RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027900
         (217 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 117 FNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNS 176
            + +G  P  I EG+    +   +PG+ K+D+ +      L ++A++ P    +      
Sbjct: 5   ISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITE------ 58

Query: 177 NNNNGNGEADEEEGDWSAKSYGRYSSRIALPENVQFDK 214
                     E                I LP  V+ + 
Sbjct: 59  ---------SERIIYSEIPEEEEIYRTIKLPATVKEEN 87


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 42.1 bits (98), Expect = 7e-06
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 92  MERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVW 151
              +  +PF    +    +        +      + KE    +  + D+PG+ K++VKV 
Sbjct: 12  FADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVE 71

Query: 152 VEEKMLVVKAQKVPKNKKKESQVNSNNNNGNGEADEEEGDWSAKSYGRYSSRIALPENVQ 211
           VE+  ++V + +    + KE +  ++  +              +S G++  R  L E+ +
Sbjct: 72  VEDGNVLVVSGE----RTKEKEDKNDKWH-----------RVERSSGKFVRRFRLLEDAK 116

Query: 212 FDK 214
            ++
Sbjct: 117 VEE 119


>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
           Sv40 [TaxId: 10633]}
          Length = 348

 Score = 26.4 bits (58), Expect = 2.7
 Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 12/72 (16%)

Query: 50  HLQRANSKHHQPQS--------KKRVA-PVPPVGLWDRF---PTARTVQQMMETMERMLE 97
               + ++  +           K+ V  P P   L        T R   Q M  M   +E
Sbjct: 257 FTNTSGTQQWKGLPRYFKITLRKRSVKNPYPISFLLSDLINRRTQRVDGQPMIGMSSQVE 316

Query: 98  EPFAYSGAWPLP 109
           E   Y     LP
Sbjct: 317 EVRVYEDTEELP 328


>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
           {Aspergillus nidulans [TaxId: 162425]}
          Length = 350

 Score = 26.1 bits (56), Expect = 4.0
 Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 2/67 (2%)

Query: 70  VPPVGLWDRFPTARTVQQMMETMERMLEEPF--AYSGAWPLPLPTETGGFNSRGRTPWEI 127
           V        FP     +    + + +       A +G    P    +       R  W  
Sbjct: 266 VFGEHKAPYFPLPEFSRPAAGSPKGLGPANGKGAGAGMMQGPGGVISQRVTDEARKLWSG 325

Query: 128 KEGENEY 134
                EY
Sbjct: 326 WRDMEEY 332


>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score = 25.7 bits (55), Expect = 4.3
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 1/84 (1%)

Query: 76  WDRFPTARTVQQMMET-MERMLEEPFAYSGAWPLPLPTETGGFNSRGRTPWEIKEGENEY 134
           W R    R+VQ+ +E  + ++  EP     A          G      T    K+     
Sbjct: 20  WQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTL 79

Query: 135 TMRFDMPGMTKQDVKVWVEEKMLV 158
            +  ++PG         V +    
Sbjct: 80  GVNANLPGDIAVRWVKTVPDDFHA 103


>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 147

 Score = 25.3 bits (55), Expect = 4.3
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 121 GRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLVVKAQKVPKNKKKESQVNSNNNN 180
           G+    IKEG   Y          ++  K  V E +  V    + +  +KE++  +N   
Sbjct: 9   GKLDGFIKEGIKHYEKFL------RRFCKPEVLE-IKRVHRGSIEEIVRKETEDLTNRIL 61

Query: 181 GNG---EADEEEGDWSAKSYGRY 200
                   D+   + S++ +  +
Sbjct: 62  PGSFVMVMDKRGEEVSSEEFADF 84


>d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI
           {Pantoea stewartii subsp. stewartii [TaxId: 66271]}
          Length = 210

 Score = 25.0 bits (54), Expect = 6.7
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 81  TARTVQQMMETMERMLEEPFAYSGAWPLPLP 111
                QQ+   +      P      WPL LP
Sbjct: 179 GQDDKQQLGGDVVSRTGCPPVAVTTWPLTLP 209


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
           encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 24.7 bits (54), Expect = 9.6
 Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 19/129 (14%)

Query: 29  KFKFDVKAQAATGESRRDNFDHLQRANSKHHQPQSKKRVAPVP---PVGLWDR----FPT 81
           K  + VK +  TG+    N  H  R  +      S+K +  +     V L  R       
Sbjct: 136 KIVYTVKVEPHTGDYVAANETHSGRKTASF-TISSEKTILTMGEYGDVSLLCRVASGVDL 194

Query: 82  ARTVQQMMETMERMLEEPFAYSGAW--PLPLPTETGGFNSRGRTPWEIKEGENEYTMRFD 139
           A+TV   ++     L   +     W   L LP     +   G   W       E  + F 
Sbjct: 195 AQTVILELDKTVEHLPTAWQVHRDWFNDLALP-----WKHEGAQNWN----NAERLVEFG 245

Query: 140 MPGMTKQDV 148
            P   K DV
Sbjct: 246 APHAVKMDV 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 801,981
Number of extensions: 35873
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 10
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)