Query 027898
Match_columns 217
No_of_seqs 122 out of 333
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ic2_A Tropomyosin alpha chain 95.1 0.39 1.3E-05 33.6 10.7 55 154-208 20-74 (81)
2 3hnw_A Uncharacterized protein 95.1 0.66 2.3E-05 35.9 12.9 47 153-206 88-134 (138)
3 3u59_A Tropomyosin beta chain; 94.2 0.83 2.8E-05 33.3 11.0 54 154-207 23-76 (101)
4 3hnw_A Uncharacterized protein 93.8 0.45 1.6E-05 36.9 9.3 49 158-206 79-127 (138)
5 3u1c_A Tropomyosin alpha-1 cha 93.2 1.7 5.7E-05 31.7 11.0 54 154-207 23-76 (101)
6 2yy0_A C-MYC-binding protein; 92.8 0.23 8E-06 32.3 5.2 32 176-207 20-51 (53)
7 3a7p_A Autophagy protein 16; c 92.4 0.92 3.1E-05 35.7 9.1 55 148-202 76-130 (152)
8 2jee_A YIIU; FTSZ, septum, coi 91.2 2.9 9.9E-05 29.5 10.3 50 150-206 23-72 (81)
9 3q8t_A Beclin-1; autophagy, AT 91.0 2.5 8.5E-05 30.6 9.6 52 152-203 23-74 (96)
10 3qh9_A Liprin-beta-2; coiled-c 90.6 1.6 5.6E-05 30.7 7.9 53 145-197 24-76 (81)
11 2dfs_A Myosin-5A; myosin-V, in 90.5 1.1 3.9E-05 45.3 9.9 37 168-204 984-1020(1080)
12 3vkg_A Dynein heavy chain, cyt 89.0 4.6 0.00016 45.4 13.8 54 154-207 2014-2067(3245)
13 3a7o_A Autophagy protein 16; c 88.8 4.3 0.00015 27.8 9.1 56 152-207 16-71 (75)
14 3mq7_A Bone marrow stromal ant 88.6 6.3 0.00022 29.6 11.0 25 105-129 25-49 (121)
15 3oja_B Anopheles plasmodium-re 87.7 13 0.00043 34.2 14.3 51 156-206 525-575 (597)
16 3na7_A HP0958; flagellar bioge 87.2 7.1 0.00024 32.6 11.3 52 155-206 91-142 (256)
17 2dfs_A Myosin-5A; myosin-V, in 85.9 6.6 0.00022 39.8 12.0 29 156-184 986-1014(1080)
18 3cl3_D NF-kappa-B essential mo 85.3 5.2 0.00018 30.5 8.3 53 154-206 55-108 (130)
19 3na7_A HP0958; flagellar bioge 84.7 14 0.00047 30.8 11.8 19 174-192 131-149 (256)
20 3a7p_A Autophagy protein 16; c 84.3 8.2 0.00028 30.3 9.3 17 178-194 113-129 (152)
21 3q8t_A Beclin-1; autophagy, AT 83.3 11 0.00036 27.2 9.2 53 154-206 39-91 (96)
22 3ol1_A Vimentin; structural ge 82.7 13 0.00043 27.7 11.4 21 178-198 86-106 (119)
23 4h22_A Leucine-rich repeat fli 81.8 8.4 0.00029 28.3 7.9 47 148-194 31-77 (103)
24 3viq_B Mating-type switching p 81.2 4.2 0.00014 28.9 6.0 50 152-203 6-55 (85)
25 4dzn_A Coiled-coil peptide CC- 80.5 3.6 0.00012 23.3 4.3 21 150-170 5-25 (33)
26 3s4r_A Vimentin; alpha-helix, 80.4 13 0.00046 26.4 11.3 24 104-127 15-38 (93)
27 1ic2_A Tropomyosin alpha chain 80.0 12 0.00042 25.8 8.7 51 155-205 7-57 (81)
28 3nmd_A CGMP dependent protein 79.4 6.8 0.00023 26.9 6.4 15 156-170 21-35 (72)
29 2v71_A Nuclear distribution pr 79.0 24 0.00082 28.6 13.0 22 184-205 90-111 (189)
30 3mq9_A Bone marrow stromal ant 77.9 9.9 0.00034 34.0 9.0 28 105-132 397-424 (471)
31 2oto_A M protein; helical coil 75.7 13 0.00045 28.7 8.0 16 179-194 68-83 (155)
32 3i00_A HIP-I, huntingtin-inter 74.5 24 0.00083 26.4 8.9 56 148-206 16-78 (120)
33 3cve_A Homer protein homolog 1 74.4 18 0.00062 24.8 9.3 55 154-208 14-68 (72)
34 3oja_B Anopheles plasmodium-re 74.0 53 0.0018 29.9 14.3 25 178-202 554-578 (597)
35 1t6f_A Geminin; coiled-coil, c 72.7 8.4 0.00029 22.9 4.6 17 154-170 7-23 (37)
36 3i00_A HIP-I, huntingtin-inter 71.7 29 0.00099 26.0 9.7 34 152-185 45-78 (120)
37 3cvf_A Homer-3, homer protein 71.5 23 0.00078 24.7 9.3 57 152-208 18-74 (79)
38 2jee_A YIIU; FTSZ, septum, coi 70.8 24 0.00083 24.7 8.3 29 178-206 37-65 (81)
39 4dzn_A Coiled-coil peptide CC- 70.0 12 0.00043 21.1 4.9 17 154-170 2-18 (33)
40 1t3j_A Mitofusin 1; coiled coi 69.9 21 0.00071 25.8 7.2 42 152-197 52-93 (96)
41 4emc_A Monopolin complex subun 69.5 22 0.00075 28.8 8.0 35 150-184 23-57 (190)
42 1g6u_A Domain swapped dimer; d 67.0 19 0.00064 21.9 6.5 17 154-170 20-36 (48)
43 1gd2_E Transcription factor PA 66.5 16 0.00056 24.8 5.8 36 155-190 30-65 (70)
44 3vkg_A Dynein heavy chain, cyt 65.9 40 0.0014 38.2 11.6 57 150-206 2017-2073(3245)
45 4etp_A Kinesin-like protein KA 65.4 24 0.00083 31.5 8.4 38 150-187 6-43 (403)
46 2v71_A Nuclear distribution pr 65.0 54 0.0018 26.5 10.7 9 114-122 26-34 (189)
47 1m1j_C Fibrinogen gamma chain; 63.4 85 0.0029 28.2 12.1 51 154-204 84-134 (409)
48 4ani_A Protein GRPE; chaperone 63.3 14 0.00048 30.5 5.9 37 149-185 61-97 (213)
49 3ghg_A Fibrinogen alpha chain; 63.0 99 0.0034 28.9 12.0 13 196-208 176-188 (562)
50 2yy0_A C-MYC-binding protein; 62.6 14 0.00049 23.6 4.7 13 152-164 24-36 (53)
51 3w03_C DNA repair protein XRCC 62.1 9.9 0.00034 30.7 4.7 29 178-206 155-183 (184)
52 3iox_A AGI/II, PA; alpha helix 61.7 79 0.0027 29.3 11.1 23 174-200 72-94 (497)
53 3bas_A Myosin heavy chain, str 61.5 39 0.0013 23.7 7.4 41 154-194 14-54 (89)
54 2wt7_B Transcription factor MA 60.6 24 0.00081 25.2 5.9 6 178-183 79-84 (90)
55 3u06_A Protein claret segregat 60.1 31 0.001 31.0 8.1 39 150-188 6-44 (412)
56 3q0x_A Centriole protein; cent 60.0 35 0.0012 28.3 7.9 46 152-197 176-221 (228)
57 1ci6_A Transcription factor AT 59.8 33 0.0011 22.5 6.3 17 178-194 40-56 (63)
58 1s94_A S-syntaxin; three helix 59.3 60 0.0021 25.2 12.1 27 179-205 123-149 (180)
59 2w6b_A RHO guanine nucleotide 58.2 34 0.0012 22.1 5.8 26 146-171 9-34 (56)
60 1lwu_C Fibrinogen gamma chain; 58.1 33 0.0011 30.0 7.7 39 167-205 18-56 (323)
61 2efr_A General control protein 57.9 65 0.0022 25.1 11.4 35 155-189 78-112 (155)
62 3oja_A Leucine-rich immune mol 57.9 1E+02 0.0035 27.4 11.8 8 180-187 440-447 (487)
63 4gkw_A Spindle assembly abnorm 57.5 63 0.0021 24.8 9.4 25 177-201 48-72 (167)
64 4h22_A Leucine-rich repeat fli 57.1 54 0.0018 23.9 9.7 58 150-207 26-83 (103)
65 1deb_A APC protein, adenomatou 56.6 36 0.0012 21.7 6.6 38 150-187 13-50 (54)
66 2wt7_A Proto-oncogene protein 56.1 38 0.0013 22.1 6.1 16 178-193 40-55 (63)
67 1wlq_A Geminin; coiled-coil; 2 54.7 38 0.0013 23.8 6.1 17 154-170 38-54 (83)
68 3u59_A Tropomyosin beta chain; 54.6 55 0.0019 23.3 9.7 13 158-170 48-60 (101)
69 3bas_A Myosin heavy chain, str 54.3 52 0.0018 22.9 8.9 33 174-206 48-80 (89)
70 3okq_A BUD site selection prot 54.1 24 0.00081 27.3 5.4 38 162-199 55-100 (141)
71 1wle_A Seryl-tRNA synthetase; 53.9 75 0.0026 29.3 9.8 25 178-202 119-143 (501)
72 3tul_A Cell invasion protein S 53.5 77 0.0026 24.6 10.4 34 100-133 6-41 (158)
73 2fxo_A Myosin heavy chain, car 53.3 67 0.0023 23.9 8.5 35 155-189 14-48 (129)
74 3trt_A Vimentin; cytoskeleton, 53.3 48 0.0016 22.2 6.9 41 154-194 35-75 (77)
75 3mq7_A Bone marrow stromal ant 53.0 69 0.0024 23.9 7.9 30 156-185 73-102 (121)
76 2l5g_B Putative uncharacterize 52.7 35 0.0012 20.9 4.9 29 153-188 8-36 (42)
77 3tnu_B Keratin, type II cytosk 52.7 68 0.0023 23.7 9.6 24 178-201 92-115 (129)
78 3l4q_C Phosphatidylinositol 3- 52.6 29 0.00099 27.6 5.9 29 178-206 20-48 (170)
79 2lw1_A ABC transporter ATP-bin 52.5 55 0.0019 22.7 8.0 54 148-201 23-82 (89)
80 1ses_A Seryl-tRNA synthetase; 52.5 35 0.0012 30.7 7.1 10 179-188 68-77 (421)
81 3o0z_A RHO-associated protein 52.2 86 0.0029 24.8 13.0 58 150-207 93-154 (168)
82 1hs7_A Syntaxin VAM3; UP-and-D 52.2 63 0.0021 23.2 9.5 51 151-206 37-88 (97)
83 1uii_A Geminin; human, DNA rep 51.2 59 0.002 22.8 6.6 35 169-203 40-74 (83)
84 3oja_A Leucine-rich immune mol 50.8 1.3E+02 0.0046 26.6 12.7 18 174-191 441-458 (487)
85 3m9b_A Proteasome-associated A 50.5 17 0.00058 30.7 4.4 16 186-201 79-94 (251)
86 3tnu_A Keratin, type I cytoske 50.4 75 0.0026 23.6 9.1 26 176-201 92-117 (131)
87 2xv5_A Lamin-A/C; structural p 50.1 58 0.002 22.2 7.8 42 155-203 6-47 (74)
88 4b4t_K 26S protease regulatory 50.0 25 0.00086 31.7 5.8 43 154-203 49-91 (428)
89 4ani_A Protein GRPE; chaperone 49.5 35 0.0012 28.1 6.1 29 178-206 69-97 (213)
90 3m91_A Proteasome-associated A 48.6 49 0.0017 21.0 6.2 29 152-187 21-49 (51)
91 1t2k_D Cyclic-AMP-dependent tr 46.7 56 0.0019 21.0 6.0 14 178-191 39-52 (61)
92 3u0c_A Invasin IPAB, 62 kDa an 46.1 1.1E+02 0.0038 24.3 10.2 28 100-127 54-83 (201)
93 2inr_A DNA topoisomerase 4 sub 46.1 1.9E+02 0.0064 26.9 11.5 22 92-114 398-419 (514)
94 3v1a_A Computational design, M 46.0 27 0.00093 22.0 3.8 20 176-195 28-47 (48)
95 1go4_E MAD1 (mitotic arrest de 45.8 35 0.0012 24.8 4.9 27 180-206 17-43 (100)
96 3qne_A Seryl-tRNA synthetase, 45.7 72 0.0025 29.4 8.2 20 179-198 75-94 (485)
97 3azd_A Short alpha-tropomyosin 45.1 10 0.00035 22.5 1.6 28 178-205 7-34 (37)
98 2wt7_A Proto-oncogene protein 44.8 62 0.0021 21.0 6.9 28 178-205 33-60 (63)
99 1use_A VAsp, vasodilator-stimu 44.7 54 0.0019 20.3 5.8 11 165-175 19-29 (45)
