~q~~e~-------~dlkqeV~dLs-s~eRIldi 102 (120)
T COG4839 67 GEITDLESKISEQKTEN-------DDLKQEVKDLS-SPERILDI 102 (120)
T ss_pred hHHHHHHHHHHHHHhhh-------hhHHHHHHHhc-cHHHHHHH
Confidence 34444444444444444 55566655552 35565543
No 265
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=46.76 E-value=1.2e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=21.5
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 182 KQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 182 kQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
++..+++.+-+.+.+|.+.|+.+++..
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888887753
No 266
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.73 E-value=1e+02 Score=23.23 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=7.2
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
+.++.+-+.|..+-++|
T Consensus 44 ~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 44 AKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444444
No 267
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.29 E-value=1e+02 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..|++||..+...+..+ .+.++.+.....+|+.-.......|..++.
T Consensus 32 s~Ie~LK~~i~~~E~~l-------~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDEL-------EAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888887777777 666666666777888887777777766653
No 268
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.27 E-value=2.6e+02 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
+.+...|+.+.+..++-|+.+.+.++..+
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777655
No 269
>PRK14141 heat shock protein GrpE; Provisional
Probab=46.20 E-value=51 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
+.++++.|+.+++..+..+..+.+|++.+||..+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888888888999988887654
No 270
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=45.81 E-value=94 Score=22.66 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHH
Q 027898 3 QLLYTVIFSQMALIMTLLFKTP------LRKLVIMSLDR 35 (217)
Q Consensus 3 ~lvf~~L~~Em~~~llLvlPlP------~R~~~~~~l~~ 35 (217)
++.-.++|+=++.+-++|+|.- .||..-+.+++
T Consensus 14 ~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er 52 (81)
T PF10716_consen 14 TLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFER 52 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888899999999973 37876665553
No 271
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=3.4e+02 Score=27.52 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhh
Q 027898 193 RLLADNQHLRNQLES 207 (217)
Q Consensus 193 rL~~e~~~l~~~~~~ 207 (217)
|+-+|+.+|+..+..
T Consensus 605 rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 605 RLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 272
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.73 E-value=2.6e+02 Score=26.24 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 027898 186 GFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 186 ~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.|+.+++-..+-|+.+..+++
T Consensus 359 ~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 359 QLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444344444444443
No 273
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=45.54 E-value=2e+02 Score=24.79 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
|...|...+.++.++...+..+......++++|+++....++++++
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444666666666777787777777776654
No 274
>PLN02678 seryl-tRNA synthetase
Probab=45.53 E-value=1.5e+02 Score=28.25 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 104 MDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~ 125 (217)
|.++..+=.+...+..+++.++
T Consensus 32 id~il~ld~~~r~l~~~~e~lr 53 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLR 53 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444444
No 275
>PRK14146 heat shock protein GrpE; Provisional
Probab=45.29 E-value=60 Score=27.83 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
.+..++++++.+++..+..+.++.+|++..|+.++.
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777776543
No 276
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.28 E-value=2.9e+02 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 162 ECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 162 el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+|+.++++|...+.+++..+++.+.+..+++++.++
T Consensus 98 ~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 98 SLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554444
No 277
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=45.25 E-value=29 Score=27.72 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
.+++.++.+++.....+....++++.+++..
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444445444443
No 278
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=45.24 E-value=94 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=14.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+-++.+.++.+.+.+.++-+.+...++
T Consensus 601 ~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 601 TACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554444
No 279
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=45.18 E-value=2.3e+02 Score=25.47 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+..+..+..+.+.....-..+.+++..++.++..
T Consensus 113 q~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~ 146 (309)
T PF09728_consen 113 QATLKDIQAQMEEQSERNIKLREENEELREKLKS 146 (309)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 3344555666666666666677777666666553
No 280
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=44.94 E-value=2.3e+02 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLE 190 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~E 190 (217)
|...+.||..++++...-..|..|+.++
T Consensus 167 l~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 167 LVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 5566667777776666666666666544
No 281
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.82 E-value=3.8e+02 Score=27.84 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
.++..+...++|.++.-.+.++++.|.+.+..+|+..
T Consensus 546 ~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 546 AIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4555555666666666666677777777776666543
No 282
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=44.77 E-value=2.1e+02 Score=28.45 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.+++..++..++.++.++.......+....+...-..+|-.+..+.+.|..+
T Consensus 207 l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 207 LQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555656655555554444544555555566677777777766544
No 283
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=44.65 E-value=1.2e+02 Score=22.98 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
+|.-++++.++...+.++.....+=-|.|.-|.|.+-|..|
T Consensus 78 ee~~emkkdleaankrve~q~ekiflmekkfe~lekkyesl 118 (122)
T PF05325_consen 78 EETIEMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYESL 118 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 34444555555444444333222334555666666666555
No 284
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.55 E-value=2.8e+02 Score=26.29 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
.|+-.+=.++...+..+....++...... +.+....+++++..++.+....+++.++.|...+....+|..|-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~-------~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEK-------QLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55566666666666666665544333321 22222233333344444444444444444444444444444443
No 285
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.39 E-value=1.5e+02 Score=27.79 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=7.2
Q ss_pred HHHHhHhhHHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e 197 (217)
.++.++..+.++-..+.++
T Consensus 70 ~l~~~~~~l~~~~~~~~~~ 88 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAE 88 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 286
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.36 E-value=65 Score=28.98 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=13.2
Q ss_pred HHHHHhHhhHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~ 195 (217)
+.||.|+..+.+|.+.|.
T Consensus 265 ~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 265 EELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777663
No 287
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.33 E-value=50 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEA 170 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel 170 (217)
.+|+.+|+.+|++.+.+|
T Consensus 6 ~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 6 QEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444554444443333
No 288
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=43.89 E-value=3.8e+02 Score=27.53 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.9
Q ss_pred HHHHHhHhhH
Q 027898 178 EALKKQSEGF 187 (217)
Q Consensus 178 ~aLKkQae~l 187 (217)
..|++.++||
T Consensus 395 ~~Lq~kie~L 404 (775)
T PF10174_consen 395 NVLQKKIENL 404 (775)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 289
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.81 E-value=4.5e+02 Score=28.39 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+..++++|+.+++....+++..+.+..-+....+.++.+|+++..+
T Consensus 886 le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS 931 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555554433
No 290
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=43.78 E-value=2.2e+02 Score=24.71 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
..++++++..++++..+..+++.+-..--.+....+..|.+-.+.
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~ 211 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQ 211 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 467889999999888888888888887777777777777655444
No 291
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.65 E-value=89 Score=23.18 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=11.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
+.+.+|.+.++++...+..+..+
T Consensus 80 ~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 80 KRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444333
No 292
>PRK14156 heat shock protein GrpE; Provisional
Probab=43.60 E-value=62 Score=26.95 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+..++++++.+++..+..+.++.+|++..||..+.-
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE 67 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEE 67 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777777778888777765543
No 293
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.59 E-value=3.5e+02 Score=27.05 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027898 105 DRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~ 125 (217)
..+..+-.++..++.++..+.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~ 308 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLS 308 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666665554443
No 294
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.15 E-value=43 Score=30.97 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhccc-hh
Q 027898 5 LYTVIFSQMALIMTLLFKT-PL 25 (217)
Q Consensus 5 vf~~L~~Em~~~llLvlPl-P~ 25 (217)
++++++ =.+++.+-|+|+ |.
T Consensus 192 vl~~~f-vl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 192 VLGVLF-VLVTLAIVLFPLWPR 212 (372)
T ss_pred HHHHHH-HHHHHHHHhcccCcH
Confidence 334433 245566677886 85
No 295
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.11 E-value=1.4e+02 Score=22.41 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 027898 166 KDKEANAAKAEAEALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 166 ~~kel~~~~~d~~aLKkQae~l~~EYdrL~~ 196 (217)
.+.++...+-+..++..+.++++.==+.|.|
T Consensus 70 L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 70 LQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333335555555555444444433
No 296
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.07 E-value=50 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.||.|+..|...-.+|-.|++-|++.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555666666666554
No 297
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=43.07 E-value=2.2e+02 Score=27.44 Aligned_cols=38 Identities=34% Similarity=0.379 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
.++++..+.+..+++...++.++.-++.++++.....+
T Consensus 373 ~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 373 ALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333443334444444444444443333
No 298
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.87 E-value=1.2e+02 Score=29.84 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 144 GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 144 ~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
++...++++.+..++++.|+. .|...+.+.+.|++|.+.+..+|+..+.+....|.+.
T Consensus 315 KY~~~~~~l~~~~~~~~~el~----~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 315 KYGVTIEDLLEYLDKIKEELA----QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HhCCCHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343334444455566666665 4555566679999999999999999988887666543
No 299
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.87 E-value=53 Score=26.62 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 027898 187 FLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 187 l~~EYdrL~~e~~~l~~~~~ 206 (217)
+++..|.+.+|.++++++..
T Consensus 71 l~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444433
No 300
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=42.68 E-value=1.2e+02 Score=29.97 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLL-EYDRLLADNQH 200 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~-EYdrL~~e~~~ 200 (217)
+.+++++.++++.+++++..+++...+.++...+.. .|+.+..+.+.
T Consensus 215 ~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 262 (646)
T PRK05771 215 ELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777776666665555555666665555544 45555444433
No 301
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=42.60 E-value=3.9e+02 Score=27.38 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQ 127 (217)
.+.+|+-=+++++..+++--..+.........++++
T Consensus 534 dLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~ 569 (769)
T PF05911_consen 534 DLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKN 569 (769)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHh
Confidence 444454444444444444333333333333334333
No 302
>COG1422 Predicted membrane protein [Function unknown]
Probab=42.51 E-value=1.4e+02 Score=25.49 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 98 LFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSF 131 (217)
Q Consensus 98 LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~ 131 (217)
|-.+.++.-..+++..+..-++.+++++|.++.-
T Consensus 51 lV~avi~gl~~~i~~~~liD~ekm~~~qk~m~ef 84 (201)
T COG1422 51 LVAAVITGLYITILQKLLIDQEKMKELQKMMKEF 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3344444445566666676677777776664443
No 303
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.21 E-value=3.2e+02 Score=26.27 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=17.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
-.|+.=-+|+..|-.| .|.+.++.+|...
