Query 027901
Match_columns 217
No_of_seqs 152 out of 397
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1219 Uncharacterized conser 99.3 2.1E-12 4.5E-17 137.1 6.7 104 37-148 3864-3975(4289)
2 KOG4289 Cadherin EGF LAG seven 99.2 1.8E-11 4E-16 126.6 3.8 102 33-173 1175-1301(2531)
3 KOG4289 Cadherin EGF LAG seven 98.4 2.2E-07 4.7E-12 97.3 4.0 67 38-143 1240-1308(2531)
4 KOG1214 Nidogen and related ba 98.2 1.6E-06 3.6E-11 87.4 6.5 108 35-148 732-860 (1289)
5 KOG1219 Uncharacterized conser 98.1 5.8E-06 1.2E-10 89.9 6.1 83 84-168 3866-3959(4289)
6 PF00008 EGF: EGF-like domain 98.0 2E-06 4.4E-11 53.4 0.6 31 40-72 1-32 (32)
7 PF00008 EGF: EGF-like domain 98.0 4.9E-06 1.1E-10 51.7 2.1 30 118-147 1-31 (32)
8 KOG1225 Teneurin-1 and related 97.9 4E-05 8.6E-10 74.6 7.9 93 37-152 244-343 (525)
9 KOG1217 Fibrillins and related 97.9 9.3E-05 2E-09 67.1 9.5 124 38-165 170-330 (487)
10 KOG4260 Uncharacterized conser 97.7 3.5E-05 7.6E-10 69.8 4.8 104 43-147 150-270 (350)
11 PF07645 EGF_CA: Calcium-bindi 97.7 2.1E-05 4.5E-10 51.4 2.5 31 114-145 1-34 (42)
12 KOG1217 Fibrillins and related 97.6 0.0003 6.4E-09 63.8 9.2 104 36-147 270-389 (487)
13 smart00179 EGF_CA Calcium-bind 97.6 6.6E-05 1.4E-09 46.6 3.4 34 37-73 2-38 (39)
14 smart00179 EGF_CA Calcium-bind 97.5 0.00011 2.5E-09 45.5 3.6 32 115-147 2-36 (39)
15 cd00054 EGF_CA Calcium-binding 97.3 0.00028 6.1E-09 42.9 3.3 34 37-73 2-37 (38)
16 smart00181 EGF Epidermal growt 97.2 0.00044 9.5E-09 42.3 3.2 32 39-73 1-34 (35)
17 cd00054 EGF_CA Calcium-binding 97.2 0.00051 1.1E-08 41.8 3.4 32 115-147 2-35 (38)
18 cd00053 EGF Epidermal growth f 96.9 0.0013 2.7E-08 39.3 3.2 31 40-73 2-35 (36)
19 smart00181 EGF Epidermal growt 96.8 0.0014 3.1E-08 40.0 3.3 30 117-147 1-31 (35)
20 cd00053 EGF Epidermal growth f 96.7 0.0021 4.5E-08 38.3 3.4 27 120-147 5-32 (36)
21 KOG1214 Nidogen and related ba 96.5 0.0098 2.1E-07 61.0 8.0 122 40-168 697-844 (1289)
22 PF07645 EGF_CA: Calcium-bindi 96.5 0.0012 2.5E-08 43.0 1.0 30 37-69 2-34 (42)
23 KOG1225 Teneurin-1 and related 96.4 0.011 2.3E-07 58.0 7.7 92 58-166 232-325 (525)
24 PF07974 EGF_2: EGF-like domai 96.3 0.004 8.7E-08 38.9 2.7 26 43-73 6-32 (32)
25 KOG1226 Integrin beta subunit 96.2 0.011 2.3E-07 59.9 6.3 23 45-74 557-580 (783)
26 KOG1226 Integrin beta subunit 96.1 0.014 3E-07 59.1 6.7 90 47-148 472-578 (783)
27 PF12661 hEGF: Human growth fa 96.0 0.0016 3.5E-08 33.1 -0.1 13 61-73 1-13 (13)
28 PF12947 EGF_3: EGF domain; I 96.0 0.0055 1.2E-07 39.2 2.1 25 122-147 7-32 (36)
29 PF07974 EGF_2: EGF-like domai 94.7 0.04 8.6E-07 34.4 2.9 24 121-147 6-30 (32)
30 PHA03099 epidermal growth fact 93.4 0.14 3E-06 41.9 4.6 48 28-76 28-83 (139)
31 PF12662 cEGF: Complement Clr- 92.9 0.073 1.6E-06 31.3 1.6 13 135-147 1-13 (24)
32 PF06247 Plasmod_Pvs28: Plasmo 92.8 0.033 7.3E-07 48.1 0.2 71 44-148 7-82 (197)
33 PHA02887 EGF-like protein; Pro 92.1 0.11 2.4E-06 41.9 2.3 30 45-75 94-123 (126)
34 PF14670 FXa_inhibition: Coagu 91.9 0.11 2.3E-06 33.3 1.6 21 127-148 11-31 (36)
35 KOG4260 Uncharacterized conser 91.2 0.11 2.3E-06 47.6 1.5 80 36-162 235-317 (350)
36 cd01475 vWA_Matrilin VWA_Matri 90.8 0.32 6.8E-06 41.6 4.0 35 112-148 184-220 (224)
37 PF06247 Plasmod_Pvs28: Plasmo 89.8 0.088 1.9E-06 45.5 -0.3 73 39-147 89-162 (197)
38 PHA02887 EGF-like protein; Pro 89.6 0.39 8.5E-06 38.7 3.3 36 114-149 82-121 (126)
39 PF12947 EGF_3: EGF domain; I 89.2 0.11 2.5E-06 33.0 -0.0 25 44-71 7-32 (36)
40 KOG3514 Neurexin III-alpha [Si 86.7 0.42 9.2E-06 50.6 2.3 38 37-77 623-662 (1591)
41 smart00051 DSL delta serrate l 85.2 0.71 1.5E-05 32.9 2.2 13 61-73 51-63 (63)
42 PHA03099 epidermal growth fact 85.1 1.1 2.4E-05 36.7 3.6 28 121-148 51-79 (139)
43 PF07172 GRP: Glycine rich pro 84.0 0.76 1.6E-05 35.4 2.1 18 1-19 1-18 (95)
44 PF14670 FXa_inhibition: Coagu 83.7 0.42 9.1E-06 30.5 0.4 21 49-72 11-31 (36)
45 KOG1836 Extracellular matrix g 83.2 2.4 5.1E-05 47.2 6.1 90 60-149 695-811 (1705)
46 cd01475 vWA_Matrilin VWA_Matri 82.1 0.95 2.1E-05 38.6 2.2 42 28-72 172-220 (224)
47 KOG3516 Neurexin IV [Signal tr 81.0 1.4 3E-05 47.2 3.2 47 28-77 946-994 (1306)
48 PF13980 UPF0370: Uncharacteri 78.9 1.8 3.8E-05 31.0 2.2 14 202-215 7-20 (63)
49 PF12946 EGF_MSP1_1: MSP1 EGF 78.6 1.4 3E-05 28.6 1.5 30 118-147 2-32 (37)
50 PF00954 S_locus_glycop: S-loc 73.7 2.9 6.3E-05 32.0 2.5 31 114-146 76-108 (110)
51 PF04863 EGF_alliinase: Alliin 68.2 1.3 2.7E-05 31.2 -0.6 35 42-76 16-52 (56)
52 KOG3516 Neurexin IV [Signal tr 67.4 4.7 0.0001 43.3 3.0 39 112-151 542-582 (1306)
53 PF00954 S_locus_glycop: S-loc 63.4 7.2 0.00016 29.8 2.7 31 37-71 77-109 (110)
54 KOG1836 Extracellular matrix g 59.9 22 0.00048 39.9 6.6 37 40-77 777-815 (1705)
55 KOG3512 Netrin, axonal chemotr 59.8 19 0.0004 35.6 5.3 25 48-74 285-309 (592)
56 PRK13664 hypothetical protein; 56.4 10 0.00022 27.0 2.2 14 202-215 7-21 (62)
57 PF12955 DUF3844: Domain of un 55.9 9.1 0.0002 30.1 2.1 33 38-70 6-43 (103)
58 KOG3607 Meltrins, fertilins an 55.2 27 0.00058 35.9 5.8 21 123-147 632-653 (716)
59 KOG1218 Proteins containing Ca 55.0 47 0.001 29.0 6.8 33 136-168 162-197 (316)
60 cd00055 EGF_Lam Laminin-type e 50.2 9.5 0.00021 25.3 1.2 16 59-74 18-33 (50)
61 KOG0994 Extracellular matrix g 49.8 30 0.00065 37.8 5.3 38 37-75 903-949 (1758)
62 PF00053 Laminin_EGF: Laminin 49.6 7.4 0.00016 25.5 0.6 22 48-74 11-32 (49)
63 KOG3509 Basement membrane-spec 48.6 29 0.00062 36.9 4.9 36 36-74 405-441 (964)
64 smart00180 EGF_Lam Laminin-typ 48.0 11 0.00023 24.8 1.2 15 60-74 18-32 (46)
65 cd01328 FSL_SPARC Follistatin- 44.7 25 0.00054 26.6 2.9 27 117-143 1-28 (86)
66 KOG0994 Extracellular matrix g 39.0 96 0.0021 34.2 7.0 89 60-148 830-946 (1758)
67 PF01414 DSL: Delta serrate li 33.9 13 0.00029 26.3 -0.0 11 63-73 53-63 (63)
68 KOG3607 Meltrins, fertilins an 30.3 33 0.00072 35.3 2.1 16 59-74 641-656 (716)
69 PF09064 Tme5_EGF_like: Thromb 29.4 41 0.00089 21.4 1.6 13 59-71 17-29 (34)
70 PF01683 EB: EB module; Inter 29.1 74 0.0016 20.9 3.0 20 123-147 28-48 (52)
71 KOG1388 Attractin and platelet 27.3 46 0.001 29.5 2.2 40 26-71 42-88 (217)
72 PLN03148 Blue copper-like prot 25.9 65 0.0014 27.3 2.8 20 153-175 100-120 (167)
73 smart00274 FOLN Follistatin-N- 25.3 86 0.0019 18.5 2.4 22 117-138 1-23 (26)
74 PF09289 FOLN: Follistatin/Ost 22.6 88 0.0019 18.0 2.0 21 118-138 1-22 (22)
No 1
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=99.31 E-value=2.1e-12 Score=137.14 Aligned_cols=104 Identities=22% Similarity=0.584 Sum_probs=82.0
Q ss_pred CCCCcCCCCCC-CeeecCCCCCCcccccCCCCCccCCCCCCCCCCCCCCccCC-CCcCCCC--ccccCCCCCCCC-CCCC
Q 027901 37 DKMCEKVDCGK-GKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIP-DCTLHYD--SCHTAPPPDPDK-VPHN 111 (217)
Q Consensus 37 ~d~C~~~pC~~-GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~-~Ct~~~g--sC~~~~~~~~~g-~g~n 111 (217)
.+.|+.+||+| |+|.... .++|.|+|.+-|+|.+|+.+...|.++||-.+ .|...++ .|.| |.| +|+.
