Query 027900
Match_columns 217
No_of_seqs 216 out of 1666
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 2.6E-22 5.6E-27 163.1 11.2 98 88-215 12-110 (137)
2 PRK11597 heat shock chaperone 99.9 5.4E-21 1.2E-25 156.5 11.3 77 121-215 31-108 (142)
3 COG0071 IbpA Molecular chapero 99.8 6.9E-20 1.5E-24 148.9 12.1 79 121-215 39-117 (146)
4 cd06470 ACD_IbpA-B_like Alpha- 99.8 3.3E-19 7.2E-24 134.3 9.9 76 123-215 1-77 (90)
5 cd06472 ACD_ScHsp26_like Alpha 99.8 1.1E-18 2.4E-23 131.3 9.5 76 124-215 1-77 (92)
6 cd06471 ACD_LpsHSP_like Group 99.7 8.1E-18 1.8E-22 126.3 9.4 77 124-215 2-78 (93)
7 cd06482 ACD_HspB10 Alpha cryst 99.7 8.1E-17 1.8E-21 121.9 8.2 67 129-215 5-71 (87)
8 cd06479 ACD_HspB7_like Alpha c 99.7 9.6E-17 2.1E-21 119.9 7.1 65 126-216 2-66 (81)
9 cd06497 ACD_alphaA-crystallin_ 99.7 2.1E-16 4.5E-21 118.8 8.6 67 126-215 4-70 (86)
10 cd06475 ACD_HspB1_like Alpha c 99.6 8.4E-16 1.8E-20 115.5 8.8 68 125-215 3-70 (86)
11 cd06478 ACD_HspB4-5-6 Alpha-cr 99.6 8.1E-16 1.8E-20 114.7 8.3 67 126-215 1-67 (83)
12 PF00011 HSP20: Hsp20/alpha cr 99.6 1.5E-15 3.3E-20 114.9 9.0 72 126-215 1-72 (102)
13 cd06477 ACD_HspB3_Like Alpha c 99.6 2.1E-15 4.6E-20 113.2 8.3 66 128-216 3-68 (83)
14 cd06498 ACD_alphaB-crystallin_ 99.6 2.3E-15 5E-20 112.7 8.3 67 127-216 2-68 (84)
15 cd06481 ACD_HspB9_like Alpha c 99.6 4E-15 8.7E-20 112.0 7.8 69 128-215 3-71 (87)
16 cd06476 ACD_HspB2_like Alpha c 99.6 1.1E-14 2.3E-19 109.1 8.2 67 127-216 2-68 (83)
17 cd06464 ACD_sHsps-like Alpha-c 99.5 5.1E-14 1.1E-18 102.2 8.7 73 126-215 1-73 (88)
18 KOG0710 Molecular chaperone (s 99.5 4.2E-14 9.1E-19 121.0 6.4 82 120-215 82-164 (196)
19 cd06526 metazoan_ACD Alpha-cry 99.4 2.4E-13 5.3E-18 100.5 6.5 62 131-215 6-67 (83)
20 cd06480 ACD_HspB8_like Alpha-c 99.3 3.5E-12 7.5E-17 97.5 7.2 67 127-216 10-76 (91)
21 cd00298 ACD_sHsps_p23-like Thi 98.9 6.1E-09 1.3E-13 72.1 7.7 65 127-215 1-65 (80)
22 KOG3591 Alpha crystallins [Pos 98.8 1.4E-08 2.9E-13 85.9 7.8 71 124-217 64-134 (173)
23 cd06469 p23_DYX1C1_like p23_li 98.3 2.1E-06 4.5E-11 61.7 5.8 53 127-215 1-53 (78)
24 cd06463 p23_like Proteins cont 97.8 7.8E-05 1.7E-09 52.8 7.0 57 128-215 2-58 (84)
25 cd06466 p23_CS_SGT1_like p23_l 97.5 0.00019 4.1E-09 52.0 5.3 38 126-163 1-38 (84)
26 PF05455 GvpH: GvpH; InterPro 97.5 0.00042 9.1E-09 59.1 7.2 39 123-161 92-132 (177)
27 PF04969 CS: CS domain; Inter 96.9 0.012 2.7E-07 41.2 8.8 41 123-163 1-43 (79)
28 cd06465 p23_hB-ind1_like p23_l 96.5 0.018 3.9E-07 44.2 8.1 39 123-163 1-39 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 96.3 0.013 2.8E-07 42.9 6.0 38 126-163 1-38 (84)
30 cd06467 p23_NUDC_like p23_like 95.2 0.074 1.6E-06 38.5 6.1 37 126-162 2-39 (85)
31 PF08190 PIH1: pre-RNA process 95.1 0.059 1.3E-06 48.3 6.5 51 131-215 260-311 (328)
32 cd06488 p23_melusin_like p23_l 94.8 0.16 3.6E-06 37.6 7.2 39 125-163 3-41 (87)
33 cd06493 p23_NUDCD1_like p23_NU 94.8 0.088 1.9E-06 38.8 5.6 36 126-161 2-38 (85)
34 cd00237 p23 p23 binds heat sho 94.8 0.24 5.2E-06 38.6 8.2 39 123-163 2-40 (106)
35 cd06468 p23_CacyBP p23_like do 94.3 0.14 3E-06 37.8 5.7 38 125-162 4-44 (92)
36 cd06494 p23_NUDCD2_like p23-li 92.6 0.36 7.7E-06 36.8 5.6 38 124-161 7-45 (93)
37 KOG1309 Suppressor of G2 allel 91.3 0.59 1.3E-05 40.4 6.0 42 123-164 4-45 (196)
38 PLN03088 SGT1, suppressor of 90.6 0.73 1.6E-05 42.5 6.5 41 123-163 157-197 (356)
39 cd06495 p23_NUDCD3_like p23-li 81.4 5.9 0.00013 30.7 6.2 40 123-162 5-46 (102)
40 cd06490 p23_NCB5OR p23_like do 76.2 6.3 0.00014 29.2 4.7 37 126-162 2-40 (87)
41 cd06477 ACD_HspB3_Like Alpha c 74.4 6.6 0.00014 29.3 4.5 30 133-162 51-82 (83)
42 cd06471 ACD_LpsHSP_like Group 73.9 5.3 0.00011 29.4 3.8 31 131-161 61-91 (93)
43 cd06464 ACD_sHsps-like Alpha-c 72.1 7.3 0.00016 27.4 4.1 33 130-162 54-87 (88)
44 cd06526 metazoan_ACD Alpha-cry 70.8 6.7 0.00015 28.4 3.7 31 132-162 50-82 (83)
45 cd06481 ACD_HspB9_like Alpha c 70.2 6.8 0.00015 29.2 3.7 32 131-162 53-86 (87)
46 PF00011 HSP20: Hsp20/alpha cr 70.0 9.2 0.0002 28.3 4.4 37 131-167 54-91 (102)
47 PF04972 BON: BON domain; Int 68.7 9.6 0.00021 25.9 4.0 26 141-166 12-37 (64)
48 cd06497 ACD_alphaA-crystallin_ 66.2 9.3 0.0002 28.4 3.7 29 134-162 55-85 (86)
49 COG5091 SGT1 Suppressor of G2 65.6 8.2 0.00018 35.8 3.9 43 121-163 175-217 (368)
50 cd06472 ACD_ScHsp26_like Alpha 65.0 11 0.00023 27.9 3.8 31 131-161 59-90 (92)
51 cd06480 ACD_HspB8_like Alpha-c 64.6 14 0.00029 28.2 4.4 30 132-161 58-89 (91)
52 cd06478 ACD_HspB4-5-6 Alpha-cr 64.5 10 0.00022 27.9 3.6 29 134-162 52-82 (83)
53 cd06492 p23_mNUDC_like p23-lik 64.0 20 0.00043 26.7 5.1 35 128-162 4-41 (87)
54 cd06498 ACD_alphaB-crystallin_ 61.5 14 0.00029 27.4 3.8 31 133-163 51-83 (84)
55 PF08308 PEGA: PEGA domain; I 59.9 30 0.00066 23.9 5.3 43 122-164 24-68 (71)
56 cd06476 ACD_HspB2_like Alpha c 59.6 18 0.0004 26.7 4.3 30 133-162 51-82 (83)
57 cd06479 ACD_HspB7_like Alpha c 56.5 19 0.0004 26.7 3.8 31 132-162 48-80 (81)
58 cd06469 p23_DYX1C1_like p23_li 55.4 37 0.00079 23.7 5.1 32 132-163 36-68 (78)
59 PF13349 DUF4097: Domain of un 54.6 65 0.0014 25.4 7.0 36 123-162 66-101 (166)
60 cd00298 ACD_sHsps_p23-like Thi 52.4 29 0.00062 23.0 4.0 32 131-162 47-79 (80)
61 COG4004 Uncharacterized protei 50.7 32 0.00069 26.8 4.3 35 125-163 26-60 (96)
62 cd06482 ACD_HspB10 Alpha cryst 48.7 30 0.00065 26.0 3.9 30 132-161 54-85 (87)
63 KOG3591 Alpha crystallins [Pos 47.9 25 0.00054 29.8 3.7 31 136-166 119-151 (173)
64 PRK11198 LysM domain/BON super 45.9 28 0.0006 28.4 3.6 26 141-166 38-63 (147)
65 KOG3158 HSP90 co-chaperone p23 43.1 57 0.0012 28.2 5.1 40 123-164 8-47 (180)
66 PF12992 DUF3876: Domain of un 42.9 94 0.002 23.9 5.9 43 120-162 23-70 (95)
67 cd02178 GH16_beta_agarase Beta 41.9 1.1E+02 0.0025 26.7 7.1 44 150-208 60-109 (258)
68 COG0071 IbpA Molecular chapero 41.8 67 0.0014 25.8 5.2 34 133-166 101-135 (146)
69 cd06475 ACD_HspB1_like Alpha c 39.7 45 0.00098 24.6 3.6 29 133-161 54-84 (86)
70 cd02175 GH16_lichenase lichena 31.5 1.3E+02 0.0029 25.3 5.7 48 145-209 31-80 (212)
71 PTZ00179 60S ribosomal protein 29.1 49 0.0011 28.4 2.6 20 145-164 12-31 (189)
72 PF07873 YabP: YabP family; I 27.1 47 0.001 23.4 1.8 21 144-164 24-44 (66)