T Consensus 293 ~rl~elreg~e~e~~r--kelE~lR~~L~kA 321 (575)
T KOG4403|consen 293 PRLSELREGVENETSR--KELEQLRVALEKA 321 (575)
T ss_pred hhhhhhhcchhHHHHH--HHHHHHHHHHHHH
Confidence 3444444466666555 5777777777654
No 304
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.09 E-value=1.4e+02 Score=22.08 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 027898 186 GFLLEYDRL 194 (217)
Q Consensus 186 ~l~~EYdrL 194 (217)
.+.+.++.+
T Consensus 81 ~l~~~~~~l 89 (105)
T cd00632 81 RLERQEEDL 89 (105)
T ss_pred HHHHHHHHH
Confidence 333333333
No 305
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.69 E-value=1.5e+02 Score=29.97 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..+.+..+.+...-..|+.-+|-.=..+-.+|..|-+|+-.||+|+.
T Consensus 67 ~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 67 LRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333333333333333334444444445566677777777777777654
No 306
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=41.65 E-value=1.5e+02 Score=22.25 Aligned_cols=19 Identities=26% Similarity=0.453 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027898 94 MGFLLFLSLMMDRLHHYIR 112 (217)
Q Consensus 94 tGF~LFL~lvI~r~~~li~ 112 (217)
..|.++++++-+-++.=+.
T Consensus 7 i~Flil~~~l~~~~~~pi~ 25 (132)
T PF00430_consen 7 INFLILFFLLNKFLYKPIK 25 (132)
T ss_dssp HHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444444
No 307
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.53 E-value=1.9e+02 Score=30.05 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027898 187 FLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 187 l~~EYdrL~~e~~~l~~~ 204 (217)
++.+|..+++|.+.+.++
T Consensus 181 ~~~q~~tkl~e~~~en~~ 198 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKA 198 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444443
No 308
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=41.40 E-value=1.8e+02 Score=27.31 Aligned_cols=66 Identities=24% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 112 RELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 112 ~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
.+-+..++..++.+.|++-+. ...--.+|-..+++|-+.|.+|++++++++ +.++.|..--++..
T Consensus 322 kek~~KEAqareaklqaec~r--------Q~qlaLEEKaaLrkerd~L~keLeekkrel-------eql~~q~~v~~saL 386 (442)
T PF06637_consen 322 KEKAGKEAQAREAKLQAECAR--------QTQLALEEKAALRKERDSLAKELEEKKREL-------EQLKMQLAVKTSAL 386 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHH
Q ss_pred H
Q 027898 192 D 192 (217)
Q Consensus 192 d 192 (217)
|
T Consensus 387 d 387 (442)
T PF06637_consen 387 D 387 (442)
T ss_pred H
No 309
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=41.39 E-value=74 Score=23.42 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 027898 157 KKLESECEMKDKEANAAKAEAEALKKQSEGFL 188 (217)
Q Consensus 157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~ 188 (217)
++|+.+++..++++..++.....|+-|...+.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444455555555553
No 310
>PLN02320 seryl-tRNA synthetase
Probab=41.29 E-value=1.1e+02 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=9.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~ 198 (217)
..||++...+..+...+.++.
T Consensus 140 k~lk~~i~~le~~~~~~~~~l 160 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 311
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.18 E-value=3e+02 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=6.1
Q ss_pred HHHHHhHhhHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDR 193 (217)
Q Consensus 178 ~aLKkQae~l~~EYdr 193 (217)
..+..+.+++..+...
T Consensus 688 ~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 688 NELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 312
>PRK14143 heat shock protein GrpE; Provisional
Probab=41.12 E-value=85 Score=27.36 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=15.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.++++.+.+...|-|+..+.++.++...
T Consensus 77 ~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 77 ESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666555554443
No 313
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.91 E-value=1.3e+02 Score=23.88 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=11.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+.|+.-...+..|-|-+...|+.|++
T Consensus 91 ~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 91 EKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444445555543
No 314
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=40.89 E-value=1.1e+02 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFL 188 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~ 188 (217)
.|..+++.+..|......++++++...+.++
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444477777666553
No 315
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.76 E-value=2.3e+02 Score=24.14 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=14.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 176 EAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+...+-++.+...+.|+..+.+.+.++++.
T Consensus 114 ~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~ 143 (239)
T cd07647 114 NKKELYKKTMKAKKSYEQKCREKDKAEQAY 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555554443
No 316
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=40.74 E-value=1.4e+02 Score=25.09 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++-.++.++...++-. ..|++..+.|..|+..+.++...++..++
T Consensus 9 ~~L~~lk~rl~~a~rg~-------~lLk~Krd~L~~e~~~~~~~~~~~r~~~~ 54 (209)
T TIGR00309 9 MELLKLKDKLKMAKRGY-------SLLKLKRDALIMEFRQILERAKDIKNKME 54 (209)
T ss_pred HHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444 77888888888887777777777666655
No 317
>PHA02669 hypothetical protein; Provisional
Probab=40.65 E-value=79 Score=26.30 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027898 91 ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRS 130 (217)
Q Consensus 91 ~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~ 130 (217)
.||||.+.||.+=|---.--.++-.+.+++++.+..|.-|
T Consensus 14 i~LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLatQLGn 53 (210)
T PHA02669 14 IYLTGAAIYLLIEIGLAAERANKRSRVKANMRKLATQLGN 53 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5999999999988877666677777777887777777444
No 318
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.65 E-value=1.9e+02 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 104 MDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~ 125 (217)
+.++..+=.+...+..+++.++
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~ 50 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQ 50 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544
No 319
>PRK14157 heat shock protein GrpE; Provisional
Probab=40.56 E-value=73 Score=27.65 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+..++++++.+++..+..+....+|++..||.++.-
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE 117 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKE 117 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888876543
No 320
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.43 E-value=1.3e+02 Score=30.94 Aligned_cols=57 Identities=28% Similarity=0.363 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
++|..++.+|...|...+-++.+++..++.+.+|.+---.|.|.|..+.+++|+.+.
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555566677778888888888888888877776666665544
No 321
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=40.11 E-value=1.5e+02 Score=24.78 Aligned_cols=46 Identities=17% Similarity=0.461 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++-.++.++...++-. ..||+..+.|..|+..+.++...++..++
T Consensus 11 ~~L~~lk~~l~~a~rg~-------~lLk~Krd~L~~e~~~~~~~~~~~r~~~~ 56 (204)
T PRK00373 11 MELINLKRRLKLAERGH-------KLLKDKRDELIMEFFDILDEAKKLREEVE 56 (204)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444 66777777777777666666666655554
No 322
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=40.06 E-value=4.9e+02 Score=27.75 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
++.+++-|...+.++..-.+.+.-+|.|.......|.-+....+.|
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeL 535 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEEL 535 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555666666666666555444433333
No 323
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=39.96 E-value=2.2e+02 Score=23.72 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=9.1
Q ss_pred HHHHHhHhhHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e 197 (217)
...+.+.+....+|+.+..+
T Consensus 116 ~~~~~~l~~~~~e~~~~~~~ 135 (201)
T PF12072_consen 116 EQRKEELEEREEELEELIEE 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333355555555544333
No 324
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=39.66 E-value=3.6e+02 Score=26.09 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
..+..|..-+...++.|...+++.++|.-|.+.....|-+|.++|-
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4456677777777788888888889999999999999999999985
No 325
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=39.58 E-value=74 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEA 179 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~a 179 (217)
+.+.++.|+++|...+.++.++++....
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888777777666555443
No 326
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=39.52 E-value=2.1e+02 Score=23.38 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-HHHHHHHHHHHHHHhh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE-YDRLLADNQHLRNQLE 206 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E-YdrL~~e~~~l~~~~~ 206 (217)
+++++.|+..++.....-+-.-+|+-.++.|...-..- -+.|.++-.+++.-.+
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~e 132 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVE 132 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444443333344445555554443332 4455444444444333
No 327
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.40 E-value=3.4e+02 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=11.8
Q ss_pred HHHHHHhHhhH---HHHHHHHHHHHH
Q 027898 177 AEALKKQSEGF---LLEYDRLLADNQ 199 (217)
Q Consensus 177 ~~aLKkQae~l---~~EYdrL~~e~~ 199 (217)
--.|+||..+| |=||..|.-|..
T Consensus 179 NIsLQKqVs~LR~sQVEyEglkheik 204 (772)
T KOG0999|consen 179 NISLQKQVSNLRQSQVEYEGLKHEIK 204 (772)
T ss_pred cchHHHHHHHHhhhhhhhhHHHHHHH
Confidence 34666666554 445554443333
No 328
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.37 E-value=3e+02 Score=29.90 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+...+++||.+..+-..+.+.+++.+.+.|.||.+-+...+.|.+.++...+-++
T Consensus 1624 L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1624 LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555665555555566677777788888888888888877666665444333
No 329
>PRK00106 hypothetical protein; Provisional
Probab=39.21 E-value=3.6e+02 Score=26.36 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
|++++++|...+.+++..+++.+...++|+.+.++
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~ 154 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455555555555555554444
No 330
>PHA00024 IX minor coat protein
Probab=39.21 E-value=40 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 89 LEASLMGFLLFLSLMM 104 (217)
Q Consensus 89 ~~~YLtGF~LFL~lvI 104 (217)
+-+|+.||+|+..+..
T Consensus 9 fgA~ilG~~l~~~Il~ 24 (33)
T PHA00024 9 FGAYILGWALFYGILV 24 (33)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4589999999998543
No 331
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.15 E-value=2.3e+02 Score=23.63 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKK 182 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk 182 (217)
++..-..+=.++...+...+.+.++|+.+-..+ ..+-+............++..++..+......+.+.+.++..|+.
