RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027900
(217 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 70.4 bits (173), Expect = 8e-16
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 21/126 (16%)
Query: 92 MERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVW 151
+ +PF + + + + KE + + D+PG+ K++VKV
Sbjct: 13 FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVE 72
Query: 152 VEE-KMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAK--SYGRYSSRIALPE 208
VE+ +LVV ++ E +++ W S G++ R L E
Sbjct: 73 VEDGNVLVVSGER------------------TKEKEDKNDKWHRVERSSGKFVRRFRLLE 114
Query: 209 NVQFDK 214
+ + ++
Sbjct: 115 DAKVEE 120
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 68.2 bits (167), Expect = 9e-15
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 21/131 (16%)
Query: 87 QMMETMERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQ 146
M + A P + +G P I EG+ + +PG+ K+
Sbjct: 21 TPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNKE 80
Query: 147 DVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWS---AKSYGRYSSR 203
D+ + L ++A++ + E
Sbjct: 81 DIILNAVGDTLEIRAKR------------------SPLMITESERIIYSEIPEEEEIYRT 122
Query: 204 IALPENVQFDK 214
I LP V+ +
Sbjct: 123 IKLPATVKEEN 133
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 66.1 bits (162), Expect = 2e-14
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 28/125 (22%)
Query: 92 MERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVW 151
M + +E S + GF P ++ E + D+ G K+ +K
Sbjct: 1 MYYLGKELQKRSEEL-------SRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR 53
Query: 152 VEEK-MLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALPENV 210
V + L+++A++ E E + + I LP NV
Sbjct: 54 VSGQNELIIEAER--------------------EITEPGVKYLTQRPKYVRKVIRLPYNV 93
Query: 211 QFDKD 215
D +
Sbjct: 94 AKDAE 98
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 62.9 bits (154), Expect = 2e-13
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
Query: 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEA 185
+IKE N + + D+PG+ ++V +++ +L ++ ++ E+
Sbjct: 8 DIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGER------------------KSES 49
Query: 186 DEEEGDWSAK--SYGRYSSRIALPENVQFDK 214
E +S YG + R ALP++ D
Sbjct: 50 STETERFSRIERRYGSFHRRFALPDSADADG 80
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 49.4 bits (117), Expect = 2e-07
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 31/139 (22%)
Query: 76 WDRFPTARTVQQMMETMERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEYT 135
+ + +M+ M + F + P G + K+G +
Sbjct: 63 FTAMD--NAFESVMKEMSAIQPREFHPELEYTQP-----GELDFLKDAYEVGKDGRLHFK 115
Query: 136 MRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAK 195
+ F++ +++ + ++ LVV+AQK ++
Sbjct: 116 VYFNVKNFKAEEITIKADKNKLVVRAQKS---------------------VACGDAAMSE 154
Query: 196 SYGRYSSRIALPENVQFDK 214
S GR I LP +V +
Sbjct: 155 SVGR---SIPLPPSVDRNH 170
Score = 34.4 bits (78), Expect = 0.020
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 111 PTETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKK 170
I+ E + + V K + ++ + P K
Sbjct: 189 EPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPK 248
Query: 171 ESQVNSNNNN----GNGEADEEEGDWSAKSYGRYSSRIALPENVQFDK 214
+ +V + N G +E+ + S + + PE V K
Sbjct: 249 DVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASK 296
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 44.4 bits (105), Expect = 1e-06
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 23/89 (25%)
Query: 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEA 185
++ +++ D+ + +++ V V + V A+ E
Sbjct: 5 QVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARH--------------------EE 44
Query: 186 DEEEGDWSAKSYGRYSSRIALPENVQFDK 214
+E + A+ + R R LP V
Sbjct: 45 RPDEHGFIAREFHR---RYRLPPGVDPAA 70
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 44.5 bits (105), Expect = 2e-06
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 23/89 (25%)
Query: 126 EIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEA 185
E++ +++ + D+ + +D+ V V+E + + +
Sbjct: 6 EVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKH---------------------- 43
Query: 186 DEEEGDWSAKSYGRYSSRIALPENVQFDK 214
E D + R LP NV
Sbjct: 44 -NERQDDHGYISREFHRRYRLPSNVDQSA 71
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 41.2 bits (97), Expect = 1e-05
Identities = 8/87 (9%), Positives = 27/87 (31%), Gaps = 23/87 (26%)
Query: 128 KEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADE 187
+ + + D+ ++ V ++ ++ + + A +
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKH--------------------AARQ 42
Query: 188 EEGDWSAKSYGRYSSRIALPENVQFDK 214
+E + ++ + R LP V +
Sbjct: 43 DEHGYISRCFTRK---YTLPPGVDPTQ 66