73 cd06463 p23_like Proteins cont 25.6 2E+02 0.0044 19.4 4.9 34 131-164 40-74 (84)
74 PTZ00027 60S ribosomal protein 25.3 62 0.0013 27.8 2.6 20 145-164 13-32 (190)
75 PRK05498 rplF 50S ribosomal pr 24.3 71 0.0015 26.9 2.7 20 145-164 12-31 (178)
76 TIGR03654 L6_bact ribosomal pr 24.0 73 0.0016 26.8 2.7 20 145-164 11-30 (175)
77 PRK10568 periplasmic protein; 24.0 1.1E+02 0.0024 26.1 3.9 25 141-165 73-97 (203)
78 TIGR03653 arch_L6P archaeal ri 23.2 74 0.0016 26.8 2.6 20 145-164 7-26 (170)
79 cd02180 GH16_fungal_KRE6_gluca 23.0 1.8E+02 0.0038 26.7 5.2 45 144-209 39-91 (295)
80 PF10988 DUF2807: Protein of u 22.7 66 0.0014 25.9 2.2 38 125-163 13-50 (181)
81 PF00347 Ribosomal_L6: Ribosom 22.2 83 0.0018 22.0 2.4 20 145-164 2-21 (77)
82 CHL00140 rpl6 ribosomal protei 21.4 85 0.0018 26.5 2.6 20 145-164 12-31 (178)
83 TIGR02892 spore_yabP sporulati 21.2 71 0.0015 24.1 1.9 21 144-164 23-43 (85)
84 TIGR02856 spore_yqfC sporulati 20.7 72 0.0016 23.9 1.9 22 143-164 41-62 (85)
85 PRK05518 rpl6p 50S ribosomal p 20.6 93 0.002 26.5 2.7 20 145-164 13-32 (180)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.88 E-value=2.6e-22 Score=163.14 Aligned_cols=98 Identities=15% Similarity=0.327 Sum_probs=80.4
Q ss_pred HHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCcceeEEe-cCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccC
Q 027900 88 MMETMERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKE-GENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPK 166 (217)
Q Consensus 88 m~~~MdRlFdd~~~~~~~~p~~~~~~~~g~~~~~~ppvDI~E-t~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~ 166 (217)
+...||+||++++.... . ....+||+||++ ++++|+|+++|||++|+||+|+|++++|+|+|+++.+
T Consensus 12 ~~~~~d~lf~~~~~~~~---~---------~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 12 SAIGFDRLFNLLENNQS---Q---------SNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred cccCHHHHhhhhhhhhh---c---------ccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECcc
Confidence 45678999998774221 1 012358999994 9999999999999999999999999999999997543
Q ss_pred ccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECCCCCCCCCc
Q 027900 167 NKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALPENVQFDKD 215 (217)
Q Consensus 167 ~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LPe~Vd~dki 215 (217)
.++.+|+++||++|+|+|+|.||++||.+++
T Consensus 80 ------------------~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~A 110 (137)
T PRK10743 80 ------------------QKERTYLYQGIAERNFERKFQLAENIHVRGA 110 (137)
T ss_pred ------------------ccCCcEEEEEEECCEEEEEEECCCCcccCcC
Confidence 2345789999999999999999999999863
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.85 E-value=5.4e-21 Score=156.47 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=68.2
Q ss_pred CCcceeEEe-cCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeee
Q 027900 121 GRTPWEIKE-GENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGR 199 (217)
Q Consensus 121 ~~ppvDI~E-t~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~ 199 (217)
.+|++||+| ++++|+|+++||||+|+||+|+|++|+|+|+|+++.+ +++..|+++||+||+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~------------------~~~~~~~~~Er~~g~ 92 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQP------------------EKEVKWLHQGLVNQP 92 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccc------------------cCCCcEEEEEEeCcE
Confidence 468899998 5789999999999999999999999999999997532 235679999999999
Q ss_pred EEEEEECCCCCCCCCc
Q 027900 200 YSSRIALPENVQFDKD 215 (217)
Q Consensus 200 F~R~i~LPe~Vd~dki 215 (217)
|+|+|.||++||.+++
T Consensus 93 F~R~f~LP~~vd~~~A 108 (142)
T PRK11597 93 FSLSFTLAENMEVSGA 108 (142)
T ss_pred EEEEEECCCCcccCcC
Confidence 9999999999998754
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.9e-20 Score=148.95 Aligned_cols=79 Identities=27% Similarity=0.556 Sum_probs=71.7
Q ss_pred CCcceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeE
Q 027900 121 GRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRY 200 (217)
Q Consensus 121 ~~ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F 200 (217)
.+||+||+|++++|+|.++|||++++||+|+++++.|+|+|+++.+.+ .++..++++|+.+|+|
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~----------------~~~~~~~~~e~~~~~f 102 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEE----------------EEEEGYLRRERAYGEF 102 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEeccccc----------------ccCCceEEEEEEeeeE
Confidence 579999999999999999999999999999999999999999976322 3567899999999999
Q ss_pred EEEEECCCCCCCCCc
Q 027900 201 SSRIALPENVQFDKD 215 (217)
Q Consensus 201 ~R~i~LPe~Vd~dki 215 (217)
+|+|.||+.|+.+.|
T Consensus 103 ~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 103 ERTFRLPEKVDPEVI 117 (146)
T ss_pred EEEEECcccccccce
Confidence 999999999998754
No 4
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.80 E-value=3.3e-19 Score=134.27 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=67.3
Q ss_pred cceeEEecC-CEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEE
Q 027900 123 TPWEIKEGE-NEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYS 201 (217)
Q Consensus 123 ppvDI~Et~-d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~ 201 (217)
||+||+|++ ++|+|.++|||++|+||+|+++++.|+|+|+++... .++..++++|+.+|+|.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~-----------------~~~~~~~~~e~~~g~f~ 63 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEE-----------------NEEREYLHRGIAKRAFE 63 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccc-----------------cCCCcEEEEEEeceEEE
Confidence 579999975 999999999999999999999999999999996542 23467888999999999
Q ss_pred EEEECCCCCCCCCc
Q 027900 202 SRIALPENVQFDKD 215 (217)
Q Consensus 202 R~i~LPe~Vd~dki 215 (217)
|+|.||++||.+++
T Consensus 64 R~~~LP~~vd~~~A 77 (90)
T cd06470 64 RSFNLADHVKVKGA 77 (90)
T ss_pred EEEECCCCceECee
Confidence 99999999997643
No 5
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.78 E-value=1.1e-18 Score=131.32 Aligned_cols=76 Identities=29% Similarity=0.460 Sum_probs=66.7
Q ss_pred ceeEEecCCEEEEEEecCCCCCCCeEEEEECC-EEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEE
Q 027900 124 PWEIKEGENEYTMRFDMPGMTKQDVKVWVEEK-MLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSS 202 (217)
Q Consensus 124 pvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~-~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R 202 (217)
++||+|++++|+|.++|||++|+||+|+|+++ +|+|+|++..+.+ .++..++.+|+.+|+|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~----------------~~~~~~~~~e~~~g~f~r 64 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEE----------------KKGDDWHRVERSSGRFVR 64 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEeccccc----------------ccCCCEEEEEEeccEEEE
Confidence 37999999999999999999999999999965 9999999865422 235678889999999999
Q ss_pred EEECCCCCCCCCc
Q 027900 203 RIALPENVQFDKD 215 (217)
Q Consensus 203 ~i~LPe~Vd~dki 215 (217)
+|.||++||.++|
T Consensus 65 ~i~LP~~v~~~~i 77 (92)
T cd06472 65 RFRLPENADADEV 77 (92)
T ss_pred EEECCCCCCHHHC
Confidence 9999999998865
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.75 E-value=8.1e-18 Score=126.33 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=66.1
Q ss_pred ceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEE
Q 027900 124 PWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSR 203 (217)
Q Consensus 124 pvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~ 203 (217)
++||+|+++.|+|.++|||++++||+|+++++.|+|+|+++...+. ..++..++++||.+|+|.|+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~--------------~~~~~~~~~~e~~~g~f~r~ 67 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDE--------------KDKKGNYIRRERYYGSFSRS 67 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccc--------------ccccCCEEEEeeeccEEEEE
Confidence 5899999999999999999999999999999999999999754320 01234688899999999999
Q ss_pred EECCCCCCCCCc
Q 027900 204 IALPENVQFDKD 215 (217)
Q Consensus 204 i~LPe~Vd~dki 215 (217)
|.|| +|+.++|
T Consensus 68 ~~lp-~v~~~~i 78 (93)
T cd06471 68 FYLP-NVDEEEI 78 (93)
T ss_pred EECC-CCCHHHC
Confidence 9999 7988764
No 7
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.69 E-value=8.1e-17 Score=121.87 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=57.4
Q ss_pred ecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECCC
Q 027900 129 EGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALPE 208 (217)
Q Consensus 129 Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LPe 208 (217)
-++++|+|.+|||||+|+||+|+|++++|+|+|+++.+.+ .++ ..||++|+|.|+|.||+
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e----------------~~~----~~er~~g~F~R~f~LP~ 64 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYD----------------CLG----SKKYSYMNICKEFSLPP 64 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccc----------------cCC----ccEEEEEEEEEEEECCC
Confidence 3688999999999999999999999999999999865421 111 24889999999999999
Q ss_pred CCCCCCc
Q 027900 209 NVQFDKD 215 (217)
Q Consensus 209 ~Vd~dki 215 (217)
+||.++|
T Consensus 65 ~Vd~d~i 71 (87)
T cd06482 65 GVDEKDV 71 (87)
T ss_pred CcChHHc
Confidence 9999987
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.68 E-value=9.6e-17 Score=119.88 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=57.7
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEE
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~ 205 (217)
||+|++++|+|.+||||++|+||+|+|++++|+|+|+++.+ + +..+|+|+|+|.
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~-------------------~-------~~~~g~F~R~~~ 55 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLAS-------------------D-------GTVMNTFTHKCQ 55 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEecc-------------------C-------CCEEEEEEEEEE
Confidence 79999999999999999999999999999999999998421 1 125899999999
Q ss_pred CCCCCCCCCcC
Q 027900 206 LPENVQFDKDY 216 (217)
Q Consensus 206 LPe~Vd~dki~ 216 (217)
||++||.++|-
T Consensus 56 LP~~vd~e~v~ 66 (81)
T cd06479 56 LPEDVDPTSVS 66 (81)
T ss_pred CCCCcCHHHeE
Confidence 99999998763
No 9
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.67 E-value=2.1e-16 Score=118.78 Aligned_cols=67 Identities=18% Similarity=0.341 Sum_probs=57.3
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEE
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~ 205 (217)
+|+|++++|.|.+||||++++||+|+|++++|+|+|++.++. ++.+|+.+ .|+|+|.
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~------------------~~~~~~~~-----ef~R~~~ 60 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQ------------------DDHGYISR-----EFHRRYR 60 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee------------------CCCCEEEE-----EEEEEEE
Confidence 799999999999999999999999999999999999974321 22345544 3999999
Q ss_pred CCCCCCCCCc
Q 027900 206 LPENVQFDKD 215 (217)
Q Consensus 206 LPe~Vd~dki 215 (217)
||++||.++|
T Consensus 61 LP~~Vd~~~i 70 (86)
T cd06497 61 LPSNVDQSAI 70 (86)
T ss_pred CCCCCChHHe
Confidence 9999998876
No 10
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.64 E-value=8.4e-16 Score=115.50 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=57.7
Q ss_pred eeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEE
Q 027900 125 WEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRI 204 (217)
Q Consensus 125 vDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i 204 (217)
.||+|++++|+|.++|||++|+||+|.|+++.|+|+|++..+. ++.++ ..++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~------------------~~~~~-----~~~~f~R~f 59 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQ------------------DEHGF-----VSRCFTRKY 59 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCc------------------CCCCE-----EEEEEEEEE
Confidence 4999999999999999999999999999999999999985321 11222 245899999
Q ss_pred ECCCCCCCCCc
Q 027900 205 ALPENVQFDKD 215 (217)
Q Consensus 205 ~LPe~Vd~dki 215 (217)
.||++||.++|
T Consensus 60 ~LP~~vd~~~v 70 (86)
T cd06475 60 TLPPGVDPTAV 70 (86)
T ss_pred ECCCCCCHHHc
Confidence 99999999876
No 11
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.64 E-value=8.1e-16 Score=114.67 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=56.3
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEE
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~ 205 (217)
+|.+++++|+|.+|||||+++||+|+++++.|+|+|++..+ .++.+++++ .|+|+|.