100 3etw_A Adhesin A; antiparallel 44.1 98 0.0033 23.1 12.0 44 155-206 45-88 (119)
101 2dq0_A Seryl-tRNA synthetase; 43.9 75 0.0026 28.8 8.0 22 179-200 73-94 (455)
102 1nkp_B MAX protein, MYC proto- 43.9 64 0.0022 21.9 5.9 30 178-207 50-79 (83)
103 1go4_E MAD1 (mitotic arrest de 43.3 82 0.0028 22.8 6.6 20 189-208 75-94 (100)
104 3plt_A Sphingolipid long chain 43.3 1.4E+02 0.0049 24.8 11.3 40 155-194 132-173 (234)
105 3aon_A V-type sodium ATPase su 43.3 85 0.0029 25.4 7.6 48 153-207 16-63 (217)
106 1s1c_X RHO-associated, coiled- 43.2 36 0.0012 23.2 4.4 30 152-181 4-33 (71)
107 1afo_A Glycophorin A; integral 43.1 19 0.00064 21.8 2.5 17 91-107 21-37 (40)
108 4etp_A Kinesin-like protein KA 42.8 70 0.0024 28.5 7.5 14 157-170 6-19 (403)
109 3swk_A Vimentin; cytoskeleton, 42.7 83 0.0028 21.9 9.3 17 171-187 45-61 (86)
110 1t2k_D Cyclic-AMP-dependent tr 41.8 67 0.0023 20.6 6.8 26 178-203 32-57 (61)
111 2wt7_B Transcription factor MA 41.4 66 0.0023 22.8 5.7 24 178-201 65-88 (90)
112 2lw1_A ABC transporter ATP-bin 41.1 86 0.003 21.6 7.2 47 153-206 21-73 (89)
113 4e61_A Protein BIM1; EB1-like 40.9 88 0.003 22.9 6.4 13 178-190 28-40 (106)
114 1wt6_A Myotonin-protein kinase 40.7 90 0.0031 21.7 8.1 27 178-204 41-67 (81)
115 4e61_A Protein BIM1; EB1-like 40.7 1E+02 0.0034 22.6 6.7 10 155-164 19-28 (106)
116 3rrk_A V-type ATPase 116 kDa s 40.5 1.1E+02 0.0038 26.1 8.3 48 154-201 226-274 (357)
117 1zxa_A CGMP-dependent protein 40.1 47 0.0016 22.4 4.5 33 152-191 23-55 (67)
118 3a5c_G V-type ATP synthase sub 39.8 1E+02 0.0035 25.1 7.6 47 154-207 9-55 (223)
119 2v4h_A NF-kappa-B essential mo 39.8 1.1E+02 0.0038 22.5 11.3 19 187-205 88-106 (110)
120 2fxo_A Myosin heavy chain, car 39.8 1.1E+02 0.0038 22.6 9.3 11 178-188 72-82 (129)
121 1ez3_A Syntaxin-1A; three heli 39.6 1E+02 0.0035 22.1 15.1 26 178-203 91-116 (127)
122 1jnm_A Proto-oncogene C-JUN; B 38.8 77 0.0026 20.4 5.5 8 180-187 41-48 (62)
123 1x8y_A Lamin A/C; structural p 38.6 96 0.0033 21.4 7.9 38 167-204 34-71 (86)
124 3viq_B Mating-type switching p 38.5 59 0.002 22.9 5.0 57 148-206 9-65 (85)
125 1nlw_A MAD protein, MAX dimeri 38.0 88 0.003 21.4 5.9 29 178-206 50-78 (80)
126 1uii_A Geminin; human, DNA rep 38.0 88 0.003 21.9 5.8 17 154-170 46-62 (83)
127 1gmj_A ATPase inhibitor; coile 37.8 1E+02 0.0035 21.6 7.2 17 178-194 54-70 (84)
128 2kxh_B Peptide of FAR upstream 37.8 17 0.00059 20.7 1.7 14 55-68 9-22 (31)
129 1wlq_A Geminin; coiled-coil; 2 37.7 71 0.0024 22.4 5.3 24 178-201 41-64 (83)
130 2wvr_A Geminin; DNA replicatio 37.7 81 0.0028 25.8 6.4 44 155-198 116-162 (209)
131 1uix_A RHO-associated kinase; 37.4 47 0.0016 22.6 4.2 21 178-198 14-34 (71)
132 3tnu_A Keratin, type I cytoske 37.3 1.2E+02 0.0042 22.4 11.9 22 179-200 88-109 (131)
133 2ke4_A CDC42-interacting prote 36.7 1.1E+02 0.0039 21.8 8.3 54 155-208 16-88 (98)
134 3sjb_C Golgi to ER traffic pro 36.7 88 0.003 22.4 5.7 19 152-170 54-72 (93)
135 4emc_A Monopolin complex subun 36.2 1.7E+02 0.0058 23.6 9.1 37 155-191 21-57 (190)
136 3plt_A Sphingolipid long chain 36.2 1.9E+02 0.0064 24.1 8.9 37 153-189 117-159 (234)
137 3v86_A De novo design helix; c 35.9 45 0.0015 17.9 3.1 16 148-163 8-23 (27)
138 1nlw_A MAD protein, MAX dimeri 35.5 59 0.002 22.3 4.6 8 178-185 71-78 (80)
139 3q0x_A Centriole protein; cent 35.3 1.9E+02 0.0065 23.9 8.9 53 152-204 169-221 (228)
140 1dkg_A Nucleotide exchange fac 35.0 62 0.0021 26.0 5.4 34 152-185 40-77 (197)
141 2dq3_A Seryl-tRNA synthetase; 34.6 1E+02 0.0036 27.5 7.4 17 111-127 43-59 (425)
142 3s9g_A Protein hexim1; cyclin 34.6 1.3E+02 0.0044 21.8 9.2 55 152-206 35-89 (104)
143 2wvr_A Geminin; DNA replicatio 34.6 1.1E+02 0.0036 25.1 6.6 39 165-203 105-143 (209)
144 1jnm_A Proto-oncogene C-JUN; B 34.4 69 0.0023 20.7 4.6 20 180-199 34-53 (62)
145 1nkp_B MAX protein, MYC proto- 34.3 57 0.002 22.2 4.4 7 178-184 71-77 (83)
146 1fio_A SSO1 protein; four heli 33.7 1.6E+02 0.0056 22.6 11.9 24 180-203 82-105 (196)
147 1ykh_B RNA polymerase II holoe 33.2 86 0.0029 23.5 5.6 34 154-187 92-125 (132)
148 2dq3_A Seryl-tRNA synthetase; 33.1 1.3E+02 0.0044 26.9 7.7 24 104-127 29-52 (425)
149 3lss_A Seryl-tRNA synthetase; 33.0 1.9E+02 0.0065 26.5 8.9 17 178-194 114-130 (484)
150 2avr_X Adhesion A; antiparalle 32.8 1.5E+02 0.0052 22.0 12.1 43 156-199 46-88 (119)
151 1gmj_A ATPase inhibitor; coile 32.7 1.3E+02 0.0043 21.1 6.9 10 178-187 68-77 (84)
152 3ol1_A Vimentin; structural ge 32.7 1.4E+02 0.0049 21.7 8.6 79 116-201 17-102 (119)
153 1nfn_A Apolipoprotein E3; lipi 32.5 92 0.0032 24.7 6.0 55 152-206 104-160 (191)
154 1yke_B RNA polymerase II holoe 32.4 86 0.003 24.2 5.6 34 154-187 92-125 (151)
155 1hjb_A Ccaat/enhancer binding 32.2 1.3E+02 0.0044 21.1 6.1 18 178-195 53-70 (87)
156 1gk6_A Vimentin; intermediate 32.0 1E+02 0.0035 19.8 5.6 25 178-202 17-41 (59)
157 3swy_A Cyclic nucleotide-gated 31.8 93 0.0032 19.3 5.2 22 184-205 14-35 (46)
158 1qzv_F Plant photosystem I: su 31.7 19 0.00063 27.7 1.5 40 152-195 18-57 (154)
159 3ra3_B P2F; coiled coil domain 31.5 66 0.0022 17.4 3.6 19 152-170 5-23 (28)
160 3m9b_A Proteasome-associated A 31.5 74 0.0025 26.8 5.4 8 178-185 85-92 (251)
161 2zxx_A Geminin; coiled-coil, c 31.1 1.2E+02 0.0041 21.0 5.5 17 154-170 34-50 (79)
162 2xdj_A Uncharacterized protein 30.7 1.2E+02 0.0039 21.1 5.5 17 178-194 51-67 (83)
163 3o0z_A RHO-associated protein 30.6 2E+02 0.0068 22.7 9.7 12 183-194 98-109 (168)
164 1wt6_A Myotonin-protein kinase 30.2 1.4E+02 0.0048 20.8 8.8 7 178-184 62-68 (81)
165 2ve7_A Kinetochore protein HEC 30.1 59 0.002 28.0 4.7 21 150-170 188-208 (315)
166 2no2_A HIP-I, huntingtin-inter 30.1 1.6E+02 0.0054 21.3 11.1 39 156-194 56-101 (107)
167 1gd2_E Transcription factor PA 29.8 1.3E+02 0.0044 20.2 5.9 28 178-205 39-66 (70)
168 2v4h_A NF-kappa-B essential mo 29.8 1.7E+02 0.0057 21.5 9.3 50 154-207 45-101 (110)
169 3cvf_A Homer-3, homer protein 29.6 1.4E+02 0.0048 20.6 6.9 49 148-196 21-69 (79)
170 2ve7_C Kinetochore protein NUF 29.1 79 0.0027 26.3 5.2 17 154-170 162-178 (250)
171 1lwu_C Fibrinogen gamma chain; 29.1 1.9E+02 0.0066 25.0 7.9 39 156-194 14-52 (323)
172 2c0s_A Conserved domain protei 29.0 90 0.0031 20.6 4.5 18 187-204 34-51 (64)
173 2j5u_A MREC protein; bacterial 28.9 32 0.0011 28.7 2.7 18 190-207 44-61 (255)
174 2b5u_A Colicin E3; high resolu 28.8 3.6E+02 0.012 25.1 9.9 50 156-205 316-365 (551)
175 3a7o_A Autophagy protein 16; c 28.7 1.4E+02 0.0047 20.3 7.7 43 154-203 32-74 (75)
176 1jcd_A Major outer membrane li 28.3 1.2E+02 0.004 19.3 7.2 19 152-170 9-27 (52)
177 1t3j_A Mitofusin 1; coiled coi 28.1 1.7E+02 0.0057 21.0 7.2 13 158-170 51-63 (96)
178 3swf_A CGMP-gated cation chann 27.8 1.4E+02 0.0046 20.5 5.3 15 178-192 17-31 (74)
179 1x8y_A Lamin A/C; structural p 27.8 1.5E+02 0.0051 20.4 9.3 18 179-196 63-80 (86)
180 3s4r_A Vimentin; alpha-helix, 27.4 1.6E+02 0.0055 20.6 11.9 22 104-125 22-43 (93)
181 1nkp_A C-MYC, MYC proto-oncoge 27.4 1.5E+02 0.0053 20.4 5.9 29 178-206 55-83 (88)
182 2zdi_C Prefoldin subunit alpha 27.3 2E+02 0.0067 21.6 7.5 43 158-207 102-144 (151)
183 3tnu_B Keratin, type II cytosk 27.3 1.8E+02 0.0063 21.3 12.8 23 179-201 86-108 (129)
184 3he5_B Synzip2; heterodimeric 27.0 1.1E+02 0.0039 18.7 6.4 23 174-196 23-45 (52)
185 2ocy_A RAB guanine nucleotide 26.9 2.2E+02 0.0076 22.0 12.2 26 106-131 7-32 (154)
186 2k48_A Nucleoprotein; viral pr 26.3 1.9E+02 0.0065 21.1 9.4 57 150-206 38-99 (107)
187 2eqb_B RAB guanine nucleotide 26.1 1.8E+02 0.0063 20.8 9.1 17 190-206 77-93 (97)
188 1gu4_A CAAT/enhancer binding p 26.0 1.6E+02 0.0055 20.1 5.7 16 178-193 53-68 (78)
189 3s84_A Apolipoprotein A-IV; fo 25.9 2.9E+02 0.0099 23.1 9.2 37 155-191 45-82 (273)
190 2khk_A ATP synthase subunit B; 25.7 33 0.0011 21.1 1.8 22 176-197 17-38 (53)
191 3qwe_A GMIP, GEM-interacting p 25.5 1.9E+02 0.0065 24.5 7.0 12 191-202 142-153 (279)
192 3rvy_A ION transport protein; 25.4 50 0.0017 27.3 3.3 25 91-115 214-239 (285)
193 4ad8_A DNA repair protein RECN 25.1 2E+02 0.0069 25.8 7.7 26 178-203 210-241 (517)
194 4dk0_A Putative MACA; alpha-ha 24.8 2.1E+02 0.0073 24.0 7.4 15 113-127 71-85 (369)
195 1avy_A Fibritin, gpwac M; bact 24.3 1.7E+02 0.0058 19.8 5.4 29 154-182 15-43 (74)
196 1fxk_C Protein (prefoldin); ar 24.3 2.1E+02 0.0071 20.8 7.4 26 178-203 105-130 (133)
197 2bzb_A Conserved domain protei 23.9 1.5E+02 0.0051 19.4 4.8 17 187-203 34-50 (62)
