Query 027898
Match_columns 217
No_of_seqs 122 out of 333
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 04:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 76.4 5.8 0.00042 27.0 7.6 21 105-125 28-48 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 65.8 5.5 0.0004 27.1 5.4 37 157-200 68-104 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 62.6 19 0.0014 24.2 9.8 16 111-126 41-56 (110)
4 d1k4ta1 a.2.8.1 (A:641-712) Eu 56.6 21 0.0015 22.8 6.7 27 152-178 7-33 (72)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 55.2 22 0.0016 22.7 9.2 17 154-170 16-32 (72)
6 d1ez3a_ a.47.2.1 (A:) Syntaxin 53.0 29 0.0021 23.4 14.3 49 156-204 61-115 (124)
7 d1ab4a_ e.11.1.1 (A:) DNA Gyra 40.9 98 0.0072 26.0 11.1 25 92-117 350-374 (493)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 37.3 32 0.0023 24.1 5.6 36 154-189 91-126 (129)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 37.1 38 0.0028 20.5 5.4 10 155-164 12-21 (66)
10 d1lghb_ f.3.1.1 (B:) Light-har 36.3 11 0.00077 21.9 2.2 16 89-104 15-30 (43)
11 d1ivsa1 a.2.7.3 (A:797-862) Va 32.9 27 0.002 21.2 4.1 18 153-170 3-20 (66)
12 d1fxkc_ a.2.5.1 (C:) Prefoldin 31.9 68 0.0049 21.6 6.7 22 104-125 24-45 (133)
13 d1nlwa_ a.38.1.1 (A:) Mad prot 30.5 57 0.0041 20.2 5.9 27 179-205 51-77 (79)
14 d1gs9a_ a.24.1.1 (A:) Apolipop 30.5 78 0.0057 21.7 7.1 54 155-208 86-141 (144)
15 d1fxka_ a.2.5.1 (A:) Prefoldin 28.8 62 0.0045 21.3 5.8 19 152-170 70-88 (107)
16 d1vf7a_ f.46.1.1 (A:) Multidru 28.3 72 0.0053 22.9 6.7 50 152-205 51-100 (237)
17 d2efla1 a.238.1.4 (A:1-288) Fo 28.2 1E+02 0.0076 22.5 13.7 25 178-202 128-152 (288)
18 d1nkpa_ a.38.1.1 (A:) Myc prot 25.7 75 0.0055 20.0 5.9 11 156-166 54-64 (88)
19 d1bjta_ e.11.1.1 (A:) DNA topo 23.8 51 0.0037 29.7 5.8 17 154-170 709-725 (760)
20 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 22.5 1.1E+02 0.0083 21.0 12.6 51 148-198 50-107 (196)
21 d2p90a1 c.56.8.1 (A:6-274) Hyp 21.9 64 0.0046 24.6 5.4 21 178-198 248-268 (269)
22 d1jo5a_ f.3.1.1 (A:) Light-har 21.2 24 0.0017 20.8 1.9 17 88-104 19-35 (48)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=76.38 E-value=5.8 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027898 105 DRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 105 ~r~~~li~~l~~l~~~~~a~~ 125 (217)
..+..+-.+.-.+...++.++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~ 48 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQ 48 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=65.82 E-value=5.5 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898 157 KKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH 200 (217)
Q Consensus 157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~ 200 (217)
..|++.++..+.++ +.|.+|.+.+.++|+.+.+++.+
T Consensus 68 ~~l~~~~e~l~~~i-------~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 68 EELQEKLETLQLRE-------KTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555 88888888888888887766553
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=62.59 E-value=19 Score=24.16 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 111 IRELRLLRKAMEAAKK 126 (217)
Q Consensus 111 i~~l~~l~~~~~a~~k 126 (217)
+.++-.+++.-+.+.+
T Consensus 41 ~~~~e~l~~~rN~~sk 56 (110)
T d1seta1 41 KKRLQEVQTERNQVAK 56 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 4
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.61 E-value=21 Score=22.81 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAE 178 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~ 178 (217)
|.++|+.=+.+|....++++.+++|..