T Consensus 3864 ~d~C~~npCqhgG~C~~~~--~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC-----~~gyTG~~ 3936 (4289)
T KOG1219|consen 3864 TDPCNDNPCQHGGTCISQP--KGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNC-----PNGYTGKR 3936 (4289)
T ss_pred ccccccCcccCCCEecCCC--CCceEEeCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeC-----CCCccCce
Confidence 38999999998 6999874 57899999999999999977667777777644 5654321 3554 556 8888
Q ss_pred CC-C-CCCCCCCccCC-CeEeeCCCCceeeecCCCCccCC
Q 027901 112 IS-V-FEPCSWIYCGE-GTCRNTSNYKHTCECKPGFNNLL 148 (217)
Q Consensus 112 ~~-~-~DpC~~~~Cg~-GtC~~~~~~sY~C~C~~Gy~n~~ 148 (217)
|+ . +++|..++|++ |+|++..+ +|+|.|.+||.|..
T Consensus 3937 Ce~~Gi~eCs~n~C~~gg~C~n~~g-sf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3937 CEARGISECSKNVCGTGGQCINIPG-SFHCNCTPGILGRT 3975 (4289)
T ss_pred eecccccccccccccCCceeeccCC-ceEeccChhHhccc
Confidence 54 3 78999999994 69998855 89999999999875
No 2
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=99.15 E-value=1.8e-11 Score=126.57 Aligned_cols=102 Identities=30% Similarity=0.620 Sum_probs=82.9
Q ss_pred CCCCCCCCcCCCCCC-CeeecCC-------------------CCCCcccccCCCCCccCCCCCCCCCCCCCCccCCCCcC
Q 027901 33 SPFFDKMCEKVDCGK-GKCRADM-------------------THPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTL 92 (217)
Q Consensus 33 ~~~~~d~C~~~pC~~-GtC~~~~-------------------~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~ 92 (217)
-|++|+.|...||.| -.|+... +..++++|+|+|||||..|+++
T Consensus 1175 lpfdDniClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTe---------------- 1238 (2531)
T KOG4289|consen 1175 LPFDDNICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETE---------------- 1238 (2531)
T ss_pred eeccCchhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccch----------------
Confidence 378999999999987 4676321 1246899999999999988754
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCccC-CCeEeeCCCCceeeecCCCCccCCCCC---CCCCc-cCCCCCCCccC
Q 027901 93 HYDSCHTAPPPDPDKVPHNISVFEPCSWIYCG-EGTCRNTSNYKHTCECKPGFNNLLNTS---YFPCF-SNCTLGADCEK 167 (217)
Q Consensus 93 ~~gsC~~~~~~~~~g~g~n~~~~DpC~~~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~~n~t---~~pC~-~~C~~G~dC~~ 167 (217)
+|.|.+.||+ +|+|+.- .++|+|+|++||+|....- ..-|+ .-|.+|+.|.+
T Consensus 1239 ----------------------iDlCYs~pC~nng~C~sr-EggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~ 1295 (2531)
T KOG4289|consen 1239 ----------------------IDLCYSGPCGNNGRCRSR-EGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVN 1295 (2531)
T ss_pred ----------------------hHhhhcCCCCCCCceEEe-cCceeEEecCCccccceeeecccCccccceecCCCEEee
Confidence 4889999999 6899986 4599999999999996432 58999 79999999999
Q ss_pred CCccCC
Q 027901 168 LGIRSS 173 (217)
Q Consensus 168 lgi~~~ 173 (217)
+++...
T Consensus 1296 ~~nggf 1301 (2531)
T KOG4289|consen 1296 LLNGGF 1301 (2531)
T ss_pred cCCCce
Confidence 977653
No 3
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.39 E-value=2.2e-07 Score=97.30 Aligned_cols=67 Identities=31% Similarity=0.717 Sum_probs=52.2
Q ss_pred CCCcCCCCC-CCeeecCCCCCCcccccCCCCCccCCCCCCCCCCCCCCccCCCCcCCCCccccCCCCCCCCCCCCCCCCC
Q 027901 38 KMCEKVDCG-KGKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPDPDKVPHNISVFE 116 (217)
Q Consensus 38 d~C~~~pC~-~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~~~g~g~n~~~~D 116 (217)
|.|-+.||+ ||+|+.. .++|+|+|.|||+|.+|+.+. . .+.
T Consensus 1240 DlCYs~pC~nng~C~sr---EggYtCeCrpg~tGehCEvs~---~------------agr-------------------- 1281 (2531)
T KOG4289|consen 1240 DLCYSGPCGNNGRCRSR---EGGYTCECRPGFTGEHCEVSA---R------------AGR-------------------- 1281 (2531)
T ss_pred HhhhcCCCCCCCceEEe---cCceeEEecCCccccceeeec---c------------cCc--------------------
Confidence 457788998 5899987 578999999999999988542 1 122
Q ss_pred CCCCCccCC-CeEeeCCCCceeeecCCC
Q 027901 117 PCSWIYCGE-GTCRNTSNYKHTCECKPG 143 (217)
Q Consensus 117 pC~~~~Cg~-GtC~~~~~~sY~C~C~~G 143 (217)
|....|.+ |+|++...++++|.|+.|
T Consensus 1282 -CvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1282 -CVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred -cccceecCCCEEeecCCCceeccCCCc
Confidence 33456874 699998777999999998
No 4
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.25 E-value=1.6e-06 Score=87.36 Aligned_cols=108 Identities=26% Similarity=0.516 Sum_probs=72.4
Q ss_pred CCCCCCcCC--CCC-CCeeecCCCCCCcccccCCCCCc----cCCCCCCCCCCCCCCccCC--CCcCCC-----------
Q 027901 35 FFDKMCEKV--DCG-KGKCRADMTHPFNFRCECEPGWK----KTKDNDEDNDHSFLPCIIP--DCTLHY----------- 94 (217)
Q Consensus 35 ~~~d~C~~~--pC~-~GtC~~~~~~~~~Y~C~C~pGwt----G~~c~~~~~~~~~~PC~~~--~Ct~~~----------- 94 (217)
++.++|++- .|+ +-.|++. +++|+|+|..||+ +-+|-...+--+.+||+.. +|.++.
T Consensus 732 ~d~~eca~~~~~CGp~s~Cin~---pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~ 808 (1289)
T KOG1214|consen 732 VDENECATGFHRCGPNSVCINL---PGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGST 808 (1289)
T ss_pred CChhhhccCCCCCCCCceeecC---CCceeEEEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecCCce
Confidence 344556544 377 4679976 6889999999884 3445422223455677733 676552
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCccC-CCeEeeCCCCceeeecCCCCccCC
Q 027901 95 DSCHTAPPPDPDKVPHNISVFEPCSWIYCG-EGTCRNTSNYKHTCECKPGFNNLL 148 (217)
Q Consensus 95 gsC~~~~~~~~~g~g~n~~~~DpC~~~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~~ 148 (217)
.+|++.++..- .|.-+.+.|+|..+.|. +.+|+++.+ +|.|+|++||+|..
T Consensus 809 y~C~CLPGfsG--DG~~c~dvDeC~psrChp~A~Cyntpg-sfsC~C~pGy~GDG 860 (1289)
T KOG1214|consen 809 YSCACLPGFSG--DGHQCTDVDECSPSRCHPAATCYNTPG-SFSCRCQPGYYGDG 860 (1289)
T ss_pred EEEeecCCccC--CccccccccccCccccCCCceEecCCC-cceeecccCccCCC
Confidence 14555444421 23335567999999999 679999974 99999999999983
No 5
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.06 E-value=5.8e-06 Score=89.90 Aligned_cols=83 Identities=24% Similarity=0.514 Sum_probs=61.0
Q ss_pred CccCCCCcCCCCccccCC-CCC----CCC-CCCCC-CCCCCCCCCccC-CCeEeeCCCCceeeecCCCCccCCCCC--CC
Q 027901 84 PCIIPDCTLHYDSCHTAP-PPD----PDK-VPHNI-SVFEPCSWIYCG-EGTCRNTSNYKHTCECKPGFNNLLNTS--YF 153 (217)
Q Consensus 84 PC~~~~Ct~~~gsC~~~~-~~~----~~g-~g~n~-~~~DpC~~~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~~n~t--~~ 153 (217)
||.-+.|+++. +|..++ +.| +.- +|++| ....||..+||. +|+|+.. .++|.|.|+.||+|..... ..
T Consensus 3866 ~C~~npCqhgG-~C~~~~~ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~-~n~f~CnC~~gyTG~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3866 PCNDNPCQHGG-TCISQPKGGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPF-YNGFLCNCPNGYTGKRCEARGIS 3943 (4289)
T ss_pred ccccCcccCCC-EecCCCCCceEEeCcccccCcccccccccccCCCCCCCCEEEec-CCCeeEeCCCCccCceeeccccc
Confidence 34444444333 565443 222 444 88885 478999999999 5799987 4599999999999996544 47
Q ss_pred CCc-cCCCCCCCccCC
Q 027901 154 PCF-SNCTLGADCEKL 168 (217)
Q Consensus 154 pC~-~~C~~G~dC~~l 168 (217)
+|- .+|..|+.|.+.
T Consensus 3944 eCs~n~C~~gg~C~n~ 3959 (4289)
T KOG1219|consen 3944 ECSKNVCGTGGQCINI 3959 (4289)
T ss_pred ccccccccCCceeecc
Confidence 898 799999999887
No 6
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.97 E-value=2e-06 Score=53.39 Aligned_cols=31 Identities=29% Similarity=0.795 Sum_probs=26.4
Q ss_pred CcCCCCCC-CeeecCCCCCCcccccCCCCCccCC
Q 027901 40 CEKVDCGK-GKCRADMTHPFNFRCECEPGWKKTK 72 (217)
Q Consensus 40 C~~~pC~~-GtC~~~~~~~~~Y~C~C~pGwtG~~ 72 (217)
|..+||.| |+|++.. ..+|+|+|.+||+|.+
T Consensus 1 C~~~~C~n~g~C~~~~--~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLP--GGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTTSSTTTEEEEEES--TSEEEEEEBTTEESTT
T ss_pred CCCCcCCCCeEEEeCC--CCCEEeECCCCCccCC
Confidence 67889997 7999884 3789999999999964
No 7
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.95 E-value=4.9e-06 Score=51.65 Aligned_cols=30 Identities=40% Similarity=0.834 Sum_probs=25.5
Q ss_pred CCCCccCC-CeEeeCCCCceeeecCCCCccC
Q 027901 118 CSWIYCGE-GTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 118 C~~~~Cg~-GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
|..++|.+ |+|+.....+|+|+|++||+|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 56679995 6999886469999999999986
No 8
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=97.88 E-value=4e-05 Score=74.62 Aligned_cols=93 Identities=22% Similarity=0.546 Sum_probs=59.6
Q ss_pred CCCCcCCCCCC-----CeeecCCCCCCcccccCCCCCccCCCCCCCCCCCCCCccCCCCcCCCCccccCCCCCCCC-CCC
Q 027901 37 DKMCEKVDCGK-----GKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPDPDK-VPH 110 (217)
Q Consensus 37 ~d~C~~~pC~~-----GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~~~g-~g~ 110 (217)
+..|...-|.+ |.|++. +|.|++||+|.+|+.. .|... |...-+-.+. .|.+ ++| +|+
T Consensus 244 g~~c~~~~C~~~c~~~g~c~~G-------~CIC~~Gf~G~dC~e~--~Cp~~-cs~~g~~~~g-~CiC-----~~g~~G~ 307 (525)
T KOG1225|consen 244 GPLCSTIYCPGGCTGRGQCVEG-------RCICPPGFTGDDCDEL--VCPVD-CSGGGVCVDG-ECIC-----NPGYSGK 307 (525)
T ss_pred CCccccccCCCCCcccceEeCC-------eEeCCCCCcCCCCCcc--cCCcc-cCCCceecCC-Eeec-----CCCcccc
Confidence 44565555654 478764 6999999999998743 24443 4432221222 6666 445 677
Q ss_pred CCCCCCCCCCCccC-CCeEeeCCCCceeeecCCCCccCCCCCC
Q 027901 111 NISVFEPCSWIYCG-EGTCRNTSNYKHTCECKPGFNNLLNTSY 152 (217)
Q Consensus 111 n~~~~DpC~~~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~~n~t~ 152 (217)
.++... |. ..|. +|.|++ + +|+|.+||+|.+..+.
