BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027904
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLC-KGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177
+VV+DF+ T CG CK I F K+ +GD+ V F K +V DEQS++A+ + I+
Sbjct: 35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDK---VGFYKVDV----DEQSQIAQEVGIR 87
Query: 178 TVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211
+P F F+KNG ++ D ++ AAI ++++
Sbjct: 88 AMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY 164
EF + K+KE G +V++DF + CG C++I F++ K + +FLK +V
Sbjct: 24 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFPGAVFLKVDV---- 75
Query: 165 DEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214
DE EVAE+ ++ +P F F K+GA + K+ + I+K+ T+
Sbjct: 76 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATA 125
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+K +G LVV+DF+ T CG CK I +L D V+ LK +V DE ++A
Sbjct: 21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV----DECEDIAM 73
Query: 173 RLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206
I ++P F F KNG VE F + +R++ I
Sbjct: 74 EYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 107
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 113 SKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+K +G LVV+DF+ T CG CK I +L D V+ LK +V DE ++A
Sbjct: 16 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDV----DECEDIAM 68
Query: 173 RLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206
I ++P F F KNG VE F + +R++ I
Sbjct: 69 EYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 102
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDAQDVASEAEVKA 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
P F F+K G V F +KE+++A I
Sbjct: 74 TPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K+
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASECEVKS 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K+
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASESEVKS 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASECEVKC 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L+K+ E+ +LVVVDF + CG C++I F+ L K + V+FLK + DE
Sbjct: 31 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDT----DELKS 82
Query: 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211
VA I+ +P F F K G +++ K+ + + I K+ +
Sbjct: 83 VASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASEXEVKC 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASECEVKC 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
P F F+K G V F +KE+++A I
Sbjct: 74 TPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D D VA ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDVNDCQD----VASECEVKC 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
T EF + K+TG LV++DF + CG C+ I F++ K + IFLK +V
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK----KFPGAIFLKVDV- 67
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTSN 215
DE +VAE ++ +P F F K+G V++ K+ I I+ + S
Sbjct: 68 ---DELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAST 118
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG K I+ F L ++ + VIFL+ +V D+ +VA ++K+
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLS----EKYSNVIFLEVDV----DDSQDVASESEVKS 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
EK K + L+VVDF + C CK I F++L K + V FLK +V DE
Sbjct: 19 FEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDV----DELKA 70
Query: 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211
VAE ++ +P F F K+G LV+ DK+ + + K+ +
Sbjct: 71 VAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG K I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPAKMIKPFFHSLS----EKYSNVIFLEVDV----DDAQDVASEAEVKA 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
P F F+K G V F +KE+++A I
Sbjct: 74 TPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG K I+ F L ++ + VIFL+ +V D+ +VA ++K+
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASECEVKS 84
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 85 MPTFQFFKKGQKVGEFSGANKEKLEATI 112
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K +F K L ++ LVV+DFY T CG CK I +L + D V+FL