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~------------------~~~~~~~~~-----ef~R~~~ 57 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEER------------------QDEHGFISR-----EFHRRYR 57 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceE------------------cCCCCEEEE-----EEEEEEE
Confidence 47899999999999999999999999999999999987432 122345544 4999999
Q ss_pred CCCCCCCCCc
Q 027900 206 LPENVQFDKD 215 (217)
Q Consensus 206 LPe~Vd~dki 215 (217)
||.+||.++|
T Consensus 58 LP~~vd~~~i 67 (83)
T cd06478 58 LPPGVDPAAI 67 (83)
T ss_pred CCCCcChHHe
Confidence 9999998876
No 12
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.63 E-value=1.5e-15 Score=114.92 Aligned_cols=72 Identities=35% Similarity=0.677 Sum_probs=58.8
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEE
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~ 205 (217)
||+|++++|.|.++|||++++||+|+++++.|+|+|++... .++..+++.|+++|.|.|+|.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~------------------~~~~~~~~~~~~~~~f~r~~~ 62 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEE------------------EEDDRYYRSERRYGSFERSIR 62 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGE------------------ECTTCEEEE-S-SEEEEEEEE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeee------------------eeeeeeeecccccceEEEEEc
Confidence 89999999999999999999999999999999999999721 234577889999999999999
Q ss_pred CCCCCCCCCc
Q 027900 206 LPENVQFDKD 215 (217)
Q Consensus 206 LPe~Vd~dki 215 (217)
||++||.++|
T Consensus 63 lP~~vd~~~i 72 (102)
T PF00011_consen 63 LPEDVDPDKI 72 (102)
T ss_dssp -STTB-GGG-
T ss_pred CCCcCCcceE
Confidence 9999999875
No 13
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.61 E-value=2.1e-15 Score=113.19 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=55.2
Q ss_pred EecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECC
Q 027900 128 KEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALP 207 (217)
Q Consensus 128 ~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LP 207 (217)
-|+++.|+|+++||||+|+||+|+|++++|+|+|++..+. ++.++ .+++|+|+|.||
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~------------------~~~~~-----~~r~F~R~~~LP 59 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRM------------------DEHGF-----ISRSFTRQYQLP 59 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcccc------------------CCCCE-----EEEEEEEEEECC
Confidence 4789999999999999999999999999999999986532 12223 234999999999
Q ss_pred CCCCCCCcC
Q 027900 208 ENVQFDKDY 216 (217)
Q Consensus 208 e~Vd~dki~ 216 (217)
++||.++|-
T Consensus 60 ~~Vd~~~v~ 68 (83)
T cd06477 60 DGVEHKDLS 68 (83)
T ss_pred CCcchheEE
Confidence 999998873
No 14
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.61 E-value=2.3e-15 Score=112.74 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=56.0
Q ss_pred EEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEEC
Q 027900 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIAL 206 (217)
Q Consensus 127 I~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~L 206 (217)
+++++++|.|.+|||||+|+||+|+|++++|+|+|++..+. ++.++++ +.|+|+|.|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~------------------~~~~~~~-----~eF~R~~~L 58 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQ------------------DEHGFIS-----REFQRKYRI 58 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee------------------CCCCEEE-----EEEEEEEEC
Confidence 57899999999999999999999999999999999874321 2234443 359999999
Q ss_pred CCCCCCCCcC
Q 027900 207 PENVQFDKDY 216 (217)
Q Consensus 207 Pe~Vd~dki~ 216 (217)
|++||.++|-
T Consensus 59 P~~vd~~~i~ 68 (84)
T cd06498 59 PADVDPLTIT 68 (84)
T ss_pred CCCCChHHcE
Confidence 9999998763
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.59 E-value=4e-15 Score=112.03 Aligned_cols=69 Identities=25% Similarity=0.501 Sum_probs=56.8
Q ss_pred EecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECC
Q 027900 128 KEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALP 207 (217)
Q Consensus 128 ~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LP 207 (217)
.+..+.|+|.++|||++++||+|+|++++|+|+|++..+.+ .+...+. +.+|+|+|+|.||
T Consensus 3 ~~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~----------------~~~~~~~---~~~~~F~R~~~LP 63 (87)
T cd06481 3 KDGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNE----------------DEKGSFS---YEYQEFVREAQLP 63 (87)
T ss_pred CCccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecc----------------cCCCcEE---EEeeEEEEEEECC
Confidence 36788999999999999999999999999999999854321 1122332 4689999999999
Q ss_pred CCCCCCCc
Q 027900 208 ENVQFDKD 215 (217)
Q Consensus 208 e~Vd~dki 215 (217)
++||.++|
T Consensus 64 ~~Vd~~~i 71 (87)
T cd06481 64 EHVDPEAV 71 (87)
T ss_pred CCcChHHe
Confidence 99998876
No 16
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.57 E-value=1.1e-14 Score=109.10 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=54.8
Q ss_pred EEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEEC
Q 027900 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIAL 206 (217)
Q Consensus 127 I~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~L 206 (217)
+.-++++|.|.+||||++++||+|++++++|+|+|+++.+ .++.+++ ++.|+|+|.|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~------------------~~~~~~~-----~~eF~R~~~L 58 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQR------------------MDRHGFV-----SREFTRTYIL 58 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcce------------------ecCCCEE-----EEEEEEEEEC
Confidence 3457899999999999999999999999999999998432 1122333 4469999999
Q ss_pred CCCCCCCCcC
Q 027900 207 PENVQFDKDY 216 (217)
Q Consensus 207 Pe~Vd~dki~ 216 (217)
|++||.++|-
T Consensus 59 P~~vd~~~v~ 68 (83)
T cd06476 59 PMDVDPLLVR 68 (83)
T ss_pred CCCCChhhEE
Confidence 9999998873
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.53 E-value=5.1e-14 Score=102.19 Aligned_cols=73 Identities=33% Similarity=0.592 Sum_probs=63.5
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEE
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~ 205 (217)
||.|++++|+|.++|||++++||+|++.++.|.|+|++..... ....+...++.+|.|.|+|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~-----------------~~~~~~~~~~~~~~f~r~~~ 63 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEE-----------------EEENYLRRERSYGSFSRSFR 63 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccc-----------------cCCcEEEEEEeCcEEEEEEE
Confidence 5789999999999999999999999999999999999975432 11256668999999999999
Q ss_pred CCCCCCCCCc
Q 027900 206 LPENVQFDKD 215 (217)
Q Consensus 206 LPe~Vd~dki 215 (217)
||.+||.+++
T Consensus 64 LP~~vd~~~i 73 (88)
T cd06464 64 LPEDVDPDKI 73 (88)
T ss_pred CCCCcCHHHc
Confidence 9999998765
No 18
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.2e-14 Score=120.97 Aligned_cols=82 Identities=28% Similarity=0.633 Sum_probs=71.8
Q ss_pred CCCcceeEEecCCEEEEEEecCCCCCCCeEEEEECC-EEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeee
Q 027900 120 RGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEK-MLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYG 198 (217)
Q Consensus 120 ~~~ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~-~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G 198 (217)
..+++|+|+|+++.|++.++|||+.++||+|.++++ +|+|+|++..+.+. ..++..++|.|+.+|
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~--------------~~~~~~~~~~E~~~g 147 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEE--------------SGSGKKWKRVERKLG 147 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccccc--------------ccCCccceeehhccc
Confidence 457889999999999999999999999999999988 89999999766431 134567899999999
Q ss_pred eEEEEEECCCCCCCCCc
Q 027900 199 RYSSRIALPENVQFDKD 215 (217)
Q Consensus 199 ~F~R~i~LPe~Vd~dki 215 (217)
.|.|+|.||++|+.+.|
T Consensus 148 ~F~r~~~lPenv~~d~i 164 (196)
T KOG0710|consen 148 KFKRRFELPENVDVDEI 164 (196)
T ss_pred ceEeeecCCccccHHHH
Confidence 99999999999988765
No 19
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.44 E-value=2.4e-13 Score=100.54 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=52.2
Q ss_pred CCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECCCCC
Q 027900 131 ENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALPENV 210 (217)
Q Consensus 131 ~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LPe~V 210 (217)
.+.|+|.+||||++++||+|+|+++.|+|+|+++... + . .++.+|+|.|+|.||++|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~------------------~--~---~~~~~~~f~r~~~LP~~v 62 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERE------------------D--E---HGYVSREFTRRYQLPEGV 62 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeec------------------c--C---CCEEEEEEEEEEECCCCC
Confidence 3699999999999999999999999999999985421 1 1 124578999999999999
Q ss_pred CCCCc
Q 027900 211 QFDKD 215 (217)
Q Consensus 211 d~dki 215 (217)
|.++|
T Consensus 63 d~~~i 67 (83)
T cd06526 63 DPDSV 67 (83)
T ss_pred ChHHe
Confidence 99865
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.33 E-value=3.5e-12 Score=97.47 Aligned_cols=67 Identities=10% Similarity=0.213 Sum_probs=55.9
Q ss_pred EEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEEC
Q 027900 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIAL 206 (217)
Q Consensus 127 I~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~L 206 (217)
+..+++.|.|.+|+.|+++|||+|.+.++.|+|+|+++.+. ++.++ ..++|+|+|.|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~------------------~e~g~-----~~r~F~R~~~L 66 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQ------------------KEGGI-----VSKNFTKKIQL 66 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECccc------------------CCCCE-----EEEEEEEEEEC
Confidence 34678899999999999999999999999999999986432 11222 34799999999
Q ss_pred CCCCCCCCcC
Q 027900 207 PENVQFDKDY 216 (217)
Q Consensus 207 Pe~Vd~dki~ 216 (217)
|++||.+.|-
T Consensus 67 P~~Vd~~~v~ 76 (91)
T cd06480 67 PPEVDPVTVF 76 (91)
T ss_pred CCCCCchhEE
Confidence 9999998874
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.92 E-value=6.1e-09 Score=72.15 Aligned_cols=65 Identities=31% Similarity=0.621 Sum_probs=55.8
Q ss_pred EEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEEC
Q 027900 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIAL 206 (217)
Q Consensus 127 I~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~L 206 (217)
++++++.|.|++++||+.+++|+|.+.++.|+|+|.+.... . .+...+.|.+.+.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~-------------------~-----~~~~~~~~~~~~~L 56 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEE-------------------E-----RERSYGEFERSFEL 56 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCC-------------------c-----ceEeeeeEEEEEEC
Confidence 46888999999999999999999999999999999985321 1 45567899999999
Q ss_pred CCCCCCCCc
Q 027900 207 PENVQFDKD 215 (217)
Q Consensus 207 Pe~Vd~dki 215 (217)
|..|+.+++
T Consensus 57 ~~~i~~~~~ 65 (80)
T cd00298 57 PEDVDPEKS 65 (80)
T ss_pred CCCcCHHHC
Confidence 999998754
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.4e-08 Score=85.91 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=60.1
Q ss_pred ceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEE
Q 027900 124 PWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSR 203 (217)
Q Consensus 124 pvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~ 203 (217)
..+|..+.+.|.|.+|+..+++++|+|.+.|++|.|.|++.++. ++.++. ..+|.|+
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~------------------d~~G~v-----~R~F~R~ 120 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKE------------------DEHGYV-----SRSFVRK 120 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeecccc------------------CCCCeE-----EEEEEEE
Confidence 36889999999999999999999999999999999999996542 223332 3479999
Q ss_pred EECCCCCCCCCcCC
Q 027900 204 IALPENVQFDKDYS 217 (217)
Q Consensus 204 i~LPe~Vd~dki~~ 217 (217)
|.||++||++.|.|
T Consensus 121 y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 121 YLLPEDVDPTSVTS 134 (173)
T ss_pred ecCCCCCChhheEE
Confidence 99999999998864
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.27 E-value=2.1e-06 Score=61.74 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=45.4
Q ss_pred EEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEEC
Q 027900 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIAL 206 (217)
Q Consensus 127 I~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~L 206 (217)
++++++.+.|++++||+.++||+|++++++|+|+|. .|.+.+.|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~------------------------------------~~~~~~~l 44 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFP------------------------------------PYLFELDL 44 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcCC------------------------------------CEEEEEeC
Confidence 368899999999999999999999999999999761 26778888
Q ss_pred CCCCCCCCc
Q 027900 207 PENVQFDKD 215 (217)
Q Consensus 207 Pe~Vd~dki 215 (217)
|..||+++.