T Consensus 308 dCs~~~-cp-adC~g~G~Ci~--G---~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 308 DCSIRR-CP-ADCSGHGKCID--G---ECLCDEGYTGELCIQR 343 (525)
T ss_pred cccccc-CC-ccCCCCCcccC--C---ceEeCCCCcCCccccc
Confidence 765322 43 7787 689993 2 5999999999976555
No 9
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.86 E-value=9.3e-05 Score=67.05 Aligned_cols=124 Identities=23% Similarity=0.572 Sum_probs=76.4
Q ss_pred CCCc--CCCCCC-CeeecCCCCCCcccccCCCCCccCCCCCCC--CCCC------------CCCccCC--CCcCCCCccc
Q 027901 38 KMCE--KVDCGK-GKCRADMTHPFNFRCECEPGWKKTKDNDED--NDHS------------FLPCIIP--DCTLHYDSCH 98 (217)
Q Consensus 38 d~C~--~~pC~~-GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~--~~~~------------~~PC~~~--~Ct~~~gsC~ 98 (217)
+.|. ..+|.+ ++|++. ..+|.|.|.+||++..++... ..+. ...|.+. .|..+.+.|.
T Consensus 170 ~~C~~~~~~c~~~~~C~~~---~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~ 246 (487)
T KOG1217|consen 170 DECIQYSSPCQNGGTCVNT---GGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVSIVECASGDGTCV 246 (487)
T ss_pred cccccCCCCcCCCcccccC---CCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCcccccccccCCCCccc
Confidence 5676 335885 689977 456999999999999887430 0000 1112211 1111102444
Q ss_pred cCCCCC----CCC-CCCC---CCCCCCCCCCc-cCC-CeEeeCCCCceeeecCCCCccCCC--C-CCCCC----c-cCCC
Q 027901 99 TAPPPD----PDK-VPHN---ISVFEPCSWIY-CGE-GTCRNTSNYKHTCECKPGFNNLLN--T-SYFPC----F-SNCT 160 (217)
Q Consensus 99 ~~~~~~----~~g-~g~n---~~~~DpC~~~~-Cg~-GtC~~~~~~sY~C~C~~Gy~n~~n--~-t~~pC----~-~~C~ 160 (217)
+..+.+ ++| .+.. ..+++.|.... |.+ |+|+...+ .|.|.|++||++... . ....| . ++|.
T Consensus 247 ~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~-~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~ 325 (487)
T KOG1217|consen 247 NTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPG-SYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCA 325 (487)
T ss_pred ccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCC-cceeeCCCCCCCCCCccccccccccccccCCcCC
Confidence 433332 344 3333 34679998875 884 79998754 699999999999975 2 22566 2 5688
Q ss_pred CCCCc
Q 027901 161 LGADC 165 (217)
Q Consensus 161 ~G~dC 165 (217)
+|..|
T Consensus 326 ~g~~C 330 (487)
T KOG1217|consen 326 NGGTC 330 (487)
T ss_pred CCccc
Confidence 88888
No 10
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=3.5e-05 Score=69.78 Aligned_cols=104 Identities=20% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCC-CCCeeecCCCCCCcccccCCCCCccCCCCCCCC-CCCCC-CccCCCCcCCC----CccccCCCCC----CCC-CCC
Q 027901 43 VDC-GKGKCRADMTHPFNFRCECEPGWKKTKDNDEDN-DHSFL-PCIIPDCTLHY----DSCHTAPPPD----PDK-VPH 110 (217)
Q Consensus 43 ~pC-~~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~-~~~~~-PC~~~~Ct~~~----gsC~~~~~~~----~~g-~g~ 110 (217)
.|| ++|.|.-.....++-.|+|++||+|..|..-.. ..... -=.+-.|+-=. +.|....... ..| .-.
T Consensus 150 r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~ld 229 (350)
T KOG4260|consen 150 RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKLD 229 (350)
T ss_pred CCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhcccceec
Confidence 368 489999665456788999999999999852110 00000 00011122111 1222111110 222 112
Q ss_pred C--CCCCCCCCC--CccCC-CeEeeCCCCceeeecCCCCccC
Q 027901 111 N--ISVFEPCSW--IYCGE-GTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 111 n--~~~~DpC~~--~~Cg~-GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
. +.++|+|.. .+|+. --|+|+.+ +|+|++++||...
T Consensus 230 e~gCvDvnEC~~ep~~c~~~qfCvNteG-Sf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 230 EEGCVDVNECQNEPAPCKAHQFCVNTEG-SFKCEDKEGYKKG 270 (350)
T ss_pred ccccccHHHHhcCCCCCChhheeecCCC-ceEecccccccCC
Confidence 2 568899964 56884 58999854 9999999999973
No 11
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.75 E-value=2.1e-05 Score=51.39 Aligned_cols=31 Identities=35% Similarity=0.873 Sum_probs=25.6
Q ss_pred CCCCCCCC--ccC-CCeEeeCCCCceeeecCCCCc
Q 027901 114 VFEPCSWI--YCG-EGTCRNTSNYKHTCECKPGFN 145 (217)
Q Consensus 114 ~~DpC~~~--~Cg-~GtC~~~~~~sY~C~C~~Gy~ 145 (217)
++|+|... .|. +++|+++.+ +|+|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~G-sy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEG-SYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETT-EEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCC-CEEeeCCCCcE
Confidence 36788664 598 579999965 99999999999
No 12
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.63 E-value=0.0003 Score=63.76 Aligned_cols=104 Identities=23% Similarity=0.474 Sum_probs=68.2
Q ss_pred CCCCCcCCC-CCC-CeeecCCCCCCcccccCCCCCccCCC-C-CCCCCC----CCCCccCC-CCcC-C---CCccccCCC
Q 027901 36 FDKMCEKVD-CGK-GKCRADMTHPFNFRCECEPGWKKTKD-N-DEDNDH----SFLPCIIP-DCTL-H---YDSCHTAPP 102 (217)
Q Consensus 36 ~~d~C~~~p-C~~-GtC~~~~~~~~~Y~C~C~pGwtG~~c-~-~~~~~~----~~~PC~~~-~Ct~-~---~gsC~~~~~ 102 (217)
+.+.|.... |.+ |+|++. .+.|.|.|.+||+|..+ . .+..++ ...+|..+ .|.. + ...|..
T Consensus 270 ~~~~C~~~~~c~~~~~C~~~---~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c--- 343 (487)
T KOG1217|consen 270 DVDSCALIASCPNGGTCVNV---PGSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCAC--- 343 (487)
T ss_pred eccccCCCCccCCCCeeecC---CCcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCC---
Confidence 467898875 875 799987 34599999999999998 1 111123 22234433 3411 1 002333
Q ss_pred CCCCC-CCCCCCCC-CCCCCCccC-CCeEeeCCCCceeeecCCCCccC
Q 027901 103 PDPDK-VPHNISVF-EPCSWIYCG-EGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 103 ~~~~g-~g~n~~~~-DpC~~~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
..+ .|+.++.. |+|...+|. +++|++...++|+|.|+.+|.+.
T Consensus 344 --~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~ 389 (487)
T KOG1217|consen 344 --GPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGK 389 (487)
T ss_pred --CCCCCCCccccCCccccCCccccCCEeccCCCCCeEecCCCccccC
Confidence 334 66776666 599998877 57999832348999999999984
No 13
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.63 E-value=6.6e-05 Score=46.57 Aligned_cols=34 Identities=29% Similarity=0.736 Sum_probs=28.3
Q ss_pred CCCCcC-CCCCC-CeeecCCCCCCcccccCCCCCc-cCCC
Q 027901 37 DKMCEK-VDCGK-GKCRADMTHPFNFRCECEPGWK-KTKD 73 (217)
Q Consensus 37 ~d~C~~-~pC~~-GtC~~~~~~~~~Y~C~C~pGwt-G~~c 73 (217)
.++|.. .+|.+ |+|++. .++|.|.|.+||+ |.+|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~---~g~~~C~C~~g~~~g~~C 38 (39)
T smart00179 2 IDECASGNPCQNGGTCVNT---VGSYRCECPPGYTDGRNC 38 (39)
T ss_pred cccCcCCCCcCCCCEeECC---CCCeEeECCCCCccCCcC
Confidence 477887 79986 599977 5689999999999 8765
No 14
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.53 E-value=0.00011 Score=45.49 Aligned_cols=32 Identities=38% Similarity=0.874 Sum_probs=26.3
Q ss_pred CCCCCC-CccCC-CeEeeCCCCceeeecCCCCc-cC
Q 027901 115 FEPCSW-IYCGE-GTCRNTSNYKHTCECKPGFN-NL 147 (217)
Q Consensus 115 ~DpC~~-~~Cg~-GtC~~~~~~sY~C~C~~Gy~-n~ 147 (217)
+|+|.. .+|.+ |+|+++.+ +|+|.|++||. |.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g-~~~C~C~~g~~~g~ 36 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVG-SYRCECPPGYTDGR 36 (39)
T ss_pred cccCcCCCCcCCCCEeECCCC-CeEeECCCCCccCC
Confidence 578877 78984 69998855 89999999998 54
No 15
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.31 E-value=0.00028 Score=42.91 Aligned_cols=34 Identities=26% Similarity=0.703 Sum_probs=28.0
Q ss_pred CCCCcC-CCCCC-CeeecCCCCCCcccccCCCCCccCCC
Q 027901 37 DKMCEK-VDCGK-GKCRADMTHPFNFRCECEPGWKKTKD 73 (217)
Q Consensus 37 ~d~C~~-~pC~~-GtC~~~~~~~~~Y~C~C~pGwtG~~c 73 (217)
.++|.. .+|.+ |+|++. .++|.|.|.+||+|.+|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~---~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 2 IDECASGNPCQNGGTCVNT---VGSYRCSCPPGYTGRNC 37 (38)
T ss_pred cccCCCCCCcCCCCEeECC---CCCeEeECCCCCcCCcC
Confidence 467887 78985 699976 56799999999999776
No 16
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.18 E-value=0.00044 Score=42.31 Aligned_cols=32 Identities=28% Similarity=0.850 Sum_probs=25.9
Q ss_pred CCcC-CCCCCCeeecCCCCCCcccccCCCCCcc-CCC
Q 027901 39 MCEK-VDCGKGKCRADMTHPFNFRCECEPGWKK-TKD 73 (217)
Q Consensus 39 ~C~~-~pC~~GtC~~~~~~~~~Y~C~C~pGwtG-~~c 73 (217)
+|.. .+|.+++|++. .++|+|.|.+||+| ..|
T Consensus 1 ~C~~~~~C~~~~C~~~---~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 1 ECASGGPCSNGTCINT---PGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCcCCCCCCEEECC---CCCeEeECCCCCccCCcc
Confidence 3566 68988899976 57899999999999 654
No 17
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.17 E-value=0.00051 Score=41.77 Aligned_cols=32 Identities=34% Similarity=0.821 Sum_probs=26.3
Q ss_pred CCCCCC-CccC-CCeEeeCCCCceeeecCCCCccC
Q 027901 115 FEPCSW-IYCG-EGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 115 ~DpC~~-~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
+|+|.. .+|. +|+|++..+ +|+|.|++||.|.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~-~~~C~C~~g~~g~ 35 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVG-SYRCSCPPGYTGR 35 (38)
T ss_pred cccCCCCCCcCCCCEeECCCC-CeEeECCCCCcCC
Confidence 478877 7898 569998754 8999999999984
No 18
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.87 E-value=0.0013 Score=39.27 Aligned_cols=31 Identities=32% Similarity=0.915 Sum_probs=24.9
Q ss_pred Cc-CCCCCC-CeeecCCCCCCcccccCCCCCccC-CC
Q 027901 40 CE-KVDCGK-GKCRADMTHPFNFRCECEPGWKKT-KD 73 (217)
Q Consensus 40 C~-~~pC~~-GtC~~~~~~~~~Y~C~C~pGwtG~-~c 73 (217)
|. ..+|.+ ++|++. ..+|+|+|..||.|. .|
T Consensus 2 C~~~~~C~~~~~C~~~---~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 2 CAASNPCSNGGTCVNT---PGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCCCCCCEEecC---CCCeEeECCCCCcccCCc
Confidence 55 667875 899987 467999999999997 44
No 19
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.85 E-value=0.0014 Score=39.99 Aligned_cols=30 Identities=40% Similarity=0.809 Sum_probs=23.5
Q ss_pred CCCC-CccCCCeEeeCCCCceeeecCCCCccC
Q 027901 117 PCSW-IYCGEGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 117 pC~~-~~Cg~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
+|.. .+|.+++|++. .++|+|.|++||.+.