Sbjct: 2 VYQVKDQEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERI 202
K +V DE ++A+ +I +P F F KNG +++ + +++
Sbjct: 56 KVDV----DECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG K I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASECEVKR 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V+ + AEF I+ +++ LV+VDF+ CG CK I + + K ++F+
Sbjct: 10 VKIVTSQAEFDSIISQNE----LVIVDFFAEWCGPCKRIAPFYEECSKTY----TKMVFI 61
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211
K +V DE SEV E+ I ++P F YKNG+ V+ + + I KY +
Sbjct: 62 KVDV----DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG CK I K +Q F
Sbjct: 2 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF----SEQYPQADFY 53
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNG----ALVEAFPTRDKERIDA 204
K +V DE +VA++ ++ +P +KNG +V A P K+ I A
Sbjct: 54 KLDV----DELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 101
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG CK I K +Q F
Sbjct: 8 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPCKMIAPMIEKF----SEQYPQADFY 59
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNG----ALVEAFPTRDKERIDA 204
K +V DE +VA++ ++ +P +KNG +V A P K+ I A
Sbjct: 60 KLDV----DELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 107
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T CG CK I+ F L ++ + VIFL+ +V D D SE ++K
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFLEVDVDDXQDVASEX----EVKC 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG CK I K +Q + F
Sbjct: 9 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKF----AEQYSDAAFY 61
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGA----LVEAFPTRDKERI 202
K +V DE S+VA++ ++ ++P FYK G +V A P K+ I
Sbjct: 62 KLDV----DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 107
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG CK I K +Q + F
Sbjct: 2 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKF----AEQYSDAAFY 54
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGA----LVEAFPTRDKERI 202
K +V DE S+VA++ ++ ++P FYK G +V A P K+ I
Sbjct: 55 KLDV----DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 100
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF T G K I+ F L ++ + VIFL+ +V D+ +VA ++K
Sbjct: 22 LVVVDFSATWSGPSKMIKPFFHSL----SEKYSNVIFLEVDV----DDCQDVASECEVKC 73
Query: 179 VPLFHFYKNGALVEAFPTRDKERIDAAI 206
+P F F+K G V F +KE+++A I
Sbjct: 74 MPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L K KE +VVDF T CG CK I F L S D VIFLK + D +
Sbjct: 17 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL---SNDYAGKVIFLKVD----VDAVAA 69
Query: 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTST 212
VAE I +P FH YK+G + ++++ A + K+ +
Sbjct: 70 VAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA 112
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V +FKT +EF + + K LVVVDFY T CG K I K +Q F
Sbjct: 8 VTQFKTASEFDSAIAQDK----LVVVDFYATWCGPSKMIAPMIEKF----SEQYPQADFY 59
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNG----ALVEAFPTRDKERIDA 204
K +V DE +VA++ ++ +P +KNG +V A P K+ I A
Sbjct: 60 KLDV----DELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 107
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
E K D + +LE+ K LVVVDF+ T CG CK I F +L ++ IF+K
Sbjct: 8 ELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKV 60
Query: 159 NVIDEYDEQSEVAERLKIKTVPLFHFYKNG 188
+V D+ E A + I +P F KNG
Sbjct: 61 DV----DKLEETARKYNISAMPTFIAIKNG 86
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKH 158
E K D + +LE+ K LVVVDF+ T CG CK I F +L ++ IF+K
Sbjct: 17 ELKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKV 69
Query: 159 NVIDEYDEQSEVAERLKIKTVPLFHFYKNG 188
+V D+ E A + I +P F KNG
Sbjct: 70 DV----DKLEETARKYNISAMPTFIAIKNG 95
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
+R T A+ K++ ++K G L+VVDF+ CG C+ I L K + E F
Sbjct: 1 MRVLATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE----FA 54
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKY 209
K +V D+ E A + + +P F F K+G V+ F ++ ++ I ++
Sbjct: 55 KVDV----DQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRH 103
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