198 2xnx_M M protein, M1-BC1; cell 23.6 2.5E+02 0.0087 21.6 7.2 33 162-194 74-106 (146)
199 2oto_A M protein; helical coil 23.5 2.4E+02 0.0082 21.3 9.8 12 113-124 30-41 (155)
200 3ghg_A Fibrinogen alpha chain; 23.5 4.6E+02 0.016 24.5 10.7 36 158-193 114-149 (562)
201 3efg_A Protein SLYX homolog; x 23.4 1.8E+02 0.0061 19.8 7.3 46 154-206 14-59 (78)
202 1gk4_A Vimentin; intermediate 22.9 1.8E+02 0.0063 19.7 11.2 28 177-204 42-69 (84)
203 3sjb_C Golgi to ER traffic pro 22.6 2.1E+02 0.0073 20.3 6.8 37 154-197 49-85 (93)
204 2wuj_A Septum site-determining 22.4 96 0.0033 19.7 3.5 17 190-206 35-51 (57)
205 1f5n_A Interferon-induced guan 22.3 4.8E+02 0.016 24.3 10.9 19 186-204 564-582 (592)
206 2f1m_A Acriflavine resistance 21.9 3.1E+02 0.011 21.9 7.9 74 110-187 58-131 (277)
207 1l8d_A DNA double-strand break 21.5 2.1E+02 0.0073 20.0 6.6 36 157-192 67-102 (112)
208 2no2_A HIP-I, huntingtin-inter 20.9 2.4E+02 0.0082 20.3 7.9 14 110-123 6-19 (107)
209 2xcs_B DNA gyrase subunit B, D 20.7 5.7E+02 0.019 24.6 11.8 22 92-114 581-602 (692)
210 4dk0_A Putative MACA; alpha-ha 20.5 3.3E+02 0.011 22.7 7.8 10 178-187 132-141 (369)
211 3r2p_A Apolipoprotein A-I; amp 20.4 3E+02 0.01 21.2 7.8 53 154-206 111-165 (185)
212 3he4_A Synzip6; heterodimeric 20.3 1.7E+02 0.0057 18.2 5.3 10 178-187 41-50 (56)
No 1
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.10 E-value=0.39 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+..+.++..++..++....++.++.+|++...+++.++|+..+.....+.+|...
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888999999999999999999999999999888864
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.08 E-value=0.66 Score=35.92 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+++..|+.++...+.++ +.++++.+.+.++++.|..+..+|+..+.
T Consensus 88 ~kE~~~lK~el~~~~~k~-------e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKA-------ESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444 77777777777777777777777766655
No 3
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.25 E-value=0.83 Score=33.28 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
...+.++.+++..+....+.+.++.+|++...+++.++|+..+....++.++..
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666766667777777788999999999999999988888877776654
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.80 E-value=0.45 Score=36.87 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.|+.+++.+++++..-+.++..++-+.+++.++...|.++++.|+.+..
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333455555666666666666666655555443
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.16 E-value=1.7 Score=31.71 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
...+.++.+++..+....+++.++.+|.+...++..+.|+..+.....+.++..
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677777777999999999999999888887777766654
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.80 E-value=0.23 Score=32.32 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=22.4
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 176 EAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
|+++||..-+.|+..|+.|.++++.+++++..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44666666666777777777777777777663
No 7
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.92 Score=35.74 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=42.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
+...+..++..++.+++.+.+.+..-+.+..+|.-|..-++..-.+|.+||..|=
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888877788888888888888777777777776653
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.16 E-value=2.9 Score=29.48 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+-+..++++||.+-.....+. +.++...+.+..+..+|.+|++.-++.+.
T Consensus 23 ~lLqmEieELKekN~~L~~e~-------~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEV-------QNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444433 66777777788888888888877666655
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.97 E-value=2.5 Score=30.58 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+-.++++|+++=+..+.+|...+.+...|..|-+..-++|+.+.-+.-..++
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666555555566666666666666544444433333
No 10
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=90.62 E-value=1.6 Score=30.68 Aligned_cols=53 Identities=30% Similarity=0.317 Sum_probs=43.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 145 LGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 145 ~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
..-++..++-.+++++.|=-+.++.|++.+.++..|+.|.++=..|..||.++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44456667778888888888888899888899999999999999988888655
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.51 E-value=1.1 Score=45.32 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 168 KEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 168 kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
..+...+.+.+.++++.+.+.+|++.+.+++++++++
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~ 1020 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555444433
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.04 E-value=4.6 Score=45.43 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+++++++.+++..++++..+++.+..+..+.+.++.+|+....|.+.++.+.+.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888889999999999999998888888777653
No 13
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=88.76 E-value=4.3 Score=27.84 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+..-+..|+++|+.++.+|..-+.-..-=-|-+|.|+.|.=.+.=|++-|+++++.
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 44567788888888888885554333333344666666666666677788887763
No 14
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.57 E-value=6.3 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTR 129 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~ 129 (217)
+..+.+=.+|-..++.+.....||.
T Consensus 25 N~T~lLq~qLTqAQe~l~~~eaQAa 49 (121)
T 3mq7_A 25 NVTHLLQQELTEAQKGFQDVEAQAA 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444433
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.73 E-value=13 Score=34.17 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++.+++++++.++++..+++.+.++++.+...+...++.+|.+.++.++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444454555555555555566666666666666666666555544433
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.22 E-value=7.1 Score=32.61 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+.|.++++..++++...+.+...+-.+.+.++.+.+.+.++...++..+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555556666666666666555555555544
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.92 E-value=6.6 Score=39.80 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
+..|+.+++..++++.+..++.+.++...
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 18
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=85.27 E-value=5.2 Score=30.48 Aligned_cols=53 Identities=9% Similarity=0.241 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH-HHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL-RNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l-~~~~~ 206 (217)
-.+++|+-+.++.+.+|+-.+.-...=|.....|+..|+.|..||++. +..+.
T Consensus 55 ~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~ 108 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776666656667889999999999999999874 44443
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.69 E-value=14 Score=30.82 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=7.0
Q ss_pred HHHHHHHHHhHhhHHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYd 192 (217)
+..++.++...+....++|
T Consensus 131 ~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 131 KKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 20
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.35 E-value=8.2 Score=30.27 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=8.3
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
..+......+++|++.|
T Consensus 113 n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555433
No 21
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.31 E-value=11 Score=27.18 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+++.++.+.+..+.+=..--.+..+++-|.-.++.+-+.+...+...+.++.