T Consensus 1 ~C~~~~~C~~~~C~~~-~~~~~C~C~~g~~g~ 31 (35)
T smart00181 1 ECASGGPCSNGTCINT-PGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCcCCCCCCEEECC-CCCeEeECCCCCccC
Confidence 3555 57876699987 459999999999983
No 20
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.74 E-value=0.0021 Score=38.29 Aligned_cols=27 Identities=37% Similarity=0.786 Sum_probs=22.2
Q ss_pred CCccCC-CeEeeCCCCceeeecCCCCccC
Q 027901 120 WIYCGE-GTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 120 ~~~Cg~-GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
..+|.+ +.|++..+ +|+|.|++||.+.
T Consensus 5 ~~~C~~~~~C~~~~~-~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPG-SYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCC-CeEeECCCCCccc
Confidence 567874 79998754 8999999999886
No 21
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=96.47 E-value=0.0098 Score=60.98 Aligned_cols=122 Identities=24% Similarity=0.486 Sum_probs=72.8
Q ss_pred CcCCCCCCC-eeecCCCCCCcccccCCCCCcc--CCCCCCCCCCCCCCccCCCCcCCCCccccCCCCC----CC-----C
Q 027901 40 CEKVDCGKG-KCRADMTHPFNFRCECEPGWKK--TKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPD----PD-----K 107 (217)
Q Consensus 40 C~~~pC~~G-tC~~~~~~~~~Y~C~C~pGwtG--~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~----~~-----g 107 (217)
|.+.-|.-+ .|.++. --.|+|+|..||.| .+|.+. +++..- .++|-.+. -|.+.++.+ .. +
T Consensus 697 ~gsh~cdt~a~C~pg~--~~~~tcecs~g~~gdgr~c~d~-~eca~~---~~~CGp~s-~Cin~pg~~rceC~~gy~F~d 769 (1289)
T KOG1214|consen 697 DGSHMCDTTARCHPGT--GVDYTCECSSGYQGDGRNCVDE-NECATG---FHRCGPNS-VCINLPGSYRCECRSGYEFAD 769 (1289)
T ss_pred ecCcccCCCccccCCC--CcceEEEEeeccCCCCCCCCCh-hhhccC---CCCCCCCc-eeecCCCceeEEEeecceecc
Confidence 445556644 588764 24699999999975 455432 244431 22344333 344333333 01 1
Q ss_pred CCCCCC------CCCCCCC--CccC-CC--eEeeCCCCceeeecCCCCccCC--CCCCCCCc-cCCCCCCCccCC
Q 027901 108 VPHNIS------VFEPCSW--IYCG-EG--TCRNTSNYKHTCECKPGFNNLL--NTSYFPCF-SNCTLGADCEKL 168 (217)
Q Consensus 108 ~g~n~~------~~DpC~~--~~Cg-~G--tC~~~~~~sY~C~C~~Gy~n~~--n~t~~pC~-~~C~~G~dC~~l 168 (217)
.+.++. ..++|.. +.|. +| .|+.+.+.+|+|.|-+||+|.. +...++|. +-|.-.+.|-+.
T Consensus 770 d~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDeC~psrChp~A~Cynt 844 (1289)
T KOG1214|consen 770 DRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNT 844 (1289)
T ss_pred CCcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccccccCccccCCCceEecC
Confidence 222321 3467753 4676 55 6788877789999999999885 45568887 667666666543
No 22
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.46 E-value=0.0012 Score=43.01 Aligned_cols=30 Identities=27% Similarity=0.835 Sum_probs=25.5
Q ss_pred CCCCcCC--CCC-CCeeecCCCCCCcccccCCCCCc
Q 027901 37 DKMCEKV--DCG-KGKCRADMTHPFNFRCECEPGWK 69 (217)
Q Consensus 37 ~d~C~~~--pC~-~GtC~~~~~~~~~Y~C~C~pGwt 69 (217)
.|+|+.. .|. +++|++. .++|+|.|.+||+
T Consensus 2 idEC~~~~~~C~~~~~C~N~---~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNT---EGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEE---TTEEEEEESTTEE
T ss_pred ccccCCCCCcCCCCCEEEcC---CCCEEeeCCCCcE
Confidence 4788865 587 5899988 6899999999999
No 23
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=96.42 E-value=0.011 Score=57.98 Aligned_cols=92 Identities=24% Similarity=0.513 Sum_probs=56.7
Q ss_pred CcccccCCCCCccCCCCCCCCCCCCCCccCCCCcCCCCccccCCCCCCCC-CCCCCCCCCCCCCCccCC-CeEeeCCCCc
Q 027901 58 FNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPDPDK-VPHNISVFEPCSWIYCGE-GTCRNTSNYK 135 (217)
Q Consensus 58 ~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~~~g-~g~n~~~~DpC~~~~Cg~-GtC~~~~~~s 135 (217)
+.++|+|..||+|.+|... -|. ++|+.. +.|.+..---++| +|.+++. -.|-.. |.+ |.|++ +
T Consensus 232 ~~~ic~c~~~~~g~~c~~~-------~C~-~~c~~~-g~c~~G~CIC~~Gf~G~dC~e-~~Cp~~-cs~~g~~~~----g 296 (525)
T KOG1225|consen 232 FDGICECPEGYFGPLCSTI-------YCP-GGCTGR-GQCVEGRCICPPGFTGDDCDE-LVCPVD-CSGGGVCVD----G 296 (525)
T ss_pred cCceeecCCceeCCccccc-------cCC-CCCccc-ceEeCCeEeCCCCCcCCCCCc-ccCCcc-cCCCceecC----C
Confidence 3457999999999987632 122 234432 2333322222566 7888653 346545 774 46654 3
Q ss_pred eeeecCCCCccCCCCCCCCCccCCCCCCCcc
Q 027901 136 HTCECKPGFNNLLNTSYFPCFSNCTLGADCE 166 (217)
Q Consensus 136 Y~C~C~~Gy~n~~n~t~~pC~~~C~~G~dC~ 166 (217)
+|.|++||.|. .+++-.|..+|...+.|.
T Consensus 297 -~CiC~~g~~G~-dCs~~~cpadC~g~G~Ci 325 (525)
T KOG1225|consen 297 -ECICNPGYSGK-DCSIRRCPADCSGHGKCI 325 (525)
T ss_pred -EeecCCCcccc-ccccccCCccCCCCCccc
Confidence 79999999999 455444666666666665
No 24
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.30 E-value=0.004 Score=38.87 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=21.0
Q ss_pred CCCC-CCeeecCCCCCCcccccCCCCCccCCC
Q 027901 43 VDCG-KGKCRADMTHPFNFRCECEPGWKKTKD 73 (217)
Q Consensus 43 ~pC~-~GtC~~~~~~~~~Y~C~C~pGwtG~~c 73 (217)
..|. +|+|+.. ..+|+|++||+|..|
T Consensus 6 ~~C~~~G~C~~~-----~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSP-----CGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCC-----CCEEECCCCCcCCCC
Confidence 3585 7999954 379999999999875
No 25
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=96.16 E-value=0.011 Score=59.93 Aligned_cols=23 Identities=48% Similarity=1.393 Sum_probs=16.6
Q ss_pred CC-CCeeecCCCCCCcccccCCCCCccCCCC
Q 027901 45 CG-KGKCRADMTHPFNFRCECEPGWKKTKDN 74 (217)
Q Consensus 45 C~-~GtC~~~~~~~~~Y~C~C~pGwtG~~c~ 74 (217)
|+ ||+|.-. +|.|++||+|..|+
T Consensus 557 C~g~G~C~CG-------~CvC~~GwtG~~C~ 580 (783)
T KOG1226|consen 557 CGGHGRCECG-------RCVCNPGWTGSACN 580 (783)
T ss_pred cCCCCeEeCC-------cEEcCCCCccCCCC
Confidence 54 5777643 68888888888876
No 26
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=96.08 E-value=0.014 Score=59.10 Aligned_cols=90 Identities=23% Similarity=0.520 Sum_probs=45.5
Q ss_pred CCeeecCCCCCCcccccCCCCCccCCCCCCCCCCCC----CCcc----CCCCcCCC----CccccCCCCCCCCCCCCCC-
Q 027901 47 KGKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSF----LPCI----IPDCTLHY----DSCHTAPPPDPDKVPHNIS- 113 (217)
Q Consensus 47 ~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~----~PC~----~~~Ct~~~----gsC~~~~~~~~~g~g~n~~- 113 (217)
||+++-+ .|+|++||.|++|+-..++... .-|. .+.|+... |.|.+.+...+.-+|+.++
T Consensus 472 ~G~~~CG-------~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCEC 544 (783)
T KOG1226|consen 472 NGTFVCG-------QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCEC 544 (783)
T ss_pred CCcEEec-------ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeeec
Confidence 5665543 7999999999999833322332 1233 11344222 2344443333211455532
Q ss_pred CCCCCCCC---ccC-CCeEeeCCCCceeeecCCCCccCC
Q 027901 114 VFEPCSWI---YCG-EGTCRNTSNYKHTCECKPGFNNLL 148 (217)
Q Consensus 114 ~~DpC~~~---~Cg-~GtC~~~~~~sY~C~C~~Gy~n~~ 148 (217)
+.--|..+ -|+ +|+|.=. +|.|++||+|..