T Consensus 45 ~~~I~~e~~ 53 (78)
T cd06469 45 AAPIDDEKS 53 (78)
T ss_pred ccccccccc
Confidence 888887764
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.84 E-value=7.8e-05 Score=52.82 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=47.8
Q ss_pred EecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECC
Q 027900 128 KEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALP 207 (217)
Q Consensus 128 ~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LP 207 (217)
+++++.+.|.+.+||+.+++++|.+.++.|+|++.... .+.|...+.|+
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~-------------------------------~~~~~~~~~L~ 50 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG-------------------------------GKEYLLEGELF 50 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC-------------------------------CCceEEeeEcc
Confidence 57899999999999999999999999999999987520 13477888899
Q ss_pred CCCCCCCc
Q 027900 208 ENVQFDKD 215 (217)
Q Consensus 208 e~Vd~dki 215 (217)
.+|+.++.
T Consensus 51 ~~I~~~~s 58 (84)
T cd06463 51 GPIDPEES 58 (84)
T ss_pred Cccchhhc
Confidence 99988753
No 25
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.54 E-value=0.00019 Score=51.98 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=35.6
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
|++++++.+.|.+.+||+.++||+|.++++.|.|++..
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~ 38 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIIL 38 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEEC
Confidence 67899999999999999999999999999999998774
No 26
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.46 E-value=0.00042 Score=59.08 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=31.4
Q ss_pred cceeEEecCC-EEEEEEecCCCCCCC-eEEEEECCEEEEEE
Q 027900 123 TPWEIKEGEN-EYTMRFDMPGMTKQD-VKVWVEEKMLVVKA 161 (217)
Q Consensus 123 ppvDI~Et~d-~y~V~~dLPGv~keD-V~V~Ved~~L~I~G 161 (217)
+-+++.+.++ +++|.|||||++++| |+|.|+.+.+.|..
T Consensus 92 ~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i 132 (177)
T PF05455_consen 92 IHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTI 132 (177)
T ss_pred eeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEE
Confidence 4489998777 799999999999998 99999855444443
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=96.87 E-value=0.012 Score=41.16 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=35.6
Q ss_pred cceeEEecCCEEEEEEecCCC--CCCCeEEEEECCEEEEEEEe
Q 027900 123 TPWEIKEGENEYTMRFDMPGM--TKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv--~keDV~V~Ved~~L~I~Ge~ 163 (217)
|.++++++++.+.|.+.+++. +++||+|.++++.|.|+...
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~ 43 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKS 43 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEc
Confidence 458999999999999999665 59999999999999999764
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.52 E-value=0.018 Score=44.23 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=36.1
Q ss_pred cceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 123 TPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
|+++++.+.+.+.|++.+||+ ++++|.+..+.|.|++..
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~ 39 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKG 39 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEc
Confidence 468999999999999999998 999999999999999854
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.31 E-value=0.013 Score=42.89 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=35.5
Q ss_pred eEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
|++.+++.+.|.+.++|+.++++.|.++++.|.+++..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~ 38 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKL 38 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEEC
Confidence 67889999999999999999999999999999999865
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=95.18 E-value=0.074 Score=38.46 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=33.9
Q ss_pred eEEecCCEEEEEEecC-CCCCCCeEEEEECCEEEEEEE
Q 027900 126 EIKEGENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 126 DI~Et~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~Ge 162 (217)
+++++++++.|.+.+| |+.++||+|.+..+.|+|+..
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 5688999999999997 889999999999999999875
No 31
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.11 E-value=0.059 Score=48.29 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=43.8
Q ss_pred CCEEEEEEecCCC-CCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEEEEeeeeeEEEEEECCCC
Q 027900 131 ENEYTMRFDMPGM-TKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALPEN 209 (217)
Q Consensus 131 ~d~y~V~~dLPGv-~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~~Er~~G~F~R~i~LPe~ 209 (217)
.+.++|+++|||+ +..+|+|.|.++.|.|..... .|.=.+.||..
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------------------------------~y~L~l~LP~~ 305 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------------------------------KYRLDLPLPYP 305 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------------------------------ceEEEccCCCc
Confidence 5899999999999 899999999999999987641 36667999999
Q ss_pred CCCCCc
Q 027900 210 VQFDKD 215 (217)
Q Consensus 210 Vd~dki 215 (217)
||.+.+
T Consensus 306 V~~~~~ 311 (328)
T PF08190_consen 306 VDEDNG 311 (328)
T ss_pred ccCCCc
Confidence 998764
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=94.81 E-value=0.16 Score=37.62 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=35.9
Q ss_pred eeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 125 WEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 125 vDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
.|++.+++.+.|.+.+.|+.++++.|.++++.|+|+...
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~ 41 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVF 41 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEEC
Confidence 589999999999999999999999999999999987654
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=94.79 E-value=0.088 Score=38.78 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=33.3
Q ss_pred eEEecCCEEEEEEecC-CCCCCCeEEEEECCEEEEEE
Q 027900 126 EIKEGENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKA 161 (217)
Q Consensus 126 DI~Et~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~G 161 (217)
+++.+.+++.|.+.+| |+.++||+|.++.+.|+|..
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~ 38 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIAL 38 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEe
Confidence 5688999999999996 99999999999999999975
No 34
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=94.75 E-value=0.24 Score=38.65 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=35.6
Q ss_pred cceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 123 TPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
|+++++.+.+.+.|++++|+ .+|++|.++++.|+++|..
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~ 40 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLN 40 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEEC
Confidence 56899999999999999999 5899999999999999843
No 35
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=94.27 E-value=0.14 Score=37.76 Aligned_cols=38 Identities=11% Similarity=0.315 Sum_probs=35.4
Q ss_pred eeEEecCCEEEEEEecCCCCC---CCeEEEEECCEEEEEEE
Q 027900 125 WEIKEGENEYTMRFDMPGMTK---QDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 125 vDI~Et~d~y~V~~dLPGv~k---eDV~V~Ved~~L~I~Ge 162 (217)
.+++++++.+.|.+.+|+..+ +||+|.+..+.|.|++.