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333233334445555555555555555555544444444
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.72 E-value=13 Score=27.69 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=10.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~ 198 (217)
..|..|+++|..|-+=|..-|
T Consensus 86 ~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566655555554434
No 23
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.76 E-value=8.4 Score=28.29 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
+++.++..+++++..+....++.+-..++++.+|.+...|+.+++-|
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444445566665555554444443
No 24
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=81.19 E-value=4.2 Score=28.92 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+..+++.|+.++...++++..+++... ...++...+.|=+++-+|+.+++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~--~~~~~~~~~~hI~~Lh~YNeiKD 55 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLK--NRDAKQTVQKHIDLLHTYNEIRD 55 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhHHHH
Confidence 556666666666666666633322110 00133334555555666666654
No 25
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=80.50 E-value=3.6 Score=23.30 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel 170 (217)
..+++|+..|++|+...+=++
T Consensus 5 aalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544443333
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.38 E-value=13 Score=26.44 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 104 MDRLHHYIRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~kQ 127 (217)
=+|+.++|...-.++.....+..+
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~ 38 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAE 38 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777666655433
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.02 E-value=12 Score=25.76 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
++..|+.+.+.....+..++.++....+.+.....+++.|....+.+.+++
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444433
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.43 E-value=6.8 Score=26.94 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEA 170 (217)
Q Consensus 156 ~~~Lk~el~~~~kel 170 (217)
+.+|+..++.++.+|
T Consensus 21 i~eLq~~L~~K~eEL 35 (72)
T 3nmd_A 21 LRDLQYALQEKIEEL 35 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555555
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.05 E-value=24 Score=28.56 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=12.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHh
Q 027898 184 SEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 184 ae~l~~EYdrL~~e~~~l~~~~ 205 (217)
...|+++...|.+.+..++.++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666655554433
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.94 E-value=9.9 Score=34.03 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027898 105 DRLHHYIRELRLLRKAMEAAKKQTRSFE 132 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~ 132 (217)
++...|-++|..++++...+++||.+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 6666777888888888888888877664
No 31
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=75.70 E-value=13 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=6.6
Q ss_pred HHHHhHhhHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRL 194 (217)
Q Consensus 179 aLKkQae~l~~EYdrL 194 (217)
.|++..+++..+|+.+
T Consensus 68 ~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 68 DLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 32
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.53 E-value=24 Score=26.40 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH-------HHHHHHHHHHhh
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL-------LADNQHLRNQLE 206 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL-------~~e~~~l~~~~~ 206 (217)
.|+.|..+++.|+.+++...-+- +.-+..|+.|+..|+.|.+.- ..|++.|+.+++
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~---q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTES---QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777554433 445678888888888877654 344566665555
No 33
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.37 E-value=18 Score=24.77 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
.++..|+..+...+..+..++.+-+.++...+.+..-.|.-..|...++..+..-
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4455666666666677777777778899999999888998888988888887753
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.98 E-value=53 Score=29.94 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=9.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
+..|++.+-+..|-+.+..|..++.
T Consensus 554 ~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 554 DNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 35
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=72.66 E-value=8.4 Score=22.87 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
.|.++|-++|+.++.+|
T Consensus 7 ~ENekLhk~ie~KdeeI 23 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEI 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888999888888
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.67 E-value=29 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSE 185 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae 185 (217)
+.+.+..|+.++.........|..|.+-|+.+.+
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444433333333444444433
No 37
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.54 E-value=23 Score=24.69 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
+..++..|+..+...+.++..++.+-+.++...+.+..-.|.-..|...++..+..-
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344566677777777777777777778899999999888888888888888877753
No 38
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=70.82 E-value=24 Score=24.69 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=15.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.+|..+.+.+...-+.|-.++++|+.+.+
T Consensus 37 ~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 37 NSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444444444444446667777766554
No 39
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=70.05 E-value=12 Score=21.06 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+|+..|++|+...++++
T Consensus 2 geiaalkqeiaalkkei 18 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEI 18 (33)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 36677787777777777
No 40
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=69.87 E-value=21 Score=25.83 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
+..|+++|.++|...+. .......||..|..|..|-++-.+.
T Consensus 52 L~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666654333 3344466776666666666555443
No 41
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.49 E-value=22 Score=28.81 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS 184 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa 184 (217)
+.+..|+..|..+++.++.+++.-+..++.++.|.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666666666666666633333334444444
No 42
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=66.99 E-value=19 Score=21.94 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+|+..|+.|+...++.+
T Consensus 20 eelaaleselqalekkl 36 (48)
T 1g6u_A 20 EELAALESELQALEKKL 36 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666777776666666
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.53 E-value=16 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE 190 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E 190 (217)
.+++|+.++...+........+.+.|+.|...|+.|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444433344445555555555444
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.91 E-value=40 Score=38.18 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.+.+++++.+.++++++.+|...++.++.|+.+.+...+|-.+|.++-+..+.+++
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555544444444
No 45
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.45 E-value=24 Score=31.54 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
..+.++++.|+.+.++.+++++..+.+.+.++.+...-
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667777777666666655555555555544333
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.95 E-value=54 Score=26.47 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027898 114 LRLLRKAME 122 (217)
Q Consensus 114 l~~l~~~~~ 122 (217)
+..++..++
T Consensus 26 ~~~le~El~ 34 (189)
T 2v71_A 26 FQEARDELV 34 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333343333
No 47
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.35 E-value=85 Score=28.23 Aligned_cols=51 Identities=16% Similarity=0.033 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
++.+++..++...+..+...+..+..|+.+.+.++...+.|......+...
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455566666666666666667777888888888877777776665555543
No 48
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=63.34 E-value=14 Score=30.47 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 027898 149 IATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSE 185 (217)
Q Consensus 149 ~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae 185 (217)
+..+..++++|+.+++..+..+.++.+|++.+|+.++
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666776666666666666777777766554
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.99 E-value=99 Score=28.92 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhc
Q 027898 196 ADNQHLRNQLESI 208 (217)
Q Consensus 196 ~e~~~l~~~~~~~ 208 (217)
+.|+.+|+||+..
T Consensus 176 ~sY~~~QKQLeQv 188 (562)
T 3ghg_A 176 KDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577788887754
No 50
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.63 E-value=14 Score=23.61 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECE 164 (217)
Q Consensus 152 l~~e~~~Lk~el~ 164 (217)
++.|+++|+.+++
T Consensus 24 Lk~E~~eLk~k~~ 36 (53)
T 2yy0_A 24 LRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 51
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=62.06 E-value=9.9 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..|+.+.+.+++++|||..|.++.+.+++
T Consensus 155 ~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 155 AENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888889999999999999999988875
No 52
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=61.73 E-value=79 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
++|+++-+++ .++|+.-+..|+.
T Consensus 72 ~~dlakY~~~----~AeY~~kl~aYe~ 94 (497)
T 3iox_A 72 QADLAKYQKD----LADYPVKLKAYED 94 (497)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4444555554 4555554444543
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.50 E-value=39 Score=23.66 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
+++.+++.++......+.+.+....-|..+...+..+++.|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444555444444455555544444444444
No 54
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.57 E-value=24 Score=25.22 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.5
Q ss_pred HHHHHh
Q 027898 178 EALKKQ 183 (217)
Q Consensus 178 ~aLKkQ 183 (217)
+++|..
T Consensus 79 d~~k~k 84 (90)
T 2wt7_B 79 DAYKVK 84 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 55
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.15 E-value=31 Score=31.04 Aligned_cols=39 Identities=26% Similarity=0.123 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFL 188 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~ 188 (217)
.++++++.++++++++.+++++..+.+.+.++.|.-..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777666666666666666666644433
No 56
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=60.00 E-value=35 Score=28.34 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
.++++..|...|++.+.|..+..+..+..+.|+..+..-||+++=|
T Consensus 176 lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 176 VKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 4455556666666666666666666677777777777778877654
No 57
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.80 E-value=33 Score=22.47 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=10.6
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
..|+.+++.|..|...|
T Consensus 40 ~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 40 EALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665554
No 58
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=59.26 E-value=60 Score=25.15 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=22.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 179 ALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.-+.|..+|.+.|-.++.+|+.+|..-
T Consensus 123 ir~~q~~~L~~kf~~~m~~yq~~q~~y 149 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDYNTTQIDY 149 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999887653
No 59
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=58.21 E-value=34 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=13.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027898 146 GDDIATLKTKIKKLESECEMKDKEAN 171 (217)
Q Consensus 146 ~~~~~~l~~e~~~Lk~el~~~~kel~ 171 (217)
.+.+-.++.++.+|+++.+..++.++
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666555555443
No 60
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=58.14 E-value=33 Score=30.01 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 167 DKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 167 ~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+..+...+..+..|+.+.+.++...++|......+++..
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444447777777777777777766666665544
No 61
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=57.93 E-value=65 Score=25.12 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLL 189 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~ 189 (217)
+++.|...++..+....-|++.+.-|.+..+.+..
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333333333444444444333
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.86 E-value=1e+02 Score=27.37 Aligned_cols=8 Identities=0% Similarity=0.198 Sum_probs=2.8
Q ss_pred HHHhHhhH
Q 027898 180 LKKQSEGF 187 (217)
Q Consensus 180 LKkQae~l 187 (217)
.+.+.+.+
T Consensus 440 ~~~~~~~~ 447 (487)
T 3oja_A 440 YQHKETQL 447 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33333333
No 63
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=57.51 E-value=63 Score=24.80 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=11.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 177 AEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 177 ~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
++-|+|.----++|.-+|..|..-+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~ 72 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTA 72 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=57.12 E-value=54 Score=23.93 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+.+.=+++-||..++..+..+...+++..--.+..+.+-...+.|..+...++.++..
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355578889999998888886666666666666777777777777777777777664
No 65
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.63 E-value=36 Score=21.71 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.++.|...|+.|++.-.-.|.+-+.+...||.=...+
T Consensus 13 e~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 13 EALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 44555666666666665555655566556665544433
No 66
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.09 E-value=38 Score=22.09 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=6.5
Q ss_pred HHHHHhHhhHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDR 193 (217)
Q Consensus 178 ~aLKkQae~l~~EYdr 193 (217)
..|++++..|..|+..
T Consensus 40 ~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 40 SALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 67
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=54.75 E-value=38 Score=23.78 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+|+++|..+++.++.++
T Consensus 38 ~EN~~Lh~~ie~~~eEi 54 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEI 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555555
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.58 E-value=55 Score=23.27 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 027898 158 KLESECEMKDKEA 170 (217)
Q Consensus 158 ~Lk~el~~~~kel 170 (217)
.|+..+...+.++
T Consensus 48 sL~kKiq~lE~el 60 (101)
T 3u59_A 48 GLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=54.30 E-value=52 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+...|..|......-.++|......|..++.