T Consensus 49 ~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 49 VMANQKRLERKLDEAEEEAEKWEKQAELALAAG--REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666667777777777766664321 111111111111223334444554444444444444444444444
Q ss_pred hHhhHHHHHHHHHHHHH
Q 027898 183 QSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 183 Qae~l~~EYdrL~~e~~ 199 (217)
+...+...-+.|...++
T Consensus 127 kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 127 KLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 332
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=38.95 E-value=50 Score=19.33 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIR 112 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~ 112 (217)
-|+|..|.+.+..+-++.++.
T Consensus 5 vi~g~llv~lLl~YLvYAL~n 25 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999998888764
No 333
>PF14282 FlxA: FlxA-like protein
Probab=38.91 E-value=1.7e+02 Score=22.02 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 147 DDIATLKTKIKKLESECEMKDK----EANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~~k----el~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
..|..|...++.|+.+|..... .-+..+.-.+.|..|+..|+...-++..+.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666554433 111223334566666666666665554443
No 334
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.64 E-value=3.1e+02 Score=25.03 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=46.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH--------------HHHHHHHHHHHHHhhh
Q 027898 142 RKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY--------------DRLLADNQHLRNQLES 207 (217)
Q Consensus 142 ~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY--------------drL~~e~~~l~~~~~~ 207 (217)
......+++.+..+++.|+.++...-.|.+-...|.++.|-.+..|+.|- |.|+.|+--|+.++..
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q 207 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQ 207 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 33444455556666667777777776777777889999999999998885 6777777666655553
No 335
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.33 E-value=3.4e+02 Score=26.18 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 104 MDRLHHYIRELRLLRKAMEAAKKQTRSF 131 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~kQa~~~ 131 (217)
+.++-.+=.++..+..+.+.++++.+..
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555443333
No 336
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.25 E-value=2.1e+02 Score=26.81 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 027898 112 RELRLLRKA 120 (217)
Q Consensus 112 ~~l~~l~~~ 120 (217)
.+++.+-..
T Consensus 30 d~i~~ld~~ 38 (418)
T TIGR00414 30 EKLIALDDE 38 (418)
T ss_pred HHHHHHHHH
Confidence 333333333
No 337
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.15 E-value=5.3e+02 Score=27.62 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
++++.++..++..+.+...+...+..++.+...+..+.|...++...+
T Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 516 (1201)
T PF12128_consen 469 EQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQA 516 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544444433
No 338
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=93 Score=26.08 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSE 185 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae 185 (217)
.+++++|+.+++..+....++.+|++.++++++
T Consensus 42 ~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~ 74 (193)
T COG0576 42 QQEIAELEAQLEELKDKYLRAQAEFENLRKRTE 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888777777777788888777654
No 339
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.08 E-value=1.4e+02 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=9.1
Q ss_pred HHHHHhHhhHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~ 195 (217)
+.|+++.+.+.+.+..+.
T Consensus 79 ~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 79 KKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555444443
No 340
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.01 E-value=1.3e+02 Score=22.72 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=15.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+.++.+.++..+..+.++.+.++..++
T Consensus 96 ~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 96 EELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555554443
No 341
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.00 E-value=2.8e+02 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
.+....+|+.|+..++.|++..+.....|+++...+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666655444
No 342
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.98 E-value=3e+02 Score=24.72 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 161 SECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 161 ~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
.++...+.++..++.+...++.+.+..+.++
T Consensus 203 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 203 RERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444333
No 343
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=37.69 E-value=1.6e+02 Score=26.45 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 027898 54 IVLMSSVYSILKIQQRTL 71 (217)
Q Consensus 54 llF~Dsi~~~~k~~~~~~ 71 (217)
+-|.--++|+..||..++
T Consensus 164 Is~~~~IkRVFQYHGAEH 181 (318)
T COG3872 164 ISFTPDIKRVFQYHGAEH 181 (318)
T ss_pred HhccHHHHHHHHhcCccc
Confidence 345566799999987543
No 344
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.64 E-value=1.9e+02 Score=22.25 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
.+++.|.+|.+.+++.+..+.+....+..+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333666666666666666555554444443
No 345
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.63 E-value=1.9e+02 Score=22.35 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
++-|+..++..++.+ +.+.++...+++.++.+.+.-+.++
T Consensus 96 ~~~l~~~~~~l~~~~-------~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 96 IEILDKRKEELEKAL-------EKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 4444444444444444444444443
No 346
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.60 E-value=1.2e+02 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
.-.++-+|+.++....+++
T Consensus 41 ~~keNieLKve~~~L~~el 59 (75)
T PF07989_consen 41 LLKENIELKVEVESLKREL 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666
No 347
>PRK10869 recombination and repair protein; Provisional
Probab=37.59 E-value=1.2e+02 Score=29.48 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
++...+.+.+.|++|.+.+.++|..+.++..+.|.+
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566777899999999999998888887665544
No 348
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.45 E-value=1.3e+02 Score=20.32 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=8.2
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
.++|+|-+.+.++-+++
T Consensus 17 ~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 17 NTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555544444444444
No 349
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=37.33 E-value=51 Score=23.77 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 027898 147 DDIATLKTKIKKLESECEMKDKE 169 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~~ke 169 (217)
+++..|+.++++|+.||.+..++
T Consensus 7 eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 7 EENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777888888888776665
No 350
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=37.15 E-value=2.7e+02 Score=23.96 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+.+++..-++.+..-+.|++.+.+.+..+.+.+..
T Consensus 118 ~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a 152 (237)
T cd07657 118 DEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEA 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666777777776666665543
No 351
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=37.15 E-value=28 Score=26.75 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=5.5
Q ss_pred HHHHHhHhhHHHHH
Q 027898 178 EALKKQSEGFLLEY 191 (217)
Q Consensus 178 ~aLKkQae~l~~EY 191 (217)
+.+++|.+.++.++
T Consensus 26 ~~~~~~~~~~~~~l 39 (144)
T PF04350_consen 26 EELKKQLEQLEQQL 39 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444333333
No 352
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.11 E-value=1.1e+02 Score=25.91 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=12.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.++++.+.+...|-|+..|.++.+..
T Consensus 49 ~~l~~e~~elkd~~lR~~AEfeN~rkR 75 (194)
T PRK14162 49 ADLKAKNKDLEDKYLRSQAEIQNMQNR 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555444443
No 353
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=37.02 E-value=4e+02 Score=27.07 Aligned_cols=49 Identities=31% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+..+.....-++++.+.|...-|+|.+...++-.+|-++...|++.++
T Consensus 503 ~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnele 551 (786)
T PF05483_consen 503 QLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELE 551 (786)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345555555555555555555555555555555555544
No 354
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=36.92 E-value=1.9e+02 Score=24.03 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 44 VVKTVGGTLFIVLMSSVYSILKIQQR 69 (217)
Q Consensus 44 ~~~~~~~~l~llF~Dsi~~~~k~~~~ 69 (217)
+....++++++..+|++.--++++..
T Consensus 104 ~~~~~~~~~~~~iid~~~l~r~vkk~ 129 (170)
T PF11241_consen 104 VTLAMYVLLLLVIIDGVILGRRVKKR 129 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677888998777776654
No 355
>PRK14154 heat shock protein GrpE; Provisional
Probab=36.91 E-value=91 Score=26.67 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 027898 155 KIKKLESECEMK 166 (217)
Q Consensus 155 e~~~Lk~el~~~ 166 (217)
+++.|+.+++..
T Consensus 53 ~~~~l~~el~~l 64 (208)
T PRK14154 53 SREKLEGQLTRM 64 (208)
T ss_pred chhhHHHHHHHH
Confidence 344455444433
No 356
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=36.75 E-value=4.2e+02 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 89 LEASLMGFLLFLSLMMDRLHHYIR 112 (217)
Q Consensus 89 ~~~YLtGF~LFL~lvI~r~~~li~ 112 (217)
+.-.|-.|++.|-.++..-.++..
T Consensus 535 LE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 535 LERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred HHHHHHHHHHHHHHHHHccchHHH
Confidence 455688888888888888777755
No 357
>PRK04406 hypothetical protein; Provisional
Probab=36.43 E-value=1.6e+02 Score=20.96 Aligned_cols=28 Identities=11% Similarity=0.047 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 160 ESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 160 k~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.-|+..++.+...+.+++.|+.|...+
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333334444444333
No 358
>PRK14159 heat shock protein GrpE; Provisional
Probab=36.43 E-value=92 Score=25.86 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.++++++.+++..+..+..+.+|++..||.++.-
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE 63 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKE 63 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888877778888888888888876644
No 359
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=36.42 E-value=2.6e+02 Score=23.64 Aligned_cols=67 Identities=9% Similarity=-0.056 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhccccCCCc
Q 027898 149 IATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKK 215 (217)
Q Consensus 149 ~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~~~~~KK 215 (217)
...+..=.+.++.+.+..+.+..++.++.....++++...+.|+..+.+.+.++.+.+...+.+..|
T Consensus 88 ~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK 154 (236)
T cd07651 88 EEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEK 154 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHH
No 360
>PRK02119 hypothetical protein; Provisional
Probab=36.42 E-value=1.5e+02 Score=20.84 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
.+.-|+..++.+...+++++.|+.|...+
T Consensus 21 QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333334444444443
No 361
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.21 E-value=1.8e+02 Score=26.98 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
+.+++++++.++++.+..+++.. .-++|.+.++...+++..+.++++
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655555443322 333444444444444433333333
No 362
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.14 E-value=1e+02 Score=27.35 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 027898 191 YDRLLADNQHLRNQLESI 208 (217)
Q Consensus 191 YdrL~~e~~~l~~~~~~~ 208 (217)
+..+..|+++|++-|+..
