BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027900
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BIP|A Chain A, Human P53 Core Domain Mutant
M133l-H168r-V203a-N239y-R249s- N268d
Length = 219
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2BIN|A Chain A, Human P53 Core Domain Mutant M133l-H168r-V203a-N239y-N268d
Length = 219
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2BIQ|A Chain A, Human P53 Core Domain Mutant
T123a-M133l-H168r-V203a-N239y- R249s-N268d
Length = 219
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2J1X|A Chain A, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d
pdb|2J1X|B Chain B, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d
pdb|2VUK|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small-molecule Drug Phikan083
pdb|2VUK|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small-molecule Drug Phikan083
pdb|2X0U|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To A
2- Amino Substituted Benzothiazole Scaffold
pdb|2X0U|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To A
2- Amino Substituted Benzothiazole Scaffold
pdb|2X0V|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To 4-(
Trifluoromethyl)benzene-1,2-Diamine
pdb|2X0V|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To 4-(
Trifluoromethyl)benzene-1,2-Diamine
pdb|2X0W|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To
5,6- Dimethoxy-2-Methylbenzothiazole
pdb|2X0W|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To
5,6- Dimethoxy-2-Methylbenzothiazole
pdb|4AGL|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan784
pdb|4AGL|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan784
pdb|4AGM|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5086
pdb|4AGM|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5086
pdb|4AGN|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5116
pdb|4AGN|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5116
pdb|4AGO|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5174
pdb|4AGO|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5174
pdb|4AGP|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5176
pdb|4AGP|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5176
pdb|4AGQ|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5196
pdb|4AGQ|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5196
Length = 219
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|1TSR|A Chain A, P53 Core Domain In Complex With Dna
pdb|1TSR|B Chain B, P53 Core Domain In Complex With Dna
pdb|1TSR|C Chain C, P53 Core Domain In Complex With Dna
pdb|1TUP|A Chain A, Tumor Suppressor P53 Complexed With Dna
pdb|1TUP|B Chain B, Tumor Suppressor P53 Complexed With Dna
pdb|1TUP|C Chain C, Tumor Suppressor P53 Complexed With Dna
pdb|2OCJ|A Chain A, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|B Chain B, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|C Chain C, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|D Chain D, Human P53 Core Domain In The Absence Of Dna
Length = 219
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|1UOL|A Chain A, Crystal Structure Of The Human P53 Core Domain Mutant
M133lV203AN239YN268D AT 1.9 A RESOLUTION.
pdb|1UOL|B Chain B, Crystal Structure Of The Human P53 Core Domain Mutant
M133lV203AN239YN268D AT 1.9 A RESOLUTION
Length = 219
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2BIO|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-R249s-N268d
Length = 219
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2WGX|A Chain A, Human P53 Core Domain Mutant
M133l-V203a-Y236f-N239y-T253i- N268d
pdb|2WGX|B Chain B, Human P53 Core Domain Mutant
M133l-V203a-Y236f-N239y-T253i- N268d
Length = 219
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2J1W|A Chain A, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d
pdb|2J1W|B Chain B, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d
Length = 219
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V+ A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVRVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 93 ERMLEEPFAYSGAWPLPLPTETG-GFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDV 148
ERM +E FA + + TG + +G P I EG+ + +PG+ K+D+
Sbjct: 12 ERMFKEFFATPMTGTTMIQSSTGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKEDI 68
>pdb|2BIM|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h
pdb|2BIM|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h
Length = 219
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVHVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
>pdb|2J20|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c
pdb|2J20|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c
Length = 219
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 32 FDVKAQAATGESRRDNFDHLQRANSKHHQ--PQSKKRVAP 69
F+V A G RR ++L++ HH+ P S KR P
Sbjct: 177 FEVCVCACPGRDRRTEEENLRKKGEPHHELPPGSTKRALP 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,796,931
Number of Sequences: 62578
Number of extensions: 202585
Number of successful extensions: 427
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 16
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)