+E++ LVV+DF + CG C+ + F+ L K + +FLK +V DE
Sbjct: 27 IEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDV----DELKP 78
Query: 170 VAERLKIKTVPLFHFYKNG 188
+AE+ ++ +P F F K G
Sbjct: 79 IAEQFSVEAMPTFLFMKEG 97
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V++ ++ F + L+ + + LVVVDF T CG CK I+ F L ++ + VIFL
Sbjct: 2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSL----SEKYSNVIFL 55
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNG 188
+ +V D+ +VA + I+ +P +KNG
Sbjct: 56 EVDV----DDAQDVAPKYGIRGIPTLLLFKNG 83
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL 156
V + K+ +E+ L + LVVVDF+ T CG K I K +Q + F
Sbjct: 10 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPSKMIAPMIEKFA----EQYSDAAFY 62
Query: 157 KHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGA----LVEAFPTRDKERI 202
K +V DE S+VA++ ++ ++P FYK G +V A P K+ I
Sbjct: 63 KLDV----DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 108
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LVVVDF+ T CG K I K + D F K +V DE S+VA++ ++ +
Sbjct: 21 LVVVDFFATWCGPSKMIAPMIEKFAEQYSDAA----FYKLDV----DEVSDVAQKAEVSS 72
Query: 179 VPLFHFYKNGA----LVEAFPTRDKERI 202
+P FYK G +V A P K+ I
Sbjct: 73 MPTLIFYKGGKEVTRVVGANPAAIKQAI 100
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
+V+DFY T CG CK ++ +KL + D V F+K +V DE ++A+ ++ +
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDV----DESPDIAKECEVTAM 84
Query: 180 PLFHFYKNGALV 191
P F K+G L+
Sbjct: 85 PTFVLGKDGQLI 96
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
L K KE +VV F T CG CK I F L S D VIFLK + D +
Sbjct: 17 LAKGKEEHKPIVVAFTATWCGPCKMIAPLFETL---SNDYAGKVIFLK----VDVDAVAA 69
Query: 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTST 212
VAE I +P FH YK+G + ++++ A + K+ +
Sbjct: 70 VAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA 112
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 109 ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQS 168
+L + KE LV+VDF+ T CG C+ + Q + + + D V F+K +V D+
Sbjct: 15 LLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD----VTFIKVDV----DKNG 66
Query: 169 EVAERLKIKTVPLFHFYKNGA----LVEAFPTRDKERIDAAILKY 209
A+ + ++P F K ++ F D RI A I K+
Sbjct: 67 NAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CGSCK I +L + D E LK +V
Sbjct: 9 TDADF-----DSKVESGVQLVDFWATWCGSCKMIAPVLEEL---AADYEGKADILKLDV- 59
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
DE A + ++ ++P +K+G V+
Sbjct: 60 ---DENPSTAAKYEVMSIPTLIVFKDGQPVD 87
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T+CG CK I +L + D E LK +V
Sbjct: 9 TDADF-----DSKVESGVQLVDFWATACGPCKMIAPVLEEL---AADYEGKADILKLDV- 59
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
DE A + ++ ++P +K+G V+
Sbjct: 60 ---DENPSTAAKYEVMSIPTLIVFKDGQPVD 87
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169
+E++ LVV+DF + CG + + F+ L K + +FLK +V DE
Sbjct: 30 IEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPN----AVFLKVDV----DELKP 81
Query: 170 VAERLKIKTVPLFHFYKNG 188
+AE+ ++ +P F F K G
Sbjct: 82 IAEQFSVEAMPTFLFMKEG 100
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CG+CK I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGTCKMIAPVLEEL---AADYEGKADILKLDV- 60
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
DE A + ++ ++P +K+G V+
Sbjct: 61 ---DENPSTAAKYEVMSIPTLIVFKDGQPVD 88
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+VDF+ CG CK I +L K + + K N DE +A + I+++
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAK---EYSGKIAVYKLNT----DEAPGIATQYNIRSI 72
Query: 180 PLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214
P F+KNG KE I A+ K T T S
Sbjct: 73 PTVLFFKNG--------ERKESIIGAVPKSTLTDS 99
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CG CK I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGPCKMIAPVLEEL---AADYEGKADILKLDV- 60
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
DE A + ++ ++P +K+G V+
Sbjct: 61 ---DENPSTAAKYEVMSIPTLIVFKDGQPVD 88
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+VDF+ CG CK I +L K + + K N DE +A + I+++
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAK---EYSGKIAVYKLNT----DEAPGIATQYNIRSI 73