T Consensus 93 ~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 93 TQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 344777788888777653
No 363
>PF15294 Leu_zip: Leucine zipper
Probab=35.79 E-value=1.3e+02 Score=27.00 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=18.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 027898 147 DDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFL 188 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~ 188 (217)
++|.++.+|+++|+..+...++.-..+-.+...++.|...++
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444433333333344444444433
No 364
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.75 E-value=1.8e+02 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAE 178 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~ 178 (217)
+..++..|+.+..+...++..++.+++
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~aaa~ 55 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRPQIY 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444433333333
No 365
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=35.53 E-value=98 Score=29.34 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 027898 189 LEYDRLLADNQ 199 (217)
Q Consensus 189 ~EYdrL~~e~~ 199 (217)
+|-|..|+|-+
T Consensus 286 ~EL~~VcEEqq 296 (426)
T smart00806 286 AELDKVCEEQQ 296 (426)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 366
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=35.48 E-value=1.9e+02 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 027898 115 RLLRKAMEAAKKQ 127 (217)
Q Consensus 115 ~~l~~~~~a~~kQ 127 (217)
...+..++++..|
T Consensus 83 ~~a~a~l~~~~~~ 95 (334)
T TIGR00998 83 AKAEANLAALVRQ 95 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 367
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.37 E-value=82 Score=23.97 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
.+++.+|+.++..++.|. +.|||-+
T Consensus 77 ~~ei~~L~~el~~L~~E~-------diLKKa~ 101 (121)
T PRK09413 77 MKQIKELQRLLGKKTMEN-------ELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 445555665555554444 7777754
No 368
>PRK00106 hypothetical protein; Provisional
Probab=35.32 E-value=2.6e+02 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
|+.++++|.+.+.+++...+..+...+++++...+++.+.
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555566666666666666666666665543
No 369
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.26 E-value=36 Score=26.70 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRL 107 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~ 107 (217)
=+-|.+||+++||+|.
T Consensus 76 GvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 76 GVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567778888888764
No 370
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.26 E-value=4.2e+02 Score=25.63 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 154 TKIKKL---ESECEMKD-KEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 154 ~e~~~L---k~el~~~~-kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
++++.| +.++++.. -.|...+++.++..-+--.|+.||++--.+
T Consensus 460 eeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 460 EEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445444 44454333 233333444455555555666666654333
No 371
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=35.17 E-value=2.2e+02 Score=25.81 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhhhh
Q 027898 117 LRKAMEAAKKQTRSFE 132 (217)
Q Consensus 117 l~~~~~a~~kQa~~~~ 132 (217)
+++..+++..++.+..
T Consensus 4 l~~~~~~~~~~~r~l~ 19 (378)
T TIGR01554 4 LKEQREEIVAEIRSLL 19 (378)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544443
No 372
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.16 E-value=4e+02 Score=25.30 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
++...++.++.+...++..-.+....|+....++..+|-.|.++.+.+
T Consensus 123 ~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555556666666666665555554443
No 373
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.14 E-value=1.6e+02 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 104 MDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~ 125 (217)
+.++...+.++....+.++.+.
T Consensus 22 ~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 22 LQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555554
No 374
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=35.05 E-value=2.7e+02 Score=23.37 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=1.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYI 111 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li 111 (217)
||-+++.-+++++..+-.-+
T Consensus 39 yil~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 39 YILFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp -----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666655444
No 375
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=35.04 E-value=1e+02 Score=23.49 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~ 125 (217)
|||-++|+.+++-.++.+++=+..++..+-.++
T Consensus 2 is~d~i~~Al~~v~~vNm~RY~SsLR~LL~imR 34 (107)
T PF10625_consen 2 ISGDAIFWALCIVCIVNMARYFSSLRALLYIMR 34 (107)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999888888877765543
No 376
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.80 E-value=1.6e+02 Score=31.04 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=30.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 145 LGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 145 ~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
...+++.+.+++..|..|++++...+ --|+.-.+.+.+|+++|.-|.....
T Consensus 175 L~velAdle~kir~LrqElEEK~enl-------l~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENL-------LRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888777666 4444444455555555554444443
No 377
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=34.75 E-value=1.7e+02 Score=26.81 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 184 SEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 184 ae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..|+..||.||--|++=.+.++..
T Consensus 283 l~~qaAefq~l~lE~~fAekay~A 306 (372)
T COG3524 283 LSNQAAEFQRLYLENTFAEKAYAA 306 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999998887766666653
No 378
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=34.70 E-value=4.1e+02 Score=25.31 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027898 105 DRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~ 125 (217)
.+.-.+..+++.+++..++++
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~ 47 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIK 47 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666676666655
No 379
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.66 E-value=1.5e+02 Score=21.66 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.7
Q ss_pred HHHHHhHhhHH
Q 027898 178 EALKKQSEGFL 188 (217)
Q Consensus 178 ~aLKkQae~l~ 188 (217)
++-++++||++
T Consensus 28 e~qk~E~EN~E 38 (83)
T PF14193_consen 28 EAQKTEAENLE 38 (83)
T ss_pred HHHHHHHHHHH
Confidence 55666666663
No 380
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=34.60 E-value=2.6e+02 Score=25.37 Aligned_cols=12 Identities=0% Similarity=-0.094 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 027898 114 LRLLRKAMEAAK 125 (217)
Q Consensus 114 l~~l~~~~~a~~ 125 (217)
.....++.+++.
T Consensus 8 ~~~~~~~~r~l~ 19 (378)
T TIGR01554 8 REEIVAEIRSLL 19 (378)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 381
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.35 E-value=2.2e+02 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=22.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.+-=++.+.++..|+.+.++++.|+.+.
T Consensus 491 k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 491 KQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888899999999999888764
No 382
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=34.16 E-value=2.5e+02 Score=28.11 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=34.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH------HHHHHHHHHH
Q 027898 143 KGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF------LLEYDRLLAD 197 (217)
Q Consensus 143 ~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l------~~EYdrL~~e 197 (217)
.....+++.++.++..++++|+..+.++...+...+-+..+..+. -..|++-+++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~ 142 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEE 142 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777777777777766666555554443 3456644433
No 383
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=33.95 E-value=3.6e+02 Score=27.62 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHhHhhHHHHHHH
Q 027898 180 LKKQSEGFLLEYDR 193 (217)
Q Consensus 180 LKkQae~l~~EYdr 193 (217)
|+..++.|-.|++.
T Consensus 509 L~eK~~kLk~Efnk 522 (762)
T PLN03229 509 LMEKIEKLKDEFNK 522 (762)
T ss_pred HHHHHHHHHHHHHH
Confidence 44456666666653
No 384
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.73 E-value=4.6e+02 Score=25.58 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAA---KAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~---~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
++....++++.|+..+....+.+++. -.+++-|-..-+.|.+|-|+...+.++|.+
T Consensus 338 eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k 396 (622)
T COG5185 338 EIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTK 396 (622)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 33333344444554444444444333 234444444455555666555555555443
No 385
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=33.65 E-value=2.9e+02 Score=23.25 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhH
Q 027898 169 EANAAKAEAEALKKQS 184 (217)
Q Consensus 169 el~~~~~d~~aLKkQa 184 (217)
.+..++.+++..|.++
T Consensus 150 ~l~~Ae~~I~~ek~~A 165 (204)
T PRK09174 150 KLKEAEARIAAIKAKA 165 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 386
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.65 E-value=3.3e+02 Score=23.89 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-HHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE-YDRLLAD 197 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E-YdrL~~e 197 (217)
+.++++++..+..+..+...++.+-..--.++.+.+.. |...+++
T Consensus 161 k~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~ 206 (252)
T cd07675 161 KSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQ 206 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 45678888888888888877777777666667666655 7666655
No 387
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=33.62 E-value=2.2e+02 Score=23.99 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++-+++.++...++-+ ..|+..-+.|..|+..+.++...++..++
T Consensus 10 ~eL~~lk~~L~~a~rg~-------~lLk~KR~~Li~e~~~~~~~~~~lr~~~~ 55 (201)
T PRK02195 10 NSLKKQKKQLKMLERYL-------PTLKLKKAQLQAEVRRAKAEAAELEQEYQ 55 (201)
T ss_pred HHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555555 77777777777777777777777766554
No 388
>COG1422 Predicted membrane protein [Function unknown]
Probab=33.60 E-value=3e+02 Score=23.51 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 027898 113 ELRLLRKAMEAAKKQTRSFE 132 (217)
Q Consensus 113 ~l~~l~~~~~a~~kQa~~~~ 132 (217)
++.++++.+++.++.-+.|.
T Consensus 73 km~~~qk~m~efq~e~~eA~ 92 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQ 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555666555544443
No 389
>PRK04406 hypothetical protein; Provisional
Probab=33.48 E-value=1.8e+02 Score=20.68 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+.+.+.+|+..+.=.+..+ +.|-+..-..+++-|+|......+.+++...
T Consensus 9 le~Ri~~LE~~lAfQE~tI-------e~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTI-------EELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666666655555555 7777777777777777777777776666543
No 390
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=33.40 E-value=1.3e+02 Score=24.50 Aligned_cols=19 Identities=5% Similarity=0.073 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhHhh
Q 027898 168 KEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 168 kel~~~~~d~~aLKkQae~ 186 (217)
+.++.++.+.+.+-++++.
T Consensus 63 ~~L~~Ar~EA~~Ii~~A~~ 81 (154)
T PRK06568 63 AQIKKLETLRSQMIEESNE 81 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 391
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.38 E-value=1.6e+02 Score=20.27 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAK-AEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~-~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
..+++.+..|+..+-|+...- ++...++.+..+...+++.+..++
T Consensus 32 ~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 32 RDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555554443 455666677777666666665544
No 392
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.37 E-value=1.4e+02 Score=21.57 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEA 170 (217)
Q Consensus 155 e~~~Lk~el~~~~kel 170 (217)
+.+.++.+++..++.+
T Consensus 70 ~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 70 RIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 393
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.25 E-value=2.6e+02 Score=24.01 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHhhH
Q 027898 168 KEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 168 kel~~~~~d~~aLKkQae~l 187 (217)
..|.++.++++-+|+|....
T Consensus 103 rsi~~a~~kie~lkkql~ea 122 (222)
T KOG3215|consen 103 RSIQKARNKIELLKKQLHEA 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666544
No 394
>PRK14149 heat shock protein GrpE; Provisional
Probab=33.18 E-value=1.1e+02 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
++.+++|+.+++..+..+..+.+|++..||.++.