T Consensus 4 y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~ 44 (92)
T cd06468 4 YAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVH 44 (92)
T ss_pred eeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEE
Confidence 688999999999999999987 99999999999999984
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=92.61 E-value=0.36 Score=36.84 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=35.1
Q ss_pred ceeEEecCCEEEEEEecC-CCCCCCeEEEEECCEEEEEE
Q 027900 124 PWEIKEGENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKA 161 (217)
Q Consensus 124 pvDI~Et~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~G 161 (217)
-.++..+.+++.|++.+| |+++.||+|.+..+.|.|.-
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 368899999999999998 99999999999999999875
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=91.27 E-value=0.59 Score=40.42 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=38.7
Q ss_pred cceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEec
Q 027900 123 TPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~ 164 (217)
+..|+++++..++|.+-.+|+.++||.|.+.+++|.|.-.-.
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~ 45 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLP 45 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecC
Confidence 458999999999999999999999999999999999987763
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.60 E-value=0.73 Score=42.50 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=37.8
Q ss_pred cceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 123 TPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
+..|++.+++.++|.+.+.|+.+++|.|.+.++.|.|+-..
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~ 197 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEV 197 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEec
Confidence 45899999999999999999999999999999999998754
No 39
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=81.44 E-value=5.9 Score=30.74 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=33.9
Q ss_pred cceeEEecCCEEEEEEecC-CC-CCCCeEEEEECCEEEEEEE
Q 027900 123 TPWEIKEGENEYTMRFDMP-GM-TKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLP-Gv-~keDV~V~Ved~~L~I~Ge 162 (217)
..+-+..|.+++.|++.|| |. +..||.|.+.-+.|.|.-.
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~ 46 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVR 46 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEe
Confidence 3467788999999999999 64 5799999999998888764
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=76.20 E-value=6.3 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=30.0
Q ss_pred eEEecCCEEEEEEecCC--CCCCCeEEEEECCEEEEEEE
Q 027900 126 EIKEGENEYTMRFDMPG--MTKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 126 DI~Et~d~y~V~~dLPG--v~keDV~V~Ved~~L~I~Ge 162 (217)
|++.+++.++|.+-..+ ..+.+|.|....+.|+|+-.
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~ 40 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEII 40 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEE
Confidence 88999999999999885 56666667777888988754
No 41
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=74.43 E-value=6.6 Score=29.26 Aligned_cols=30 Identities=23% Similarity=0.670 Sum_probs=27.4
Q ss_pred EEEEEEecC-CCCCCCeEEEE-ECCEEEEEEE
Q 027900 133 EYTMRFDMP-GMTKQDVKVWV-EEKMLVVKAQ 162 (217)
Q Consensus 133 ~y~V~~dLP-Gv~keDV~V~V-ed~~L~I~Ge 162 (217)
.|.=++.|| +++.+.|+=.+ ++++|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 778889999 99999999998 7999999985
No 42
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=73.91 E-value=5.3 Score=29.42 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCEEEEEEecCCCCCCCeEEEEECCEEEEEE
Q 027900 131 ENEYTMRFDMPGMTKQDVKVWVEEKMLVVKA 161 (217)
Q Consensus 131 ~d~y~V~~dLPGv~keDV~V~Ved~~L~I~G 161 (217)
-..|.-.+.||.++.+.|+-++.+++|+|+-
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 3456777889999999999999999999974
No 43
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=72.15 E-value=7.3 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=29.4
Q ss_pred cCCEEEEEEecC-CCCCCCeEEEEECCEEEEEEE
Q 027900 130 GENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 130 t~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~Ge 162 (217)
....|.-++.|| +++.+.++..+.+++|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 367899999999 889999999999999999864
No 44
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=70.85 E-value=6.7 Score=28.44 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=27.8
Q ss_pred CEEEEEEecC-CCCCCCeEEEEEC-CEEEEEEE
Q 027900 132 NEYTMRFDMP-GMTKQDVKVWVEE-KMLVVKAQ 162 (217)
Q Consensus 132 d~y~V~~dLP-Gv~keDV~V~Ved-~~L~I~Ge 162 (217)
..|.=++.|| +++++.|+-.+.+ ++|+|+..
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 4788899999 8999999999997 99999864
No 45
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=70.18 E-value=6.8 Score=29.17 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.7
Q ss_pred CCEEEEEEecC-CCCCCCeEEEE-ECCEEEEEEE
Q 027900 131 ENEYTMRFDMP-GMTKQDVKVWV-EEKMLVVKAQ 162 (217)
Q Consensus 131 ~d~y~V~~dLP-Gv~keDV~V~V-ed~~L~I~Ge 162 (217)
...|.=.|.|| +++.+.|+-++ .+++|+|++-
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 86 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAP 86 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCceEEEEcC
Confidence 46788999999 89999999999 8999999863
No 46
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=69.99 E-value=9.2 Score=28.27 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=29.0
Q ss_pred CCEEEEEEecC-CCCCCCeEEEEECCEEEEEEEeccCc
Q 027900 131 ENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKAQKVPKN 167 (217)
Q Consensus 131 ~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~Ge~~~~~ 167 (217)
...|.-.+.|| +++.+.|+-.+++|+|+|+.-+....
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred cceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 45677789999 89999999999999999999986553
No 47
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=68.74 E-value=9.6 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=20.8
Q ss_pred CCCCCCCeEEEEECCEEEEEEEeccC
Q 027900 141 PGMTKQDVKVWVEEKMLVVKAQKVPK 166 (217)
Q Consensus 141 PGv~keDV~V~Ved~~L~I~Ge~~~~ 166 (217)
|+++..+|+|.+.++.++|+|.-...
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSC
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHH
Confidence 46777789999999999999998543
No 48
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=66.21 E-value=9.3 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.443 Sum_probs=26.1
Q ss_pred EEEEEecC-CCCCCCeEEEE-ECCEEEEEEE
Q 027900 134 YTMRFDMP-GMTKQDVKVWV-EEKMLVVKAQ 162 (217)
Q Consensus 134 y~V~~dLP-Gv~keDV~V~V-ed~~L~I~Ge 162 (217)
|.=++.|| +++.+.|+=.+ ++++|+|+.-
T Consensus 55 f~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 77789998 89999999999 7999999864
No 49
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=65.56 E-value=8.2 Score=35.84 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=39.6
Q ss_pred CCcceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 121 GRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 121 ~~ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
..+.||..+|-..+.|.+.-|-+..++|.+-+++|+|.|+-.-
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~ 217 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQP 217 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeec
Confidence 4577999999999999999999999999999999999998764
No 50
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=65.00 E-value=11 Score=27.88 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=27.9
Q ss_pred CCEEEEEEecC-CCCCCCeEEEEECCEEEEEE
Q 027900 131 ENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKA 161 (217)
Q Consensus 131 ~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~G 161 (217)
...|.-.+.|| +++.+.|+-...+++|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 45888899999 79999999999999999974
No 51
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=64.61 E-value=14 Score=28.19 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=27.2
Q ss_pred CEEEEEEecC-CCCCCCeEEEEE-CCEEEEEE
Q 027900 132 NEYTMRFDMP-GMTKQDVKVWVE-EKMLVVKA 161 (217)
Q Consensus 132 d~y~V~~dLP-Gv~keDV~V~Ve-d~~L~I~G 161 (217)
..|.=++.|| |++.++|+=.+. +++|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5677789999 999999999998 99999986
No 52
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=64.51 E-value=10 Score=27.91 Aligned_cols=29 Identities=14% Similarity=0.478 Sum_probs=26.1
Q ss_pred EEEEEecC-CCCCCCeEEEE-ECCEEEEEEE
Q 027900 134 YTMRFDMP-GMTKQDVKVWV-EEKMLVVKAQ 162 (217)
Q Consensus 134 y~V~~dLP-Gv~keDV~V~V-ed~~L~I~Ge 162 (217)
|.=.+.|| +++.+.|+-.+ .+|+|+|+.-
T Consensus 52 f~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 52 FHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred EEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 78889999 89999999999 6999999864
No 53
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=63.99 E-value=20 Score=26.67 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.1
Q ss_pred EecCCEEEEEEecC-C--CCCCCeEEEEECCEEEEEEE
Q 027900 128 KEGENEYTMRFDMP-G--MTKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 128 ~Et~d~y~V~~dLP-G--v~keDV~V~Ved~~L~I~Ge 162 (217)
..|.+++.|++.+| | +++.||+|.+.-+.|.|.-.