Query: 180 PLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214
P F+KNG KE I A+ K T T S
Sbjct: 74 PTVLFFKNG--------ERKESIIGAVPKSTLTDS 100
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA F + ++ K V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANFQQAIQGDKP----VLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV- 57
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALV-EAFPTRDKERIDAAI 206
DE E + I ++P +K G V + + KE+++A +
Sbjct: 58 ---DENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA F + ++ K V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANFQQAIQGDKP----VLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV- 57
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALV-EAFPTRDKERIDAAI 206
DE E + I ++P +K G V + + KE+++A +
Sbjct: 58 ---DENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177
L +VDF+ CG C+ + +L + D + +K NV DE +A R ++
Sbjct: 51 PLTLVDFFAPWCGPCRLVSPILEELAR---DHAGRLKVVKVNV----DEHPGLAARYGVR 103
Query: 178 TVPLFHFYKNGALVEAFPTRDKERI 202
+VP ++ GA V + R+
Sbjct: 104 SVPTLVLFRRGAPVATWVGASPRRV 128
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 113 SKETG-SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA 171
S ET +V+ DF+ CG CK I +L + GD+ LK ID DE E A
Sbjct: 12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDK------LKIVKID-VDENQETA 64
Query: 172 ERLKIKTVPLFHFYKNGALVE 192
+ + ++P K+G +VE
Sbjct: 65 GKYGVMSIPTLLVLKDGEVVE 85
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
VV+D + CG CK + + KL + D VIFLK +D E +A+ L I+ V
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLK---LDCNQENKTLAKELGIRVV 80
Query: 180 PLFHFYKNGALV 191
P F K ++V
Sbjct: 81 PTFKILKENSVV 92
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 86 DEDDDLCPVEC----VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSK 141
D DDD +E V T + + L ++ G +V+ +F CG CK I + +
Sbjct: 11 DADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIE 70
Query: 142 LCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201
L + ++FL VID DE S+ + +IK P F F ++G V+ +K
Sbjct: 71 L----SENYPSLMFL---VID-VDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPE 122
Query: 202 IDAAI 206
+ I
Sbjct: 123 LHKKI 127
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
VVVDF+ CG CK + K+ Q V+ K ++ D+ +++A ++ V
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMV---AKQHGKVVMAKVDI----DDHTDLAIEYEVSAV 86
Query: 180 PLFHFYKNGALVEAFP-TRDKERIDAAILK 208
P KNG +V+ F +D+++++A + K
Sbjct: 87 PTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 116
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
VV+D + CG CK + + KL + D VIFLK +D E +A+ L I+ V
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLK---LDCNQENKTLAKELGIRVV 92
Query: 180 PLFHFYKNGALV 191
P F K ++V
Sbjct: 93 PTFKILKENSVV 104
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA F +++ + V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANF----QQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV- 57
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALV-EAFPTRDKERIDAAI 206
DE E + I ++P +K G V + + KE+++A +
Sbjct: 58 ---DENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177
LV+VDF+ C C+ I ++ K + E ++ K +V DE + A R ++
Sbjct: 20 PLVLVDFWAEWCAPCRXIAPILEEIAK---EYEGKLLVAKLDV----DENPKTAXRYRVX 72
Query: 178 TVPLFHFYKNGALVEAFP-TRDKERIDAAILKYTSTTS 214
++P +K+G VE + K A I K+ T+
Sbjct: 73 SIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPATA 110
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177
LV+VDF+ C C+ I ++ K + E ++ K +V DE + A R ++
Sbjct: 19 PLVLVDFWAEWCAPCRXIAPILEEIAK---EYEGKLLVAKLDV----DENPKTAXRYRVX 71
Query: 178 TVPLFHFYKNGALVEAFP-TRDKERIDAAILKYTSTTS 214
++P +K+G VE + K A I K+ T+
Sbjct: 72 SIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPATA 109
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA F +++ + V+VDF+ CG C+ + + + D+ V K NV
Sbjct: 6 TDANF----QQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNV- 57
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALV-EAFPTRDKERIDAAI 206
DE E + I ++P +K G V + + KE+++A +
Sbjct: 58 ---DENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180