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~k 75 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLER 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888899988886654
No 395
>PRK14140 heat shock protein GrpE; Provisional
Probab=33.12 E-value=1.4e+02 Score=25.14 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 027898 184 SEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 184 ae~l~~EYdrL~~e~~~l~~ 203 (217)
.+.+...|-|+..|.++.+.
T Consensus 53 i~elkd~~lR~~Ae~eN~rk 72 (191)
T PRK14140 53 LDELEERYLRLQADFENYKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433
No 396
>PRK04960 universal stress protein UspB; Provisional
Probab=33.09 E-value=1.2e+02 Score=23.37 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~ 125 (217)
|||.++|+.+++-.++.+++=...++..+-.++
T Consensus 2 is~d~i~~Al~~v~~vNm~RY~SsLR~LL~imR 34 (111)
T PRK04960 2 ISTVALFWALCVVCIVNMARYFSSLRALLVVLR 34 (111)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999888888887766544
No 397
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.07 E-value=2e+02 Score=21.88 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQ 183 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQ 183 (217)
++++.+..+.+..+..+++.+.+...||++
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 87 ERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333444443
No 398
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.07 E-value=1.8e+02 Score=21.39 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 027898 110 YIRELRLLRKAMEAAKKQTRSF 131 (217)
Q Consensus 110 li~~l~~l~~~~~a~~kQa~~~ 131 (217)
+..+...+++.....+.+.+..
T Consensus 3 V~~eId~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555666555555444333
No 399
>PF15294 Leu_zip: Leucine zipper
Probab=33.02 E-value=1.4e+02 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.||.....+++.+...++|..+++.++.
T Consensus 142 ~kLk~rl~~le~~at~~l~Ek~kl~~~L~ 170 (278)
T PF15294_consen 142 EKLKERLKSLEKQATSALDEKSKLEAQLK 170 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777777776666655
No 400
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.02 E-value=42 Score=32.35 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 027898 155 KIKKLESEC 163 (217)
Q Consensus 155 e~~~Lk~el 163 (217)
++++|++||
T Consensus 32 kie~L~kql 40 (489)
T PF11853_consen 32 KIEALKKQL 40 (489)
T ss_pred HHHHHHHHH
Confidence 444444444
No 401
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.95 E-value=2.3e+02 Score=21.79 Aligned_cols=41 Identities=10% Similarity=0.251 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
.++..++-.+.+|+.-++..+.++++.+.++..+..+...+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444454555555788888888887777766543
No 402
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.94 E-value=3.1e+02 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=8.4
Q ss_pred HHHHHhHhhHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e 197 (217)
+.|+.+...+..|--.|.++
T Consensus 83 ~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREE 102 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHH
Confidence 44444444444444333333
No 403
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.93 E-value=3e+02 Score=25.48 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHhHhhHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e 197 (217)
++|+.|...+++.-|=|...
T Consensus 256 etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 256 ETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 34444444444444434333
No 404
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=32.75 E-value=51 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.362 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhccc-hh
Q 027898 1 MIQLLYTVIFSQMALIMTLLFKT-PL 25 (217)
Q Consensus 1 ~~~lvf~~L~~Em~~~llLvlPl-P~ 25 (217)
|+.+||++.|.++++++.-|-.- |.
T Consensus 69 ~wa~ifllPYLQ~FlfL~sCTR~DP~ 94 (128)
T PF15190_consen 69 MWALIFLLPYLQLFLFLYSCTRADPR 94 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 57899999999999998877765 53
No 405
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.69 E-value=2.9e+02 Score=23.36 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 027898 115 RLLRKAMEA 123 (217)
Q Consensus 115 ~~l~~~~~a 123 (217)
-.++..++.
T Consensus 84 qeLe~~L~~ 92 (203)
T KOG3433|consen 84 QELESQLAT 92 (203)
T ss_pred HHHHHHHHH
Confidence 444444443
No 406
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.57 E-value=1.8e+02 Score=24.70 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHhhHH
Q 027898 152 LKTKIKKLESECEMKDKEANA----AKAEAEALKKQSEGFL 188 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~----~~~d~~aLKkQae~l~ 188 (217)
|+.|+.+|+.+|...+++... ...+..-+|.|.|+|.
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL 141 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLL 141 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH
Confidence 444555555555544444433 1122234577777773
No 407
>PRK14145 heat shock protein GrpE; Provisional
Probab=32.53 E-value=2.7e+02 Score=23.55 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.++++++.+...|-|+..|.++.+...+
T Consensus 55 ~~le~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 55 QQKEVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544433
No 408
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=32.41 E-value=5.4e+02 Score=26.53 Aligned_cols=44 Identities=30% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
.++.+++.++++.+.|+...+++-++||++-..| .||...+++-
T Consensus 92 ~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL-~E~~~vl~~t 135 (829)
T KOG2189|consen 92 REIIDLEEQLEKLESELRELNANKEALKANYNEL-LELKYVLEKT 135 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhh
Confidence 4455566666666666655555556666654444 4444444443
No 409
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=32.25 E-value=5.7e+02 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELR 115 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~ 115 (217)
.+.|+.-.+ ..|..++.+|+.-.
T Consensus 371 ~~~g~~~~~-~~~d~vi~~ir~~~ 393 (800)
T TIGR01063 371 ILEGLLIAL-DNIDEVIALIRASQ 393 (800)
T ss_pred HHHHHHHHH-HhhhHHHHHHHhCC
Confidence 788888733 45666666665433
No 410
>PRK14147 heat shock protein GrpE; Provisional
Probab=32.25 E-value=1.1e+02 Score=25.19 Aligned_cols=20 Identities=20% Similarity=-0.021 Sum_probs=8.1
Q ss_pred hHhhHHHHHHHHHHHHHHHH
Q 027898 183 QSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 183 Qae~l~~EYdrL~~e~~~l~ 202 (217)
+.+.+...|-|+..|.++.+
T Consensus 33 e~~elkd~~lR~~Ad~eN~r 52 (172)
T PRK14147 33 EIALVKADALRERADLENQR 52 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433
No 411
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=32.15 E-value=2.8e+02 Score=26.33 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDK 168 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~k 168 (217)
+-.++++|+.-++...+
T Consensus 218 Ll~kVdDLQD~VE~LRk 234 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRK 234 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555544444444
No 412
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.13 E-value=3.3e+02 Score=23.43 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKK 182 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk 182 (217)
+|-+-..+=.++...+...+.+..+|+.+-..+. .+-+.. .-++...|+..++..+..+..+...++.|++
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~-------al~~~~~le~~~~~~~~~~~~~~~~~~~l~~ 120 (225)
T COG1842 50 AIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLARE-------ALEEKQSLEDLAKALEAELQQAEEQVEKLKK 120 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777777643111 010111 1134445555555555555555555666666
Q ss_pred hHhhHHHHHHHHHHHHHH
Q 027898 183 QSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 183 Qae~l~~EYdrL~~e~~~ 200 (217)
+...|..-|..+...++-
T Consensus 121 ~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 121 QLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666555543
No 413
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.13 E-value=49 Score=31.89 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE 190 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E 190 (217)
+++.++ +|++++++| +.||+|.+.+++.
T Consensus 26 ~~~~~q-kie~L~kql-------~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQL-------EELKAQQDDLNDR 53 (489)
T ss_pred hhHHHH-HHHHHHHHH-------HHHHHhhcccccc
Confidence 344444 666555555 5555555544333
No 414
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.09 E-value=3e+02 Score=24.75 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 141 ERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 141 ~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+....+....+..++....+...+...|++-+.+.+..+|..+.|+.--=..++||++-...|+
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLq 178 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQ 178 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
No 415
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.94 E-value=4.9e+02 Score=25.32 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.+..+...|...+.++..-...++.|..+-+....+|+.+.+.|..++.++-.
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~ 158 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA 158 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777788999999999999999999999999988764
No 416
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.93 E-value=1.8e+02 Score=29.01 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=12.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
+.+..+......++++..++-...
T Consensus 103 ~~~e~e~~~~e~~~~q~~~~~~~~ 126 (632)
T PF14817_consen 103 ESREREVSRQEASREQMLDKISDS 126 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544433
No 417
>PRK14139 heat shock protein GrpE; Provisional
Probab=31.92 E-value=1.4e+02 Score=24.93 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 027898 154 TKIKKLESECE 164 (217)
Q Consensus 154 ~e~~~Lk~el~ 164 (217)
.++..++.+++
T Consensus 32 ~e~~~l~~~l~ 42 (185)
T PRK14139 32 DAAPALEAELA 42 (185)
T ss_pred hhHHHHHHHHH
Confidence 34444554443
No 418
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.90 E-value=1.7e+02 Score=20.14 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=11.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.|-...-..+++-|+|......+.+++.
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 419
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=31.79 E-value=1.4e+02 Score=23.57 Aligned_cols=34 Identities=41% Similarity=0.478 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.+.+|..|++...+++..+-++.+.+-++++++
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777766666667777666655
No 420
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.64 E-value=3.9e+02 Score=24.12 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.=+|+-||..|+..++.+...+++..--.+..+-+-..+|.|..+...|+.++.
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666665444444433333444444444555555555555554
No 421
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.57 E-value=2.8e+02 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELR 115 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~ 115 (217)
+..|.++++++-+-++.-|....