T Consensus 7 Lq~KI~~Kk~qi~~a~~e~K~ak~d~k 33 (72)
T d1k4ta1 7 LQTKIDAKKEQLADARRDLKSAKADAK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.23 E-value=22 Score=22.68 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+.+...+.|+.....+.
T Consensus 16 ~qi~~a~~e~K~ak~d~ 32 (72)
T d1k4ta1 16 EQLADARRDLKSAKADA 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 6
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=52.97 E-value=29 Score=23.44 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898 156 IKKLESECEMKDKEANAA------KAEAEALKKQSEGFLLEYDRLLADNQHLRNQ 204 (217)
Q Consensus 156 ~~~Lk~el~~~~kel~~~------~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~ 204 (217)
...++..|+..+++.+.. ..+.-+=+.|..+|.+.|-.++.+|+.+|..
T Consensus 61 a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~ 115 (124)
T d1ez3a_ 61 ANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD 115 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555544332 1223346778888888888888888877654
No 7
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=40.95 E-value=98 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898 92 SLMGFLLFLSLMMDRLHHYIRELRLL 117 (217)
Q Consensus 92 YLtGF~LFL~lvI~r~~~li~~l~~l 117 (217)
.+.|+..|+. .|..++.+++.--.-
T Consensus 350 iL~g~~~~i~-~IdevI~iIr~s~~~ 374 (493)
T d1ab4a_ 350 ILEALAVALA-NIDPIIELIRHAPTP 374 (493)
T ss_dssp HHHHHHHHHH-THHHHHHHHHHCSSH
T ss_pred HHHHHHHHHH-hhhhHhhhhccccCh
Confidence 8899988874 677777777754433
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.28 E-value=32 Score=24.09 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 027898 154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLL 189 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~ 189 (217)
+.+.+|+.|+....+++..+-++.+.|-+|.+++-.
T Consensus 91 ~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~ 126 (129)
T d1ykhb1 91 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888887777777777777776643
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=37.14 E-value=38 Score=20.46 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 027898 155 KIKKLESECE 164 (217)
Q Consensus 155 e~~~Lk~el~ 164 (217)
++++++.++.
T Consensus 12 ~l~kl~~~i~ 21 (66)
T d1ivsa1 12 RLKELLALAE 21 (66)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=36.27 E-value=11 Score=21.88 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027898 89 LEASLMGFLLFLSLMM 104 (217)
Q Consensus 89 ~~~YLtGF~LFL~lvI 104 (217)
...|++||.+|..+.+
T Consensus 15 H~~~~~g~~~F~~iAv 30 (43)
T d1lghb_ 15 HDQFKTTFSAFIILAA 30 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4479999999998654
No 11
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=32.87 E-value=27 Score=21.21 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027898 153 KTKIKKLESECEMKDKEA 170 (217)
Q Consensus 153 ~~e~~~Lk~el~~~~kel 170 (217)
..|+++|.++++..++++
T Consensus 3 ~~E~~RL~K~l~kl~~~i 20 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALA 20 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666665555
No 12
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=31.86 E-value=68 Score=21.60 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027898 104 MDRLHHYIRELRLLRKAMEAAK 125 (217)
Q Consensus 104 I~r~~~li~~l~~l~~~~~a~~ 125 (217)
+.++-..+.++....+.++.+.
T Consensus 24 i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 24 MEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666666666666554
No 13
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.49 E-value=57 Score=20.18 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=12.2
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 179 ALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 179 aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
.|+.+...+..+-+.|..+.+.|+.++
T Consensus 51 ~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444555555555444
No 14
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=30.45 E-value=78 Score=21.73 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhHHHHHH-HHHHHHHHHHHHhhhc
Q 027898 155 KIKKLESECEMKDKEANAA-KAEAEALKKQSEGFLLEYD-RLLADNQHLRNQLESI 208 (217)
Q Consensus 155 e~~~Lk~el~~~~kel~~~-~~d~~aLKkQae~l~~EYd-rL~~e~~~l~~~~~~~ 208 (217)
++++++..+...-.+++.. ..+++.++.+......++. ++....+.++.+|...