V+DF+ CG C+ F++ + ++ V F+K N + + ++ R +I+++P
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAET---AAERAGKVRFVKVNT----EAEPALSTRFRIRSIP 111
Query: 181 LFHFYKNGALVEAF 194
Y+NG ++
Sbjct: 112 TIXLYRNGKXIDXL 125
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
TDA+F SK + +VDF+ T CG+ K I +L + D E LK +V
Sbjct: 10 TDADF-----DSKVESGVQLVDFWATWCGTSKMIAPVLEEL---AADYEGKADILKLDV- 60
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
DE A + ++ ++P +K+G V+
Sbjct: 61 ---DENPSTAAKYEVMSIPTLIVFKDGQPVD 88
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+VDF+ CG K I +L K + + K N DE +A + I+++
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAK---EYSGKIAVYKLNT----DEAPGIATQYNIRSI 73
Query: 180 PLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214
P F+KNG KE I A+ K T T S
Sbjct: 74 PTVLFFKNG--------ERKESIIGAVPKSTLTDS 100
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
+++V+FY CG CK + + K K + P+ K + EQ+++A+R +
Sbjct: 26 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT----EQTDLAKRFDVSG 81
Query: 179 VPLFHFYKNG 188
P ++ G
Sbjct: 82 YPTLKIFRKG 91
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+VDF+ CG C+ I + GD+ + +K N+ DE A + + ++
Sbjct: 26 VLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNI----DENPGTAAKYGVMSI 78
Query: 180 PLFHFYKNG 188
P + Y+ G
Sbjct: 79 PTLNVYQGG 87
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
+VVVDF+ C C + +L + V F K N +E ++A R I +
Sbjct: 25 IVVVDFWAEWCAPCLILAPVIEEL----ANDYPQVAFGKLNT----EESQDIAMRYGIMS 76
Query: 179 VPLFHFYKNGALVE 192
+P F+KNG LV+
Sbjct: 77 LPTIMFFKNGELVD 90
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
+V+ DF+ CG K I +L + GD+ LK ID DE E A + + +
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDK------LKIVKID-VDENQETAGKYGVMS 71
Query: 179 VPLFHFYKNGALVE 192
+P K+G +VE
Sbjct: 72 IPTLLVLKDGEVVE 85
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
+V+ DF+ CG K I +L + GD+ LK ID DE E A + + +
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDK------LKIVKID-VDENQETAGKYGVMS 71
Query: 179 VPLFHFYKNGALVE 192
+P K+G +VE
Sbjct: 72 IPTLLVLKDGEVVE 85
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
LV+VDF+ CG CK I ++ K + V K N+ D+ E ++++
Sbjct: 22 LVLVDFWAEWCGPCKMIGPALGEIGK---EFAGKVTVAKVNI----DDNPETPNAYQVRS 74
Query: 179 VPLFHFYKNGALVE 192
+P ++G +++
Sbjct: 75 IPTLMLVRDGKVID 88
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + D + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADDYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+VDF+ CG C+ I +L K + V DE A + I+++
Sbjct: 22 VLVDFWAPWCGPCRMIAPIIEELAKEYEGK-------VKVVKVNVDENPNTAAQYGIRSI 74
Query: 180 PLFHFYKNGALVE----AFPTRD-KERID 203
P +KNG +V+ A P KERID
Sbjct: 75 PTLLLFKNGQVVDRLVGAQPKEALKERID 103
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA F +L +K V+VDF+ T CG CK + ++ + ++ + K +V
Sbjct: 18 TDASFATDVLSSNKP----VLVDFWATWCGPCKMVAPVLEEI---ATERATDLTVAKLDV 70
Query: 161 IDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
D E A ++ ++P +K+G V+
Sbjct: 71 ----DTNPETARNFQVVSIPTLILFKDGQPVK 98
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+++FY CG CK + K+ D++ P+ K + S +A R +
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT----SASVLASRFDVSGY 90
Query: 180 PLFHFYKNGALVEAFPTRDKERIDAAI 206
P K G V+ +R +E I A +
Sbjct: 91 PTIKILKKGQAVDYEGSRTQEEIVAKV 117
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176
+++V+FY CG CK + + K K + P+ K + E D +A+R +
Sbjct: 147 ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD----LAKRFDV 202
Query: 177 KTVPLFHFYKNG 188
P ++ G
Sbjct: 203 SGYPTLKIFRKG 214
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA F +L +K V+VDF+ T CG CK + ++ + ++ + K +V
Sbjct: 13 TDASFATDVLSSNKP----VLVDFWATWCGPCKMVAPVLEEI---ATERATDLTVAKLDV 65
Query: 161 IDEYDEQSEVAERLKIKTVPLFHFYKNG 188
D E A ++ ++P +K+G
Sbjct: 66 ----DTNPETARNFQVVSIPTLILFKDG 89
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAP-VIFLKHNVIDEYDEQSEVAERLKI 176
SL+VV F+ C + + ++L K E P V F+K E + EV+E+ +I
Sbjct: 33 SLLVVHFWAPWAPQCAQMNEVMAELAK-----ELPQVSFVKL----EAEGVPEVSEKYEI 83
Query: 177 KTVPLFHFYKNG 188
+VP F F+KN
Sbjct: 84 SSVPTFLFFKNS 95
