RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027900
(217 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 61.4 bits (150), Expect = 8e-13
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 21/91 (23%)
Query: 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEA 185
++ E ++ Y + D+PG K+D+KV VE+ +L + ++ E
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGER-------------------EEE 41
Query: 186 DEEEGDWSAK--SYGRYSSRIALPENVQFDK 214
+EEE ++ + SYG +S LPE+V DK
Sbjct: 42 EEEEENYLRRERSYGSFSRSFRLPEDVDPDK 72
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 60.7 bits (148), Expect = 2e-12
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 24/92 (26%)
Query: 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEA 185
+IKE ++ + ++ D+PG +++KV VE+ ++VK
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKG---------------------KHE 39
Query: 186 DEEEGD---WSAKSYGRYSSRIALPENVQFDK 214
EEE D S +SY +S + LPEN DK
Sbjct: 40 KEEEDDHGLRSERSYRSFSRKFVLPENADPDK 71
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 57.0 bits (138), Expect = 1e-10
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 17/129 (13%)
Query: 87 QMMETMERMLEEPFAYSGAWPLPLPTETGGFNSRGRTP-WEIKEGENEYTMRFDMPGMTK 145
+ M G L + TP +I+E ++EY + ++PG+ K
Sbjct: 4 EAMRNRFDFFPLLRDSPGFDRLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDK 63
Query: 146 QDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205
+D+++ VE L ++ ++ + ++ +EE ++YG +
Sbjct: 64 EDIEITVEGNTLTIRGEREEEEEE----------------EEEGYLRRERAYGEFERTFR 107
Query: 206 LPENVQFDK 214
LPE V +
Sbjct: 108 LPEKVDPEV 116
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 50.7 bits (122), Expect = 7e-09
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 24/88 (27%)
Query: 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEAD 186
+ ++E + D+PG+ K+D+KV VE+ +L + ++
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKR----------------------- 37
Query: 187 EEEGDWSAKSYGRYSSRIALPENVQFDK 214
EE + +SYG + LPE+V +K
Sbjct: 38 -EEEEERERSYGEFERSFELPEDVDPEK 64
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 48.1 bits (115), Expect = 8e-08
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 128 KEGENEYTMRFDMPGMTKQDVKVWVEE-KMLVVKAQKVPKNKKKESQVNSNNNNGNGEAD 186
KE + + D+PG+ K+DVKV VE+ ++L + + E +
Sbjct: 5 KETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGE------------------RKKEEE 46
Query: 187 EEEGDWSA--KSYGRYSSRIALPENVQFDK 214
++ DW +S GR+ R LPEN D+
Sbjct: 47 KKGDDWHRVERSSGRFVRRFRLPENADADE 76
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 42.9 bits (102), Expect = 6e-06
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGN 182
IKE ++EY + D+PG K+D+K+ ++ L + A K++ + + GN
Sbjct: 5 IKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISA-------KRDESKDEKDKKGN 53
>gnl|CDD|235481 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase
subunit F; Provisional.
Length = 409
Score = 33.3 bits (77), Expect = 0.070
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 109 PLPTETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNK 168
LPTE + R E KEG R KQD+K+ V E++ V K
Sbjct: 91 ILPTELSHISKR-----EAKEG-----WRLSCQVKVKQDMKIEVPEEIFGV--------K 132
Query: 169 KKESQVNSNNN 179
K E V SN+N
Sbjct: 133 KWECTVISNDN 143
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23.