T Consensus 545 DnfsC~r~~g~lC~g~G~C~CG-----~CvC~~GwtG~~ 578 (783)
T KOG1226|consen 545 DNFSCERHKGVLCGGHGRCECG-----RCVCNPGWTGSA 578 (783)
T ss_pred cCcccccccCcccCCCCeEeCC-----cEEcCCCCccCC
Confidence 11223222 365 4666532 477777777764
No 27
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.02 E-value=0.0016 Score=33.06 Aligned_cols=13 Identities=38% Similarity=1.257 Sum_probs=10.5
Q ss_pred cccCCCCCccCCC
Q 027901 61 RCECEPGWKKTKD 73 (217)
Q Consensus 61 ~C~C~pGwtG~~c 73 (217)
+|.|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999875
No 28
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.95 E-value=0.0055 Score=39.17 Aligned_cols=25 Identities=44% Similarity=0.953 Sum_probs=19.0
Q ss_pred ccC-CCeEeeCCCCceeeecCCCCccC
Q 027901 122 YCG-EGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 122 ~Cg-~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
.|. +.+|+++.+ +|+|+|++||.|.
T Consensus 7 ~C~~nA~C~~~~~-~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNTGG-SYTCTCKPGYEGD 32 (36)
T ss_dssp GS-TTCEEEE-TT-SEEEEE-CEEECC
T ss_pred CCCCCcEeecCCC-CEEeECCCCCccC
Confidence 476 579999865 9999999999987
No 29
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=94.67 E-value=0.04 Score=34.36 Aligned_cols=24 Identities=29% Similarity=0.782 Sum_probs=19.9
Q ss_pred CccC-CCeEeeCCCCceeeecCCCCccC
Q 027901 121 IYCG-EGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 121 ~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
..|. +|+|++. ..+|.|.+||+|.
T Consensus 6 ~~C~~~G~C~~~---~g~C~C~~g~~G~ 30 (32)
T PF07974_consen 6 NICSGHGTCVSP---CGRCVCDSGYTGP 30 (32)
T ss_pred CccCCCCEEeCC---CCEEECCCCCcCC
Confidence 4587 6999975 5789999999986
No 30
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=93.45 E-value=0.14 Score=41.88 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=34.6
Q ss_pred ccccCCCCCCCC-----CcCC---CCCCCeeecCCCCCCcccccCCCCCccCCCCCC
Q 027901 28 LAPALSPFFDKM-----CEKV---DCGKGKCRADMTHPFNFRCECEPGWKKTKDNDE 76 (217)
Q Consensus 28 ~s~~~~~~~~d~-----C~~~---pC~~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~ 76 (217)
-||-+++...|. |... -|-||+|.--.+ ...+.|.|..||+|.+|+..
T Consensus 28 ~~~~~~~~~~~~~~i~~Cp~ey~~YClHG~C~yI~d-l~~~~CrC~~GYtGeRCEh~ 83 (139)
T PHA03099 28 TSPEITNATTDIPAIRLCGPEGDGYCLHGDCIHARD-IDGMYCRCSHGYTGIRCQHV 83 (139)
T ss_pred cChhhccCccCCcccccCChhhCCEeECCEEEeecc-CCCceeECCCCcccccccce
Confidence 667666655443 6533 388899985432 45799999999999999854
No 31
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=92.87 E-value=0.073 Score=31.32 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=11.5
Q ss_pred ceeeecCCCCccC
Q 027901 135 KHTCECKPGFNNL 147 (217)
Q Consensus 135 sY~C~C~~Gy~n~ 147 (217)
+|+|.|++||+..
T Consensus 1 sy~C~C~~Gy~l~ 13 (24)
T PF12662_consen 1 SYTCSCPPGYQLS 13 (24)
T ss_pred CEEeeCCCCCcCC
Confidence 6999999999954
No 32
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=92.79 E-value=0.033 Score=48.07 Aligned_cols=71 Identities=25% Similarity=0.549 Sum_probs=42.4
Q ss_pred CCCCCeeecCCCCCCcccccCCCCCccCCCCCCCCCCCCCCccCCCCcCCCCccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 027901 44 DCGKGKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPDPDKVPHNISVFEPCSWIYC 123 (217)
Q Consensus 44 pC~~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~~~g~g~n~~~~DpC~~~~C 123 (217)
.|.||.-...+ +.|.|.|.+||.-.+ + ++|+... .|... .+ ..-+|
T Consensus 7 ~CKNG~LiQMS---NHfEC~Cnegfvl~~---E-----------ntCE~kv-~C~~~---------e~-------~~K~C 52 (197)
T PF06247_consen 7 ICKNGYLIQMS---NHFECKCNEGFVLKN---E-----------NTCEEKV-ECDKL---------EN-------VNKPC 52 (197)
T ss_dssp --BTEEEEEES---SEEEEEESTTEEEEE---T-----------TEEEE-----SG----------GG-------TTSEE
T ss_pred cccCCEEEEcc---CceEEEcCCCcEEcc---c-----------cccccce-ecCcc---------cc-------cCccc
Confidence 57889888875 459999999998763 1 1222111 12110 00 12468
Q ss_pred CC-CeEeeCCC----CceeeecCCCCccCC
Q 027901 124 GE-GTCRNTSN----YKHTCECKPGFNNLL 148 (217)
Q Consensus 124 g~-GtC~~~~~----~sY~C~C~~Gy~n~~ 148 (217)
++ ++|++... ..|+|.|.+||....
T Consensus 53 gdya~C~~~~~~~~~~~~~C~C~~gY~~~~ 82 (197)
T PF06247_consen 53 GDYAKCINQANKGEERAYKCDCINGYILKQ 82 (197)
T ss_dssp ETTEEEEE-SSTTSSTSEEEEE-TTEEESS
T ss_pred cchhhhhcCCCcccceeEEEecccCceeeC
Confidence 87 79998653 469999999998763
No 33
>PHA02887 EGF-like protein; Provisional
Probab=92.13 E-value=0.11 Score=41.86 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=24.7
Q ss_pred CCCCeeecCCCCCCcccccCCCCCccCCCCC
Q 027901 45 CGKGKCRADMTHPFNFRCECEPGWKKTKDND 75 (217)
Q Consensus 45 C~~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~ 75 (217)
|-||+|.--.+ ...+.|.|+.||+|.+|+.
T Consensus 94 CiHG~C~yI~d-L~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 94 CINGECMNIID-LDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred eeCCEEEcccc-CCCceeECCCCcccCCCCc
Confidence 88999995532 4568999999999999973
No 34
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=91.85 E-value=0.11 Score=33.30 Aligned_cols=21 Identities=33% Similarity=0.784 Sum_probs=15.9
Q ss_pred eEeeCCCCceeeecCCCCccCC
Q 027901 127 TCRNTSNYKHTCECKPGFNNLL 148 (217)
Q Consensus 127 tC~~~~~~sY~C~C~~Gy~n~~ 148 (217)
.|+++.+ +|+|.|++||+...
T Consensus 11 ~C~~~~g-~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 11 ICVNTPG-SYRCSCPPGYKLAE 31 (36)
T ss_dssp EEEEETT-SEEEE-STTEEE-T
T ss_pred CCccCCC-ceEeECCCCCEECc
Confidence 5888855 89999999998753
No 35
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=0.11 Score=47.60 Aligned_cols=80 Identities=23% Similarity=0.450 Sum_probs=52.1
Q ss_pred CCCCCcC--CCCC-CCeeecCCCCCCcccccCCCCCccCCCCCCCCCCCCCCccCCCCcCCCCccccCCCCCCCCCCCCC
Q 027901 36 FDKMCEK--VDCG-KGKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPDPDKVPHNI 112 (217)
Q Consensus 36 ~~d~C~~--~pC~-~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~~~g~g~n~ 112 (217)
+.|+|.. +||. +--|+++ .++|+|++.+||++. .| +|++-.+.|.-
T Consensus 235 DvnEC~~ep~~c~~~qfCvNt---eGSf~C~dk~Gy~~g---~d------------~C~~~~d~~~~------------- 283 (350)
T KOG4260|consen 235 DVNECQNEPAPCKAHQFCVNT---EGSFKCEDKEGYKKG---VD------------ECQFCADVCAS------------- 283 (350)
T ss_pred cHHHHhcCCCCCChhheeecC---CCceEecccccccCC---hH------------Hhhhhhhhccc-------------
Confidence 5677864 4676 4679987 688999999999983 22 23321111210
Q ss_pred CCCCCCCCCccCCCeEeeCCCCceeeecCCCCccCCCCCCCCCccCCCCC
Q 027901 113 SVFEPCSWIYCGEGTCRNTSNYKHTCECKPGFNNLLNTSYFPCFSNCTLG 162 (217)
Q Consensus 113 ~~~DpC~~~~Cg~GtC~~~~~~sY~C~C~~Gy~n~~n~t~~pC~~~C~~G 162 (217)
.++.|.+.++ +|+|.|..|+. .....|+..++.-
T Consensus 284 -----------kn~~c~ni~~-~~r~v~f~~~~----~~~g~cV~~~~p~ 317 (350)
T KOG4260|consen 284 -----------KNRPCMNIDG-QYRCVCFSGLI----IIEGFCVWHGSPV 317 (350)
T ss_pred -----------CCCCcccCCc-cEEEEecccce----eeeeeeeccCCch
Confidence 1345878765 99999988875 3357788766654
No 36
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=90.82 E-value=0.32 Score=41.56 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=25.0
Q ss_pred CCCCCCCCCC--ccCCCeEeeCCCCceeeecCCCCccCC
Q 027901 112 ISVFEPCSWI--YCGEGTCRNTSNYKHTCECKPGFNNLL 148 (217)
Q Consensus 112 ~~~~DpC~~~--~Cg~GtC~~~~~~sY~C~C~~Gy~n~~ 148 (217)
+.+.|+|... .|. ..|.++.+ +|.|.|++||+...
T Consensus 184 C~~~~~C~~~~~~c~-~~C~~~~g-~~~c~c~~g~~~~~ 220 (224)
T cd01475 184 CVVPDLCATLSHVCQ-QVCISTPG-SYLCACTEGYALLE 220 (224)
T ss_pred CcCchhhcCCCCCcc-ceEEcCCC-CEEeECCCCccCCC
Confidence 4456777533 454 36998855 99999999998653
No 37
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=89.75 E-value=0.088 Score=45.54 Aligned_cols=73 Identities=34% Similarity=0.735 Sum_probs=36.8
Q ss_pred CCcCCCCCCCeeecCCCCCCcccccCCCCCccCCCCCCCCCCCCCCccCCCCcCCCCccccCCCCCCCCCCCCCCCCCCC
Q 027901 39 MCEKVDCGKGKCRADMTHPFNFRCECEPGWKKTKDNDEDNDHSFLPCIIPDCTLHYDSCHTAPPPDPDKVPHNISVFEPC 118 (217)
Q Consensus 39 ~C~~~pC~~GtC~~~~~~~~~Y~C~C~pGwtG~~c~~~~~~~~~~PC~~~~Ct~~~gsC~~~~~~~~~g~g~n~~~~DpC 118 (217)
.|....|++|.|+.....+....|.|+-|.. .. + ...|+-... -+|
T Consensus 89 ~C~~~~Cg~GKCI~d~~~~~~~~CSC~IGkV-~~---d----------n~kCtk~G~--------------------T~C 134 (197)
T PF06247_consen 89 KCNNKDCGSGKCILDPDNPNNPTCSCNIGKV-PD---D----------NKKCTKTGE--------------------TKC 134 (197)
T ss_dssp GGSS---TTEEEEEEEGGGSEEEEEE-TEEE-TT---T----------TTESEEEE------------------------
T ss_pred hcCceecCCCeEEecCCCCCCceeEeeeceE-ec---c----------CCcccCCCc--------------------cce
Confidence 3556667777777543334456777777776 11 1 134543221 133
Q ss_pred CCCccCCC-eEeeCCCCceeeecCCCCccC
Q 027901 119 SWIYCGEG-TCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 119 ~~~~Cg~G-tC~~~~~~sY~C~C~~Gy~n~ 147 (217)
. .-|... .|.+..+ -|+|.|++||.+.