T Consensus 48 ~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 48 LEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444455666655555556666666655555544
No 70
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=54.12 E-value=24 Score=27.30 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhH--------HHHHHHHHHHHH
Q 027898 162 ECEMKDKEANAAKAEAEALKKQSEGF--------LLEYDRLLADNQ 199 (217)
Q Consensus 162 el~~~~kel~~~~~d~~aLKkQae~l--------~~EYdrL~~e~~ 199 (217)
+++...++|..+.++++.|+.-.... ++|-+..++|-+
T Consensus 55 ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQq 100 (141)
T 3okq_A 55 KLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQ 100 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 34444445544444445444433332 556667777654
No 71
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.92 E-value=75 Score=29.31 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=10.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
++|+.++..+..+-..+.++...++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333
No 72
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=53.51 E-value=77 Score=24.65 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhc
Q 027898 100 LSLMMDRLHHYIRE--LRLLRKAMEAAKKQTRSFED 133 (217)
Q Consensus 100 L~lvI~r~~~li~~--l~~l~~~~~a~~kQa~~~~~ 133 (217)
|.+++-+++.++.+ +-.++..+..+..+.++...
T Consensus 6 LTlLlG~l~~l~G~~Sl~qL~nrla~~~am~~sqqq 41 (158)
T 3tul_A 6 LTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE 41 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777764 45566666666655555443
No 73
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.27 E-value=67 Score=23.85 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLL 189 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~ 189 (217)
++.+++.++......+.+.+....-|..+...+..
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~ 48 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQ 48 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443443333444333333333
No 74
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=53.26 E-value=48 Score=22.16 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
.++++|+.....-..++..++.++.-|+.+...|+.|-+.+
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666666666677777777777666554
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=53.03 E-value=69 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSE 185 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae 185 (217)
+++|+.||+.....|..+.++++-|+++.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444444444333333333333354444433
No 76
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.74 E-value=35 Score=20.88 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFL 188 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~ 188 (217)
-+++++...||+..++.| .-++++.+.|.
T Consensus 8 ~qkI~kVdrEI~Kte~kI-------~~lqkKlkeLe 36 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQI-------SKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 344444444444443333 66666665554
No 77
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.65 E-value=68 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=12.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
..+|...+....||..|++=.-.|
T Consensus 92 ~~~r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 92 QKAKQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443333
No 78
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=52.64 E-value=29 Score=27.62 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=20.0
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.-+-+|....+++||++-++|.++...++
T Consensus 20 ~e~h~qy~~ks~~yd~l~e~y~r~sqEiq 48 (170)
T 3l4q_C 20 KVYHQQYQDKSREYDQLYEEYTRTSQELQ 48 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44556677778888888888877654443
No 79
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.53 E-value=55 Score=22.67 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAA------KAEAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~------~~d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
+.+.+..++++|+.++...+..+... -..+..+-.+.+.++.+.+.+.++-..|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666655555322 1223445555555555555555554444
No 80
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.50 E-value=35 Score=30.68 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=3.6
Q ss_pred HHHHhHhhHH
Q 027898 179 ALKKQSEGFL 188 (217)
Q Consensus 179 aLKkQae~l~ 188 (217)
.|+.++..+.
T Consensus 68 ~l~~~~~~~~ 77 (421)
T 1ses_A 68 ALIARGKALG 77 (421)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 81
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=52.24 E-value=86 Score=24.81 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH----HHHHHHHHHhhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLL----ADNQHLRNQLES 207 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~----~e~~~l~~~~~~ 207 (217)
.++.+.+.-|..+++.....+.++..|...|......+.+|+..+. =+...+|..++.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4466678888888888888888888888899999999999888875 334556665554
No 82
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=52.20 E-value=63 Score=23.21 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=41.1
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 151 TLKTKIK-KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 151 ~l~~e~~-~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++..++ +|........+++. |+..| .|-+-|.++|-.+..+++.++.+-+
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~----~l~~l-~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIE----SNILI-HQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH----HSTHH-HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hhccc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888 88888888888774 55566 4899999999999999999987655
No 83
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=51.17 E-value=59 Score=22.80 Aligned_cols=35 Identities=31% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
.|..+=.+-+.|.++.+.++.|-..+..+++.|++
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455555555555555555555555543
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.76 E-value=1.3e+02 Score=26.59 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=7.4
Q ss_pred HHHHHHHHHhHhhHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EY 191 (217)
..+.+.++++-+.+.++-
T Consensus 441 ~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 441 QHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhh
Confidence 333344444444443333
No 85
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.48 E-value=17 Score=30.74 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 027898 186 GFLLEYDRLLADNQHL 201 (217)
Q Consensus 186 ~l~~EYdrL~~e~~~l 201 (217)
.+.+|..+|.+|.++|
T Consensus 79 ~ar~El~~LkeElerL 94 (251)
T 3m9b_A 79 EARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333343343333
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.39 E-value=75 Score=23.60 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=13.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 176 EAEALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
++..+|...+....||..|++=.-.|
T Consensus 92 eL~~~r~em~~ql~EYq~Ll~vKl~L 117 (131)
T 3tnu_A 92 QLAQLRCEMEQQNQEYKILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555556665555544333
No 87
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=50.09 E-value=58 Score=22.18 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
|.+.++..|...+.++ ..+|...+....||..|++=.-.|.-
T Consensus 6 e~~~~~~~i~~lE~eL-------~~~r~e~~~ql~EYq~LlniKl~Le~ 47 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREM-------AEMRARMQQQLDEYQELLDIKLALDM 47 (74)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 55666666667777777665544443
No 88
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.03 E-value=25 Score=31.71 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
.++++|+.+++-. +.+.+-++.|...+++||.++.+|...+|.
T Consensus 49 ~~lk~le~~~~~L-------~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELL-------TLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444555444433 333367888888888899888887766654
No 89
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.50 E-value=35 Score=28.05 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=17.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+.|++|++.+...|-|+..|+++.+...+
T Consensus 69 ~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 69 AELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666655544
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.64 E-value=49 Score=20.99 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.+.+++|..-++....+| ..|+.|.+.+
T Consensus 21 L~~rN~rL~~~L~~AR~el-------~~Lkeele~L 49 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQL-------LALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 4444445554444444444 7777776654
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.66 E-value=56 Score=21.01 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=5.4
Q ss_pred HHHHHhHhhHHHHH
Q 027898 178 EALKKQSEGFLLEY 191 (217)
Q Consensus 178 ~aLKkQae~l~~EY 191 (217)
..|++++..|..|.
T Consensus 39 ~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 39 GQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344433333333
No 92
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=46.10 E-value=1.1e+02 Score=24.34 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Q 027898 100 LSLMMDRLHHYIRE--LRLLRKAMEAAKKQ 127 (217)
Q Consensus 100 L~lvI~r~~~li~~--l~~l~~~~~a~~kQ 127 (217)
|.++|.+++.++.+ +.+++..++..+-|
T Consensus 54 LTLLLGnL~~IlG~~SlTqL~nrL~~wlsQ 83 (201)
T 3u0c_A 54 LTLLIGNLIQILGEKSLTALTNKITAWKSQ 83 (201)
T ss_dssp HHHHHHHHHHHHCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 56778888888764 34455566655544
No 93
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=46.05 E-value=1.9e+02 Score=26.88 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIREL 114 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l 114 (217)
.+.||..++. .|+.++.+|+.-
T Consensus 398 ilegl~~a~~-~id~vI~iIr~s 419 (514)
T 2inr_A 398 IVEGLIKALS-ILDKVIELIRSS 419 (514)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHHcC
Confidence 7899888775 678888887643
No 94
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=46.02 E-value=27 Score=22.01 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.2
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q 027898 176 EAEALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~ 195 (217)
++.+|..=.+.|+.||++++
T Consensus 28 EV~~L~~NL~EL~~E~~~~~ 47 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQQS 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 45788888888888888764
No 95
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.81 E-value=35 Score=24.78 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=10.8
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 180 LKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 180 LKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+++..+.|..|=++|.++.+.|.-++.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443333
No 96
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.70 E-value=72 Score=29.35 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=7.8
Q ss_pred HHHHhHhhHHHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~ 198 (217)
.|+.++..+..+-..+.++.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333
No 97
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=45.06 E-value=10 Score=22.54 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=18.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+++|+...+++.+=|.+.++-..+++++
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666554
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.81 E-value=62 Score=21.02 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=16.9
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+.|.++-..|..+.+.|.++...|...+
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655544
No 99
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=44.72 E-value=54 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027898 165 MKDKEANAAKA 175 (217)
Q Consensus 165 ~~~kel~~~~~ 175 (217)
+..+|+.+++.
T Consensus 19 E~RkElqK~K~ 29 (45)
T 1use_A 19 EVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 100
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=44.05 E-value=98 Score=23.09 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..+++.+|..+-..+... .+...-|. +|+.|..+|..+.++|+
T Consensus 45 ~~~~l~~~i~er~~~i~~~-~~~~~yk~-------~y~~l~k~Y~~~~keLd 88 (119)
T 3etw_A 45 QNEQVYNELSQRAQRLQAE-ANTRFYKS-------QYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSCTTHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hccchHHH-------HHHHHHHHHHHHHHHHH
Confidence 3456666666666666332 23333344 45555555555544444
No 101
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.93 E-value=75 Score=28.79 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=8.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~ 200 (217)
.|+.++..+..+-..+.++...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~ 94 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEE 94 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333333
No 102
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.89 E-value=64 Score=21.91 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
..|+.+.+.+..+.++|..++..|+.++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666667777777777776664
No 103
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.35 E-value=82 Score=22.81 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 027898 189 LEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 189 ~EYdrL~~e~~~l~~~~~~~ 208 (217)
.+-+.|..|.++|+..+...
T Consensus 75 ~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666544
No 104
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=43.33 E-value=1.4e+02 Score=24.78 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQS--EGFLLEYDRL 194 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQa--e~l~~EYdrL 194 (217)
++..|+.||...+.+...+++.+..+|-|. |.+.-.++-+
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al 173 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSL 173 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666676666666666666666665543 4455555555
No 105
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=43.31 E-value=85 Score=25.44 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
+.++-.++..|...++-+ ..||+..+.|..|+..+.++...++.++..
T Consensus 16 R~~L~~lK~rL~~a~rG~-------~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~ 63 (217)
T 3aon_A 16 RMELTRLKKQLTTATRGH-------KLLKDKQDELMRQFILLIRKNNELRQAIEK 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555555 889999999999999998888888877663
No 106
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=43.16 E-value=36 Score=23.18 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALK 181 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLK 181 (217)
+..++..+..|.+...+.+++++.+...++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444445544
No 107
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=43.14 E-value=19 Score=21.79 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 91 ASLMGFLLFLSLMMDRL 107 (217)
Q Consensus 91 ~YLtGF~LFL~lvI~r~ 107 (217)
+=+-|-+||.+++|+|+
T Consensus 21 aGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 21 AGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46889999999999997
No 108
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.81 E-value=70 Score=28.50 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 027898 157 KKLESECEMKDKEA 170 (217)
Q Consensus 157 ~~Lk~el~~~~kel 170 (217)
+.++.+++..+++.