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 41.5 bits (97), Expect = 5e-05
Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 38/140 (27%)
Query: 89 METMERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPW--------------EIKEGENEY 134
+ R+ ++ F L + + P E++ ++ +
Sbjct: 17 FHSPSRLFDQFFG-EHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRF 75
Query: 135 TMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSA 194
++ D+ + +++KV V ++ V + E ++E + +
Sbjct: 76 SVNLDVKHFSPEELKVKVLGDVIEVHGKH--------------------EERQDEHGFIS 115
Query: 195 KSYGRYSSRIALPENVQFDK 214
+ + R +P +V
Sbjct: 116 REFHRK---YRIPADVDPLT 132
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 39.3 bits (92), Expect = 8e-05
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 23/87 (26%)
Query: 128 KEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADE 187
++ +++ D+ + +++KV V ++ V + E
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKH-----------------------E 38
Query: 188 EEGDWSAKSYGRYSSRIALPENVQFDK 214
E D + + +P +V
Sbjct: 39 ERQDEHGFISREFHRKYRIPADVDPLT 65
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 30.6 bits (69), Expect = 0.30
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 124 PWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKA 161
P I + +R +PG K+ VK+ + V+A
Sbjct: 297 PKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEA 334
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H
binding protein complex; HET: CSS HEC; 1.77A {Starkeya
novella} PDB: 3ocd_A*
Length = 275
Score = 30.6 bits (68), Expect = 0.36
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 50 HLQRANSKHHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMERML 96
H Q + V +PT R Q + TM+ +
Sbjct: 187 HGAAGKRIRLQALPQLDVPGKDAQLTMATWPTYRVSQSALRTMQHRM 233
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.3
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 148 VKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIA 205
++ W EE+ ++ ++ +A ++ +W R S ++
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWRE--------KAKKDLEEW----NQRQSEQVE 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.8
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 23/91 (25%)
Query: 73 VG----LWDRFPTARTVQQMMETMERMLEEPFAYSGAW-----PLPLPTETGGFNSRGRT 123
G L+ A+ V + ++ + +S P+ L GG +G+
Sbjct: 1629 QGMGMDLYKTSKAAQDV---WNRADNHFKDTYGFSILDIVINNPVNLTIHFGG--EKGK- 1682
Query: 124 PWEIKEGENEYTMRFDMPGMTKQDVKVWVEE 154
I+ EN M F+ T D K+ E+
Sbjct: 1683 --RIR--ENYSAMIFE----TIVDGKLKTEK 1705
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax
complex, thiosulfate oxidation, cysteine persulfide heme
ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP:
a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Length = 261
Score = 27.0 bits (59), Expect = 4.3
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 58 HHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMERMLEEPFAYSGAWPLPL 110
H Q A G + FP+ R + + + P +
Sbjct: 181 HEQYFDHYIRADHLSQGQINGFPSYRLKNARLNAVHDRFRGCIRDTRGVPFAV 233
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.2 bits (61), Expect = 4.8
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 2 SQALSNLIGISVPLSPRRSRDSGCNKFKFKFDVKAQAATGESRRDNFDHLQRANSKHHQP 61
S +G++ P VK + + + + + P
Sbjct: 219 SGMFFKQLGLNNAFLP----------------VKGECLSVWNDDIPLTKTLYHDHCYIVP 262
Query: 62 QSKKRV---APVPPVGLWDRFPTARTVQQMMETMERML 96
+ R+ A + P W P ++ +M+ + ML
Sbjct: 263 RKSGRLVVGATMKPGD-WSETPDLGGLESVMKKAKTML 299
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan
degradation, hydrolase; HET: XYP; 1.90A {Clostridium
thermocellum} PDB: 2wze_A* 2wys_A*
Length = 540
Score = 26.5 bits (58), Expect = 8.7
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 98 EPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEY 134
+ GR+PW G+N++
Sbjct: 326 AAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKF 362
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 8.9
Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 125 WEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNNG 181
W + + E +F + + + + K ++ + + Q + Q + N+
Sbjct: 69 WTLLSKQEEMVQKF-VEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 26.4 bits (59), Expect = 9.7
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 3/37 (8%)
Query: 117 FNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVE 153
+ T+ PG ++D W +
Sbjct: 24 VRLPDT---VVAVASRPTTLSSPHPGWAEEDPAQWWD 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.384
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,280,763
Number of extensions: 179976
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 27
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)