T Consensus 23 ~i~Flil~~iL~~~~~kpi~~~l 45 (173)
T PRK13460 23 LVTFLVVVLVLKKFAWDVILKAL 45 (173)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 55666666655444444444333
No 422
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.53 E-value=1.8e+02 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=12.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 027898 145 LGDDIATLKTKIKKLESECEM 165 (217)
Q Consensus 145 ~~~~~~~l~~e~~~Lk~el~~ 165 (217)
..+||..|+-|++.|+..+.+
T Consensus 34 l~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 34 LLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666653
No 423
>PF13514 AAA_27: AAA domain
Probab=31.46 E-value=6.5e+02 Score=26.62 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 027898 117 LRKAMEAAKKQ 127 (217)
Q Consensus 117 l~~~~~a~~kQ 127 (217)
+...++.+..+
T Consensus 859 l~~~~~~~~~~ 869 (1111)
T PF13514_consen 859 LREELEDLERQ 869 (1111)
T ss_pred HHHHHHHHHHH
Confidence 33333334433
No 424
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.44 E-value=2e+02 Score=21.80 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKK 126 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~k 126 (217)
.++-.-+.++....+.++.+.+
T Consensus 23 ~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 23 ARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444455555555555543
No 425
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.33 E-value=2.3e+02 Score=21.94 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
++..++.|...++..++++
T Consensus 99 l~~~~~~l~~~~~~l~~~l 117 (140)
T PRK03947 99 LDKRKEELEKALEKLEEAL 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555
No 426
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.19 E-value=3.6e+02 Score=23.81 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
.++++.++..+.++-+.-..+-+.|+.|-+||-.+-..|
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el 130 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHEL 130 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444444444444444444455577777777775444333
No 427
>PRK11281 hypothetical protein; Provisional
Probab=31.17 E-value=5.6e+02 Score=27.49 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..|..-++.+++..+.++..+..--+-.++|.+-+..+++++..+-+.||+.++
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777666777778887777777777666555555444
No 428
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=31.15 E-value=7.3e+02 Score=27.12 Aligned_cols=32 Identities=28% Similarity=0.201 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
..+.+-+.+|...+..|-..+.++++.+..+.
T Consensus 260 ~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i 291 (1294)
T KOG0962|consen 260 LKELEKLLKQVKLLDSEHKNLKKQISRLREKI 291 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444444444444444433
No 429
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=31.10 E-value=2.3e+02 Score=30.87 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 027898 42 PVVVKTVGGTLFIVLM 57 (217)
Q Consensus 42 ~~~~~~~~~~l~llF~ 57 (217)
|..++.+...+++++.
T Consensus 832 P~~Vk~~meavciLlg 847 (1395)
T KOG3595|consen 832 PHAVKLVMEAVCILLG 847 (1395)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5566666665555554
No 430
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.03 E-value=3.1e+02 Score=28.03 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
++.|.-.|.+.+++-.......+.+..+++..+++++-+|.+|..+..+++..
T Consensus 709 lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 709 LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555555666677788888888888888888777665443
No 431
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=30.98 E-value=2.3e+02 Score=21.29 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDR 106 (217)
Q Consensus 92 YLtGF~LFL~lvI~r 106 (217)
|+.|...++.+++.-
T Consensus 4 ~~~~~l~~lvl~L~~ 18 (110)
T PF10828_consen 4 YIYIALAVLVLGLGG 18 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444433
No 432
>PF14282 FlxA: FlxA-like protein
Probab=30.70 E-value=2.3e+02 Score=21.22 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKA----EAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~----d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
....++.|+.+|..+.++|..... +.+.-++|.+-|+..-.-|......++.+..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888877655 5567788888888888888777777765544
No 433
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.68 E-value=2.6e+02 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+..+++|.+|-+-++..|+.|..+....-.
T Consensus 83 e~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 83 ELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334489999999999999888766554433
No 434
>PLN02320 seryl-tRNA synthetase
Probab=30.62 E-value=3.2e+02 Score=26.49 Aligned_cols=8 Identities=25% Similarity=0.111 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027898 156 IKKLESEC 163 (217)
Q Consensus 156 ~~~Lk~el 163 (217)
.++|+.++
T Consensus 139 ~k~lk~~i 146 (502)
T PLN02320 139 GKNLKEGL 146 (502)
T ss_pred HHHHHHHH
Confidence 33333333
No 435
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.50 E-value=4e+02 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=9.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
+.|+-..+..++-|+.+...++.
T Consensus 281 ~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 281 QRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443333
No 436
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.47 E-value=1.6e+02 Score=20.12 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
|.+-+..|+.||...+.++
T Consensus 26 L~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444
No 437
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.44 E-value=2.2e+02 Score=20.94 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDK 168 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~k 168 (217)
.+|++.|+.|....+.
T Consensus 36 ~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 36 QKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 438
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.27 E-value=3.4e+02 Score=23.05 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
.+++++++..++....+..+++.+....-.+.+.....|.
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~ 191 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE 191 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888887777777776666655555666655554
No 439
>PRK14164 heat shock protein GrpE; Provisional
Probab=30.12 E-value=1.2e+02 Score=26.20 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
.++..|+.+++..+..+.+..+|++..||+.+.
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~r 109 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTER 109 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777888888888887643
No 440
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=29.81 E-value=2.2e+02 Score=23.39 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
...+..-+++++..+...-.+.+..+.+++.+..+|+..+.+
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~ 94 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALAD 94 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.80 E-value=1.8e+02 Score=19.71 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDK 168 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~k 168 (217)
+..++++++.+++..++
T Consensus 9 L~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 442
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.62 E-value=2.3e+02 Score=20.86 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEA 170 (217)
Q Consensus 156 ~~~Lk~el~~~~kel 170 (217)
+++|.+|.+....|.
T Consensus 32 ~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 32 NAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 443
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.54 E-value=1.2e+02 Score=25.75 Aligned_cols=17 Identities=41% Similarity=0.476 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+|+++|-.+|+.++.++
T Consensus 125 ~ENe~Lh~~ie~~~eEi 141 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEI 141 (200)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555555
No 444
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=29.54 E-value=3.7e+02 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.+-+.++.....=++++-++++--+.|+..+
T Consensus 28 lRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~L 59 (214)
T PF07795_consen 28 LRKREEQIAHLKDLLKKAYQERDEAREQLQKL 59 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444445555555544
No 445
>PRK02119 hypothetical protein; Provisional
Probab=29.41 E-value=2e+02 Score=20.18 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+.+.+.+|+..+.=-+..+ +.|-...-..+++-|+|......+.+++..
T Consensus 7 ~e~Ri~~LE~rla~QE~ti-------e~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLL-------EELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666665555555 777777777777777777777777666654
No 446
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=29.28 E-value=2.3e+02 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
++++|..++...+........|+.+++.++..-..|=+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~ 62 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEAN 62 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544443333
No 447
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=29.20 E-value=4e+02 Score=27.10 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 140 DERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 140 ~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.+...+...+..+.+.++.++.....-.+++..+.++.+.|++|....+.+.+....-.+.|++.+
T Consensus 162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 448
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.19 E-value=3e+02 Score=27.54 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 145 LGDDIATLKTKIKKLESECEMKDKEANAAKAEAE 178 (217)
Q Consensus 145 ~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~ 178 (217)
+..+|++.+.++|+||++|.+++.||..-+.+++
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 3445555666666676666666666655544443
No 449
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.13 E-value=2.3e+02 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 027898 166 KDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 166 ~~kel~~~~~d~~aLKkQa 184 (217)
.++.|..++.+...+..++
T Consensus 110 ye~~L~~Ar~eA~~Ii~~A 128 (204)
T PRK09174 110 YEQELAQARAKAHSIAQAA 128 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355555555555554433
No 450
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.09 E-value=2.2e+02 Score=28.08 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027898 195 LADNQHLRNQ 204 (217)
Q Consensus 195 ~~e~~~l~~~ 204 (217)
.++++.++.+
T Consensus 604 ~~~~~~~~~~ 613 (638)
T PRK10636 604 LQQQASAKSG 613 (638)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 451
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=29.06 E-value=2.1e+02 Score=26.22 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
+|..+++.+++.|.+-...++++++-++-++..+
T Consensus 119 ~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 119 KLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3333444444444333333344444444444443
No 452
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=28.97 E-value=6.3e+02 Score=25.67 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
..+.++....++..+........+++.++.+...++.|-.+|..+....++
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444455555555555556677788878888888877777766554
No 453
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.88 E-value=2.2e+02 Score=21.84 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 027898 168 KEANAAKAEAEALKKQ 183 (217)
Q Consensus 168 kel~~~~~d~~aLKkQ 183 (217)
+.+..++.+...+..+
T Consensus 64 ~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 64 QQLASARKQAQAVIAE 79 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 454
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.67 E-value=3.1e+02 Score=27.99 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=3.4
Q ss_pred Hhccchh
Q 027898 19 LLFKTPL 25 (217)
Q Consensus 19 LvlPlP~ 25 (217)
.-+|.|.
T Consensus 356 ~G~~vpa 362 (782)
T PRK00409 356 SGLPIPA 362 (782)
T ss_pred hCCCccc
Confidence 3445554
No 455
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.63 E-value=4e+02 Score=23.34 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+.++++.+.+..-++.+.--+.||+.+.|-+..+.+.+..
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka 153 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 153 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666667777777777777777777766665543
No 456
>PRK14156 heat shock protein GrpE; Provisional
Probab=28.46 E-value=1.4e+02 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=20.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+++|.+.+...|-|+..|.++.+...+
T Consensus 37 ~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 65 (177)
T PRK14156 37 ELANERADEFENKYLRAHAEMQNIQRRAN 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777766554
No 457
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.45 E-value=5.4e+02 Score=24.78 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 027898 113 ELRLLRKAMEAAKKQ 127 (217)
Q Consensus 113 ~l~~l~~~~~a~~kQ 127 (217)
++-..++.++.....
T Consensus 348 qlen~k~~~e~~~~e 362 (493)
T KOG0804|consen 348 QLENQKQYYELLITE 362 (493)
T ss_pred HHHhHHHHHHHHHHH
Confidence 444444444444333
No 458
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.40 E-value=3e+02 Score=27.05 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
++...+..+...++++..-..++.-|..|-+....+|+...+.|++||..+..