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAP-VIFLKHNVIDEYDEQSEVAERLKI 176
SL+VV F+ C + + ++L K E P V F+K E + EV+E+ +I
Sbjct: 39 SLLVVHFWAPWAPQCAQMNEVMAELAK-----ELPQVSFVKL----EAEGVPEVSEKYEI 89
Query: 177 KTVPLFHFYKN 187
+VP F F+KN
Sbjct: 90 SSVPTFLFFKN 100
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID 162
D E F L + L+V+ F+ + CK ++Q F + + V FL ID
Sbjct: 7 DQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLS---ID 61
Query: 163 EYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRD 198
DE SE++E +I VP F G +++ D
Sbjct: 62 A-DENSEISELFEISAVPYFIIIHKGTILKELSGAD 96
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 102 TDAEFFKIL----EKSKETGSL----VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPV 153
T AEF K + SKE L +VDFY CG CK + +L K + +
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK---EYAGKI 84
Query: 154 IFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184
K NV D++ E+A I+++P F
Sbjct: 85 YIYKVNV----DKEPELARDFGIQSIPTIWF 111
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V+++FY CG CK + K+ D + P+ K + S +A + +
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT----SASMLASKFDVSGY 92
Query: 180 PLFHFYKNGALVEAFPTRDKERIDAAI 206
P K G V+ +R +E I A +
Sbjct: 93 PTIKILKKGQAVDYDGSRTQEEIVAKV 119
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+++
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRSI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++V+FY CG CK + ++ K +G +A ++ +D E+S++A++ ++
Sbjct: 27 LLVEFYAPWCGHCKALAPEYA---KAAGKLKAEGSEIRLAKVDA-TEESDLAQQYGVRGY 82
Query: 180 PLFHFYKNG 188
P F++NG
Sbjct: 83 PTIKFFRNG 91
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIAE---EYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161
T+ F +++ +K LV+VD + C C E + K+ + + +F + NV
Sbjct: 10 TEENFDEVIRNNK----LVLVDCWAEWCAPCHLYEPIYKKVAEK---YKGKAVFGRLNV- 61
Query: 162 DEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFP-TRDKERIDAAILKY 209
DE ++A++ + +P + NG LV++ D++ +++ + KY
Sbjct: 62 ---DENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 102 TDAEFFKIL----EKSKETGSL----VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPV 153
T AEF K + SKE L +VDFY CG CK + +L K + +
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK---EYAGKI 84
Query: 154 IFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184
K NV D++ E+A I+ +P F
Sbjct: 85 YIYKVNV----DKEPELARDFGIQGIPTIWF 111
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I S L + + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKLIA---SILDEIADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 115 ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174
E+ V+VDF+ CG C+ I ++ +G+ + + +K N DE VA
Sbjct: 17 ESSVPVLVDFWAPWCGPCRIIAPVVDEI---AGEYKDKLKCVKLNT----DESPNVASEY 69
Query: 175 KIKTVPLFHFYKNG 188
I+++P +K G
Sbjct: 70 GIRSIPTIMVFKGG 83
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I + + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDDI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V V+FY CG CK + + KL + D E + VI + D + E +K+ +
Sbjct: 28 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-------NIVIAKMDSTANEVEAVKVHSF 80
Query: 180 PLFHFYKNGA 189
P F+ A
Sbjct: 81 PTLKFFPASA 90
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
V V+FY CG CK + + KL + D E + VI + D + E +K+ +
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-------NIVIAKMDSTANEVEAVKVHSF 322
Query: 180 PLFHFYKNGA 189
P F+ A
Sbjct: 323 PTLKFFPASA 332
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + + K N+ D+ A + I+ +
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 85
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 86 PTLLLFKNG 94
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG CK I ++ + + + K N+ D+ A + I+
Sbjct: 24 ILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLNI----DQNPGTAPKYGIRGT 76
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 77 PTLLLFKNG 85
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 109 ILEKSKETGSLVVVDFYRTSCGSC------------KYIEQGFS----KLCKGSGDQEAP 152
+++ S +TGS+V +DF+ + CG C KY +GF L +GD
Sbjct: 20 VVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKF 79