T Consensus 135 ~-LKCk~nE~CK~~~~-~Y~C~~~~~~~~~ 162 (197)
T PF06247_consen 135 S-LKCKENEECKLVDG-YYKCVCKEGFPGD 162 (197)
T ss_dssp -----TTTEEEEEETT-EEEEEE-TT-EEE
T ss_pred e-eecCCCcceeeeCc-EEEeecCCCCCCC
Confidence 3 356543 8998854 8999999999875
No 38
>PHA02887 EGF-like protein; Provisional
Probab=89.55 E-value=0.39 Score=38.72 Aligned_cols=36 Identities=28% Similarity=0.655 Sum_probs=27.3
Q ss_pred CCCCCCC---CccCCCeEeeCC-CCceeeecCCCCccCCC
Q 027901 114 VFEPCSW---IYCGEGTCRNTS-NYKHTCECKPGFNNLLN 149 (217)
Q Consensus 114 ~~DpC~~---~~Cg~GtC~~~~-~~sY~C~C~~Gy~n~~n 149 (217)
.++||.. ++|-+|+|.--. ...+.|.|++||+|...
T Consensus 82 hf~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GYtG~RC 121 (126)
T PHA02887 82 FFEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRC 121 (126)
T ss_pred CccccChHhhCEeeCCEEEccccCCCceeECCCCcccCCC
Confidence 3567754 579999997532 34799999999999853
No 39
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=89.18 E-value=0.11 Score=33.05 Aligned_cols=25 Identities=24% Similarity=0.854 Sum_probs=17.5
Q ss_pred CCC-CCeeecCCCCCCcccccCCCCCccC
Q 027901 44 DCG-KGKCRADMTHPFNFRCECEPGWKKT 71 (217)
Q Consensus 44 pC~-~GtC~~~~~~~~~Y~C~C~pGwtG~ 71 (217)
.|. +-+|++. ..+|+|+|.+||+|.
T Consensus 7 ~C~~nA~C~~~---~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNT---GGSYTCTCKPGYEGD 32 (36)
T ss_dssp GS-TTCEEEE----TTSEEEEE-CEEECC
T ss_pred CCCCCcEeecC---CCCEEeECCCCCccC
Confidence 354 4689887 458999999999984
No 40
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=86.69 E-value=0.42 Score=50.60 Aligned_cols=38 Identities=32% Similarity=0.762 Sum_probs=31.9
Q ss_pred CCCCcCCCCCC-CeeecCCCCCCcccccCC-CCCccCCCCCCC
Q 027901 37 DKMCEKVDCGK-GKCRADMTHPFNFRCECE-PGWKKTKDNDED 77 (217)
Q Consensus 37 ~d~C~~~pC~~-GtC~~~~~~~~~Y~C~C~-pGwtG~~c~~~~ 77 (217)
..+|+++||+| |+|.+. -+.|.|+|. .||.|..|+-+.
T Consensus 623 ~~~C~~nPC~N~g~C~eg---wNrfiCDCs~T~~~G~~CerE~ 662 (1591)
T KOG3514|consen 623 EKICESNPCQNGGKCSEG---WNRFICDCSGTGFEGRTCEREA 662 (1591)
T ss_pred ccccCCCcccCCCCcccc---ccccccccccCcccCcccccee
Confidence 45899999997 799988 467999996 899999998543
No 41
>smart00051 DSL delta serrate ligand.
Probab=85.24 E-value=0.71 Score=32.88 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=10.2
Q ss_pred cccCCCCCccCCC
Q 027901 61 RCECEPGWKKTKD 73 (217)
Q Consensus 61 ~C~C~pGwtG~~c 73 (217)
.|.|.+||+|.+|
T Consensus 51 ~~~C~~Gw~G~~C 63 (63)
T smart00051 51 NKGCLEGWMGPYC 63 (63)
T ss_pred CEecCCCCcCCCC
Confidence 3559999999865
No 42
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=85.14 E-value=1.1 Score=36.67 Aligned_cols=28 Identities=25% Similarity=0.649 Sum_probs=22.5
Q ss_pred CccCCCeEeeC-CCCceeeecCCCCccCC
Q 027901 121 IYCGEGTCRNT-SNYKHTCECKPGFNNLL 148 (217)
Q Consensus 121 ~~Cg~GtC~~~-~~~sY~C~C~~Gy~n~~ 148 (217)
++|.+|+|.-- +...|.|+|..||+|..
T Consensus 51 ~YClHG~C~yI~dl~~~~CrC~~GYtGeR 79 (139)
T PHA03099 51 GYCLHGDCIHARDIDGMYCRCSHGYTGIR 79 (139)
T ss_pred CEeECCEEEeeccCCCceeECCCCccccc
Confidence 67999999753 23489999999999873
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.99 E-value=0.76 Score=35.40 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=12.3
Q ss_pred CCccchhHHHHHHHHHhhh
Q 027901 1 MAAFKPMAFLALLVVLLPT 19 (217)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (217)
|| +|.+.||+|||.++.+
T Consensus 1 Ma-SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLL 18 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHH
Confidence 88 8888777777633333
No 44
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=83.71 E-value=0.42 Score=30.51 Aligned_cols=21 Identities=38% Similarity=1.016 Sum_probs=16.0
Q ss_pred eeecCCCCCCcccccCCCCCccCC
Q 027901 49 KCRADMTHPFNFRCECEPGWKKTK 72 (217)
Q Consensus 49 tC~~~~~~~~~Y~C~C~pGwtG~~ 72 (217)
.|++. +++|+|.|.+||+-..
T Consensus 11 ~C~~~---~g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 11 ICVNT---PGSYRCSCPPGYKLAE 31 (36)
T ss_dssp EEEEE---TTSEEEE-STTEEE-T
T ss_pred CCccC---CCceEeECCCCCEECc
Confidence 68877 6789999999998754
No 45
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=83.16 E-value=2.4 Score=47.20 Aligned_cols=90 Identities=22% Similarity=0.413 Sum_probs=53.0
Q ss_pred ccccCCCCCccCCCCCCC--------CCCCCCCccC-------CCCcCCCCccccCCCCC-------CCC-CCCCC-CCC
Q 027901 60 FRCECEPGWKKTKDNDED--------NDHSFLPCII-------PDCTLHYDSCHTAPPPD-------PDK-VPHNI-SVF 115 (217)
Q Consensus 60 Y~C~C~pGwtG~~c~~~~--------~~~~~~PC~~-------~~Ct~~~gsC~~~~~~~-------~~g-~g~n~-~~~ 115 (217)
-.|.|..||+|..|+.=. ..-++.||+. ..|+...|.|.+...-+ ..| +|-.. ...
T Consensus 695 e~c~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~ 774 (1705)
T KOG1836|consen 695 EQCTCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTS 774 (1705)
T ss_pred hhccCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCCCccccCCC
Confidence 349999999999986211 1223345441 23444444554322221 334 33332 223
Q ss_pred CCCCCCccC-CCeEeeCC-CCceeee-cCCCCccCCC
Q 027901 116 EPCSWIYCG-EGTCRNTS-NYKHTCE-CKPGFNNLLN 149 (217)
Q Consensus 116 DpC~~~~Cg-~GtC~~~~-~~sY~C~-C~~Gy~n~~n 149 (217)
+.|..-+|- +|.|..+. ..++.|+ |++||+|+..
T Consensus 775 ~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rC 811 (1705)
T KOG1836|consen 775 GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRC 811 (1705)
T ss_pred CCCccCCCCCChhhcCcCcccceecCCCCCCCccccc
Confidence 339888887 45887664 4579999 9999999863
No 46
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=82.12 E-value=0.95 Score=38.60 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=29.2
Q ss_pred ccccCCCCCCCCCc-CCCCCC------CeeecCCCCCCcccccCCCCCccCC
Q 027901 28 LAPALSPFFDKMCE-KVDCGK------GKCRADMTHPFNFRCECEPGWKKTK 72 (217)
Q Consensus 28 ~s~~~~~~~~d~C~-~~pC~~------GtC~~~~~~~~~Y~C~C~pGwtG~~ 72 (217)
|..++..+....|. ..+|.. .+|... .++|.|.|.+||+...
T Consensus 172 l~~~~~~l~~~~C~~~~~C~~~~~~c~~~C~~~---~g~~~c~c~~g~~~~~ 220 (224)
T cd01475 172 IEELTKKFQGKICVVPDLCATLSHVCQQVCIST---PGSYLCACTEGYALLE 220 (224)
T ss_pred HHHHhhhcccccCcCchhhcCCCCCccceEEcC---CCCEEeECCCCccCCC
Confidence 56666666777785 334532 257765 6789999999998753
No 47
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=80.96 E-value=1.4 Score=47.17 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=38.9
Q ss_pred ccccCCCCCCCCCcCCCCCC-CeeecCCCCCCcccccCC-CCCccCCCCCCC
Q 027901 28 LAPALSPFFDKMCEKVDCGK-GKCRADMTHPFNFRCECE-PGWKKTKDNDED 77 (217)
Q Consensus 28 ~s~~~~~~~~d~C~~~pC~~-GtC~~~~~~~~~Y~C~C~-pGwtG~~c~~~~ 77 (217)
..+.++|--...|.+.+|.| |+|++. -.+|+|+|. .-|+|+.|..|+
T Consensus 946 ~~~gv~~GC~GhCss~~C~NGG~Cver---y~gytCDCs~Tay~Gp~Cs~ei 994 (1306)
T KOG3516|consen 946 GTAGVSPGCEGHCSSYPCLNGGHCVER---YDGYTCDCSRTAYDGPFCSKEI 994 (1306)
T ss_pred cCCcccCCCccccccccccCCCEEEEe---cCceeeccccCcCCCCcccccc
Confidence 55677787788899999997 699988 458999996 789999997553
No 48
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=78.87 E-value=1.8 Score=31.01 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHh
Q 027901 202 HWMSILIMSMVIAI 215 (217)
Q Consensus 202 ~~~~~~~~~~~~~~ 215 (217)
+|||||++.+||++
T Consensus 7 YWWiiLl~lvG~i~ 20 (63)
T PF13980_consen 7 YWWIILLILVGMII 20 (63)
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999999875
No 49
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=78.65 E-value=1.4 Score=28.58 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=19.6
Q ss_pred CCCCccC-CCeEeeCCCCceeeecCCCCccC
Q 027901 118 CSWIYCG-EGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 118 C~~~~Cg-~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
|....|- +..|.+...+++.|+|..||.-.