T Consensus 6 ~~~~~~~~~l~~~~ 19 (403)
T 4etp_A 6 AALKEKIAALKEKI 19 (403)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 109
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.66 E-value=83 Score=21.85 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHhhH
Q 027898 171 NAAKAEAEALKKQSEGF 187 (217)
Q Consensus 171 ~~~~~d~~aLKkQae~l 187 (217)
..+++|+.+|||-....
T Consensus 45 ~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 34566667777766554
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.84 E-value=67 Score=20.59 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=12.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+.|.++-..|..+...|.+|...|+.
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 111
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=41.38 E-value=66 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=13.3
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
+.|+.+...+.+|-|.+...|+.|
T Consensus 65 ~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 65 EQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555555443
No 112
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.07 E-value=86 Score=21.62 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH---HH---HHHHHHHHHHHHHHHhh
Q 027898 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF---LL---EYDRLLADNQHLRNQLE 206 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l---~~---EYdrL~~e~~~l~~~~~ 206 (217)
..+++.|..+|+..+.++ ..|..+...- +. ....+..+++.++..++
T Consensus 21 qrEle~le~~Ie~LE~~i-------~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKL-------EALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544 7777776431 12 23344555555555554
No 113
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.92 E-value=88 Score=22.90 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=9.4
Q ss_pred HHHHHhHhhHHHH
Q 027898 178 EALKKQSEGFLLE 190 (217)
Q Consensus 178 ~aLKkQae~l~~E 190 (217)
..|+.+++++.+|
T Consensus 28 ~eLk~~ve~lEkE 40 (106)
T 4e61_A 28 EQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777765
No 114
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.74 E-value=90 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=10.5
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
.+..++...-.+....|..|..+++.+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444433
No 115
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=40.70 E-value=1e+02 Score=22.58 Aligned_cols=10 Identities=40% Similarity=0.478 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027898 155 KIKKLESECE 164 (217)
Q Consensus 155 e~~~Lk~el~ 164 (217)
++.+|+.++.
T Consensus 19 ei~~L~~ei~ 28 (106)
T 4e61_A 19 TIGSLNEEIE 28 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 116
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=40.46 E-value=1.1e+02 Score=26.06 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQ-SEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQ-ae~l~~EYdrL~~e~~~l 201 (217)
+.+.+++.+++..+.++...++++..+.++ ...+..-|+.+..+.+..
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~ 274 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARY 274 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777776666666888888 777888888887665543
No 117
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.07 E-value=47 Score=22.37 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
..+.+.+|+.++..++.+| ..|+.|+..++.-+
T Consensus 23 Kde~I~eLE~~L~~kd~eI-------~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEI-------QELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 4456777777777777777 77776665554433
No 118
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=39.83 E-value=1e+02 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
.++-.++..|...++-+ ..||+..+.|..|+..+.++...++.++..
T Consensus 9 ~~L~~lK~rL~~a~rG~-------~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~ 55 (223)
T 3a5c_G 9 MNLLQRRGQLRLAQKGV-------DLLKKKRDALVAEFFGLVREAMEARKALDQ 55 (223)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665555555544 999999999999999999999999888774
No 119
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.78 E-value=1.1e+02 Score=22.50 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027898 187 FLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 187 l~~EYdrL~~e~~~l~~~~ 205 (217)
++.|-++|.++...||.+.
T Consensus 88 l~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.77 E-value=1.1e+02 Score=22.57 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.0
Q ss_pred HHHHHhHhhHH
Q 027898 178 EALKKQSEGFL 188 (217)
Q Consensus 178 ~aLKkQae~l~ 188 (217)
+.|.++-..|.
T Consensus 72 ~~L~~~k~eLe 82 (129)
T 2fxo_A 72 DQLIKNKIQLE 82 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 121
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=39.62 E-value=1e+02 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=20.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
-.-+.|..+|.+-|-.++.+|+..|.
T Consensus 91 Rir~~q~~~L~~kf~e~m~~y~~~q~ 116 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVEVMSEYNATQS 116 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888887664
No 122
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.76 E-value=77 Score=20.39 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=2.9
Q ss_pred HHHhHhhH
Q 027898 180 LKKQSEGF 187 (217)
Q Consensus 180 LKkQae~l 187 (217)
|+.++..|
T Consensus 41 L~~~v~~L 48 (62)
T 1jnm_A 41 LASTANML 48 (62)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.63 E-value=96 Score=21.43 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 167 DKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 167 ~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
...|..-+.++..+|...+....||..|++=.-.|.-.
T Consensus 34 q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~E 71 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333334444777888888888888887766555443
No 124
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.51 E-value=59 Score=22.87 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++.+.++..+|+.++...+.+++ +.|.+..-+.-=.+..+|+.+.|=-+.|-..++
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~--~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLK--NRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566666667777766655442 112222223334455789999887777765555
No 125
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=37.97 E-value=88 Score=21.37 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=13.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..|+.+-..+..|-++|..++..|+.+++
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444455555555554443
No 126
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.96 E-value=88 Score=21.90 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+|+++|..+++.++.++
T Consensus 46 ~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555666665555555
No 127
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.84 E-value=1e+02 Score=21.58 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=7.0
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
+.-+++++.++++-+|.
T Consensus 54 ~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 128
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=37.77 E-value=17 Score=20.70 Aligned_cols=14 Identities=7% Similarity=0.104 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhh
Q 027898 55 VLMSSVYSILKIQQ 68 (217)
Q Consensus 55 lF~Dsi~~~~k~~~ 68 (217)
-|.|+++|++.|-.
T Consensus 9 aFadA~~RaRQIaA 22 (31)
T 2kxh_B 9 AFKDALQRARQIAA 22 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 38999999988754
No 129
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=37.74 E-value=71 Score=22.38 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=12.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l 201 (217)
+.|.++.+.++.|-.+|.+++..|
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444
No 130
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.68 E-value=81 Score=25.76 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAK---AEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~---~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
|+++|..+|+.++.++..-+ .+...|-.++..+..-+++|..+.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444433222 222445555666666666665543
No 131
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=37.35 E-value=47 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=10.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~ 198 (217)
+.|-.|....+.+|-++.++.
T Consensus 14 eel~~klk~~~ee~~~~~eee 34 (71)
T 1uix_A 14 EELNNKLKEAQEQLSRLKDEE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.30 E-value=1.2e+02 Score=22.35 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=8.8
Q ss_pred HHHHhHhhHHHHHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~ 200 (217)
.|..+...+..+-.+.+.||+.
T Consensus 88 ~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443
No 133
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.70 E-value=1.1e+02 Score=21.76 Aligned_cols=54 Identities=28% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKK-------------------QSEGFLLEYDRLLADNQHLRNQLESI 208 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKk-------------------Qae~l~~EYdrL~~e~~~l~~~~~~~ 208 (217)
..++|+..|...+++|.++..+.++|.| |.......-|.|..+..+++..|+..
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665544 33334445567777777777766644
No 134
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.70 E-value=88 Score=22.35 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
++.++.+|..||+...+++
T Consensus 54 L~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444544444444444
No 135
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.24 E-value=1.7e+02 Score=23.57 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898 155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY 191 (217)
.+.+|..|...+..++...+.+.++|++|...+...-
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666666666655666666666655554444
No 136
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=36.23 E-value=1.9e+02 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 027898 153 KTKIKKLE------SECEMKDKEANAAKAEAEALKKQSEGFLL 189 (217)
Q Consensus 153 ~~e~~~Lk------~el~~~~kel~~~~~d~~aLKkQae~l~~ 189 (217)
..++.+|+ ..|...+.||..++++...-..|..|..+
T Consensus 117 ~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 117 TDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 34555555 34566666777776666666666666644
No 137
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=35.92 E-value=45 Score=17.94 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESEC 163 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el 163 (217)
++.++++|+..|+.|+
T Consensus 8 evgelkgevralkdev 23 (27)
T 3v86_A 8 EVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3344555555555544
No 138
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.55 E-value=59 Score=22.27 Aligned_cols=8 Identities=50% Similarity=0.571 Sum_probs=3.8
Q ss_pred HHHHHhHh
Q 027898 178 EALKKQSE 185 (217)
Q Consensus 178 ~aLKkQae 185 (217)
+.|++|.+
T Consensus 71 ~~L~~~L~ 78 (80)
T 1nlw_A 71 RHLKRQLE 78 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44554443
No 139
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.31 E-value=1.9e+02 Score=23.87 Aligned_cols=53 Identities=8% Similarity=0.166 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+.....++|.++..++..+.+.+.+..++.+|.+.-...--.+.+-|.++-=.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 45678899999999999999999999999999999888777787778776433
No 140
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=34.95 E-value=62 Score=26.04 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHh
Q 027898 152 LKTKIKKLESECEMKDK----EANAAKAEAEALKKQSE 185 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~k----el~~~~~d~~aLKkQae 185 (217)
+.+++++|+.+++..+. .+.++.+|++.+|+..+
T Consensus 40 ~~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ 77 (197)
T 1dkg_A 40 RDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTE 77 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666655442 55566666666666544
No 141
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.61 E-value=1e+02 Score=27.48 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027898 111 IRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 111 i~~l~~l~~~~~a~~kQ 127 (217)
..++..+++.-+++.|+
T Consensus 43 ~~~~~~l~~~~n~~sk~ 59 (425)
T 2dq3_A 43 IKRLEALRSERNKLSKE 59 (425)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 142
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.60 E-value=1.3e+02 Score=21.77 Aligned_cols=55 Identities=29% Similarity=0.339 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
+..+-=+|+..++..+++-..-+.-....-.++..|+.|-+||..|++.|..+-+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444433222222233345888899999999999998876544
No 143
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=34.58 E-value=1.1e+02 Score=25.06 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 165 MKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 165 ~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
..++.|..+=.+-+.|.++.+.++.|-.+|.+|+..|+.
T Consensus 105 ~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 105 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556677788888888888777777776654
No 144
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.45 E-value=69 Score=20.65 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=7.7
Q ss_pred HHHhHhhHHHHHHHHHHHHH
Q 027898 180 LKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 180 LKkQae~l~~EYdrL~~e~~ 199 (217)
|..+-..|..+.+.|.+|..
T Consensus 34 L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 145
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.34 E-value=57 Score=22.17 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.0
Q ss_pred HHHHHhH
Q 027898 178 EALKKQS 184 (217)
Q Consensus 178 ~aLKkQa 184 (217)
..|+.|.
T Consensus 71 ~~L~~~l 77 (83)
T 1nkp_B 71 ALLEQQV 77 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 146
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=33.66 E-value=1.6e+02 Score=22.62 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 180 LKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 180 LKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
-+.|..+|.+.|-.++.+|+++|.