T Consensus 4 ~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~ 41 (87)
T cd06492 4 TQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK 41 (87)
T ss_pred EeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC
Confidence 46778899999996 3 89999999999998888653
No 54
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=61.49 E-value=14 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.386 Sum_probs=27.4
Q ss_pred EEEEEEecC-CCCCCCeEEEEE-CCEEEEEEEe
Q 027900 133 EYTMRFDMP-GMTKQDVKVWVE-EKMLVVKAQK 163 (217)
Q Consensus 133 ~y~V~~dLP-Gv~keDV~V~Ve-d~~L~I~Ge~ 163 (217)
+|.=.+.|| +++.+.|+=++. +++|+|+.-+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 477889999 899999999995 9999998764
No 55
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=59.93 E-value=30 Score=23.94 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=35.4
Q ss_pred CcceeEE-ecCCEEEEEEecCCCCCCCeEEEEE-CCEEEEEEEec
Q 027900 122 RTPWEIK-EGENEYTMRFDMPGMTKQDVKVWVE-EKMLVVKAQKV 164 (217)
Q Consensus 122 ~ppvDI~-Et~d~y~V~~dLPGv~keDV~V~Ve-d~~L~I~Ge~~ 164 (217)
..|+.+. =....|.|++..||+....-.|.|. +....|+.+-+
T Consensus 24 ~tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 24 TTPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 5677777 4688999999999999999999998 66888877653
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=59.60 E-value=18 Score=26.69 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=26.5
Q ss_pred EEEEEEecC-CCCCCCeEEEEE-CCEEEEEEE
Q 027900 133 EYTMRFDMP-GMTKQDVKVWVE-EKMLVVKAQ 162 (217)
Q Consensus 133 ~y~V~~dLP-Gv~keDV~V~Ve-d~~L~I~Ge 162 (217)
+|.=++.|| +++.+.|+=... +++|+|+.-
T Consensus 51 eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~P 82 (83)
T cd06476 51 EFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82 (83)
T ss_pred EEEEEEECCCCCChhhEEEEecCCCEEEEEec
Confidence 378889999 899999999996 999999863
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=56.49 E-value=19 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.1
Q ss_pred CEEEEEEecC-CCCCCCeEEEE-ECCEEEEEEE
Q 027900 132 NEYTMRFDMP-GMTKQDVKVWV-EEKMLVVKAQ 162 (217)
Q Consensus 132 d~y~V~~dLP-Gv~keDV~V~V-ed~~L~I~Ge 162 (217)
..|.=++.|| +++.+.|+=.+ ++++|+|+..
T Consensus 48 g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 48 NTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred EEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 3566677888 89999999998 8999999875
No 58
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=55.37 E-value=37 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred CEEEEEEecC-CCCCCCeEEEEECCEEEEEEEe
Q 027900 132 NEYTMRFDMP-GMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 132 d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~Ge~ 163 (217)
+.|.+.++|| .+++++.+..+.++.|.|+=.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEe
Confidence 4588888999 5699999999999999999665
No 59
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=54.63 E-value=65 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=24.2
Q ss_pred cceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEE
Q 027900 123 TPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge 162 (217)
..+.|...++ ..+.+.. ..+.+++.+++++|+|+..
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~ 101 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSK 101 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEe
Confidence 3577777443 3334444 3227999999999999887
No 60
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=52.42 E-value=29 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=27.5
Q ss_pred CCEEEEEEecC-CCCCCCeEEEEECCEEEEEEE
Q 027900 131 ENEYTMRFDMP-GMTKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 131 ~d~y~V~~dLP-Gv~keDV~V~Ved~~L~I~Ge 162 (217)
...|...+.|| .++++.+...+.++.|+|.-.
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 57899999999 458888999999999999754
No 61
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.74 E-value=32 Score=26.76 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=28.8
Q ss_pred eeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 125 WEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 125 vDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
|+|.+.+| .|.+..||++ .|.|+++.+.|.|.+..
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t~~ 60 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNTTD 60 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEeccc
Confidence 67777777 6778999996 58999999999999843
No 62
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=48.74 E-value=30 Score=25.98 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=25.9
Q ss_pred CEEEEEEecC-CCCCCCeEEEEECC-EEEEEE
Q 027900 132 NEYTMRFDMP-GMTKQDVKVWVEEK-MLVVKA 161 (217)
Q Consensus 132 d~y~V~~dLP-Gv~keDV~V~Ved~-~L~I~G 161 (217)
..|.=+|.|| +++.+.|+=+..++ +|+|.+
T Consensus 54 g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~ 85 (87)
T cd06482 54 MNICKEFSLPPGVDEKDVTYSYGLGSVVKIET 85 (87)
T ss_pred EEEEEEEECCCCcChHHcEEEEcCCCEEEEee
Confidence 4566789999 89999999999977 999976
No 63
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=25 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=26.5
Q ss_pred EEEecC-CCCCCCeEEEEE-CCEEEEEEEeccC
Q 027900 136 MRFDMP-GMTKQDVKVWVE-EKMLVVKAQKVPK 166 (217)
Q Consensus 136 V~~dLP-Gv~keDV~V~Ve-d~~L~I~Ge~~~~ 166 (217)
=++-|| |++++.|.=.+. +|+|+|+|.+.+.
T Consensus 119 R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 119 RKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EEecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 356688 999999999996 8999999998654
No 64
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=45.85 E-value=28 Score=28.38 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCCCCCCeEEEEECCEEEEEEEeccC
Q 027900 141 PGMTKQDVKVWVEEKMLVVKAQKVPK 166 (217)
Q Consensus 141 PGv~keDV~V~Ved~~L~I~Ge~~~~ 166 (217)
-|+...+|+|.|++++++|+|.-...
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCH
Confidence 58888899999999999999987543
No 65
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=43.09 E-value=57 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=34.8
Q ss_pred cceeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEec
Q 027900 123 TPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 123 ppvDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++-+.++.+-+.|++.++ +..|++|.++...|+++|...
T Consensus 8 p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~ 47 (180)
T KOG3158|consen 8 PEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSG 47 (180)
T ss_pred CcchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccC
Confidence 4588889999999999998 567899999999999999875
No 66
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=42.87 E-value=94 Score=23.93 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=34.3
Q ss_pred CCCcceeEEecCCEEEEEEecCCC-----CCCCeEEEEECCEEEEEEE
Q 027900 120 RGRTPWEIKEGENEYTMRFDMPGM-----TKQDVKVWVEEKMLVVKAQ 162 (217)
Q Consensus 120 ~~~ppvDI~Et~d~y~V~~dLPGv-----~keDV~V~Ved~~L~I~Ge 162 (217)
.+.|++.|+++++.|.|.+--+.- .++...|.-+++.|-|.-.
T Consensus 23 ~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~g 70 (95)
T PF12992_consen 23 NGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIETG 70 (95)
T ss_pred CCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEecC
Confidence 346889999999999999877764 6777778877888888643
No 67
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=41.89 E-value=1.1e+02 Score=26.70 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=27.8
Q ss_pred EEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcE----E--EEeeeeeEEEEEECCC
Q 027900 150 VWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGD----W--SAKSYGRYSSRIALPE 208 (217)
Q Consensus 150 V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~----~--~Er~~G~F~R~i~LPe 208 (217)
|.|+++.|+|++.+..... + .....+. . ....||.|+-++.||.
T Consensus 60 v~v~~G~L~i~a~~~~~~~-----------~----~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTE-----------L----GNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEECCEEEEEEEcCCCCc-----------C----CCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 6778999999998754311 0 0011111 1 1346899999999995
No 68
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=67 Score=25.78 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=26.7
Q ss_pred EEEEEEecC-CCCCCCeEEEEECCEEEEEEEeccC
Q 027900 133 EYTMRFDMP-GMTKQDVKVWVEEKMLVVKAQKVPK 166 (217)
Q Consensus 133 ~y~V~~dLP-Gv~keDV~V~Ved~~L~I~Ge~~~~ 166 (217)
.|.=++.|| +++.+.++-+..+++|+|.-.+...
T Consensus 101 ~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 101 EFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 455566677 6788889999999999999887544
No 69
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=39.67 E-value=45 Score=24.63 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=25.8
Q ss_pred EEEEEEecC-CCCCCCeEEEEE-CCEEEEEE
Q 027900 133 EYTMRFDMP-GMTKQDVKVWVE-EKMLVVKA 161 (217)
Q Consensus 133 ~y~V~~dLP-Gv~keDV~V~Ve-d~~L~I~G 161 (217)
.|.=.|.|| +++.+.|+-.+. +++|+|..