T Consensus 2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~~ 32 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSEECRCLLGYKKV 32 (37)
T ss_dssp -SSS---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred ccCccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence 3344554 56799887679999999999854
No 50
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=73.73 E-value=2.9 Score=31.96 Aligned_cols=31 Identities=32% Similarity=0.920 Sum_probs=24.0
Q ss_pred CCCCCCC-CccC-CCeEeeCCCCceeeecCCCCcc
Q 027901 114 VFEPCSW-IYCG-EGTCRNTSNYKHTCECKPGFNN 146 (217)
Q Consensus 114 ~~DpC~~-~~Cg-~GtC~~~~~~sY~C~C~~Gy~n 146 (217)
..|+|+. ..|| .|.|..+ ....|+|.+||.=
T Consensus 76 p~d~Cd~y~~CG~~g~C~~~--~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 76 PKDQCDVYGFCGPNGICNSN--NSPKCSCLPGFEP 108 (110)
T ss_pred cccCCCCccccCCccEeCCC--CCCceECCCCcCC
Confidence 4589975 6799 6999654 3678999999963
No 51
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=68.21 E-value=1.3 Score=31.24 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=17.5
Q ss_pred CCCC-CCCeee-cCCCCCCcccccCCCCCccCCCCCC
Q 027901 42 KVDC-GKGKCR-ADMTHPFNFRCECEPGWKKTKDNDE 76 (217)
Q Consensus 42 ~~pC-~~GtC~-~~~~~~~~Y~C~C~pGwtG~~c~~~ 76 (217)
.++| +||+.. +.....+.-.|+|+.-|+|++|.+.
T Consensus 16 ai~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 16 AISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp TS--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE
T ss_pred cCCcCCCCeeeeccccccCCccccccCCcCCCCcccC
Confidence 3467 478766 3221234579999999999998743
No 52
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=67.40 E-value=4.7 Score=43.35 Aligned_cols=39 Identities=18% Similarity=0.514 Sum_probs=31.4
Q ss_pred CCCCCCCCCCccCC-CeEeeCCCCceeeecC-CCCccCCCCC
Q 027901 112 ISVFEPCSWIYCGE-GTCRNTSNYKHTCECK-PGFNNLLNTS 151 (217)
Q Consensus 112 ~~~~DpC~~~~Cg~-GtC~~~~~~sY~C~C~-~Gy~n~~n~t 151 (217)
+...|.|..++|.+ |.|.-+ ...|.|.|. .||+|....+
T Consensus 542 C~i~drClPN~CehgG~C~Qs-~~~f~C~C~~TGY~GatCHt 582 (1306)
T KOG3516|consen 542 CGISDRCLPNPCEHGGKCSQS-WDDFECNCELTGYKGATCHT 582 (1306)
T ss_pred cccccccCCccccCCCccccc-ccceeEeccccccccccccC
Confidence 34679999999995 699874 458999999 9999985544
No 53
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=63.38 E-value=7.2 Score=29.75 Aligned_cols=31 Identities=29% Similarity=0.847 Sum_probs=23.5
Q ss_pred CCCCcC-CCCC-CCeeecCCCCCCcccccCCCCCccC
Q 027901 37 DKMCEK-VDCG-KGKCRADMTHPFNFRCECEPGWKKT 71 (217)
Q Consensus 37 ~d~C~~-~pC~-~GtC~~~~~~~~~Y~C~C~pGwtG~ 71 (217)
.|.|+. ..|| +|.|... ....|+|.+||+-+
T Consensus 77 ~d~Cd~y~~CG~~g~C~~~----~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 77 KDQCDVYGFCGPNGICNSN----NSPKCSCLPGFEPK 109 (110)
T ss_pred ccCCCCccccCCccEeCCC----CCCceECCCCcCCC
Confidence 578984 6898 5999643 24579999999854
No 54
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=59.89 E-value=22 Score=39.90 Aligned_cols=37 Identities=22% Similarity=0.671 Sum_probs=29.8
Q ss_pred CcCCCCCC-CeeecCCCCCCccccc-CCCCCccCCCCCCC
Q 027901 40 CEKVDCGK-GKCRADMTHPFNFRCE-CEPGWKKTKDNDED 77 (217)
Q Consensus 40 C~~~pC~~-GtC~~~~~~~~~Y~C~-C~pGwtG~~c~~~~ 77 (217)
|+.=+|-+ |.|....+ +..+.|+ |.+||+|.+|+..+
T Consensus 777 C~~C~Cp~~~~~~~~~~-~~~~iCk~Cp~gytG~rCe~c~ 815 (1705)
T KOG1836|consen 777 CQPCPCPNGGACGQTPE-ILEVVCKNCPPGYTGLRCEECA 815 (1705)
T ss_pred CccCCCCCChhhcCcCc-ccceecCCCCCCCcccccccCC
Confidence 88888975 67887754 5679999 99999999998543
No 55
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=59.78 E-value=19 Score=35.64 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=19.6
Q ss_pred CeeecCCCCCCcccccCCCCCccCCCC
Q 027901 48 GKCRADMTHPFNFRCECEPGWKKTKDN 74 (217)
Q Consensus 48 GtC~~~~~~~~~Y~C~C~pGwtG~~c~ 74 (217)
-.|+-.. .+.++|+|..+-+|+.|+
T Consensus 285 s~Cv~d~--~~~ltCdC~HNTaGPdCg 309 (592)
T KOG3512|consen 285 SRCVMDE--SSHLTCDCEHNTAGPDCG 309 (592)
T ss_pred ceeeecc--CCceEEecccCCCCCCcc
Confidence 3588553 345999999999999986
No 56
>PRK13664 hypothetical protein; Provisional
Probab=56.42 E-value=10 Score=27.04 Aligned_cols=14 Identities=14% Similarity=0.522 Sum_probs=10.4
Q ss_pred HHHH-HHHHHHHHHh
Q 027901 202 HWMS-ILIMSMVIAI 215 (217)
Q Consensus 202 ~~~~-~~~~~~~~~~ 215 (217)
+||| ||++.+||++
T Consensus 7 yWWilill~lvG~i~ 21 (62)
T PRK13664 7 YWWILVLVFLVGVLL 21 (62)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4555 7888888875
No 57
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=55.93 E-value=9.1 Score=30.09 Aligned_cols=33 Identities=33% Similarity=0.786 Sum_probs=21.7
Q ss_pred CCCc--CCCC-CCCeeecCCCC--CCcccccCCCCCcc
Q 027901 38 KMCE--KVDC-GKGKCRADMTH--PFNFRCECEPGWKK 70 (217)
Q Consensus 38 d~C~--~~pC-~~GtC~~~~~~--~~~Y~C~C~pGwtG 70 (217)
+.|+ .+.| +||.|+..... ..=|.|+|.+.+..
T Consensus 6 ~aC~~~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~ 43 (103)
T PF12955_consen 6 DACENATNNCSGHGSCVKKYGSGGGDCFACKCKPTVVK 43 (103)
T ss_pred HHHHHhccCCCCCceEeeccCCCccceEEEEeeccccc
Confidence 4454 4468 48999987422 13599999995443
No 58
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=55.18 E-value=27 Score=35.95 Aligned_cols=21 Identities=38% Similarity=1.160 Sum_probs=15.5
Q ss_pred cC-CCeEeeCCCCceeeecCCCCccC
Q 027901 123 CG-EGTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 123 Cg-~GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
|. +|.|.+ .++|.|.+||...
T Consensus 632 C~g~GVCnn----~~~ChC~~gwapp 653 (716)
T KOG3607|consen 632 CNGHGVCNN----ELNCHCEPGWAPP 653 (716)
T ss_pred cCCCcccCC----CcceeeCCCCCCC
Confidence 54 466643 4789999999876
No 59
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=55.00 E-value=47 Score=28.97 Aligned_cols=33 Identities=30% Similarity=0.793 Sum_probs=21.6
Q ss_pred eeeecCCCCccCCCCCC-CCCc--cCCCCCCCccCC
Q 027901 136 HTCECKPGFNNLLNTSY-FPCF--SNCTLGADCEKL 168 (217)
Q Consensus 136 Y~C~C~~Gy~n~~n~t~-~pC~--~~C~~G~dC~~l 168 (217)
-.|.|.+||++...... ..|. ..|.+|+.|...
T Consensus 162 ~~c~c~~g~~g~~~~~~~~~c~~~~~~~~g~~C~~~ 197 (316)
T KOG1218|consen 162 GICTCQPGFVGVFCVESCSGCSPLTACENGAKCNRS 197 (316)
T ss_pred CceeccCCcccccccccCCCcCCCcccCCCCeeecc
Confidence 45778888888865554 3366 566666667655
No 60
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=50.21 E-value=9.5 Score=25.32 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=14.0
Q ss_pred cccccCCCCCccCCCC
Q 027901 59 NFRCECEPGWKKTKDN 74 (217)
Q Consensus 59 ~Y~C~C~pGwtG~~c~ 74 (217)
.-+|.|.+||+|.+|+
T Consensus 18 ~G~C~C~~~~~G~~C~ 33 (50)
T cd00055 18 TGQCECKPNTTGRRCD 33 (50)
T ss_pred CCEEeCCCcCCCCCCC
Confidence 3589999999999986
No 61
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.83 E-value=30 Score=37.82 Aligned_cols=38 Identities=24% Similarity=0.598 Sum_probs=26.9
Q ss_pred CCCCcCCCCCCC---------eeecCCCCCCcccccCCCCCccCCCCC
Q 027901 37 DKMCEKVDCGKG---------KCRADMTHPFNFRCECEPGWKKTKDND 75 (217)
Q Consensus 37 ~d~C~~~pC~~G---------tC~~~~~~~~~Y~C~C~pGwtG~~c~~ 75 (217)
+..|..-||-.| +|.-. +......|.|++||+|.+|+.