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~ 105 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDS 105 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666665543
No 147
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.17 E-value=86 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.+.+|+.|++...+++..+-++.+.+-++.+++
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888877777777777776665
No 148
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.10 E-value=1.3e+02 Score=26.85 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027898 104 MDRLHHYIRELRLLRKAMEAAKKQ 127 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~kQ 127 (217)
+..+..+=.+...++...+.++.+
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~ 52 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSE 52 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555545555555555555433
No 149
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=33.01 E-value=1.9e+02 Score=26.50 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=6.9
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
..++.+.+.+..+-..+
T Consensus 114 ~~l~~~i~~le~~~~~~ 130 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQL 130 (484)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 150
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=32.79 E-value=1.5e+02 Score=22.04 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ 199 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~ 199 (217)
..++..+|+.+-..|.. .++..--|.|..+|-+.|+.+..+.+
T Consensus 46 ~~~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 46 NEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666622 23334455566666666655544443
No 151
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.74 E-value=1.3e+02 Score=21.11 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=4.2
Q ss_pred HHHHHhHhhH
Q 027898 178 EALKKQSEGF 187 (217)
Q Consensus 178 ~aLKkQae~l 187 (217)
+..++.+..+
T Consensus 68 ~rhk~~i~~l 77 (84)
T 1gmj_A 68 ERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 152
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.73 E-value=1.4e+02 Score=21.74 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-------H
Q 027898 116 LLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF-------L 188 (217)
Q Consensus 116 ~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l-------~ 188 (217)
.++..++.+++|...+.. +.....-++......++.++...+.--..-..+++|+.+|||..+.. +
T Consensus 17 ~ye~~I~~LR~qid~~~~-------e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTN-------DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 356677788888666643 11222233344445555555554433334455688888999887754 3
Q ss_pred HHHHHHHHHHHHH
Q 027898 189 LEYDRLLADNQHL 201 (217)
Q Consensus 189 ~EYdrL~~e~~~l 201 (217)
...+.|.+|..=+
T Consensus 90 ~~iesL~eEl~FL 102 (119)
T 3ol1_A 90 RKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555554433
No 153
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=32.48 E-value=92 Score=24.73 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhHHHHH-HHHHHHHHHHHHHhh
Q 027898 152 LKTKIKKLESECEMKDKEANAA-KAEAEALKKQSEGFLLEY-DRLLADNQHLRNQLE 206 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~-~~d~~aLKkQae~l~~EY-drL~~e~~~l~~~~~ 206 (217)
+.+++++|+..|+-...+++.. ..+++.++.+..-...+| .++...-+.++.++.
T Consensus 104 l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 104 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 3445666666666666665443 446677777777777777 455555567777766
No 154
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.40 E-value=86 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+.+.+|+.|++...+++..+-++.+.+-++++++
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888877766667777766665
No 155
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.20 E-value=1.3e+02 Score=21.06 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=10.4
Q ss_pred HHHHHhHhhHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~ 195 (217)
..|+.|++.|.+|.+.|-
T Consensus 53 ~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 53 ERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666655555553
No 156
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=32.03 E-value=1e+02 Score=19.77 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=14.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
..+|...+....||..|++=.-.|.
T Consensus 17 ~~~r~e~~~q~~eYq~LlniK~~Le 41 (59)
T 1gk6_A 17 YHLENEVARLKKLVGDLLNVKMALD 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555666667776666554443
No 157
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.80 E-value=93 Score=19.28 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=11.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHh
Q 027898 184 SEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 184 ae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.+.++.-|-||+.||+..|.++
T Consensus 14 ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 14 LDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566665554444
No 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=31.70 E-value=19 Score=27.66 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLL 195 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~ 195 (217)
++.++++|+..++..+..-. -.-||+.|++...+-||+-.
T Consensus 18 lk~sVKKLE~RLkKYepgSp----PALALqqqIeKTK~RFdkYg 57 (154)
T 1qzv_F 18 EKQALKKLQASLKLYADDSA----PALAIKATMEXXXXXXXXXX 57 (154)
T ss_pred HHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHHhccccccc
Confidence 44556666666554444332 23789999999999887653
No 159
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.55 E-value=66 Score=17.42 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
++++...|++|+...+-++
T Consensus 5 lkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4555666666665555544
No 160
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.47 E-value=74 Score=26.80 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.1
Q ss_pred HHHHHhHh
Q 027898 178 EALKKQSE 185 (217)
Q Consensus 178 ~aLKkQae 185 (217)
..||.|.+
T Consensus 85 ~~LkeEle 92 (251)
T 3m9b_A 85 LALREEVD 92 (251)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 161
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=31.13 E-value=1.2e+02 Score=20.97 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+++++|-.+|+.++.+|
T Consensus 34 ~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46667777777777766
No 162
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.74 E-value=1.2e+02 Score=21.10 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=8.8
Q ss_pred HHHHHhHhhHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRL 194 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL 194 (217)
+.|+++-..+-.+-|+.
T Consensus 51 ~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 51 NQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555554444433
No 163
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=30.60 E-value=2e+02 Score=22.68 Aligned_cols=12 Identities=17% Similarity=0.147 Sum_probs=4.7
Q ss_pred hHhhHHHHHHHH
Q 027898 183 QSEGFLLEYDRL 194 (217)
Q Consensus 183 Qae~l~~EYdrL 194 (217)
+..+|..|-+|+
T Consensus 98 ri~~L~~El~~~ 109 (168)
T 3o0z_A 98 RITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333343343333
No 164
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.16 E-value=1.4e+02 Score=20.77 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=2.6
Q ss_pred HHHHHhH
Q 027898 178 EALKKQS 184 (217)
Q Consensus 178 ~aLKkQa 184 (217)
+.|+++.
T Consensus 62 ~~l~~~~ 68 (81)
T 1wt6_A 62 RQLQERM 68 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 165
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=30.12 E-value=59 Score=27.99 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 027898 150 ATLKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel 170 (217)
+.+.++++.|++|++.++++.
T Consensus 188 e~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 166
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=30.08 E-value=1.6e+02 Score=21.33 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhhHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANA-------AKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~-------~~~d~~aLKkQae~l~~EYdrL 194 (217)
++.++.+|+.+..++.. .+.+-..+.++..++.+|.|.|
T Consensus 56 le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444422 2223333444445555555444
No 167
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.78 E-value=1.3e+02 Score=20.21 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=12.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
..|....+.++.|...|-++...|+..+
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555544444554443
No 168
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.76 E-value=1.7e+02 Score=21.54 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH-------HHHHHHHHHHHHhhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD-------RLLADNQHLRNQLES 207 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd-------rL~~e~~~l~~~~~~ 207 (217)
.++++|+.++..++++++. +.-|+.|++=....|. ++..|.+.|+.++..
T Consensus 45 ~~idelk~ei~q~~~~lE~----I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 45 ELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 4566666666666665533 3778888877776663 566667777776653
No 169
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.64 E-value=1.4e+02 Score=20.61 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~ 196 (217)
.|.++.+.+..|+..++....+=...+.++..+-.+..+=--|-..|-+
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRq 69 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445666666666666666655555555555555555554444333333
No 170
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=29.09 E-value=79 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+++.+++.+|++++.++
T Consensus 162 ~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 162 AAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443433
No 171
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.06 E-value=1.9e+02 Score=25.02 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
+.+|+..+...+.++..-+..++.++++...|+.....|
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444433333
No 172
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=28.97 E-value=90 Score=20.58 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027898 187 FLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 187 l~~EYdrL~~e~~~l~~~ 204 (217)
.+.|-|+|.-+|.++...
T Consensus 34 ~SQeLD~LIn~Y~k~~~~ 51 (64)
T 2c0s_A 34 FSQELDRLLNLLIELKTK 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456778888888776653
No 173
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.85 E-value=32 Score=28.74 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027898 190 EYDRLLADNQHLRNQLES 207 (217)
Q Consensus 190 EYdrL~~e~~~l~~~~~~ 207 (217)
+++.+..|+++|++.+..
T Consensus 44 ~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 44 EVADLKKENKDLKESLDI 61 (255)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344566677777776654
No 174
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.83 E-value=3.6e+02 Score=25.07 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
++..+.++++.+.||..+++++...+....-..+-|+.+..+.+....++
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~ 365 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTL 365 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHH
Confidence 45566667777777777777777777765666677877665554444443
No 175
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.75 E-value=1.4e+02 Score=20.30 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
.++..|+..+.-+.+ |.+.|--..-+++-|-+=|.+..++++.
T Consensus 32 ~eI~~L~e~i~lk~k-------d~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 32 QEIRRLKEVIALKNK-------NTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcc-------cHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 344444444444444 4466666666666776667666666553
No 176
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.33 E-value=1.2e+02 Score=19.29 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
+..++..|..++..+..++
T Consensus 9 Lss~V~~L~~kVdqLssdV 27 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDA 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444
No 177
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.11 E-value=1.7e+02 Score=20.99 Aligned_cols=13 Identities=38% Similarity=0.350 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 027898 158 KLESECEMKDKEA 170 (217)
Q Consensus 158 ~Lk~el~~~~kel 170 (217)
+|+.||+..++++
T Consensus 51 eL~~EI~~L~~eI 63 (96)
T 1t3j_A 51 HLEEEIARLSKEI 63 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444554444444
No 178
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.81 E-value=1.4e+02 Score=20.46 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=8.3
Q ss_pred HHHHHhHhhHHHHHH
Q 027898 178 EALKKQSEGFLLEYD 192 (217)
Q Consensus 178 ~aLKkQae~l~~EYd 192 (217)
+.|+.....|..||.
T Consensus 17 d~LQTrfARLLaEy~ 31 (74)
T 3swf_A 17 DLLQTRFARILAEYE 31 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 179
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.80 E-value=1.5e+02 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=8.2
Q ss_pred HHHHhHhhHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~ 196 (217)
..|-..+-=-..|.+|++
T Consensus 63 nvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 63 DIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHc
Confidence 334444443445555544
No 180
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.36 E-value=1.6e+02 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 104 MDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~ 125 (217)
|.+|-.+=-+...++.+.+.+.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555443
No 181
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.36 E-value=1.5e+02 Score=20.40 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=16.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..|+.+...+..+-+.|..+++.|+.+++
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666666555
No 182
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.31 E-value=2e+02 Score=21.57 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES 207 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~ 207 (217)
-++..++..++.+ +.+.++.+.+...++.+.+.-++++.+.+.
T Consensus 102 ~l~~ri~~l~~~l-------~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 102 FLEKRLKEYDEAI-------KKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 666666666666677776777777765554
No 183
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.28 E-value=1.8e+02 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=10.0
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHH
Q 027898 179 ALKKQSEGFLLEYDRLLADNQHL 201 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~l 201 (217)
.|..+...+..+-.+.+.||+.|
T Consensus 86 ~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 86 ELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 184
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.03 E-value=1.1e+02 Score=18.72 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHH
Q 027898 174 KAEAEALKKQSEGFLLEYDRLLA 196 (217)
Q Consensus 174 ~~d~~aLKkQae~l~~EYdrL~~ 196 (217)
+.|-+.|.|=..|+..|.-||-.
