Query 027899
Match_columns 217
No_of_seqs 128 out of 244
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 58.6 15 0.0005 26.5 4.6 22 127-148 41-62 (79)
2 2kv9_B Integrin beta-3; platel 27.6 28 0.00096 25.1 1.8 30 119-148 29-58 (75)
3 1jek_B ENV polyprotein; envelo 19.9 31 0.0011 21.6 0.7 12 129-140 1-12 (36)
4 2wjn_L Reaction center protein 17.7 93 0.0032 27.5 3.5 37 99-135 228-265 (274)
5 3n2f_G Na+/K+ ATPase gamma sub 15.0 51 0.0017 19.9 0.8 9 190-198 5-13 (31)
6 1rzh_M Reaction center protein 14.3 1.3E+02 0.0045 26.9 3.6 40 97-136 261-300 (307)
7 1rzh_L Reaction center protein 13.1 1.3E+02 0.0044 26.7 3.1 38 99-136 227-265 (281)
8 2yy0_A C-MYC-binding protein; 12.8 77 0.0026 21.0 1.3 22 177-198 4-27 (53)
9 1xrd_A LH-1, light-harvesting 12.6 1E+02 0.0035 20.7 1.8 12 100-111 16-27 (52)
10 1s4x_A Integrin beta-3; cell a 12.5 1.4E+02 0.0047 20.9 2.6 25 124-148 26-50 (67)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=58.62 E-value=15 Score=26.51 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=16.3
Q ss_pred hhhhHHHHHhhhccccccCCCC
Q 027899 127 MKKWKKWEKETRTIDYQFSHDP 148 (217)
Q Consensus 127 ir~Wk~WE~e~~~~~~~~~~dp 148 (217)
-|.++++|+|-++...+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 7899999999777655444445
No 2
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=27.60 E-value=28 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhhHHHHHhhhccccccCCCC
Q 027899 119 TMALSRAKMKKWKKWEKETRTIDYQFSHDP 148 (217)
Q Consensus 119 Tm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp 148 (217)
-+++.+---|.|+++|+|-++...+..++|
T Consensus 29 Kll~~i~DrREyaKFEkEr~~akw~~~eNP 58 (75)
T 2kv9_B 29 KLLITIHDRKEFAKFEEERARAKWDTANNP 58 (75)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHGGGSSTTSH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccccccCC
Confidence 333444457899999999777665544445
No 3
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=19.95 E-value=31 Score=21.62 Aligned_cols=12 Identities=33% Similarity=1.019 Sum_probs=9.3
Q ss_pred hhHHHHHhhhcc
Q 027899 129 KWKKWEKETRTI 140 (217)
Q Consensus 129 ~Wk~WE~e~~~~ 140 (217)
.|-.||+++...
T Consensus 1 TWqqWereI~~~ 12 (36)
T 1jek_B 1 XWQQWEEEIEQH 12 (36)
T ss_dssp -CHHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 399999998754
No 4
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=17.68 E-value=93 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHH
Q 027899 99 HQLHIFIFVLALFHVLYSILTMALSRAK-MKKWKKWEK 135 (217)
Q Consensus 99 HQLHIFIFVLAv~HV~ys~lTm~Lg~~K-ir~Wk~WE~ 135 (217)
.-+|+|...+||.=+..|++-++|.+.- ++.|-.|=+
T Consensus 228 ~~iHr~~~~~av~~~~~saigI~lsG~~~~~~W~~ww~ 265 (274)
T 2wjn_L 228 LSIHRLGLFLASNIFLTGAFGTIASGPFWTRGWPEWWG 265 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHBTTTBCSCHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHhheeEEEecCcccCChhHHHH
Confidence 6789999999999999999999999887 888888754
No 5
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=14.98 E-value=51 Score=19.94 Aligned_cols=9 Identities=56% Similarity=0.940 Sum_probs=7.8
Q ss_pred hHHHHHHhh
Q 027899 190 VDYLTLRHG 198 (217)
Q Consensus 190 ~DYltLR~G 198 (217)
-||-+||.|
T Consensus 5 yDy~tLrig 13 (31)
T 3n2f_G 5 YDYETVRNG 13 (31)
T ss_dssp CCHHHHHHH
T ss_pred CChHHHhhc
Confidence 599999987
No 6
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Probab=14.27 E-value=1.3e+02 Score=26.92 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 027899 97 GLHQLHIFIFVLALFHVLYSILTMALSRAKMKKWKKWEKE 136 (217)
Q Consensus 97 gLHQLHIFIFVLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e 136 (217)
+..-+|++-..+||.=++.|.+-++|.+.-...|-.|-.+
T Consensus 261 ~~~~IHr~~l~~av~~~~~saigIvlsG~~~~~w~~w~~~ 300 (307)
T 1rzh_M 261 TMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQN 300 (307)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTBTTTBSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhheEEEEeCccccCHHHHHHH
Confidence 3456889999999999999999999999999999999766
No 7
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=13.14 E-value=1.3e+02 Score=26.68 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHh
Q 027899 99 HQLHIFIFVLALFHVLYSILTMALSRAK-MKKWKKWEKE 136 (217)
Q Consensus 99 HQLHIFIFVLAv~HV~ys~lTm~Lg~~K-ir~Wk~WE~e 136 (217)
.-+|.|...+||.=+..|++-++|.+.- .+.|-.|=+-
T Consensus 227 ~~iHr~~~~~av~~~~~saigI~lsG~~~~~~w~~ww~w 265 (281)
T 1rzh_L 227 LGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQW 265 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBTTTBCSCHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHhheeEEEecCcccCCccHHHHH
Confidence 6799999999999999999999998765 7888887654
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=12.79 E-value=77 Score=21.03 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=9.9
Q ss_pred HHHHHhhcC--CCChhHHHHHHhh
Q 027899 177 VCFFRQFVR--SVPKVDYLTLRHG 198 (217)
Q Consensus 177 ~~FfrQF~~--SV~k~DYltLR~G 198 (217)
+-|+||+-| +-+.+||=+||.-
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E 27 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLE 27 (53)
T ss_dssp ------------CCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHH
Confidence 457888877 7788999999853
No 9
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=12.60 E-value=1e+02 Score=20.72 Aligned_cols=12 Identities=58% Similarity=0.949 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 027899 100 QLHIFIFVLALF 111 (217)
Q Consensus 100 QLHIFIFVLAv~ 111 (217)
-+++|.||||+.
T Consensus 16 a~~~fl~vlAl~ 27 (52)
T 1xrd_A 16 GLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 478899999964
No 10
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=12.55 E-value=1.4e+02 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=17.5
Q ss_pred HHhhhhhHHHHHhhhccccccCCCC
Q 027899 124 RAKMKKWKKWEKETRTIDYQFSHDP 148 (217)
Q Consensus 124 ~~Kir~Wk~WE~e~~~~~~~~~~dp 148 (217)
+---|.|+++|+|-++...+..++|
T Consensus 26 i~DrrEyakFE~Er~~akw~~~~NP 50 (67)
T 1s4x_A 26 IHDRKEFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp HHHHHHHHHHHHHHTTTTTCSSSST
T ss_pred hhhHHHHHHHHHHHHHccccccCCC
Confidence 3336899999999776655544555
Done!