T Consensus 105 ~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~ 157 (570)
T COG4477 105 EIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLA 157 (570)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777777999999999999999999999999887664
No 459
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.30 E-value=1.6e+02 Score=28.57 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
..+++.+.+.++.++..++.. .-+++.+.....+|...++++
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~-------~e~~~~~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKE-------EELQRSAAEARERYKKACKQL 168 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555444433 445555555566666665554
No 460
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.27 E-value=3.4e+02 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAK 174 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~ 174 (217)
+.+++.+...+...-+.|..++
T Consensus 35 ~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 35 RAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 461
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=28.25 E-value=50 Score=25.05 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 99 FLSLMMDRLHHYIRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 99 FL~lvI~r~~~li~~l~~l~~~~~a~~kQ 127 (217)
||--|...+..+..+...++..++.+..+
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQ 54 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666667777666666655444
No 462
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=28.24 E-value=2.4e+02 Score=23.53 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF-LLEYDRL 194 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l-~~EYdrL 194 (217)
++.|+.+...||+++=+|| ||++++ .+.||.|
T Consensus 52 LkNeLREVREELkEKmeEI-----------KQIKdiMDKDFDKL 84 (205)
T PF15079_consen 52 LKNELREVREELKEKMEEI-----------KQIKDIMDKDFDKL 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHH
Confidence 5555666666666665566 555554 4566666
No 463
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=28.14 E-value=1.6e+02 Score=22.67 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 163 CEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 163 l~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+...+..+...+.++.+.+....+...+.....++...++..-
T Consensus 71 i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 71 IEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp ---HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444447777777777777777777777666543
No 464
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=28.03 E-value=70 Score=31.03 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=21.8
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 027898 12 QMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60 (217)
Q Consensus 12 Em~~~llLvlPlP~R~~~~~~l~~~~~~~~~~~~~~~~~~l~llF~Dsi 60 (217)
-.++..+|++|+|.||. .+.+.++.+.+|+.+ +--|+|
T Consensus 25 Nl~faa~Ll~Pi~~~~l----------~~~R~~iAipig~aL-ly~Dsw 62 (518)
T PF11658_consen 25 NLAFAAFLLFPIPSRRL----------RRLRHWIAIPIGIAL-LYHDSW 62 (518)
T ss_pred HHHHHHHHHccCchHHH----------HHHHHHHHHHHHHHH-HHHhhc
Confidence 45666778889997544 122445555555443 444664
No 465
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=27.96 E-value=2.3e+02 Score=28.19 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
...+-.|+..+..++.+++.-+++.+-+.+++..+..+--.|..|.++.++
T Consensus 23 ~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 23 QNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 344557777888888888888888899999999888888888888888776
No 466
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.96 E-value=1.6e+02 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+.++++++.+...|-|+..|.++.+...
T Consensus 55 ~~le~e~~elkdk~lR~~AefeN~RKR~ 82 (199)
T PRK14144 55 TLAEQKAHENWEKSVRALAELENVRRRM 82 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555544433
No 467
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=27.80 E-value=51 Score=25.26 Aligned_cols=8 Identities=38% Similarity=0.339 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 027898 191 YDRLLADN 198 (217)
Q Consensus 191 YdrL~~e~ 198 (217)
...+..+.
T Consensus 52 ~~~ll~~l 59 (144)
T PF04350_consen 52 IPSLLEDL 59 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33443333
No 468
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.69 E-value=5.6e+02 Score=24.76 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
++++++..++.++.++.+.+.-.+.|.+-.+.+
T Consensus 346 ~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 346 RIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 445555555555555554444444444444433
No 469
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.66 E-value=4.8e+02 Score=23.93 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
+.+..+-.++..+++.+..-.++..+.-+ .+..........+...+++++.++. ++...+.+...|+.+.
T Consensus 282 P~v~~l~~~i~~l~~~l~~e~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~----~l~~~~~~~~~L~r~~ 351 (444)
T TIGR03017 282 PQYKRAQAEINSLKSQLNAEIKKVTSSVG------TNSRILKQREAELREALENQKAKVL----ELNRQRDEMSVLQRDV 351 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 027898 185 EGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 185 e~l~~EYdrL~~e~~~l~ 202 (217)
+...+-|+.+...++..+
T Consensus 352 ~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 352 ENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
No 470
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=27.52 E-value=3.1e+02 Score=21.99 Aligned_cols=42 Identities=31% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~ 195 (217)
+++.+|+.+.+.+..++.....+-+-|.+|...+-..+-+..
T Consensus 91 ~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~~~ 132 (139)
T KOG1510|consen 91 EKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIADLQ 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=27.48 E-value=1.7e+02 Score=22.68 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 172 AAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 172 ~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
..+.+++.||.|+..|...-.+|-.|+.-|+.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 472
>PRK14150 heat shock protein GrpE; Provisional
Probab=27.39 E-value=1.8e+02 Score=24.43 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHh
Q 027898 141 ERKGLGDDIATLKTKIKKLESECEMK----DKEANAAKAEAEALKKQSE 185 (217)
Q Consensus 141 ~~~~~~~~~~~l~~e~~~Lk~el~~~----~kel~~~~~d~~aLKkQae 185 (217)
.......+++...+++++|+.+++.+ +..+.++.+|++..|+.++
T Consensus 28 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~ 76 (193)
T PRK14150 28 DEAELEDELDEADARIAELEAQLAEAQAEERDSVLRARAEVENIRRRAE 76 (193)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.34 E-value=4.7e+02 Score=23.64 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
+.++.-|.++.+.-.......++..... ..-+++....+...+...++.+|-.++...-.++.+.-..++-+++-+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~----el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLK----ELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 027898 185 EGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 185 e~l~~EYdrL~~e~~~l~~~~ 205 (217)
+++..+|-.....-..+....
T Consensus 210 de~he~~ve~~~~~~e~~ee~ 230 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEF 230 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
No 474
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.26 E-value=4e+02 Score=22.82 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHH-----HHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESE-----CEMKD 167 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~e-----l~~~~ 167 (217)
+..|.++++++-+-++.-|.....-+. +......+.+.+....-..............+.+...+-.+ -..++
T Consensus 12 iInFlil~~lL~kfl~kPi~~~l~~R~--~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~ 89 (246)
T TIGR03321 12 LINFLILVWLLKRFLYRPILDAMDARE--KKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQ 89 (246)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 168 KEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 168 kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+-+..|+.+.+.++.++..- +..|.++...++..
T Consensus 90 ~i~~~A~~ea~~~~~~a~~~------ie~E~~~a~~~l~~ 123 (246)
T TIGR03321 90 RLLDEAREEADEIREKWQEA------LRREQAALSDELRR 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
No 475
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=27.22 E-value=4.7e+02 Score=25.70 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChH
Q 027898 2 IQLLYTVIFSQMALIMTLLFKT--PLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGALNPT 79 (217)
Q Consensus 2 ~~lvf~~L~~Em~~~llLvlPl--P~R~~~~~~l~~~~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~~~~~~~ 79 (217)
+...++++++=++.++++..++ |++++.+..+-.+...-.......+++++..=.+.++.+. ..+..
T Consensus 43 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~~~~~l~l~sa~asy~~~~y~i~~~~~mi~~v~~T-----------n~~E~ 111 (555)
T COG2194 43 LSFSFSFLLALVFAFLLLLLLLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFET-----------NTAES 111 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhcC-----------Chhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 80 DQILMSKHMLEASLMGFLLFLSLMMDRL 107 (217)
Q Consensus 80 ~~~~~~~~l~~~YLtGF~LFL~lvI~r~ 107 (217)
.++..-.+..-+++.|+.-.+.+++.++
T Consensus 112 ~el~t~~~~~~l~~~g~l~~ll~~~~~~ 139 (555)
T COG2194 112 SELLTLYFLLWLVLVGLLPALLIVLVII 139 (555)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.18 E-value=3.3e+02 Score=24.54 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..|+..|++....|.--+.+++-||.|....+..+ .-||..+...||+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLA 118 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
No 477
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=27.11 E-value=2.3e+02 Score=25.19 Aligned_cols=51 Identities=29% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhcccc-CCCc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESIDHS-DSKK 215 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~~~-~~KK 215 (217)
.+..++..|.+..++++ ++.+..+.+.+.|.+|+++|++.+....++ +.++
T Consensus 66 ~~~~~~~~en~~Lk~~l-----------~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~ 117 (284)
T COG1792 66 KSLKDLALENEELKKEL-----------AELEQLLEEVESLEEENKRLKELLDFKESSSDYDP 117 (284)
T ss_pred HHhHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
No 478
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.04 E-value=3.7e+02 Score=22.36 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC-------------------CCchhhhhhhhhhhhhhH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGK-------------------NDNVDERKGLGDDIATLK 153 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~-------------------~~~~~~~~~~~~~~~~l~ 153 (217)
++.+++++++++..++.--.--.+....-..+..-...+.... ..-..+.+....++....
T Consensus 5 ~~i~~~~vG~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E 84 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLE 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+.+-+..|+.+...+.+.+.+++...++........+....+++.+..+..
T Consensus 85 ~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~ 137 (201)
T PF12072_consen 85 KRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQ 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=26.95 E-value=4e+02 Score=22.74 Aligned_cols=88 Identities=10% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 112 RELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 112 ~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
+....+.+....+....++.+...+.-......+ ..+++.+...|+..+..-..+++.+..|.++.+.++..-
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~-------e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl 181 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY-------EEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKL 181 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhh
Q ss_pred HHHHHHHHHHHHHhh
Q 027898 192 DRLLADNQHLRNQLE 206 (217)
Q Consensus 192 drL~~e~~~l~~~~~ 206 (217)
....++|..++..+.
T Consensus 182 ~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 182 EEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHHHHH
No 480
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=26.94 E-value=3.2e+02 Score=21.67 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027898 93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANA 172 (217)
Q Consensus 93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~ 172 (217)
+..|.++++++-+-++.-|.....-+. +......++.+...++.+++..+.+ ..+..
T Consensus 15 ~inflil~~lL~~fl~kpi~~~l~~R~--------------------~~I~~~l~~Ae~~~~ea~~~~~e~e---~~l~~ 71 (164)
T PRK14473 15 LINFLLLIFLLRTFLYRPVLNLLNERT--------------------RRIEESLRDAEKVREQLANAKRDYE---AELAK 71 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_pred HHHHHHHHHHhHhhH-HHHHHHHHHHHHH
Q 027898 173 AKAEAEALKKQSEGF-LLEYDRLLADNQH 200 (217)
Q Consensus 173 ~~~d~~aLKkQae~l-~~EYdrL~~e~~~ 200 (217)
++.+...+..++..- .++++...++-+.