T Consensus 54 ~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~l 84 (86)
T cd06475 54 CFTRKYTLPPGVDPTAVTSSLSPDGILTVEA 84 (86)
T ss_pred EEEEEEECCCCCCHHHcEEEECCCCeEEEEe
Confidence 678889998 799999999997 99999975
No 70
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=31.53 E-value=1.3e+02 Score=25.34 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcEE--EEeeeeeEEEEEECCCC
Q 027900 145 KQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDW--SAKSYGRYSSRIALPEN 209 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~~--~Er~~G~F~R~i~LPe~ 209 (217)
++.|+ |+++.|+|++.+..... + .=...... ....||.|+-++.+|..
T Consensus 31 ~~nv~--v~~g~L~l~~~~~~~~~-~--------------~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVE--FSDGGLALTLTNDTYGE-K--------------PYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEE--EECCeEEEEEeCCcCCC-C--------------ccccceEEECceEEeeEEEEEEEcCCC
Confidence 45554 45899999987643210 0 00001111 12469999999999863
No 71
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=29.09 E-value=49 Score=28.41 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.3
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++|+|+++++.|+|+|.+.
T Consensus 12 P~~V~V~i~~~~ItVkGpkG 31 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG 31 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc
Confidence 68899999999999998764
No 72
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=27.13 E-value=47 Score=23.41 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=18.3
Q ss_pred CCCCeEEEEECCEEEEEEEec
Q 027900 144 TKQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 144 ~keDV~V~Ved~~L~I~Ge~~ 164 (217)
+.+.|.|....+.|+|+|+.-
T Consensus 24 ~~~~I~l~t~~g~l~I~G~~L 44 (66)
T PF07873_consen 24 DDEEIRLNTKKGKLTIKGEGL 44 (66)
T ss_dssp ETTEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEeCCEEEEEECceE
Confidence 478889999999999999974
No 73
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=25.59 E-value=2e+02 Score=19.37 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.6
Q ss_pred CCEEEEEEecCC-CCCCCeEEEEECCEEEEEEEec
Q 027900 131 ENEYTMRFDMPG-MTKQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 131 ~d~y~V~~dLPG-v~keDV~V~Ved~~L~I~Ge~~ 164 (217)
+..|.+.++|++ +++++....+.++.|.|.=.+.
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKK 74 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEEC
Confidence 477888889996 4778899999999999997764
No 74
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=25.32 E-value=62 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.0
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++|+|+++++.|+|+|.+.
T Consensus 13 P~~V~V~i~~~~v~VkGp~G 32 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG 32 (190)
T ss_pred CCCCEEEEECCEEEEECCCc
Confidence 68899999999999998764
No 75
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=24.29 E-value=71 Score=26.94 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++|+|+++++.|+|+|.+.
T Consensus 12 P~~V~v~~~~~~v~vkGp~G 31 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKG 31 (178)
T ss_pred CCCCEEEEECCEEEEECCCE
Confidence 57788888888888887653
No 76
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=24.05 E-value=73 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.332 Sum_probs=15.0
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++|+|+++++.|+|+|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G 30 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKG 30 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCe
Confidence 57778888888888887653
No 77
>PRK10568 periplasmic protein; Provisional
Probab=24.03 E-value=1.1e+02 Score=26.12 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCCCCCCeEEEEECCEEEEEEEecc
Q 027900 141 PGMTKQDVKVWVEEKMLVVKAQKVP 165 (217)
Q Consensus 141 PGv~keDV~V~Ved~~L~I~Ge~~~ 165 (217)
|+++..+|+|.+.++.+++.|.-..
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCC
Confidence 5666789999999999999999863
No 78
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=23.18 E-value=74 Score=26.83 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++|+|+++++.|+|+|.+.
T Consensus 7 P~~V~v~i~~~~i~vkGp~G 26 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG 26 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe
Confidence 57777888888888887653
No 79
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.97 E-value=1.8e+02 Score=26.67 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=29.0
Q ss_pred CCCCeEEEEECCEEEEEEEeccCccccccccccCCCCCCCCCCCCCcE--------EEEeeeeeEEEEEECCCC
Q 027900 144 TKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGD--------WSAKSYGRYSSRIALPEN 209 (217)
Q Consensus 144 ~keDV~V~Ved~~L~I~Ge~~~~~~~k~e~v~~~~~~g~~e~e~~~~~--------~~Er~~G~F~R~i~LPe~ 209 (217)
+++.+ .|.++.|+|++.+.... ...|. .....||.|+-++.||..
T Consensus 39 ~~~nv--~v~~G~L~I~a~~~~~~-------------------~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~ 91 (295)
T cd02180 39 DPDAV--TTINGSLRITMDQFRNH-------------------GLNFRSGMLQSWNKLCFTGGYIEASASLPGK 91 (295)
T ss_pred cCcCe--EecCCeEEEEEEeecCC-------------------CCCEEEEEEEECCcceeeCCEEEEEEECCCC
Confidence 34554 66799999999874211 01110 123458999999999964
No 80
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=22.71 E-value=66 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=25.9
Q ss_pred eeEEecCCEEEEEEecCCCCCCCeEEEEECCEEEEEEEe
Q 027900 125 WEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQK 163 (217)
Q Consensus 125 vDI~Et~d~y~V~~dLPGv~keDV~V~Ved~~L~I~Ge~ 163 (217)
+.+... +.+.|+++.|----+.|++.+++++|.|+-++
T Consensus 13 V~l~~g-~~~~v~v~~~~~l~~~i~~~v~~g~L~I~~~~ 50 (181)
T PF10988_consen 13 VELVQG-DSPSVEVEADENLLDRIKVEVKDGTLKISYKK 50 (181)
T ss_dssp EEEEE--SS-EEEEEEEHHHHCCEEEEEETTEEEEEE-S
T ss_pred EEEEEC-CCcEEEEEEChhhcceEEEEEECCEEEEEECC
Confidence 445454 44577777775446789999999999998774
No 81
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=22.22 E-value=83 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.1
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|+.|+|+++++.++++|.+.
T Consensus 2 P~gV~v~~~~~~i~v~G~~g 21 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG 21 (77)
T ss_dssp STTCEEEEETTEEEEESSSS
T ss_pred CCcEEEEEeCcEEEEECCCE
Confidence 57899999999999998763
No 82
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=21.43 E-value=85 Score=26.53 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=14.8
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|+.|+|++.++.|+|+|...
T Consensus 12 P~~V~v~i~~~~v~vkGp~G 31 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG 31 (178)
T ss_pred CCCCEEEEECCEEEEECCCE
Confidence 46777888888888887653
No 83
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=21.18 E-value=71 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=15.6
Q ss_pred CCCCeEEEEECCEEEEEEEec
Q 027900 144 TKQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 144 ~keDV~V~Ved~~L~I~Ge~~ 164 (217)
+.+.|.|....+.|+|+|+.-
T Consensus 23 d~~~I~l~T~~G~L~I~G~~L 43 (85)
T TIGR02892 23 DDEEILLETVMGFLTIKGQEL 43 (85)
T ss_pred CCCEEEEEeCcEEEEEEccee
Confidence 567777777788888888753
No 84
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=20.68 E-value=72 Score=23.89 Aligned_cols=22 Identities=9% Similarity=0.290 Sum_probs=19.2
Q ss_pred CCCCCeEEEEECCEEEEEEEec
Q 027900 143 MTKQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 143 v~keDV~V~Ved~~L~I~Ge~~ 164 (217)
++.+.|.|....+.|+|+|+.-
T Consensus 41 y~~~~I~l~t~~G~l~I~G~~L 62 (85)
T TIGR02856 41 FSPEEVKLNSTNGKITIEGKNF 62 (85)
T ss_pred ECCCEEEEEcCceEEEEEcccE
Confidence 4688999999999999999864
No 85
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=20.58 E-value=93 Score=26.54 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.7
Q ss_pred CCCeEEEEECCEEEEEEEec
Q 027900 145 KQDVKVWVEEKMLVVKAQKV 164 (217)
Q Consensus 145 keDV~V~Ved~~L~I~Ge~~ 164 (217)
|++|+|+++++.++|+|.+.
T Consensus 13 P~~V~v~i~~~~v~VkGp~G 32 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKG 32 (180)
T ss_pred CCCCEEEEECCEEEEECCCe
Confidence 57788888888888887763
Done!