T Consensus 23 erdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 23 ERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHHHHH
Confidence 33446677777777666666633
No 185
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.95 E-value=2.2e+02 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898 106 RLHHYIRELRLLRKAMEAAKKQTRSF 131 (217)
Q Consensus 106 r~~~li~~l~~l~~~~~a~~kQa~~~ 131 (217)
.++.-|.....+++.+...+++.+++
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~ 32 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQ 32 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45667777777777777777665544
No 186
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.35 E-value=1.9e+02 Score=21.08 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhH-hhHHHHHHHHHHHHHHHHHHhh
Q 027898 150 ATLKTKIKKLESECEMKDKEANAAKAEAE----ALKKQS-EGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~----aLKkQa-e~l~~EYdrL~~e~~~l~~~~~ 206 (217)
.++.+|+...+.+|......|+.|+..++ -+-|++ ..-+.+-+.+.++...++.+++
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444544433322 122221 2223333444444555555554
No 187
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.12 E-value=1.8e+02 Score=20.82 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027898 190 EYDRLLADNQHLRNQLE 206 (217)
Q Consensus 190 EYdrL~~e~~~l~~~~~ 206 (217)
+...+-..+.+|+.|+.
T Consensus 77 e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444455566666665
No 188
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.00 E-value=1.6e+02 Score=20.12 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=6.9
Q ss_pred HHHHHhHhhHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDR 193 (217)
Q Consensus 178 ~aLKkQae~l~~EYdr 193 (217)
..|+.+++.|.+|.+.
T Consensus 53 ~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 53 ERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 189
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=25.92 E-value=2.9e+02 Score=23.07 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhHHHHH
Q 027898 155 KIKKLESECEMKDKEANAA-KAEAEALKKQSEGFLLEY 191 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~-~~d~~aLKkQae~l~~EY 191 (217)
+++.++..++-...++... ..+.+.++.+..-...++
T Consensus 45 ~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el 82 (273)
T 3s84_A 45 NLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRM 82 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444443433222 334445555544444444
No 190
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=25.69 E-value=33 Score=21.05 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=15.6
Q ss_pred HHHHHHHhHhhHHHHHHHHHHH
Q 027898 176 EAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 176 d~~aLKkQae~l~~EYdrL~~e 197 (217)
+.+..+.+++.+..+|...+.+
T Consensus 17 ~A~~~~~ea~~~~~~~e~~l~~ 38 (53)
T 2khk_A 17 SAERAHKDLDLAKASATDQLKK 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3377778888888888766554
No 191
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=25.55 E-value=1.9e+02 Score=24.53 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 027898 191 YDRLLADNQHLR 202 (217)
Q Consensus 191 YdrL~~e~~~l~ 202 (217)
|+.+++||++++
T Consensus 142 Y~~r~ee~ekak 153 (279)
T 3qwe_A 142 YVQRSEDLRARS 153 (279)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 666777776664
No 192
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=25.44 E-value=50 Score=27.26 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=12.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Q 027898 91 ASLMGFLLFLS-LMMDRLHHYIRELR 115 (217)
Q Consensus 91 ~YLtGF~LFL~-lvI~r~~~li~~l~ 115 (217)
.|+.+|+++.+ ++++-..+++.+..
T Consensus 214 ~~f~~~~~i~~~~~lnl~~aii~~~f 239 (285)
T 3rvy_A 214 VFFIPFIFVVTFVMINLVVAICVDAM 239 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555543 33444455555444
No 193
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=25.14 E-value=2e+02 Score=25.80 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=15.4
Q ss_pred HHHHHhHhhHHH------HHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLL------EYDRLLADNQHLRN 203 (217)
Q Consensus 178 ~aLKkQae~l~~------EYdrL~~e~~~l~~ 203 (217)
+.+..|...+.+ |++.|.+++..+++
T Consensus 210 ~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 210 DLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 555566555555 66666666665544
No 194
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.80 E-value=2.1e+02 Score=23.99 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 027898 113 ELRLLRKAMEAAKKQ 127 (217)
Q Consensus 113 ~l~~l~~~~~a~~kQ 127 (217)
++...++.++.+..+
T Consensus 71 ~l~~~~a~l~~~~a~ 85 (369)
T 4dk0_A 71 TLNTRKAALASYQAQ 85 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444544444433
No 195
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.30 E-value=1.7e+02 Score=19.83 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKK 182 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKk 182 (217)
..+..++.|+...+-.+..++.++.||+.
T Consensus 15 T~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 15 TDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhheeeccccchhhhhhhhhHHHHh
Confidence 34445555555555566666666677764
No 196
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.26 E-value=2.1e+02 Score=20.78 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=14.6
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLRN 203 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~~ 203 (217)
+.+.++.+.+...++.+.+.-++++.
T Consensus 105 ~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 105 QKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555543
No 197
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=23.86 E-value=1.5e+02 Score=19.36 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 187 FLLEYDRLLADNQHLRN 203 (217)
Q Consensus 187 l~~EYdrL~~e~~~l~~ 203 (217)
.+.|-|+|.-+|.++..
T Consensus 34 ~SQeLD~LIn~Y~k~~~ 50 (62)
T 2bzb_A 34 FSRDLDKLINKFMNVKD 50 (62)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34566677666665543
No 198
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.62 E-value=2.5e+02 Score=21.58 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898 162 ECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL 194 (217)
Q Consensus 162 el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL 194 (217)
.++..+..+...+++...++...+.++.+...|
T Consensus 74 dleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 74 EQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333444455555544454444444
No 199
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.51 E-value=2.4e+02 Score=21.27 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 027898 113 ELRLLRKAMEAA 124 (217)
Q Consensus 113 ~l~~l~~~~~a~ 124 (217)
+...++...+.+
T Consensus 30 eN~~Lk~e~e~l 41 (155)
T 2oto_A 30 ENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 200
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.48 E-value=4.6e+02 Score=24.49 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 027898 158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDR 193 (217)
Q Consensus 158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdr 193 (217)
+|+..+.-.+.++...-+.+.+|+..++++-.+.-|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555533333344444444444333333
No 201
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.40 E-value=1.8e+02 Score=19.77 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~ 206 (217)
..+.+|+..+.=.+..| +.|-...-..+++-|+|......|.+++.
T Consensus 14 ~Ri~~LE~klAfqE~tI-------eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 14 ARLVELETRLSFQEQAL-------TELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544444333333 55555555566666666666655555554
No 202
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.93 E-value=1.8e+02 Score=19.75 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=19.9
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 177 AEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 177 ~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
+..+|...+....||..|++=.-.|.-.
T Consensus 42 L~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 42 IQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3777777788888888887766555443
No 203
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.58 E-value=2.1e+02 Score=20.32 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD 197 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e 197 (217)
.+=.+|...+.+...++ +.++++...-..-||.....
T Consensus 49 AKWaKL~Rk~DKl~~el-------e~l~~~l~~~k~~F~~~~~~ 85 (93)
T 3sjb_C 49 AKWTKNNRKLDSLDKEI-------NNLKDEIQSENKAFQAHLHK 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666 77777777777777766544
No 204
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.37 E-value=96 Score=19.75 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027898 190 EYDRLLADNQHLRNQLE 206 (217)
Q Consensus 190 EYdrL~~e~~~l~~~~~ 206 (217)
+|.++.+|+..|+++++
T Consensus 35 ~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 205
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.29 E-value=4.8e+02 Score=24.31 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 186 GFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 186 ~l~~EYdrL~~e~~~l~~~ 204 (217)
|++.+-+.|..|.+.|+.+
T Consensus 564 g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 564 GFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555554
No 206
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.92 E-value=3.1e+02 Score=21.94 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898 110 YIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF 187 (217)
Q Consensus 110 li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l 187 (217)
+-.++...+++++.++.+.+.+. ..-+..+.+-+.......++++.+.+++..+.++..++++++..+.+.+..
T Consensus 58 ~~~~l~~a~a~l~~a~a~l~~a~----~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAANIAQ----LTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYT 131 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 207
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.49 E-value=2.1e+02 Score=19.96 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898 157 KKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD 192 (217)
Q Consensus 157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd 192 (217)
...+.+++....++...+.....+..+.+.+..+|.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444442222222444444444444444
No 208
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.94 E-value=2.4e+02 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 027898 110 YIRELRLLRKAMEA 123 (217)
Q Consensus 110 li~~l~~l~~~~~a 123 (217)
++++.+.....+..
T Consensus 6 LLRK~aE~~KqL~~ 19 (107)
T 2no2_A 6 LLRKNAEVTKQVSM 19 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 44555544444444
No 209
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=20.68 E-value=5.7e+02 Score=24.56 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIREL 114 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l 114 (217)
.+.|+..++. .|+.++.+|+.-
T Consensus 581 ilegl~~a~~-~iD~vI~iIr~s 602 (692)
T 2xcs_B 581 ILEGLRIALD-HIDEIISTIRES 602 (692)
T ss_dssp HHHHHHHHHH-THHHHHHHHHTC
T ss_pred HHhhHHHHHH-hHHHHHHHHHhC
Confidence 8889876665 678888888653
No 210
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.54 E-value=3.3e+02 Score=22.72 Aligned_cols=10 Identities=0% Similarity=0.139 Sum_probs=4.0
Q ss_pred HHHHHhHhhH
Q 027898 178 EALKKQSEGF 187 (217)
Q Consensus 178 ~aLKkQae~l 187 (217)
++++.|.+..
T Consensus 132 ~~~~~~l~~~ 141 (369)
T 4dk0_A 132 DVVQENIKQA 141 (369)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 211
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=20.42 E-value=3e+02 Score=21.25 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhHHHHH-HHHHHHHHHHHHHhh
Q 027898 154 TKIKKLESECEMKDKEAN-AAKAEAEALKKQSEGFLLEY-DRLLADNQHLRNQLE 206 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~-~~~~d~~aLKkQae~l~~EY-drL~~e~~~l~~~~~ 206 (217)
..++.++..++-.-.+++ +++.++++|+.|..-...+. +++.+.-+.++.++.
T Consensus 111 ~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~ 165 (185)
T 3r2p_A 111 EEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLA 165 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555445543 33556677777655554443 234333345555544
No 212
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.30 E-value=1.7e+02 Score=18.22 Aligned_cols=10 Identities=20% Similarity=0.322 Sum_probs=4.2
Q ss_pred HHHHHhHhhH
Q 027898 178 EALKKQSEGF 187 (217)
Q Consensus 178 ~aLKkQae~l 187 (217)
..|.|-..|+
T Consensus 41 anlekdianl 50 (56)
T 3he4_A 41 ANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
Done!