T Consensus 86 ~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL~py 141 (144)
T d1gs9a_ 86 DMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVY 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3444444444333333221 2344566666665555553 5555567777777753
No 15
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.84 E-value=62 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027898 152 LKTKIKKLESECEMKDKEA 170 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel 170 (217)
+.+.++-++.+++..++.+
T Consensus 70 l~~~~e~l~~~i~~l~~q~ 88 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQE 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 16
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.26 E-value=72 Score=22.86 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898 152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL 205 (217)
Q Consensus 152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~ 205 (217)
+...++..+.+++..+.++.+. ..|.++-...+.+|+....+++.++.++
T Consensus 51 ~~~~l~~a~a~~~~a~~~~~r~----~~l~~~~~~~~~~~~~~~~~~~~a~~~l 100 (237)
T d1vf7a_ 51 YEADYQSAQANLASTQEQAQRY----KLLVADQAVSKQQYADANAAYLQSKAAV 100 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhhhhhh----hhhhhccccccchhhhhhhhcchhHHHH
Confidence 3344555555555555555443 2333333344455555544444444333
No 17
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.16 E-value=1e+02 Score=22.49 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=9.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADNQHLR 202 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~~~l~ 202 (217)
....++.+...+.|++.+.+.++++
T Consensus 128 ~~~~~~l~k~k~~Y~~~~~e~e~~~ 152 (288)
T d2efla1 128 ETCWKQLESSKRRFERDCKEADRAQ 152 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444443333
No 18
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=75 Score=20.00 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 027898 156 IKKLESECEMK 166 (217)
Q Consensus 156 ~~~Lk~el~~~ 166 (217)
+..|+.++...
T Consensus 54 I~~L~~~~~~l 64 (88)
T d1nkpa_ 54 ILSVQAEEQKL 64 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 19
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.81 E-value=51 Score=29.69 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 154 TKIKKLESECEMKDKEA 170 (217)
Q Consensus 154 ~e~~~Lk~el~~~~kel 170 (217)
+++++|+.|++++.+++
T Consensus 709 eei~kL~~E~~~l~~Ei 725 (760)
T d1bjta_ 709 ERYQKLLKQKQEKETEL 725 (760)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777776666
No 20
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.53 E-value=1.1e+02 Score=20.96 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898 148 DIATLKTKIKKLESECEMKDKEANAA-------KAEAEALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 148 ~~~~l~~e~~~Lk~el~~~~kel~~~-------~~d~~aLKkQae~l~~EYdrL~~e~ 198 (217)
++..+..++.++-.+++...+.+... +.....|+.+..+....|......|
T Consensus 50 ~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~ 107 (196)
T d1fioa_ 50 SLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNY 107 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333222 2334555555555555555554444
No 21
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.86 E-value=64 Score=24.63 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=11.8
Q ss_pred HHHHHhHhhHHHHHHHHHHHH
Q 027898 178 EALKKQSEGFLLEYDRLLADN 198 (217)
Q Consensus 178 ~aLKkQae~l~~EYdrL~~e~ 198 (217)
+-+++=.+.|+.+||.-.++|
T Consensus 248 ~e~~~~v~~LE~~yD~~~~~~ 268 (269)
T d2p90a1 248 SEIQRVVGALEQQYDSELERY 268 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHhhhhhcc
Confidence 344444566667777655543
No 22
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=21.18 E-value=24 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027898 88 MLEASLMGFLLFLSLMM 104 (217)
Q Consensus 88 l~~~YLtGF~LFL~lvI 104 (217)
+...|++||.+|..+.+
T Consensus 19 ~H~~~~~g~~~F~~iAv 35 (48)
T d1jo5a_ 19 LHSVYMSGLWLFSAVAI 35 (48)
T ss_dssp HHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34589999999998664
Done!