T Consensus 72 A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ 100 (164)
T PRK14473 72 ARQEAAKIVAQAQERARAQEAEIIAQARR 100 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.69 E-value=2.5e+02 Score=20.19 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 147 DDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 147 ~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+.....++..|+..+. .++....++..|-++.+++..--+.+...-+..++-|+
T Consensus 11 ~dIk~vd~KVdaLq~~V~----~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVD----DLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 482
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=26.50 E-value=1e+03 Score=27.19 Aligned_cols=108 Identities=12% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc----CCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027898 99 FLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFED----GKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAK 174 (217)
Q Consensus 99 FL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~----~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~ 174 (217)
|..-+=.++-+...++..++..+..+.++..+..+ ...+..+.......+++.+..+++.+...+....+.+...+
T Consensus 952 ~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k 1031 (1822)
T KOG4674|consen 952 TRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQ 1031 (1822)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 175 AEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 175 ~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.|.+...+++.-.+..|++=+-+|..+...+.
T Consensus 1032 ~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~ 1063 (1822)
T KOG4674|consen 1032 NDLKTETEQLRKAQSKYESELVQHADLTQKLI 1063 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.31 E-value=6.5e+02 Score=24.95 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
.|+..+-.+-...+.-+..-....+.... ....+.+....++..++.+++++..++..+++.++.-+++.+.|.|.
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~---~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~- 483 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKAS---NRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD- 483 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 027898 185 EGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 185 e~l~~EYdrL~~e~~~l~~~ 204 (217)
-+-+..=.|..|=-.+.++|
T Consensus 484 ~~Rs~Yt~RIlEIv~NI~KQ 503 (594)
T PF05667_consen 484 VNRSAYTRRILEIVKNIRKQ 503 (594)
T ss_pred CCHHHHHHHHHHHHHhHHHH
No 484
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=26.28 E-value=4.7e+02 Score=23.28 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH---HHHHHHHHHHHHHhh
Q 027898 143 KGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY---DRLLADNQHLRNQLE 206 (217)
Q Consensus 143 ~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY---drL~~e~~~l~~~~~ 206 (217)
+....-...+++.++.+++.+++..++. ..+...|++|.+.+...- .++..+-..|.+-+.
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~---~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQR---SEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
No 485
>PRK00736 hypothetical protein; Provisional
Probab=26.22 E-value=2.3e+02 Score=19.64 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhcc
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESID 209 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~ 209 (217)
++...+.+|+..+.=.+..+ +.|-+..-..+++-|+|......+.+++...+
T Consensus 2 ~~e~Ri~~LE~klafqe~ti-------e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTI-------EELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=26.07 E-value=4.1e+02 Score=22.60 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 027898 110 YIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLL 189 (217)
Q Consensus 110 li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~ 189 (217)
++..+...+..+.+++.- ....+...|.....-..+.+.++...+..|++++-.+.+|..+.++-.+
T Consensus 123 y~~~l~~~eqry~aLK~h-------------AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAH-------------AEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027898 190 EYDRLLADNQHLRNQLE 206 (217)
Q Consensus 190 EYdrL~~e~~~l~~~~~ 206 (217)
|.+.|..=++.|-+++.
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
No 487
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.05 E-value=8.5e+02 Score=26.20 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 105 DRLHHYIREL-------RLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEA 177 (217)
Q Consensus 105 ~r~~~li~~l-------~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~ 177 (217)
.|.-.+...+ ...+.......++..+.....+..++..... +..|..-++.+++..+.++..+..--
T Consensus 130 ~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~------lqae~~~l~~~~~~l~~~l~s~~~~~ 203 (1109)
T PRK10929 130 DRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTA------LQAESAALKALVDELELAQLSANNRQ 203 (1109)
T ss_pred hhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHH------HHHHHHHHHHHHHHHHHHHhccHHHH
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+-.+.|.+=+.++++++..+-+.||+.++
T Consensus 204 ~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 204 ELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.89 E-value=1.9e+02 Score=21.84 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSE 185 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae 185 (217)
.+++++|+.+++ +++...++.++.+.++++
T Consensus 71 kEqL~~Lk~kl~---~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 71 KEQLKKLKEKLK---EEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
No 489
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=25.85 E-value=2.5e+02 Score=22.60 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+..=++++...|...-.+.+.+++|++.+..+|..-.++
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~ 69 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEE 69 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=25.79 E-value=3.4e+02 Score=21.46 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 149 IATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 149 ~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
+....++++.+..-.+.-+.+|+..+...+++.+-..+|.++|
T Consensus 41 ~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 41 QKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEY 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=25.69 E-value=4.1e+02 Score=22.42 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKK 182 (217)
Q Consensus 103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk 182 (217)
+.......+..+.+.++.++..-++.+++.......+. .++++++..+++.+.+...++++......
T Consensus 112 ~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~-------------ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~ 178 (236)
T cd07651 112 LLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWG-------------KELEKNNAKLNKAQSSINSSRRDYQNAVK 178 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHhhHHHHHHHHHHH
Q 027898 183 QSEGFLLEYDRLLAD 197 (217)
Q Consensus 183 Qae~l~~EYdrL~~e 197 (217)
+.+..+..|.+-..+
T Consensus 179 ~~~~~~~~~~~~~~~ 193 (236)
T cd07651 179 ALRELNEIWNREWKA 193 (236)
T ss_pred HHHHHHHHHHHHHHH
No 492
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.65 E-value=1.6e+02 Score=24.73 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhcc-------ccCCCc
Q 027898 151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESID-------HSDSKK 215 (217)
Q Consensus 151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~-------~~~~KK 215 (217)
....+-++-+.++++++..+ +.|..|++.+.+.++.|-..+++....+.... .|+.+|
T Consensus 96 ~e~~kee~~~~e~~elr~~~-------~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~~~sa~~k 160 (181)
T KOG3335|consen 96 KERKKEEKRKQEIMELRLKV-------EKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNPGPSAENK 160 (181)
T ss_pred cchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCCCchhhcC
No 493
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.55 E-value=8.4e+02 Score=26.04 Aligned_cols=103 Identities=12% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 027898 107 LHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG 186 (217)
Q Consensus 107 ~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~ 186 (217)
+..+-.++..+++.+.......+...+........-.....+..++.+++.+++..|+..+.-+..-++.-..+..|+.+
T Consensus 457 l~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~ 536 (1041)
T KOG0243|consen 457 LENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATK 536 (1041)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 027898 187 FLLEYDRLLADNQHLRNQLESID 209 (217)
Q Consensus 187 l~~EYdrL~~e~~~l~~~~~~~~ 209 (217)
++..++.-.++.+.+-..+...+
T Consensus 537 l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 537 LRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
No 494
>PRK14127 cell division protein GpsB; Provisional
Probab=25.53 E-value=87 Score=24.05 Aligned_cols=66 Identities=14% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 139 VDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 139 ~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.++-....+++.++++++..|+.+++..+..+...+......+.+..+-..-||=| ....+|.+.+
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiL-KRls~LEk~V 101 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDIL-KRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHH-HHHHHHHHHH
No 495
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=25.43 E-value=4.6e+02 Score=22.88 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------HHHHHHHHHHHHHHHHHHhhhc
Q 027898 142 RKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEG-------FLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 142 ~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~-------l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
.++...+..-+....++++.|.+.+-..++++++++.-|++++.| -.+|-+-+ +.++..|.+++.+
T Consensus 102 E~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~-~~~~~~q~ele~f 174 (232)
T cd07646 102 EQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYI-EAISNKQGELENY 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH-HHHHHHHHHHHHH
No 496
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.38 E-value=8.6e+02 Score=26.03 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCch--------------------hhhhhhhhhhhhhHHHHHHH
Q 027898 100 LSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNV--------------------DERKGLGDDIATLKTKIKKL 159 (217)
Q Consensus 100 L~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~e~~~L 159 (217)
|.=+.++.-+++.+-..+...+..+..+....=...+..+ .-........+.+..+++.+
T Consensus 344 L~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~ 423 (1200)
T KOG0964|consen 344 LSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDL 423 (1200)
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 160 ESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 160 k~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.+++.+..++++-+.+..-.+-+.+.+..+|..+..+++.++..
T Consensus 424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.30 E-value=6.5e+02 Score=25.34 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhh---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 107 LHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERK---GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQ 183 (217)
Q Consensus 107 ~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~---~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQ 183 (217)
+..+..++...++..+..-.+.++++.....-.+... .....+..+.+...-.++++...+.++...++....++.+
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhh
Q 027898 184 SEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 184 ae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
...+..++.+...+...++.+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 264 VSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.27 E-value=6.1e+02 Score=24.47 Aligned_cols=91 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-hhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 027898 117 LRKAMEAAKK-QTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 117 l~~~~~a~~k-Qa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~ 195 (217)
.+..+..+.+ |.++....-+....+.+....+.+.+..+.+-.+..+.+.+..+++-+++...++.--+.+.+.-|-..
T Consensus 337 ~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~ 416 (493)
T KOG0804|consen 337 YEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWR 416 (493)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHhhh
Q 027898 196 ADNQHLRNQLES 207 (217)
Q Consensus 196 ~e~~~l~~~~~~ 207 (217)
....+++.+...
T Consensus 417 ~kl~~~~e~~~~ 428 (493)
T KOG0804|consen 417 GKLKELEEREKE 428 (493)
T ss_pred HHHHHHHHHHHH
No 499
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.11 E-value=3e+02 Score=20.74 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
|...|..|+.|+ ..+..++.-+..+....+.|.++...+.+
T Consensus 2 l~~ri~eKk~EL----e~L~~l~~lS~~L~~qle~L~~kl~~m~d 42 (103)
T PF08654_consen 2 LQARIAEKKAEL----EALKQLRDLSADLASQLEALSEKLETMAD 42 (103)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=25.04 E-value=2.6e+02 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 159 LESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 159 Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+..-++++++.+...-.+.+..+.+++....+|..-..+
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!