BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027901
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B5I|D Chain D, Cytokine Receptor Complex
          Length = 217

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 104 DPDKVPHNISVFEPCSWIYCGEGTCRNTSNYKHTCECKPGFNNLLNTS-YFPCFSNCTLG 162
           DP ++PH  + F+  ++    EGT  N       CECK GF  + + S Y  C  N +  
Sbjct: 6   DPPEIPH--ATFKAMAY---KEGTMLN-------CECKRGFRRIKSGSLYMLCTGNSSHS 53

Query: 163 A-----DCEKLGIRSSDSQKTSSNNETISRDDENQAISFQP 198
           +      C     R +  Q T    E   R         QP
Sbjct: 54  SWDNQCQCTSSATRQTTKQVTPQPEEQKERKTTEMQSPMQP 94


>pdb|3IU3|I Chain I, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Basiliximab In Complex With Il-2ra (Cd25)
           Ectodomain
 pdb|3IU3|J Chain J, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Basiliximab In Complex With Il-2ra (Cd25)
           Ectodomain
 pdb|3IU3|K Chain K, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Basiliximab In Complex With Il-2ra (Cd25)
           Ectodomain
 pdb|3NFP|I Chain I, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Daclizumab In Complex With Il-2ra (Cd25)
           Ectodomain
 pdb|3NFP|K Chain K, Crystal Structure Of The Fab Fragment Of Therapeutic
           Antibody Daclizumab In Complex With Il-2ra (Cd25)
           Ectodomain
          Length = 223

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 104 DPDKVPHNISVFEPCSWIYCGEGTCRNTSNYKHTCECKPGFNNLLNTS-YFPCFSNCTLG 162
           DP ++PH  + F+  ++    EGT  N       CECK GF  + + S Y  C  N +  
Sbjct: 6   DPPEIPH--ATFKAMAY---KEGTMLN-------CECKRGFRRIKSGSLYMLCTGNSSHS 53

Query: 163 A-----DCEKLGIRSSDSQKTSSNNETISRDDENQAISFQP 198
           +      C     R++  Q T    E   R         QP
Sbjct: 54  SWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQP 94


>pdb|1Z92|B Chain B, Structure Of Interleukin-2 With Its Alpha Receptor
          Length = 219

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 104 DPDKVPHNISVFEPCSWIYCGEGTCRNTSNYKHTCECKPGFNNLLNTS-YFPCFSNCTLG 162
           DP ++PH  + F+  ++    EGT  N       CECK GF  + + S Y  C  N +  
Sbjct: 8   DPPEIPH--ATFKAMAY---KEGTMLN-------CECKRGFRRIKSGSLYMLCTGNSSHS 55

Query: 163 A-----DCEKLGIRSSDSQKTSSNNETISRDDENQAISFQP 198
           +      C     R++  Q T    E   R         QP
Sbjct: 56  SWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQP 96


>pdb|2ERJ|A Chain A, Crystal Structure Of The Heterotrimeric Interleukin-2
           Receptor In Complex With Interleukin-2
 pdb|2ERJ|E Chain E, Crystal Structure Of The Heterotrimeric Interleukin-2
           Receptor In Complex With Interleukin-2
          Length = 225

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 18/101 (17%)

Query: 104 DPDKVPHNISVFEPCSWIYCGEGTCRNTSNYKHTCECKPGFNNLLNTS-YFPCFSNCTLG 162
           DP ++PH  + F+  ++    EGT  N       CECK GF  + + S Y  C  + +  
Sbjct: 11  DPPEIPH--ATFKAMAY---KEGTMLN-------CECKRGFRRIKSGSLYMLCTGSSSHS 58

Query: 163 A-----DCEKLGIRSSDSQKTSSNNETISRDDENQAISFQP 198
           +      C     RS+  Q T    E   R         QP
Sbjct: 59  SWDNQCQCTSSATRSTTKQVTPQPEEQKERKTTEMQSPMQP 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,514,339
Number of Sequences: 62578
Number of extensions: 275989
Number of successful extensions: 487
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 21
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)