Length = 90
Score = 28.5 bits (64), Expect = 1.00
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 128 KEGENEYTMRFDMPGMTKQDVKVWVEE----KMLVVKAQKVPKNKKKESQV 174
E N+Y D K ++K VE K+ V +P K+ Q
Sbjct: 16 LEKPNQYVFIVD-KKANKTEIKDAVEHIFGVKVEKVNTLILPGKVKRNGQY 65
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 28.3 bits (64), Expect = 1.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 127 IKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKE 171
K GEN Y + + G ++ D+++ VE L V +K + ++
Sbjct: 6 EKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEER 50
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 27.9 bits (63), Expect = 1.2
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 23/85 (27%)
Query: 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEA 185
+ + + ++ + D+ G +++KV V + LVV+ + E
Sbjct: 1 VVNDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKH--------------------EE 40
Query: 186 DEEEGDWSAKSYGRYSSRIALPENV 210
E+E + ++ + R R LPE V
Sbjct: 41 REDEHGYVSREFTR---RYQLPEGV 62
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 39 ATGESRR--DNFDHLQRANSKHHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMER 94
A G ++ N D H+P K+ + + LW R + ++ ER
Sbjct: 428 AIGHGKKAARNIDAFLGGEPYEHRP--KREIVKFDKLNLWYFTDAPRAQRPELDADER 483
>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K. Members of
this protein family are the stage V sporulation protein
K (SpoVK), a close homolog of the Rubisco expression
protein CbbX (TIGR02880) and a members of the ATPase
family associated with various cellular activities
(pfam00004). Members are strictly limited to bacterial
endospore-forming species, but are not universal in this
group and are missing from the Clostridium group
[Cellular processes, Sporulation and germination].
Length = 261
Score = 28.1 bits (63), Expect = 3.0
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 74 GLWDRFPTA-----RTVQQMMETMERMLEE---PFAYSGAWPL-----PLPTETGGFNSR 120
GL RFP + TV+++ME ERM++E W L + + S
Sbjct: 164 GLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSN 223
Query: 121 GR 122
R
Sbjct: 224 AR 225
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein
CysT. This model represents CysT, one of two
homologous, tandem permeases in the sulfate ABC
transporter system; the other is CysW (TIGR02140). The
sulfate transporter has been described in E. coli as
transporting sulfate, thiosulfate, selenate, and
selenite. Sulfate transporters may also transport
molybdate ion if a specific molybdate transporter is not
present [Transport and binding proteins, Anions].
Length = 265
Score = 28.1 bits (63), Expect = 3.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 83 RTVQQMMETMERMLEEPFAYSGAWPL 108
RTVQ ++E +E+ LEE A GA
Sbjct: 149 RTVQPVLEEIEKELEEAAASLGASRW 174
>gnl|CDD|180033 PRK05350, PRK05350, acyl carrier protein; Provisional.
Length = 82
Score = 26.5 bits (59), Expect = 4.0
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 58 HHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMERMLEE 98
H Q + K++ P + F + RTVQ +++ +ER+L+E
Sbjct: 49 HLQKLTGKKIKP-------EEFKSVRTVQDVVDAVERLLKE 82
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23.
Length = 93
Score = 26.0 bits (58), Expect = 5.9
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 130 GENEYTMRFDM-PGMTKQDVKVWVEE----KMLVVKAQKVPKNKKK 170
+N+YT FD+ G TK ++K W+E K++ V + ++P+ K++
Sbjct: 18 EKNQYT--FDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRR 61
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase.
Length = 866
Score = 27.0 bits (60), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 120 RGRTPWE-IKE---GENEYTMRFDMPGMTKQDVKVW 151
R P E +KE + EY ++F MP + K+D W
Sbjct: 327 RKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAW 362
>gnl|CDD|220372 pfam09737, Det1, De-etiolated protein 1 Det1. This is the
C-terminal conserved 400 residues of Det1 proteins of
approximately 550 amino acids. Det1 (de-etiolated-1) is
an essential negative regulator of plant light
responses, and it is a component of the Arabidopsis CDD
complex containing DDB1 and COP10 ubiquitin E2 variant.
Mammalian Det1 forms stable DDD-E2 complexes, consisting
of DDB1, DDA1 (DET1, DDB1 Associated 1), and a member of
the UBE2E group of canonical ubiquitin conjugating
enzymes and modulates Cul4A function.
Length = 407
Score = 26.6 bits (59), Expect = 10.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 19 RSRDSGCNKFKFKFDVKAQAATGESRR 45
SRDSG KF+ K V+ Q SRR
Sbjct: 349 YSRDSGLLKFRIKAGVRRQPTPSASRR 375
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.384
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,935,663
Number of extensions: 971242
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 18
Length of query: 217
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 124
Effective length of database: 6,812,680
Effective search space: 844772320
Effective search space used: 844772320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)