T Consensus 903 g~~CrPCpCP~gp~Sg~~~A~sC~~d-~~t~~ivC~C~~GY~G~RCe~ 949 (1758)
T KOG0994|consen 903 GIGCRPCPCPDGPASGRQHADSCYLD-TRTQQIVCHCQEGYSGSRCEI 949 (1758)
T ss_pred CCCCCCCCCCCCCccchhcccccccc-ccccceeeecccCccccchhh
Confidence 556877788653 35533 234567999999999999984
No 62
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=49.62 E-value=7.4 Score=25.52 Aligned_cols=22 Identities=23% Similarity=0.632 Sum_probs=17.1
Q ss_pred CeeecCCCCCCcccccCCCCCccCCCC
Q 027901 48 GKCRADMTHPFNFRCECEPGWKKTKDN 74 (217)
Q Consensus 48 GtC~~~~~~~~~Y~C~C~pGwtG~~c~ 74 (217)
.+|... ..+|.|.++|+|.+|+
T Consensus 11 ~~C~~~-----~G~C~C~~~~~G~~C~ 32 (49)
T PF00053_consen 11 QTCDPS-----TGQCVCKPGTTGPRCD 32 (49)
T ss_dssp SSEEET-----CEEESBSTTEESTTS-
T ss_pred CcccCC-----CCEEeccccccCCcCc
Confidence 367653 4799999999999987
No 63
>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=29 Score=36.92 Aligned_cols=36 Identities=19% Similarity=0.588 Sum_probs=29.0
Q ss_pred CCCCCcCCCCCCC-eeecCCCCCCcccccCCCCCccCCCC
Q 027901 36 FDKMCEKVDCGKG-KCRADMTHPFNFRCECEPGWKKTKDN 74 (217)
Q Consensus 36 ~~d~C~~~pC~~G-tC~~~~~~~~~Y~C~C~pGwtG~~c~ 74 (217)
.++.|...+|.+. -|-.. .....|.|.+||+|..|+
T Consensus 405 ~g~~c~~~p~~~~g~c~p~---~~~~~c~c~~g~~G~~c~ 441 (964)
T KOG3509|consen 405 LGDVCWRIPCQHDGPCLQT---LEGKQCLCPPGYTGDSCE 441 (964)
T ss_pred CCCccccccCCCCcccccc---ccccceeccccccCchhh
Confidence 3678888999874 56655 567899999999999886
No 64
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=48.01 E-value=11 Score=24.81 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=13.5
Q ss_pred ccccCCCCCccCCCC
Q 027901 60 FRCECEPGWKKTKDN 74 (217)
Q Consensus 60 Y~C~C~pGwtG~~c~ 74 (217)
-.|+|.+||+|.+|+
T Consensus 18 G~C~C~~~~~G~~C~ 32 (46)
T smart00180 18 GQCECKPNVTGRRCD 32 (46)
T ss_pred CEEECCCCCCCCCCC
Confidence 589999999999886
No 65
>cd01328 FSL_SPARC Follistatin-like SPARC (secreted protein, acidic, and rich in cysteines) domain; SPARC/BM-40/osteonectin is a multifunctional glycoprotein which modulates cellular interaction with the extracellular matrix by its binding to structural matrix proteins such as collagen and vitronectin. The protein it composed of an N-terminal acidic region, a follistatin (FS) domain and an EF-hand calcium binding domain. The FS domain consists of an N-terminal beta hairpin (FOLN/EGF-like domain) and a small hydrophobic core of alpha/beta structure (Kazal domain) and has five disulfide bonds and a conserved N-glycosylation site. The FSL_SPARC domain is a member of the superfamily of kazal-like proteinase inhibitors and follistatin-like proteins.
Probab=44.70 E-value=25 Score=26.65 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=20.7
Q ss_pred CCCCCccCCC-eEeeCCCCceeeecCCC
Q 027901 117 PCSWIYCGEG-TCRNTSNYKHTCECKPG 143 (217)
Q Consensus 117 pC~~~~Cg~G-tC~~~~~~sY~C~C~~G 143 (217)
||....|+.| +|+-+..+.-+|.|.+-
T Consensus 1 pC~~v~C~~G~~C~~d~~~~p~CvC~~~ 28 (86)
T cd01328 1 PCENHHCGAGKVCEVDDENTPKCVCIDP 28 (86)
T ss_pred CCCCcCCCCCCEeeECCCCCeEEecCCc
Confidence 6788889977 89865455789999754
No 66
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.00 E-value=96 Score=34.23 Aligned_cols=89 Identities=19% Similarity=0.381 Sum_probs=47.6
Q ss_pred ccccCCCCCccCCCCCCC-CCCCCCCccCC-------CCcCCCCccc---cCCCCC-----CCC-CCCC-CCCCCCCCCC
Q 027901 60 FRCECEPGWKKTKDNDED-NDHSFLPCIIP-------DCTLHYDSCH---TAPPPD-----PDK-VPHN-ISVFEPCSWI 121 (217)
Q Consensus 60 Y~C~C~pGwtG~~c~~~~-~~~~~~PC~~~-------~Ct~~~gsC~---~~~~~~-----~~g-~g~n-~~~~DpC~~~ 121 (217)
-.|.|.+|--|.+|+.-+ -.+-|..|..= .|..-.|.|. +.-... ..| .|.- ...-++|..-
T Consensus 830 GQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPC 909 (1758)
T KOG0994|consen 830 GQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPC 909 (1758)
T ss_pred cceeeccccchhhccccCCCccCCCcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCC
Confidence 367788888887776322 14556544321 3433333332 221111 233 2222 2234677777
Q ss_pred ccCCC---------eEeeC-CCCceeeecCCCCccCC
Q 027901 122 YCGEG---------TCRNT-SNYKHTCECKPGFNNLL 148 (217)
Q Consensus 122 ~Cg~G---------tC~~~-~~~sY~C~C~~Gy~n~~ 148 (217)
||-+| +|.-. ....-.|.|++||+|..
T Consensus 910 pCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~R 946 (1758)
T KOG0994|consen 910 PCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSR 946 (1758)
T ss_pred CCCCCCccchhccccccccccccceeeecccCccccc
Confidence 77532 47532 23468899999999985
No 67
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=33.95 E-value=13 Score=26.34 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.3
Q ss_pred cCCCCCccCCC
Q 027901 63 ECEPGWKKTKD 73 (217)
Q Consensus 63 ~C~pGwtG~~c 73 (217)
.|.+||+|.+|
T Consensus 53 ~C~~Gw~G~~C 63 (63)
T PF01414_consen 53 VCLPGWTGPNC 63 (63)
T ss_dssp EE-TTEESTTS
T ss_pred CCCCCCcCCCC
Confidence 57899999875
No 68
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=33 Score=35.25 Aligned_cols=16 Identities=38% Similarity=1.001 Sum_probs=13.6
Q ss_pred cccccCCCCCccCCCC
Q 027901 59 NFRCECEPGWKKTKDN 74 (217)
Q Consensus 59 ~Y~C~C~pGwtG~~c~ 74 (217)
.+.|.|.+||.++.|+
T Consensus 641 ~~~ChC~~gwapp~C~ 656 (716)
T KOG3607|consen 641 ELNCHCEPGWAPPFCF 656 (716)
T ss_pred CcceeeCCCCCCCccc
Confidence 4789999999998876
No 69
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=29.42 E-value=41 Score=21.45 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=10.4
Q ss_pred cccccCCCCCccC
Q 027901 59 NFRCECEPGWKKT 71 (217)
Q Consensus 59 ~Y~C~C~pGwtG~ 71 (217)
.+.|.|..||--.
T Consensus 17 ~~~C~CPeGyIld 29 (34)
T PF09064_consen 17 PGQCFCPEGYILD 29 (34)
T ss_pred CCceeCCCceEec
Confidence 4699999999653
No 70
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=29.12 E-value=74 Score=20.85 Aligned_cols=20 Identities=35% Similarity=1.041 Sum_probs=14.0
Q ss_pred cCC-CeEeeCCCCceeeecCCCCccC
Q 027901 123 CGE-GTCRNTSNYKHTCECKPGFNNL 147 (217)
Q Consensus 123 Cg~-GtC~~~~~~sY~C~C~~Gy~n~ 147 (217)
|.+ ..|++. +|.|++||.-.
T Consensus 28 C~~~s~C~~g-----~C~C~~g~~~~ 48 (52)
T PF01683_consen 28 CIGGSVCVNG-----RCQCPPGYVEV 48 (52)
T ss_pred CCCcCEEcCC-----EeECCCCCEec
Confidence 553 478542 69999999754
No 71
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=27.31 E-value=46 Score=29.47 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=25.1
Q ss_pred CcccccCCCCCCCCCcCCCCCCCeeecC------CCCCCccccc-CCCCCccC
Q 027901 26 DDLAPALSPFFDKMCEKVDCGKGKCRAD------MTHPFNFRCE-CEPGWKKT 71 (217)
Q Consensus 26 ~f~s~~~~~~~~d~C~~~pC~~GtC~~~------~~~~~~Y~C~-C~pGwtG~ 71 (217)
+.|.-++.| ...| + +++.|... .|.+.++.|+ |-.||.|.
T Consensus 42 ~~W~fl~cP--~~~c--N--Gh~~c~t~~v~~~~~N~~~g~~c~kc~~g~~Gd 88 (217)
T KOG1388|consen 42 EIWRFLFCP--LCQC--N--GHSDCNTQHVCWRCENGTTGAHCEKCIVGFYGD 88 (217)
T ss_pred chhhhhcCh--HHHh--c--CCCCcccceeeeeccCccccccCCceEEEEEec
Confidence 358888877 2333 3 55555533 2335678888 88888884
No 72
>PLN03148 Blue copper-like protein; Provisional
Probab=25.92 E-value=65 Score=27.31 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=9.9
Q ss_pred CCCc-cCCCCCCCccCCCccCCCC
Q 027901 153 FPCF-SNCTLGADCEKLGIRSSDS 175 (217)
Q Consensus 153 ~pC~-~~C~~G~dC~~lgi~~~~~ 175 (217)
|.|. .-|..| ..|-|.+.+.
T Consensus 100 FIcg~ghC~~G---mKl~I~V~~~ 120 (167)
T PLN03148 100 FICGNGQCFNG---MKVTILVHPL 120 (167)
T ss_pred EEcCCCccccC---CEEEEEEcCC
Confidence 4444 345555 3445666554
No 73
>smart00274 FOLN Follistatin-N-terminal domain-like. Follistatin-N-terminal domain-like, EGF-like. Region distinct from the kazal-like sequence
Probab=25.30 E-value=86 Score=18.53 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=14.4
Q ss_pred CCCCCccCCC-eEeeCCCCceee
Q 027901 117 PCSWIYCGEG-TCRNTSNYKHTC 138 (217)
Q Consensus 117 pC~~~~Cg~G-tC~~~~~~sY~C 138 (217)
+|....|..| +|+.+..+.-+|
T Consensus 1 ~C~~v~C~~G~~C~~d~~g~p~C 23 (26)
T smart00274 1 SCRNVQCPFGKVCVVDKGGNARC 23 (26)
T ss_pred CCCCEECCCCCEEEeCCCCCEEE
Confidence 3666778866 787754446666
No 74
>PF09289 FOLN: Follistatin/Osteonectin-like EGF domain; InterPro: IPR015369 This domain is predominantly found in osteonectin and follistatin. They adopt an EGF-like structure [, ]. Follistatin is involved in diverse activities from embryonic development to cell secretion. ; GO: 0005515 protein binding; PDB: 1LR7_A 1LR8_A 1LR9_A 2ARP_F 3B4V_H 2KCX_A 3SEK_C 2P6A_D 3HH2_C 2B0U_D ....
Probab=22.56 E-value=88 Score=18.05 Aligned_cols=21 Identities=29% Similarity=0.743 Sum_probs=11.1
Q ss_pred CCCCccCCC-eEeeCCCCceee
Q 027901 118 CSWIYCGEG-TCRNTSNYKHTC 138 (217)
Q Consensus 118 C~~~~Cg~G-tC~~~~~~sY~C 138 (217)
|....|+.| .|.-+..+..+|
T Consensus 1 C~n~~Ck~GKvC~~d~~~~P~C 22 (22)
T PF09289_consen 1 CDNFHCKRGKVCKVDEQGKPHC 22 (22)
T ss_dssp STT---BTTEEEEEETTTCEEE
T ss_pred CCCcccCCCCEeeeCCCCCcCC
Confidence 556778877 787644445554
Done!