Query: 153 VIFLKHNVIDEYDEQSEVAERLKIKTVPL-FHFYKNGALV---EAFPTRDKERIDAAIL 207
+ + +D + + +K P F +NG ++ F DKE ++ IL
Sbjct: 80 LAQVPAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALEQQIL 138
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179
++VDF+ CG C+ I ++ + + + + K N+ D+ A + I+ +
Sbjct: 23 ILVDFWAEWCGPCEMIAPILDEI---ADEYQGKLTVAKLNI----DQNPGTAPKYGIRGI 75
Query: 180 PLFHFYKNG 188
P +KNG
Sbjct: 76 PTLLLFKNG 84
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID 162
D + + +E SK+ VVV FY +C CK E F + K G +F + N+
Sbjct: 13 DXTWSQQVEDSKKP---VVVXFYSPACPYCKAXEPYFEEYAKEYGSS---AVFGRINIAT 66
Query: 163 EYDEQSEVAERLKIKTVPLFHFYKNGALV 191
AE+ ++ P F F+ +G V
Sbjct: 67 ----NPWTAEKYGVQGTPTFKFFCHGRPV 91
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 102 TDAEFFK-ILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160
TDA F +L +K V+VDF+ T CG K + ++ ++ + K +V
Sbjct: 15 TDASFATDVLSSNKP----VLVDFWATWCGPSKMVAPVLEEIAT---ERATDLTVAKLDV 67
Query: 161 IDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192
D E A ++ ++P +K+G V+
Sbjct: 68 ----DTNPETARNFQVVSIPTLILFKDGQPVK 95
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
L V F CG CK IE+ K+ E P + K +D D SE+ + ++
Sbjct: 39 LTVAWFTAVWCGPCKTIERPMEKIA-----YEFPTV--KFAKVDA-DNNSEIVSKCRVLQ 90
Query: 179 VPLFHFYKNGALV 191
+P F ++G ++
Sbjct: 91 LPTFIIARSGKML 103
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178
+ VVDF+ C C + +L + V F K N DE ++A R + +
Sbjct: 18 IAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLN----SDENPDIAARYGVMS 69
Query: 179 VPLFHFYKNGALVE 192
+P F+K+G V+
Sbjct: 70 LPTVIFFKDGEPVD 83
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180
+VDFY CG CK + +L K Q ++ K +D EQ E+A I+++P
Sbjct: 42 IVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYK---VDTEKEQ-ELAGAFGIRSIP 94
Query: 181 LFHF 184
F
Sbjct: 95 SILF 98
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 116 TGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172
+ +V+FY C + + F S + K E V+F + + D+ S++A+
Sbjct: 21 NADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDC----DQHSDIAQ 76
Query: 173 RLKIKTVPLFHFYKNG 188
R +I P ++NG
Sbjct: 77 RYRISKYPTLKLFRNG 92
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE--VAERLKIK 177
V+++FY CG CK +E ++ L K Q K VI + D + ++ K++
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ-------KDLVIAKMDATANDITNDQYKVE 80
Query: 178 TVPLFHFYKNG 188
P +F +G
Sbjct: 81 GFPTIYFAPSG 91
>pdb|1P8C|A Chain A, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|B Chain B, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|C Chain C, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|D Chain D, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|E Chain E, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
pdb|1P8C|F Chain F, Crystal Structure Of Tm1620 (Apc4843) From Thermotoga
Maritima
Length = 145
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 73 KVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG 130
++ GL+ +T D+ V CV+E +D E F+ L+ + G +V+ R + G
Sbjct: 69 ELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVG 126
>pdb|1VKE|A Chain A, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|B Chain B, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|C Chain C, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|D Chain D, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|E Chain E, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
pdb|1VKE|F Chain F, Crystal Structure Of Carboxymuconolactone Decarboxylase
Family Protein Possibly Involved In Antioxidative
Response (Tm1620) From Thermotoga Maritima At 1.56 A
Resolution
Length = 133
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 73 KVKGLIDATQGESDEDDDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG 130
++ GL+ +T D+ V CV+E +D E F+ L+ + G +V+ R + G
Sbjct: 59 ELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,282,349
Number of Sequences: 62578
Number of extensions: 251704
Number of successful extensions: 745
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 114
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)